Multiple sequence alignment - TraesCS5A01G197900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G197900 chr5A 100.000 3750 0 0 2125 5874 401952754 401956503 0.000000e+00 6926.0
1 TraesCS5A01G197900 chr5A 100.000 1639 0 0 1 1639 401950630 401952268 0.000000e+00 3027.0
2 TraesCS5A01G197900 chr5A 91.985 262 21 0 2127 2388 401951996 401952257 9.300000e-98 368.0
3 TraesCS5A01G197900 chr5A 91.985 262 21 0 1367 1628 401952756 401953017 9.300000e-98 368.0
4 TraesCS5A01G197900 chr5A 84.868 304 44 2 3706 4008 398191876 398192178 7.400000e-79 305.0
5 TraesCS5A01G197900 chr5A 96.403 139 2 1 1 139 703668227 703668362 5.920000e-55 226.0
6 TraesCS5A01G197900 chr5B 93.628 3170 144 26 2125 5267 337191356 337188218 0.000000e+00 4682.0
7 TraesCS5A01G197900 chr5B 93.683 1409 70 7 246 1639 337192978 337191574 0.000000e+00 2091.0
8 TraesCS5A01G197900 chr5B 86.617 538 37 14 5341 5874 337188214 337187708 3.970000e-156 562.0
9 TraesCS5A01G197900 chr5B 89.516 372 32 4 2127 2496 337191846 337191480 1.150000e-126 464.0
10 TraesCS5A01G197900 chr5B 88.360 378 43 1 1263 1639 337191705 337191328 2.500000e-123 453.0
11 TraesCS5A01G197900 chr5B 88.503 374 36 4 2125 2496 337191602 337191234 4.180000e-121 446.0
12 TraesCS5A01G197900 chr5B 84.539 304 45 2 3706 4008 344288595 344288897 3.440000e-77 300.0
13 TraesCS5A01G197900 chr5B 95.270 148 3 2 1 148 656461805 656461948 1.270000e-56 231.0
14 TraesCS5A01G197900 chr5D 93.500 3169 146 27 2125 5266 297153118 297149983 0.000000e+00 4656.0
15 TraesCS5A01G197900 chr5D 94.380 1459 66 5 193 1639 297155024 297153570 0.000000e+00 2226.0
16 TraesCS5A01G197900 chr5D 87.151 537 35 13 5341 5874 297149992 297149487 3.950000e-161 579.0
17 TraesCS5A01G197900 chr5D 89.418 378 39 1 1263 1639 297153701 297153324 5.330000e-130 475.0
18 TraesCS5A01G197900 chr5D 88.828 367 40 1 1263 1628 297153221 297152855 3.230000e-122 449.0
19 TraesCS5A01G197900 chr5D 89.914 347 32 1 2125 2471 297153598 297153255 1.500000e-120 444.0
20 TraesCS5A01G197900 chr5D 88.172 372 37 4 2127 2496 297153842 297153476 2.510000e-118 436.0
21 TraesCS5A01G197900 chr5D 85.979 378 40 2 1263 1639 297153455 297153090 5.520000e-105 392.0
22 TraesCS5A01G197900 chr5D 86.096 374 33 5 2125 2496 297153352 297152996 9.230000e-103 385.0
23 TraesCS5A01G197900 chr5D 84.539 304 45 2 3706 4008 300946564 300946262 3.440000e-77 300.0
24 TraesCS5A01G197900 chr2A 96.454 141 2 1 1 141 595396762 595396899 4.580000e-56 230.0
25 TraesCS5A01G197900 chr2A 86.667 75 7 3 134 206 468334129 468334202 4.880000e-11 80.5
26 TraesCS5A01G197900 chr3A 95.804 143 3 2 1 143 640760005 640760144 1.650000e-55 228.0
27 TraesCS5A01G197900 chr4B 95.172 145 4 1 1 145 143898014 143898155 5.920000e-55 226.0
28 TraesCS5A01G197900 chr3B 95.172 145 4 1 1 145 827401400 827401259 5.920000e-55 226.0
29 TraesCS5A01G197900 chr3B 95.172 145 4 1 1 145 830789401 830789542 5.920000e-55 226.0
30 TraesCS5A01G197900 chr1B 95.775 142 3 1 1 142 46872900 46873038 5.920000e-55 226.0
31 TraesCS5A01G197900 chr1A 93.421 152 4 5 3 151 576159596 576159744 2.760000e-53 220.0
32 TraesCS5A01G197900 chr2D 94.737 57 3 0 134 190 434533770 434533826 8.110000e-14 89.8
33 TraesCS5A01G197900 chr1D 93.220 59 4 0 134 192 245254793 245254851 2.920000e-13 87.9
34 TraesCS5A01G197900 chr1D 92.982 57 4 0 137 193 34088655 34088599 3.770000e-12 84.2
35 TraesCS5A01G197900 chr1D 92.982 57 4 0 137 193 34137158 34137102 3.770000e-12 84.2
36 TraesCS5A01G197900 chr1D 92.982 57 4 0 137 193 34186298 34186242 3.770000e-12 84.2
37 TraesCS5A01G197900 chr1D 92.982 57 4 0 137 193 157169667 157169611 3.770000e-12 84.2
38 TraesCS5A01G197900 chr7D 94.545 55 3 0 137 191 49765746 49765692 1.050000e-12 86.1
39 TraesCS5A01G197900 chr4D 92.982 57 4 0 134 190 47811226 47811282 3.770000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G197900 chr5A 401950630 401956503 5873 False 2672.250000 6926 95.992500 1 5874 4 chr5A.!!$F3 5873
1 TraesCS5A01G197900 chr5B 337187708 337192978 5270 True 1449.666667 4682 90.051167 246 5874 6 chr5B.!!$R1 5628
2 TraesCS5A01G197900 chr5D 297149487 297155024 5537 True 1115.777778 4656 89.270889 193 5874 9 chr5D.!!$R2 5681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.035439 CCATTGTGGCCGGTCTAAGT 60.035 55.000 7.97 0.0 0.00 2.24 F
1094 1122 0.108585 GTTGTGGGAAGCAGAGTGGA 59.891 55.000 0.00 0.0 0.00 4.02 F
2266 2787 0.028902 GACCGCCCACGAAATTATGC 59.971 55.000 0.00 0.0 43.93 3.14 F
2313 2834 0.107897 CGCTTGTGGGTGTGCCTATA 60.108 55.000 0.00 0.0 34.45 1.31 F
3168 3692 0.313043 TTCCGACGAGGTGAGTGTTC 59.687 55.000 0.00 0.0 41.99 3.18 F
3232 3774 1.072505 CACTTGTAGCGGGGGTTGT 59.927 57.895 0.00 0.0 0.00 3.32 F
4522 5071 1.181001 GTCGTGACGATGACGATGAC 58.819 55.000 12.08 0.0 46.72 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1246 1274 0.117340 ACCAGCACCTCCTTACCTCT 59.883 55.000 0.00 0.0 0.0 3.69 R
2316 2837 0.745845 ATCGTGAGCAAGGCATCCAC 60.746 55.000 0.00 0.0 0.0 4.02 R
3135 3659 0.255033 TCGGAAGGAGGACATCGAGA 59.745 55.000 0.00 0.0 0.0 4.04 R
3276 3818 0.460987 GCTCTCACATGGTTCCTCGG 60.461 60.000 0.00 0.0 0.0 4.63 R
4306 4855 1.077005 ACCCTATTGTGGCATGTTGGT 59.923 47.619 0.00 0.0 0.0 3.67 R
4664 5213 1.271379 CTGTGCATGCATGTTTGGAGT 59.729 47.619 25.64 0.0 0.0 3.85 R
5589 6156 0.258484 CCCCATCTACCACATGCCAA 59.742 55.000 0.00 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 9.606631 AGAGTGTAGATTCATTCATTTTACTCC 57.393 33.333 0.00 0.00 32.34 3.85
77 78 8.425577 AGTGTAGATTCATTCATTTTACTCCG 57.574 34.615 0.00 0.00 0.00 4.63
78 79 8.041323 AGTGTAGATTCATTCATTTTACTCCGT 58.959 33.333 0.00 0.00 0.00 4.69
79 80 9.309516 GTGTAGATTCATTCATTTTACTCCGTA 57.690 33.333 0.00 0.00 0.00 4.02
82 83 8.964476 AGATTCATTCATTTTACTCCGTATGT 57.036 30.769 0.00 0.00 0.00 2.29
85 86 9.832445 ATTCATTCATTTTACTCCGTATGTAGT 57.168 29.630 0.00 0.00 0.00 2.73
86 87 8.867112 TCATTCATTTTACTCCGTATGTAGTC 57.133 34.615 0.00 0.00 0.00 2.59
87 88 8.471609 TCATTCATTTTACTCCGTATGTAGTCA 58.528 33.333 0.00 0.00 0.00 3.41
88 89 8.540492 CATTCATTTTACTCCGTATGTAGTCAC 58.460 37.037 0.00 0.00 0.00 3.67
89 90 7.400599 TCATTTTACTCCGTATGTAGTCACT 57.599 36.000 0.00 0.00 0.00 3.41
90 91 7.833786 TCATTTTACTCCGTATGTAGTCACTT 58.166 34.615 0.00 0.00 0.00 3.16
91 92 7.758076 TCATTTTACTCCGTATGTAGTCACTTG 59.242 37.037 0.00 0.00 0.00 3.16
92 93 6.579666 TTTACTCCGTATGTAGTCACTTGT 57.420 37.500 0.00 0.00 0.00 3.16
93 94 6.579666 TTACTCCGTATGTAGTCACTTGTT 57.420 37.500 0.00 0.00 0.00 2.83
94 95 4.806330 ACTCCGTATGTAGTCACTTGTTG 58.194 43.478 0.00 0.00 0.00 3.33
95 96 4.521639 ACTCCGTATGTAGTCACTTGTTGA 59.478 41.667 0.00 0.00 0.00 3.18
96 97 5.010314 ACTCCGTATGTAGTCACTTGTTGAA 59.990 40.000 0.00 0.00 35.39 2.69
97 98 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
98 99 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
99 100 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
100 101 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
101 102 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
102 103 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
103 104 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
104 105 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
105 106 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
106 107 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
107 108 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
108 109 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
109 110 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
110 111 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
111 112 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
112 113 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
113 114 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
114 115 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
115 116 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
116 117 7.173218 TGTTGAAATGCCTAGAAAGACAAGTAG 59.827 37.037 0.00 0.00 0.00 2.57
117 118 6.769512 TGAAATGCCTAGAAAGACAAGTAGT 58.230 36.000 0.00 0.00 0.00 2.73
118 119 7.903145 TGAAATGCCTAGAAAGACAAGTAGTA 58.097 34.615 0.00 0.00 0.00 1.82
119 120 8.540388 TGAAATGCCTAGAAAGACAAGTAGTAT 58.460 33.333 0.00 0.00 0.00 2.12
120 121 9.384764 GAAATGCCTAGAAAGACAAGTAGTATT 57.615 33.333 0.00 0.00 31.85 1.89
121 122 9.740710 AAATGCCTAGAAAGACAAGTAGTATTT 57.259 29.630 0.00 0.00 43.84 1.40
124 125 8.475639 TGCCTAGAAAGACAAGTAGTATTTAGG 58.524 37.037 0.00 0.00 41.42 2.69
125 126 8.693625 GCCTAGAAAGACAAGTAGTATTTAGGA 58.306 37.037 7.84 0.00 41.42 2.94
128 129 8.983307 AGAAAGACAAGTAGTATTTAGGAACG 57.017 34.615 0.00 0.00 41.42 3.95
129 130 8.033626 AGAAAGACAAGTAGTATTTAGGAACGG 58.966 37.037 0.00 0.00 41.42 4.44
130 131 7.472334 AAGACAAGTAGTATTTAGGAACGGA 57.528 36.000 0.00 0.00 0.00 4.69
131 132 7.098074 AGACAAGTAGTATTTAGGAACGGAG 57.902 40.000 0.00 0.00 0.00 4.63
132 133 6.096564 AGACAAGTAGTATTTAGGAACGGAGG 59.903 42.308 0.00 0.00 0.00 4.30
133 134 5.128335 ACAAGTAGTATTTAGGAACGGAGGG 59.872 44.000 0.00 0.00 0.00 4.30
134 135 5.134725 AGTAGTATTTAGGAACGGAGGGA 57.865 43.478 0.00 0.00 0.00 4.20
135 136 5.139001 AGTAGTATTTAGGAACGGAGGGAG 58.861 45.833 0.00 0.00 0.00 4.30
136 137 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
137 138 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
138 139 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
139 140 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
140 141 4.591321 TTTAGGAACGGAGGGAGTAGTA 57.409 45.455 0.00 0.00 0.00 1.82
141 142 4.591321 TTAGGAACGGAGGGAGTAGTAA 57.409 45.455 0.00 0.00 0.00 2.24
142 143 2.732763 AGGAACGGAGGGAGTAGTAAC 58.267 52.381 0.00 0.00 0.00 2.50
143 144 2.042162 AGGAACGGAGGGAGTAGTAACA 59.958 50.000 0.00 0.00 0.00 2.41
144 145 3.029570 GGAACGGAGGGAGTAGTAACAT 58.970 50.000 0.00 0.00 0.00 2.71
145 146 3.181478 GGAACGGAGGGAGTAGTAACATG 60.181 52.174 0.00 0.00 0.00 3.21
146 147 3.097342 ACGGAGGGAGTAGTAACATGT 57.903 47.619 0.00 0.00 0.00 3.21
147 148 2.758979 ACGGAGGGAGTAGTAACATGTG 59.241 50.000 0.00 0.00 0.00 3.21
148 149 2.481449 CGGAGGGAGTAGTAACATGTGC 60.481 54.545 0.00 0.00 0.00 4.57
149 150 2.500098 GGAGGGAGTAGTAACATGTGCA 59.500 50.000 0.00 0.00 0.00 4.57
150 151 3.134804 GGAGGGAGTAGTAACATGTGCAT 59.865 47.826 0.00 0.00 0.00 3.96
151 152 4.122776 GAGGGAGTAGTAACATGTGCATG 58.877 47.826 10.31 10.31 44.15 4.06
166 167 7.776933 CATGTGCATGTTACTAGTCTATGTT 57.223 36.000 0.00 0.00 34.23 2.71
167 168 8.871686 CATGTGCATGTTACTAGTCTATGTTA 57.128 34.615 0.00 0.00 34.23 2.41
168 169 9.481340 CATGTGCATGTTACTAGTCTATGTTAT 57.519 33.333 0.00 0.00 34.23 1.89
169 170 9.698309 ATGTGCATGTTACTAGTCTATGTTATC 57.302 33.333 0.00 0.00 0.00 1.75
170 171 8.691797 TGTGCATGTTACTAGTCTATGTTATCA 58.308 33.333 0.00 0.00 0.00 2.15
171 172 8.969267 GTGCATGTTACTAGTCTATGTTATCAC 58.031 37.037 0.00 3.33 0.00 3.06
172 173 8.141909 TGCATGTTACTAGTCTATGTTATCACC 58.858 37.037 0.00 0.00 0.00 4.02
173 174 7.599245 GCATGTTACTAGTCTATGTTATCACCC 59.401 40.741 0.00 0.00 0.00 4.61
174 175 8.638873 CATGTTACTAGTCTATGTTATCACCCA 58.361 37.037 0.00 0.00 0.00 4.51
175 176 8.777578 TGTTACTAGTCTATGTTATCACCCAT 57.222 34.615 0.00 0.00 0.00 4.00
176 177 9.209048 TGTTACTAGTCTATGTTATCACCCATT 57.791 33.333 0.00 0.00 0.00 3.16
177 178 9.477484 GTTACTAGTCTATGTTATCACCCATTG 57.523 37.037 0.00 0.00 0.00 2.82
178 179 7.676683 ACTAGTCTATGTTATCACCCATTGT 57.323 36.000 0.00 0.00 0.00 2.71
179 180 7.500992 ACTAGTCTATGTTATCACCCATTGTG 58.499 38.462 0.00 0.00 46.88 3.33
180 181 5.684704 AGTCTATGTTATCACCCATTGTGG 58.315 41.667 0.00 0.00 45.48 4.17
181 182 4.275936 GTCTATGTTATCACCCATTGTGGC 59.724 45.833 0.00 0.00 45.48 5.01
182 183 1.846007 TGTTATCACCCATTGTGGCC 58.154 50.000 0.00 0.00 45.48 5.36
183 184 0.738389 GTTATCACCCATTGTGGCCG 59.262 55.000 0.00 0.00 45.48 6.13
184 185 0.395036 TTATCACCCATTGTGGCCGG 60.395 55.000 0.00 0.00 45.48 6.13
185 186 1.567208 TATCACCCATTGTGGCCGGT 61.567 55.000 1.90 0.00 45.48 5.28
186 187 2.837031 ATCACCCATTGTGGCCGGTC 62.837 60.000 0.00 0.00 45.48 4.79
187 188 3.256960 ACCCATTGTGGCCGGTCT 61.257 61.111 7.97 0.00 35.79 3.85
188 189 1.921346 ACCCATTGTGGCCGGTCTA 60.921 57.895 7.97 0.00 35.79 2.59
189 190 1.301623 CCCATTGTGGCCGGTCTAA 59.698 57.895 7.97 2.73 35.79 2.10
190 191 0.748005 CCCATTGTGGCCGGTCTAAG 60.748 60.000 7.97 0.00 35.79 2.18
191 192 0.035439 CCATTGTGGCCGGTCTAAGT 60.035 55.000 7.97 0.00 0.00 2.24
200 201 2.344025 GCCGGTCTAAGTAAACCACAG 58.656 52.381 1.90 0.00 35.13 3.66
210 211 9.099454 GTCTAAGTAAACCACAGATAATCCAAG 57.901 37.037 0.00 0.00 0.00 3.61
229 230 1.282157 AGCCACCCATAGTCAACCTTC 59.718 52.381 0.00 0.00 0.00 3.46
240 241 4.351874 AGTCAACCTTCTCATTTCGGAA 57.648 40.909 0.00 0.00 0.00 4.30
260 261 2.220313 AGATTCTAGAGCCCGTACGAC 58.780 52.381 18.76 8.59 0.00 4.34
267 268 0.248949 GAGCCCGTACGACCTGATTC 60.249 60.000 18.76 0.77 0.00 2.52
304 305 4.713824 TCTCTACAGTACCGACCAAATG 57.286 45.455 0.00 0.00 0.00 2.32
368 370 1.792949 GCAACAATATCGCGGGAGTAG 59.207 52.381 6.13 0.57 0.00 2.57
371 373 3.911661 ACAATATCGCGGGAGTAGTAC 57.088 47.619 6.13 0.00 0.00 2.73
374 376 4.453819 ACAATATCGCGGGAGTAGTACTAC 59.546 45.833 23.03 23.03 36.35 2.73
376 378 1.945387 TCGCGGGAGTAGTACTACTG 58.055 55.000 34.67 22.81 45.63 2.74
420 428 2.205342 TCTCCTTCCCAAACATAGGGG 58.795 52.381 0.00 0.00 46.77 4.79
421 429 1.215423 CTCCTTCCCAAACATAGGGGG 59.785 57.143 0.00 0.00 46.77 5.40
454 470 0.256464 AGTCTCCACCCTCTACCTCG 59.744 60.000 0.00 0.00 0.00 4.63
646 662 4.113354 GAGGTGTCGATCTGGATTTGTAC 58.887 47.826 0.00 0.00 0.00 2.90
895 923 1.040646 GGATGCACGTCCCTCAGATA 58.959 55.000 0.00 0.00 31.82 1.98
918 946 2.502492 GGCAGAGATCAGGGCGCTA 61.502 63.158 7.64 0.00 0.00 4.26
998 1026 1.889105 CCATGGAAGATGGCGGTCG 60.889 63.158 5.56 0.00 31.75 4.79
1070 1098 5.015515 TGTTGTTATTGGCAATGGAGATGA 58.984 37.500 22.57 0.00 0.00 2.92
1094 1122 0.108585 GTTGTGGGAAGCAGAGTGGA 59.891 55.000 0.00 0.00 0.00 4.02
1356 1385 3.644966 TTCAGGTTGTGGTGTTTCTCT 57.355 42.857 0.00 0.00 0.00 3.10
1495 1524 1.062587 GATGATTTTGCAGACCGTCCG 59.937 52.381 0.00 0.00 0.00 4.79
1497 1526 1.573829 GATTTTGCAGACCGTCCGCA 61.574 55.000 5.28 5.28 0.00 5.69
1551 1826 0.178992 TTTGCTAGCTGGTGTGCCTT 60.179 50.000 17.23 0.00 35.27 4.35
1559 1834 1.967319 CTGGTGTGCCTTTGTAGTGT 58.033 50.000 0.00 0.00 35.27 3.55
1580 1855 1.438651 TGCCTTGCTCACGATTACAC 58.561 50.000 0.00 0.00 0.00 2.90
1617 2138 1.182667 TCTCCGATTTTGAGGCGAGA 58.817 50.000 0.00 0.00 0.00 4.04
1618 2139 1.757118 TCTCCGATTTTGAGGCGAGAT 59.243 47.619 0.00 0.00 0.00 2.75
1619 2140 2.956333 TCTCCGATTTTGAGGCGAGATA 59.044 45.455 0.00 0.00 0.00 1.98
1620 2141 3.383505 TCTCCGATTTTGAGGCGAGATAA 59.616 43.478 0.00 0.00 0.00 1.75
1621 2142 4.039245 TCTCCGATTTTGAGGCGAGATAAT 59.961 41.667 0.00 0.00 0.00 1.28
1622 2143 4.703897 TCCGATTTTGAGGCGAGATAATT 58.296 39.130 0.00 0.00 0.00 1.40
1623 2144 4.750098 TCCGATTTTGAGGCGAGATAATTC 59.250 41.667 0.00 0.00 0.00 2.17
1624 2145 4.752101 CCGATTTTGAGGCGAGATAATTCT 59.248 41.667 0.00 0.00 33.88 2.40
1625 2146 5.926542 CCGATTTTGAGGCGAGATAATTCTA 59.073 40.000 0.00 0.00 30.30 2.10
1626 2147 6.423905 CCGATTTTGAGGCGAGATAATTCTAA 59.576 38.462 0.00 0.00 30.30 2.10
1627 2148 7.118390 CCGATTTTGAGGCGAGATAATTCTAAT 59.882 37.037 0.00 0.00 30.30 1.73
1628 2149 9.140286 CGATTTTGAGGCGAGATAATTCTAATA 57.860 33.333 0.00 0.00 30.30 0.98
1632 2153 9.996554 TTTGAGGCGAGATAATTCTAATAATGA 57.003 29.630 0.00 0.00 30.30 2.57
1633 2154 9.996554 TTGAGGCGAGATAATTCTAATAATGAA 57.003 29.630 0.00 0.00 30.30 2.57
1634 2155 9.996554 TGAGGCGAGATAATTCTAATAATGAAA 57.003 29.630 0.00 0.00 30.30 2.69
1636 2157 9.778741 AGGCGAGATAATTCTAATAATGAAACA 57.221 29.630 0.00 0.00 30.30 2.83
2163 2684 3.692101 TCACGAAACAGAAGGCAAAAGAA 59.308 39.130 0.00 0.00 0.00 2.52
2200 2721 0.393808 ACCGGGGCACACAATCATAC 60.394 55.000 6.32 0.00 0.00 2.39
2252 2773 1.202222 CCAGATGATTTTGCAGACCGC 60.202 52.381 0.00 0.00 42.89 5.68
2266 2787 0.028902 GACCGCCCACGAAATTATGC 59.971 55.000 0.00 0.00 43.93 3.14
2274 2795 4.133820 CCCACGAAATTATGCTGGTATGA 58.866 43.478 0.00 0.00 0.00 2.15
2280 2801 6.767902 ACGAAATTATGCTGGTATGAAGACAT 59.232 34.615 0.00 0.00 40.16 3.06
2295 2816 5.162794 TGAAGACATGCCAATCATTTTTCG 58.837 37.500 0.00 0.00 31.79 3.46
2298 2819 3.928375 GACATGCCAATCATTTTTCGCTT 59.072 39.130 0.00 0.00 31.79 4.68
2313 2834 0.107897 CGCTTGTGGGTGTGCCTATA 60.108 55.000 0.00 0.00 34.45 1.31
2316 2837 3.403038 GCTTGTGGGTGTGCCTATATAG 58.597 50.000 2.46 2.46 34.45 1.31
2393 2914 4.285517 AGGCGAGATGATTCTAATGTGGAT 59.714 41.667 0.00 0.00 30.30 3.41
2396 2917 7.343057 AGGCGAGATGATTCTAATGTGGATATA 59.657 37.037 0.00 0.00 30.30 0.86
2442 2963 0.391661 AGCTACCGAGGCACACAATG 60.392 55.000 0.00 0.00 0.00 2.82
2506 3027 0.597377 GGTTTTGCAAGAGGCCAACG 60.597 55.000 5.01 0.00 43.89 4.10
2522 3043 1.227999 AACGCGGCCATGATAATCCG 61.228 55.000 12.47 0.07 44.29 4.18
2538 3059 8.310406 TGATAATCCGCTAAATGATGTTACAG 57.690 34.615 0.00 0.00 0.00 2.74
2539 3060 8.147704 TGATAATCCGCTAAATGATGTTACAGA 58.852 33.333 0.00 0.00 0.00 3.41
2563 3084 4.859798 CGACTCACCAAGACATAGTTTCTC 59.140 45.833 0.00 0.00 0.00 2.87
2564 3085 5.564848 CGACTCACCAAGACATAGTTTCTCA 60.565 44.000 0.00 0.00 0.00 3.27
2586 3107 5.049167 CAGAGCAGATGAATGGTAGAAGAC 58.951 45.833 0.00 0.00 0.00 3.01
2612 3133 3.353836 GAAAGGAAGCGCGCACCA 61.354 61.111 35.35 0.00 0.00 4.17
2620 3141 1.874345 AAGCGCGCACCACTAGTAGT 61.874 55.000 35.10 4.19 0.00 2.73
2644 3165 4.187694 GGGAACACTGAGATTAGAAGCAG 58.812 47.826 0.00 0.00 34.65 4.24
2666 3187 1.361668 GCGAAGGACGTGTGCATGAT 61.362 55.000 0.00 0.00 44.60 2.45
2696 3217 2.300996 GACTCATCCAAGAGGCCCA 58.699 57.895 0.00 0.00 37.72 5.36
2724 3245 2.810852 GTGAAGAGAAAGGGCAAGAGTG 59.189 50.000 0.00 0.00 0.00 3.51
2768 3289 3.144506 GACATTGGTAGATGATGCAGGG 58.855 50.000 0.00 0.00 0.00 4.45
2772 3293 1.131638 GGTAGATGATGCAGGGGTGA 58.868 55.000 0.00 0.00 0.00 4.02
2795 3316 2.016704 CGTGATACGCTCGGCATCC 61.017 63.158 0.00 0.00 33.65 3.51
2929 3450 4.403453 ACGCAACGAAAGAAATCTATTGC 58.597 39.130 0.00 0.00 36.50 3.56
2930 3451 3.786048 CGCAACGAAAGAAATCTATTGCC 59.214 43.478 12.27 0.00 36.50 4.52
2950 3471 2.420022 CCAGTGTTCCTAAATCGCTTGG 59.580 50.000 0.00 0.00 0.00 3.61
2971 3495 5.947663 TGGTCCTAGGAAAAATGTGAAGAA 58.052 37.500 14.65 0.00 0.00 2.52
2972 3496 6.369629 TGGTCCTAGGAAAAATGTGAAGAAA 58.630 36.000 14.65 0.00 0.00 2.52
2973 3497 6.836527 TGGTCCTAGGAAAAATGTGAAGAAAA 59.163 34.615 14.65 0.00 0.00 2.29
3001 3525 3.758554 GCTACTCCAAGGAAAGAATTGCA 59.241 43.478 3.07 0.00 0.00 4.08
3024 3548 4.041321 ACTCCAAAGTTACCCCTTCTACAC 59.959 45.833 0.00 0.00 28.74 2.90
3049 3573 3.130160 GCGCAAGGCAAGAGAGGG 61.130 66.667 0.30 0.00 42.87 4.30
3064 3588 0.391228 GAGGGCGGAGAAGATTCCTC 59.609 60.000 0.00 0.00 34.96 3.71
3065 3589 1.051556 AGGGCGGAGAAGATTCCTCC 61.052 60.000 0.00 0.00 45.16 4.30
3066 3590 1.051556 GGGCGGAGAAGATTCCTCCT 61.052 60.000 0.00 0.00 46.15 3.69
3067 3591 0.391228 GGCGGAGAAGATTCCTCCTC 59.609 60.000 0.00 0.00 46.15 3.71
3068 3592 1.115467 GCGGAGAAGATTCCTCCTCA 58.885 55.000 0.00 0.00 46.15 3.86
3069 3593 1.482593 GCGGAGAAGATTCCTCCTCAA 59.517 52.381 0.00 0.00 46.15 3.02
3093 3617 5.831702 AGATGATGAGAAATCTTTGGCAC 57.168 39.130 0.00 0.00 28.51 5.01
3094 3618 4.334759 AGATGATGAGAAATCTTTGGCACG 59.665 41.667 0.00 0.00 28.51 5.34
3135 3659 9.669353 GAAATAATAAATCATGCGTCAACATCT 57.331 29.630 0.00 0.00 0.00 2.90
3155 3679 0.382515 CTCGATGTCCTCCTTCCGAC 59.617 60.000 0.00 0.00 0.00 4.79
3158 3682 0.382515 GATGTCCTCCTTCCGACGAG 59.617 60.000 0.00 0.00 0.00 4.18
3159 3683 1.038130 ATGTCCTCCTTCCGACGAGG 61.038 60.000 0.00 0.00 46.07 4.63
3168 3692 0.313043 TTCCGACGAGGTGAGTGTTC 59.687 55.000 0.00 0.00 41.99 3.18
3195 3737 6.462552 AGATTGATGAGAGAAGTCGATTGA 57.537 37.500 0.00 0.00 0.00 2.57
3210 3752 2.222678 CGATTGAGCGATCCAAAGGATG 59.777 50.000 2.74 0.00 43.27 3.51
3232 3774 1.072505 CACTTGTAGCGGGGGTTGT 59.927 57.895 0.00 0.00 0.00 3.32
3244 3786 3.644823 CGGGGGTTGTTGATGTAAAAAC 58.355 45.455 0.00 0.00 36.03 2.43
3276 3818 2.744741 GGAAGCTTGCAAGAAGGTACTC 59.255 50.000 30.39 9.39 38.49 2.59
3283 3825 1.549170 GCAAGAAGGTACTCCGAGGAA 59.451 52.381 0.00 0.00 38.49 3.36
3284 3826 2.674462 GCAAGAAGGTACTCCGAGGAAC 60.674 54.545 0.00 0.00 38.49 3.62
3325 3867 3.011566 TGTGAAGACAAAGGGCAAGAA 57.988 42.857 0.00 0.00 0.00 2.52
3357 3899 4.206375 TGTCAAGGTGAATGTGACATTGT 58.794 39.130 16.52 0.00 45.02 2.71
3369 3911 7.227314 TGAATGTGACATTGTTAGATGATAGGC 59.773 37.037 16.52 0.00 0.00 3.93
3393 3935 4.307432 GGTCTTTGAAGATGACAAGACGA 58.693 43.478 0.00 0.00 37.39 4.20
3401 3943 4.336889 AGATGACAAGACGAGAAACCAA 57.663 40.909 0.00 0.00 0.00 3.67
3508 4056 3.437213 TCGACAAGGACTCTGGGAATAA 58.563 45.455 0.00 0.00 0.00 1.40
3515 4063 4.168101 AGGACTCTGGGAATAAGTTCACA 58.832 43.478 0.00 0.00 45.23 3.58
3521 4069 5.560724 TCTGGGAATAAGTTCACAAAGGAG 58.439 41.667 0.00 0.00 46.55 3.69
3544 4092 4.162320 GTCTAAGTGTGGGGATCATCTTCA 59.838 45.833 0.00 0.00 0.00 3.02
3548 4096 2.503356 GTGTGGGGATCATCTTCAGACT 59.497 50.000 0.00 0.00 0.00 3.24
3584 4132 5.418840 AGAAAATGATAATGTCGGCCTTGTT 59.581 36.000 0.00 0.00 0.00 2.83
3651 4199 1.353091 GTGGACAGAAGGGAAGAGGT 58.647 55.000 0.00 0.00 0.00 3.85
3652 4200 1.276705 GTGGACAGAAGGGAAGAGGTC 59.723 57.143 0.00 0.00 0.00 3.85
3658 4206 4.430441 ACAGAAGGGAAGAGGTCTATTGT 58.570 43.478 0.00 0.00 0.00 2.71
3709 4257 8.302515 AGGAATAATAACTCTCTTACCGTTCA 57.697 34.615 0.00 0.00 0.00 3.18
3726 4274 3.490761 CGTTCATGAAGGCCTTTGTTTGT 60.491 43.478 21.54 0.00 0.00 2.83
3812 4360 3.127895 TGCCAACGCCATTTAAGTACATC 59.872 43.478 0.00 0.00 0.00 3.06
3855 4403 4.082081 CCTCATATGCAAAAGCACCTTCAA 60.082 41.667 0.00 0.00 0.00 2.69
3875 4423 4.080919 TCAATAGGCTGTGACTGCACTAAT 60.081 41.667 16.18 5.91 45.36 1.73
4025 4573 6.094464 AGGGTGTTCAGTAACTTACAAAACAC 59.906 38.462 24.53 24.53 45.47 3.32
4105 4654 3.056607 ACAACATGTTCTTATTGCCAGCC 60.057 43.478 8.48 0.00 0.00 4.85
4177 4726 2.288395 GGCAGTGAAATGTGGGAAACTG 60.288 50.000 0.00 0.00 38.41 3.16
4205 4754 2.109126 GCCGAAGCCTGCTTACCTG 61.109 63.158 4.03 0.00 36.26 4.00
4387 4936 1.386772 TGGGAAGACAGGTTGGGGT 60.387 57.895 0.00 0.00 0.00 4.95
4429 4978 4.091549 TCCCTTCAGGTAGTTTCGTATGT 58.908 43.478 0.00 0.00 36.75 2.29
4522 5071 1.181001 GTCGTGACGATGACGATGAC 58.819 55.000 12.08 0.00 46.72 3.06
4525 5074 1.594760 CGTGACGATGACGATGACGAT 60.595 52.381 0.00 0.00 42.66 3.73
4528 5077 2.290641 TGACGATGACGATGACGATGAT 59.709 45.455 0.00 0.00 42.66 2.45
4529 5078 2.654056 GACGATGACGATGACGATGATG 59.346 50.000 0.00 0.00 42.66 3.07
4530 5079 2.290641 ACGATGACGATGACGATGATGA 59.709 45.455 0.00 0.00 42.66 2.92
4531 5080 3.057946 ACGATGACGATGACGATGATGAT 60.058 43.478 0.00 0.00 42.66 2.45
4532 5081 3.300066 CGATGACGATGACGATGATGATG 59.700 47.826 0.00 0.00 42.66 3.07
4533 5082 3.988379 TGACGATGACGATGATGATGA 57.012 42.857 0.00 0.00 42.66 2.92
4534 5083 3.632189 TGACGATGACGATGATGATGAC 58.368 45.455 0.00 0.00 42.66 3.06
4535 5084 2.654056 GACGATGACGATGATGATGACG 59.346 50.000 0.00 0.00 42.66 4.35
4536 5085 2.290641 ACGATGACGATGATGATGACGA 59.709 45.455 0.00 0.00 42.66 4.20
4537 5086 3.057946 ACGATGACGATGATGATGACGAT 60.058 43.478 0.00 0.00 42.66 3.73
4538 5087 3.300066 CGATGACGATGATGATGACGATG 59.700 47.826 0.00 0.00 42.66 3.84
4539 5088 3.988379 TGACGATGATGATGACGATGA 57.012 42.857 0.00 0.00 0.00 2.92
4540 5089 3.632189 TGACGATGATGATGACGATGAC 58.368 45.455 0.00 0.00 0.00 3.06
4541 5090 2.654056 GACGATGATGATGACGATGACG 59.346 50.000 0.00 0.00 45.75 4.35
4542 5091 2.290641 ACGATGATGATGACGATGACGA 59.709 45.455 0.00 0.00 42.66 4.20
4543 5092 3.057946 ACGATGATGATGACGATGACGAT 60.058 43.478 0.00 0.00 42.66 3.73
4544 5093 3.300066 CGATGATGATGACGATGACGATG 59.700 47.826 0.00 0.00 42.66 3.84
4545 5094 3.988379 TGATGATGACGATGACGATGA 57.012 42.857 0.00 0.00 42.66 2.92
4546 5095 4.510038 TGATGATGACGATGACGATGAT 57.490 40.909 0.00 0.00 42.66 2.45
4547 5096 4.232221 TGATGATGACGATGACGATGATG 58.768 43.478 0.00 0.00 42.66 3.07
4548 5097 3.988379 TGATGACGATGACGATGATGA 57.012 42.857 0.00 0.00 42.66 2.92
4549 5098 3.632189 TGATGACGATGACGATGATGAC 58.368 45.455 0.00 0.00 42.66 3.06
4550 5099 2.105323 TGACGATGACGATGATGACG 57.895 50.000 0.00 0.00 42.66 4.35
4551 5100 1.668751 TGACGATGACGATGATGACGA 59.331 47.619 0.00 0.00 42.66 4.20
4552 5101 2.290641 TGACGATGACGATGATGACGAT 59.709 45.455 0.00 0.00 42.66 3.73
4559 5108 4.743493 TGACGATGATGACGATGAAGAAA 58.257 39.130 0.00 0.00 34.70 2.52
4563 5112 5.869344 ACGATGATGACGATGAAGAAAAAGA 59.131 36.000 0.00 0.00 34.70 2.52
4568 5117 7.521529 TGATGACGATGAAGAAAAAGATTCAC 58.478 34.615 0.00 0.00 38.19 3.18
4591 5140 6.758416 CACAATCTTCTAAATCCGAGATGACA 59.242 38.462 0.00 0.00 31.94 3.58
4664 5213 4.160642 AGATTCATCAACCATAGCTGCA 57.839 40.909 1.02 0.00 0.00 4.41
4710 5259 4.721274 TGTTCTCTGGGACCATGATGATAA 59.279 41.667 0.00 0.00 0.00 1.75
4756 5305 1.525619 GCCGAAAAGAATATCCGTCCG 59.474 52.381 0.00 0.00 0.00 4.79
4879 5428 5.037383 GCCTCAGGCTTTACTAAGGTATT 57.963 43.478 9.09 0.00 46.69 1.89
4888 5437 6.403878 GCTTTACTAAGGTATTGGTGACTGA 58.596 40.000 0.00 0.00 31.78 3.41
4917 5466 5.048991 GGTAATGTTCATATTTCGGCGGAAT 60.049 40.000 18.70 18.70 30.88 3.01
4933 5482 1.975363 GAATGCAGTCCTGTCAGCGC 61.975 60.000 1.86 0.00 0.00 5.92
4970 5520 2.111999 CTCTCCCGGTCACCTTGCAA 62.112 60.000 0.00 0.00 0.00 4.08
4972 5522 0.609131 CTCCCGGTCACCTTGCAATT 60.609 55.000 0.00 0.00 0.00 2.32
4975 5525 0.240945 CCGGTCACCTTGCAATTGTC 59.759 55.000 7.40 0.00 0.00 3.18
5063 5613 4.554330 GCATTAGCTCATTCTGCTGTTAGC 60.554 45.833 0.00 0.00 41.32 3.09
5069 5619 5.296283 AGCTCATTCTGCTGTTAGCTTTATG 59.704 40.000 0.00 3.59 42.97 1.90
5176 5727 6.127647 TGCTGTCCTTTTAAGCATTATTCCAG 60.128 38.462 0.00 0.00 41.83 3.86
5179 5730 6.945435 TGTCCTTTTAAGCATTATTCCAGACA 59.055 34.615 0.00 0.00 0.00 3.41
5207 5758 1.023513 GCAGGAGCTAAGTGCACTGG 61.024 60.000 22.49 17.19 43.98 4.00
5250 5817 1.682854 CTGTGCTGCCTTTCTTTCCAA 59.317 47.619 0.00 0.00 0.00 3.53
5254 5821 4.022068 TGTGCTGCCTTTCTTTCCAAATAG 60.022 41.667 0.00 0.00 0.00 1.73
5255 5822 4.218417 GTGCTGCCTTTCTTTCCAAATAGA 59.782 41.667 0.00 0.00 0.00 1.98
5256 5823 5.018809 TGCTGCCTTTCTTTCCAAATAGAT 58.981 37.500 0.00 0.00 0.00 1.98
5257 5824 6.095440 GTGCTGCCTTTCTTTCCAAATAGATA 59.905 38.462 0.00 0.00 0.00 1.98
5258 5825 6.319658 TGCTGCCTTTCTTTCCAAATAGATAG 59.680 38.462 0.00 0.00 0.00 2.08
5259 5826 6.543831 GCTGCCTTTCTTTCCAAATAGATAGA 59.456 38.462 0.00 0.00 0.00 1.98
5260 5827 7.230309 GCTGCCTTTCTTTCCAAATAGATAGAT 59.770 37.037 0.00 0.00 0.00 1.98
5261 5828 9.129532 CTGCCTTTCTTTCCAAATAGATAGATT 57.870 33.333 0.00 0.00 0.00 2.40
5262 5829 9.125026 TGCCTTTCTTTCCAAATAGATAGATTC 57.875 33.333 0.00 0.00 0.00 2.52
5263 5830 8.572185 GCCTTTCTTTCCAAATAGATAGATTCC 58.428 37.037 0.00 0.00 0.00 3.01
5264 5831 9.072375 CCTTTCTTTCCAAATAGATAGATTCCC 57.928 37.037 0.00 0.00 0.00 3.97
5265 5832 9.632638 CTTTCTTTCCAAATAGATAGATTCCCA 57.367 33.333 0.00 0.00 0.00 4.37
5266 5833 9.632638 TTTCTTTCCAAATAGATAGATTCCCAG 57.367 33.333 0.00 0.00 0.00 4.45
5267 5834 8.337118 TCTTTCCAAATAGATAGATTCCCAGT 57.663 34.615 0.00 0.00 0.00 4.00
5268 5835 8.781951 TCTTTCCAAATAGATAGATTCCCAGTT 58.218 33.333 0.00 0.00 0.00 3.16
5269 5836 8.980481 TTTCCAAATAGATAGATTCCCAGTTC 57.020 34.615 0.00 0.00 0.00 3.01
5270 5837 7.937700 TCCAAATAGATAGATTCCCAGTTCT 57.062 36.000 0.00 0.00 0.00 3.01
5271 5838 7.739825 TCCAAATAGATAGATTCCCAGTTCTG 58.260 38.462 0.00 0.00 0.00 3.02
5272 5839 7.568738 TCCAAATAGATAGATTCCCAGTTCTGA 59.431 37.037 1.00 0.00 0.00 3.27
5273 5840 8.213679 CCAAATAGATAGATTCCCAGTTCTGAA 58.786 37.037 1.00 0.00 0.00 3.02
5274 5841 9.790344 CAAATAGATAGATTCCCAGTTCTGAAT 57.210 33.333 1.00 0.00 34.02 2.57
5276 5843 6.432403 AGATAGATTCCCAGTTCTGAATCC 57.568 41.667 8.24 0.00 45.09 3.01
5277 5844 3.550437 AGATTCCCAGTTCTGAATCCG 57.450 47.619 8.24 0.00 45.09 4.18
5278 5845 3.107601 AGATTCCCAGTTCTGAATCCGA 58.892 45.455 8.24 0.00 45.09 4.55
5279 5846 2.762535 TTCCCAGTTCTGAATCCGAC 57.237 50.000 1.00 0.00 0.00 4.79
5280 5847 1.639722 TCCCAGTTCTGAATCCGACA 58.360 50.000 1.00 0.00 0.00 4.35
5281 5848 1.275291 TCCCAGTTCTGAATCCGACAC 59.725 52.381 1.00 0.00 0.00 3.67
5282 5849 1.276421 CCCAGTTCTGAATCCGACACT 59.724 52.381 1.00 0.00 0.00 3.55
5283 5850 2.289694 CCCAGTTCTGAATCCGACACTT 60.290 50.000 1.00 0.00 0.00 3.16
5284 5851 3.056107 CCCAGTTCTGAATCCGACACTTA 60.056 47.826 1.00 0.00 0.00 2.24
5285 5852 4.562757 CCCAGTTCTGAATCCGACACTTAA 60.563 45.833 1.00 0.00 0.00 1.85
5286 5853 4.994852 CCAGTTCTGAATCCGACACTTAAA 59.005 41.667 1.00 0.00 0.00 1.52
5287 5854 5.643777 CCAGTTCTGAATCCGACACTTAAAT 59.356 40.000 1.00 0.00 0.00 1.40
5288 5855 6.149474 CCAGTTCTGAATCCGACACTTAAATT 59.851 38.462 1.00 0.00 0.00 1.82
5289 5856 7.017645 CAGTTCTGAATCCGACACTTAAATTG 58.982 38.462 0.00 0.00 0.00 2.32
5290 5857 6.149474 AGTTCTGAATCCGACACTTAAATTGG 59.851 38.462 0.00 0.00 0.00 3.16
5291 5858 5.800296 TCTGAATCCGACACTTAAATTGGA 58.200 37.500 0.00 0.00 32.72 3.53
5292 5859 5.642063 TCTGAATCCGACACTTAAATTGGAC 59.358 40.000 0.00 0.00 30.85 4.02
5293 5860 5.309638 TGAATCCGACACTTAAATTGGACA 58.690 37.500 0.00 0.00 30.85 4.02
5294 5861 5.765677 TGAATCCGACACTTAAATTGGACAA 59.234 36.000 0.00 0.00 30.85 3.18
5295 5862 6.432783 TGAATCCGACACTTAAATTGGACAAT 59.567 34.615 0.00 0.00 30.85 2.71
5296 5863 5.873179 TCCGACACTTAAATTGGACAATC 57.127 39.130 0.00 0.00 0.00 2.67
5297 5864 4.698304 TCCGACACTTAAATTGGACAATCC 59.302 41.667 0.00 0.00 36.96 3.01
5298 5865 4.142469 CCGACACTTAAATTGGACAATCCC 60.142 45.833 0.00 0.00 35.03 3.85
5299 5866 4.457603 CGACACTTAAATTGGACAATCCCA 59.542 41.667 0.00 0.00 35.03 4.37
5300 5867 5.391950 CGACACTTAAATTGGACAATCCCAG 60.392 44.000 0.00 0.00 37.53 4.45
5301 5868 5.393866 ACACTTAAATTGGACAATCCCAGT 58.606 37.500 0.00 0.00 37.53 4.00
5302 5869 5.838521 ACACTTAAATTGGACAATCCCAGTT 59.161 36.000 0.00 0.00 37.69 3.16
5303 5870 6.015434 ACACTTAAATTGGACAATCCCAGTTC 60.015 38.462 0.00 0.00 35.45 3.01
5304 5871 6.209391 CACTTAAATTGGACAATCCCAGTTCT 59.791 38.462 0.00 0.00 35.45 3.01
5305 5872 7.393234 CACTTAAATTGGACAATCCCAGTTCTA 59.607 37.037 0.00 0.00 35.45 2.10
5306 5873 8.116026 ACTTAAATTGGACAATCCCAGTTCTAT 58.884 33.333 0.00 0.00 35.45 1.98
5307 5874 8.893563 TTAAATTGGACAATCCCAGTTCTATT 57.106 30.769 0.00 0.00 35.45 1.73
5308 5875 6.780457 AATTGGACAATCCCAGTTCTATTG 57.220 37.500 0.00 0.00 37.53 1.90
5309 5876 4.927267 TGGACAATCCCAGTTCTATTGT 57.073 40.909 0.00 0.00 44.35 2.71
5313 5880 5.505181 ACAATCCCAGTTCTATTGTCAGT 57.495 39.130 0.00 0.00 39.06 3.41
5314 5881 5.880901 ACAATCCCAGTTCTATTGTCAGTT 58.119 37.500 0.00 0.00 39.06 3.16
5315 5882 6.306987 ACAATCCCAGTTCTATTGTCAGTTT 58.693 36.000 0.00 0.00 39.06 2.66
5316 5883 6.777580 ACAATCCCAGTTCTATTGTCAGTTTT 59.222 34.615 0.00 0.00 39.06 2.43
5317 5884 6.824305 ATCCCAGTTCTATTGTCAGTTTTG 57.176 37.500 0.00 0.00 0.00 2.44
5318 5885 5.935945 TCCCAGTTCTATTGTCAGTTTTGA 58.064 37.500 0.00 0.00 0.00 2.69
5319 5886 6.361433 TCCCAGTTCTATTGTCAGTTTTGAA 58.639 36.000 0.00 0.00 34.49 2.69
5320 5887 6.831353 TCCCAGTTCTATTGTCAGTTTTGAAA 59.169 34.615 0.00 0.00 34.49 2.69
5321 5888 6.918022 CCCAGTTCTATTGTCAGTTTTGAAAC 59.082 38.462 0.00 0.00 39.17 2.78
5322 5889 7.416213 CCCAGTTCTATTGTCAGTTTTGAAACA 60.416 37.037 9.08 0.00 41.30 2.83
5323 5890 7.973388 CCAGTTCTATTGTCAGTTTTGAAACAA 59.027 33.333 9.08 0.00 41.30 2.83
5324 5891 9.352784 CAGTTCTATTGTCAGTTTTGAAACAAA 57.647 29.630 9.08 0.00 41.30 2.83
5325 5892 9.921637 AGTTCTATTGTCAGTTTTGAAACAAAA 57.078 25.926 9.08 5.70 41.30 2.44
5331 5898 8.655651 TTGTCAGTTTTGAAACAAAAAGAAGT 57.344 26.923 10.49 0.00 41.30 3.01
5332 5899 9.751542 TTGTCAGTTTTGAAACAAAAAGAAGTA 57.248 25.926 10.49 2.44 41.30 2.24
5333 5900 9.921637 TGTCAGTTTTGAAACAAAAAGAAGTAT 57.078 25.926 10.49 0.00 41.30 2.12
5360 5927 2.028112 TGACAGTCTCATAACAGCACCC 60.028 50.000 1.31 0.00 0.00 4.61
5377 5944 0.258774 CCCAAACGAATCCCCATCCT 59.741 55.000 0.00 0.00 0.00 3.24
5384 5951 2.578940 ACGAATCCCCATCCTTGGTAAA 59.421 45.455 0.00 0.00 41.91 2.01
5385 5952 3.010808 ACGAATCCCCATCCTTGGTAAAA 59.989 43.478 0.00 0.00 41.91 1.52
5402 5969 7.391148 TGGTAAAATACTGCTTTGATCTTCC 57.609 36.000 0.00 0.00 0.00 3.46
5418 5985 2.520982 CCAGGGCAGCATGGATGG 60.521 66.667 9.83 0.00 39.02 3.51
5422 5989 1.826921 GGGCAGCATGGATGGTCAG 60.827 63.158 0.00 0.00 36.17 3.51
5440 6007 3.001330 GTCAGTACACCATTTATCAGCGC 59.999 47.826 0.00 0.00 0.00 5.92
5441 6008 2.935849 CAGTACACCATTTATCAGCGCA 59.064 45.455 11.47 0.00 0.00 6.09
5525 6092 6.512415 GCATAAATTCTTTAGCACGCTGAGAT 60.512 38.462 0.72 0.00 0.00 2.75
5526 6093 4.871993 AATTCTTTAGCACGCTGAGATG 57.128 40.909 0.72 0.00 0.00 2.90
5527 6094 3.592898 TTCTTTAGCACGCTGAGATGA 57.407 42.857 0.72 0.00 0.00 2.92
5567 6134 8.859090 TGGTCATGAAGAAGTAAATCACATTTT 58.141 29.630 0.00 0.00 33.82 1.82
5568 6135 9.696917 GGTCATGAAGAAGTAAATCACATTTTT 57.303 29.630 0.00 0.00 33.82 1.94
5613 6180 0.106519 ATGTGGTAGATGGGGCAAGC 60.107 55.000 0.00 0.00 0.00 4.01
5614 6181 1.302949 GTGGTAGATGGGGCAAGCA 59.697 57.895 0.00 0.00 0.00 3.91
5615 6182 0.323360 GTGGTAGATGGGGCAAGCAA 60.323 55.000 0.00 0.00 0.00 3.91
5616 6183 0.034186 TGGTAGATGGGGCAAGCAAG 60.034 55.000 0.00 0.00 0.00 4.01
5631 6198 4.142730 GCAAGCAAGACTACTCATTTCCAG 60.143 45.833 0.00 0.00 0.00 3.86
5635 6202 3.618690 AGACTACTCATTTCCAGTGGC 57.381 47.619 3.51 0.00 0.00 5.01
5642 6209 0.896940 CATTTCCAGTGGCCACAGCT 60.897 55.000 36.39 14.89 39.73 4.24
5665 6232 1.562017 GCTAAACGCTCTGGACTAGC 58.438 55.000 0.00 0.00 36.60 3.42
5684 6251 7.392393 GGACTAGCCCTAACAAAACTATTTCAA 59.608 37.037 0.00 0.00 0.00 2.69
5690 6257 7.469456 GCCCTAACAAAACTATTTCAACTGTGA 60.469 37.037 0.00 0.00 0.00 3.58
5696 6263 9.301153 ACAAAACTATTTCAACTGTGACATTTC 57.699 29.630 0.00 0.00 31.90 2.17
5707 6274 6.949352 ACTGTGACATTTCTGACAAAAGAT 57.051 33.333 0.00 0.00 0.00 2.40
5724 6291 7.844009 ACAAAAGATGATCAAACTTATGCCAT 58.156 30.769 15.49 0.00 0.00 4.40
5744 6311 6.183361 TGCCATTAGAATCCATCACCAGAATA 60.183 38.462 0.00 0.00 0.00 1.75
5770 6337 3.288092 GGTTCTTTATGGTGCTAAGGGG 58.712 50.000 0.00 0.00 0.00 4.79
5777 6348 2.525105 TGGTGCTAAGGGGAAAATCC 57.475 50.000 0.00 0.00 35.23 3.01
5786 6357 6.900186 TGCTAAGGGGAAAATCCAATTCATTA 59.100 34.615 0.00 0.00 38.64 1.90
5799 6370 8.703378 ATCCAATTCATTATTTCTCTTCTCCC 57.297 34.615 0.00 0.00 0.00 4.30
5844 6415 4.718774 TCTCTATTCTCCAGCAAGACCATT 59.281 41.667 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 9.606631 GGAGTAAAATGAATGAATCTACACTCT 57.393 33.333 0.00 0.00 0.00 3.24
51 52 8.543774 CGGAGTAAAATGAATGAATCTACACTC 58.456 37.037 0.00 0.00 0.00 3.51
52 53 8.041323 ACGGAGTAAAATGAATGAATCTACACT 58.959 33.333 0.00 0.00 41.94 3.55
53 54 8.197988 ACGGAGTAAAATGAATGAATCTACAC 57.802 34.615 0.00 0.00 41.94 2.90
70 71 7.255555 TTCAACAAGTGACTACATACGGAGTAA 60.256 37.037 0.00 0.00 41.03 2.24
71 72 6.207221 TTCAACAAGTGACTACATACGGAGTA 59.793 38.462 0.00 0.00 41.66 2.59
72 73 5.010314 TTCAACAAGTGACTACATACGGAGT 59.990 40.000 0.00 0.00 39.84 3.85
73 74 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
74 75 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
75 76 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
76 77 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
77 78 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
78 79 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
79 80 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
80 81 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
81 82 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
82 83 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
83 84 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
84 85 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
85 86 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
86 87 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
87 88 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
88 89 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
89 90 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
90 91 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
91 92 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
92 93 7.224297 ACTACTTGTCTTTCTAGGCATTTCAA 58.776 34.615 0.00 0.00 35.56 2.69
93 94 6.769512 ACTACTTGTCTTTCTAGGCATTTCA 58.230 36.000 0.00 0.00 35.56 2.69
94 95 8.950208 ATACTACTTGTCTTTCTAGGCATTTC 57.050 34.615 0.00 0.00 35.56 2.17
95 96 9.740710 AAATACTACTTGTCTTTCTAGGCATTT 57.259 29.630 0.00 0.00 35.56 2.32
98 99 8.475639 CCTAAATACTACTTGTCTTTCTAGGCA 58.524 37.037 0.00 0.00 33.22 4.75
99 100 8.693625 TCCTAAATACTACTTGTCTTTCTAGGC 58.306 37.037 0.00 0.00 28.57 3.93
103 104 8.033626 CCGTTCCTAAATACTACTTGTCTTTCT 58.966 37.037 0.00 0.00 0.00 2.52
104 105 8.031277 TCCGTTCCTAAATACTACTTGTCTTTC 58.969 37.037 0.00 0.00 0.00 2.62
105 106 7.899973 TCCGTTCCTAAATACTACTTGTCTTT 58.100 34.615 0.00 0.00 0.00 2.52
106 107 7.363617 CCTCCGTTCCTAAATACTACTTGTCTT 60.364 40.741 0.00 0.00 0.00 3.01
107 108 6.096564 CCTCCGTTCCTAAATACTACTTGTCT 59.903 42.308 0.00 0.00 0.00 3.41
108 109 6.271566 CCTCCGTTCCTAAATACTACTTGTC 58.728 44.000 0.00 0.00 0.00 3.18
109 110 5.128335 CCCTCCGTTCCTAAATACTACTTGT 59.872 44.000 0.00 0.00 0.00 3.16
110 111 5.361857 TCCCTCCGTTCCTAAATACTACTTG 59.638 44.000 0.00 0.00 0.00 3.16
111 112 5.522641 TCCCTCCGTTCCTAAATACTACTT 58.477 41.667 0.00 0.00 0.00 2.24
112 113 5.134725 TCCCTCCGTTCCTAAATACTACT 57.865 43.478 0.00 0.00 0.00 2.57
113 114 4.892345 ACTCCCTCCGTTCCTAAATACTAC 59.108 45.833 0.00 0.00 0.00 2.73
114 115 5.134725 ACTCCCTCCGTTCCTAAATACTA 57.865 43.478 0.00 0.00 0.00 1.82
115 116 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
116 117 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
117 118 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
118 119 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
119 120 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
120 121 4.263905 TGTTACTACTCCCTCCGTTCCTAA 60.264 45.833 0.00 0.00 0.00 2.69
121 122 3.266772 TGTTACTACTCCCTCCGTTCCTA 59.733 47.826 0.00 0.00 0.00 2.94
122 123 2.042162 TGTTACTACTCCCTCCGTTCCT 59.958 50.000 0.00 0.00 0.00 3.36
123 124 2.450476 TGTTACTACTCCCTCCGTTCC 58.550 52.381 0.00 0.00 0.00 3.62
124 125 3.446516 ACATGTTACTACTCCCTCCGTTC 59.553 47.826 0.00 0.00 0.00 3.95
125 126 3.194968 CACATGTTACTACTCCCTCCGTT 59.805 47.826 0.00 0.00 0.00 4.44
126 127 2.758979 CACATGTTACTACTCCCTCCGT 59.241 50.000 0.00 0.00 0.00 4.69
127 128 2.481449 GCACATGTTACTACTCCCTCCG 60.481 54.545 0.00 0.00 0.00 4.63
128 129 2.500098 TGCACATGTTACTACTCCCTCC 59.500 50.000 0.00 0.00 0.00 4.30
129 130 3.887621 TGCACATGTTACTACTCCCTC 57.112 47.619 0.00 0.00 0.00 4.30
130 131 4.142609 CATGCACATGTTACTACTCCCT 57.857 45.455 0.00 0.00 34.23 4.20
142 143 7.776933 AACATAGACTAGTAACATGCACATG 57.223 36.000 9.06 9.06 44.15 3.21
143 144 9.698309 GATAACATAGACTAGTAACATGCACAT 57.302 33.333 0.00 0.00 0.00 3.21
144 145 8.691797 TGATAACATAGACTAGTAACATGCACA 58.308 33.333 0.00 0.00 0.00 4.57
145 146 8.969267 GTGATAACATAGACTAGTAACATGCAC 58.031 37.037 0.00 0.54 0.00 4.57
146 147 8.141909 GGTGATAACATAGACTAGTAACATGCA 58.858 37.037 0.00 0.00 0.00 3.96
147 148 7.599245 GGGTGATAACATAGACTAGTAACATGC 59.401 40.741 0.00 0.00 0.00 4.06
148 149 8.638873 TGGGTGATAACATAGACTAGTAACATG 58.361 37.037 0.00 2.36 0.00 3.21
149 150 8.777578 TGGGTGATAACATAGACTAGTAACAT 57.222 34.615 0.00 0.00 0.00 2.71
150 151 8.777578 ATGGGTGATAACATAGACTAGTAACA 57.222 34.615 0.00 0.00 0.00 2.41
151 152 9.477484 CAATGGGTGATAACATAGACTAGTAAC 57.523 37.037 0.00 0.00 0.00 2.50
152 153 9.209048 ACAATGGGTGATAACATAGACTAGTAA 57.791 33.333 0.00 0.00 0.00 2.24
153 154 8.777578 ACAATGGGTGATAACATAGACTAGTA 57.222 34.615 0.00 0.00 0.00 1.82
154 155 7.676683 ACAATGGGTGATAACATAGACTAGT 57.323 36.000 0.00 0.00 0.00 2.57
170 171 1.493854 TTAGACCGGCCACAATGGGT 61.494 55.000 0.00 0.00 38.19 4.51
171 172 0.748005 CTTAGACCGGCCACAATGGG 60.748 60.000 0.00 0.00 38.19 4.00
172 173 0.035439 ACTTAGACCGGCCACAATGG 60.035 55.000 0.00 0.00 41.55 3.16
173 174 2.684001 TACTTAGACCGGCCACAATG 57.316 50.000 0.00 0.00 0.00 2.82
174 175 3.340928 GTTTACTTAGACCGGCCACAAT 58.659 45.455 0.00 0.00 0.00 2.71
175 176 2.550639 GGTTTACTTAGACCGGCCACAA 60.551 50.000 0.00 0.00 0.00 3.33
176 177 1.002315 GGTTTACTTAGACCGGCCACA 59.998 52.381 0.00 0.00 0.00 4.17
177 178 1.002315 TGGTTTACTTAGACCGGCCAC 59.998 52.381 0.00 0.00 38.81 5.01
178 179 1.002315 GTGGTTTACTTAGACCGGCCA 59.998 52.381 0.00 0.00 38.81 5.36
179 180 1.002315 TGTGGTTTACTTAGACCGGCC 59.998 52.381 0.00 0.00 38.81 6.13
180 181 2.028748 TCTGTGGTTTACTTAGACCGGC 60.029 50.000 0.00 0.00 38.81 6.13
181 182 3.947910 TCTGTGGTTTACTTAGACCGG 57.052 47.619 0.00 0.00 38.81 5.28
182 183 6.700520 GGATTATCTGTGGTTTACTTAGACCG 59.299 42.308 0.00 0.00 38.81 4.79
183 184 7.562135 TGGATTATCTGTGGTTTACTTAGACC 58.438 38.462 0.00 0.00 36.45 3.85
184 185 9.099454 CTTGGATTATCTGTGGTTTACTTAGAC 57.901 37.037 0.00 0.00 0.00 2.59
185 186 7.769044 GCTTGGATTATCTGTGGTTTACTTAGA 59.231 37.037 0.00 0.00 0.00 2.10
186 187 7.012421 GGCTTGGATTATCTGTGGTTTACTTAG 59.988 40.741 0.00 0.00 0.00 2.18
187 188 6.826741 GGCTTGGATTATCTGTGGTTTACTTA 59.173 38.462 0.00 0.00 0.00 2.24
188 189 5.652452 GGCTTGGATTATCTGTGGTTTACTT 59.348 40.000 0.00 0.00 0.00 2.24
189 190 5.193679 GGCTTGGATTATCTGTGGTTTACT 58.806 41.667 0.00 0.00 0.00 2.24
190 191 4.947388 TGGCTTGGATTATCTGTGGTTTAC 59.053 41.667 0.00 0.00 0.00 2.01
191 192 4.947388 GTGGCTTGGATTATCTGTGGTTTA 59.053 41.667 0.00 0.00 0.00 2.01
200 201 4.202461 TGACTATGGGTGGCTTGGATTATC 60.202 45.833 0.00 0.00 0.00 1.75
210 211 1.282157 AGAAGGTTGACTATGGGTGGC 59.718 52.381 0.00 0.00 0.00 5.01
229 230 4.987912 GGCTCTAGAATCTTCCGAAATGAG 59.012 45.833 0.00 0.00 0.00 2.90
240 241 2.220313 GTCGTACGGGCTCTAGAATCT 58.780 52.381 16.52 0.00 0.00 2.40
371 373 5.125100 TGGGTTGTTTCGTAGTACAGTAG 57.875 43.478 0.38 0.00 0.00 2.57
374 376 3.124636 GCATGGGTTGTTTCGTAGTACAG 59.875 47.826 0.38 0.00 0.00 2.74
375 377 3.068560 GCATGGGTTGTTTCGTAGTACA 58.931 45.455 0.38 0.00 0.00 2.90
376 378 2.093152 CGCATGGGTTGTTTCGTAGTAC 59.907 50.000 0.68 0.00 0.00 2.73
454 470 4.803426 CGTCTGGCGACTGGAGGC 62.803 72.222 0.00 0.00 44.77 4.70
882 910 0.757188 CCTGGCTATCTGAGGGACGT 60.757 60.000 0.00 0.00 0.00 4.34
891 919 2.250031 CTGATCTCTGCCTGGCTATCT 58.750 52.381 21.03 0.47 0.00 1.98
895 923 2.071262 CCCTGATCTCTGCCTGGCT 61.071 63.158 21.03 0.00 0.00 4.75
998 1026 2.612212 ACATTCAACGAATCGGCCATAC 59.388 45.455 7.80 0.00 28.87 2.39
1070 1098 0.546122 TCTGCTTCCCACAACACTGT 59.454 50.000 0.00 0.00 35.63 3.55
1094 1122 0.246635 CCTCTCCAATTCACCGTCGT 59.753 55.000 0.00 0.00 0.00 4.34
1246 1274 0.117340 ACCAGCACCTCCTTACCTCT 59.883 55.000 0.00 0.00 0.00 3.69
1356 1385 4.763073 AGAATCATCTCGCTTCAACATCA 58.237 39.130 0.00 0.00 0.00 3.07
1495 1524 7.008266 CGTGTCTTCATACCAACATAATTTTGC 59.992 37.037 0.00 0.00 0.00 3.68
1497 1526 7.027161 GCGTGTCTTCATACCAACATAATTTT 58.973 34.615 0.00 0.00 0.00 1.82
1534 1809 0.890542 CAAAGGCACACCAGCTAGCA 60.891 55.000 18.83 0.00 39.06 3.49
1540 1815 1.967319 ACACTACAAAGGCACACCAG 58.033 50.000 0.00 0.00 39.06 4.00
1541 1816 3.407698 CATACACTACAAAGGCACACCA 58.592 45.455 0.00 0.00 39.06 4.17
1551 1826 3.334691 GTGAGCAAGGCATACACTACAA 58.665 45.455 0.00 0.00 0.00 2.41
1559 1834 3.118775 AGTGTAATCGTGAGCAAGGCATA 60.119 43.478 0.00 0.00 0.00 3.14
1580 1855 0.449388 GAAGCGCCATGACCTGAAAG 59.551 55.000 2.29 0.00 0.00 2.62
2124 2645 3.570125 TCGTGATTAGAATCATCTCGCCT 59.430 43.478 8.14 0.00 46.17 5.52
2125 2646 3.902150 TCGTGATTAGAATCATCTCGCC 58.098 45.455 8.14 0.00 46.17 5.54
2126 2647 5.232202 TGTTTCGTGATTAGAATCATCTCGC 59.768 40.000 8.14 1.59 46.17 5.03
2127 2648 6.693113 TCTGTTTCGTGATTAGAATCATCTCG 59.307 38.462 8.14 7.59 46.17 4.04
2128 2649 7.993821 TCTGTTTCGTGATTAGAATCATCTC 57.006 36.000 8.14 0.00 46.17 2.75
2129 2650 7.493971 CCTTCTGTTTCGTGATTAGAATCATCT 59.506 37.037 8.14 0.00 46.17 2.90
2130 2651 7.625553 CCTTCTGTTTCGTGATTAGAATCATC 58.374 38.462 8.14 2.50 46.17 2.92
2131 2652 6.037610 GCCTTCTGTTTCGTGATTAGAATCAT 59.962 38.462 8.14 0.00 46.17 2.45
2150 2671 3.565902 CGACCTCTTTTCTTTTGCCTTCT 59.434 43.478 0.00 0.00 0.00 2.85
2163 2684 1.841556 TGGCACCTCCGACCTCTTT 60.842 57.895 0.00 0.00 37.80 2.52
2185 2706 0.808125 TTGCGTATGATTGTGTGCCC 59.192 50.000 0.00 0.00 0.00 5.36
2200 2721 4.934075 TTGATGACTTGAGATTCTTGCG 57.066 40.909 0.00 0.00 0.00 4.85
2252 2773 4.133820 TCATACCAGCATAATTTCGTGGG 58.866 43.478 0.00 0.00 32.13 4.61
2266 2787 4.201657 TGATTGGCATGTCTTCATACCAG 58.798 43.478 0.00 0.00 45.05 4.00
2274 2795 3.928375 GCGAAAAATGATTGGCATGTCTT 59.072 39.130 0.00 0.00 37.28 3.01
2280 2801 3.058450 CACAAGCGAAAAATGATTGGCA 58.942 40.909 0.00 0.00 37.06 4.92
2295 2816 2.348411 ATATAGGCACACCCACAAGC 57.652 50.000 0.00 0.00 36.11 4.01
2298 2819 2.703536 CCACTATATAGGCACACCCACA 59.296 50.000 14.25 0.00 36.11 4.17
2313 2834 1.473965 CGTGAGCAAGGCATCCACTAT 60.474 52.381 0.00 0.00 0.00 2.12
2316 2837 0.745845 ATCGTGAGCAAGGCATCCAC 60.746 55.000 0.00 0.00 0.00 4.02
2393 2914 7.993183 CCAACCTCTTCTATTTTGCCTTCTATA 59.007 37.037 0.00 0.00 0.00 1.31
2396 2917 5.012893 CCAACCTCTTCTATTTTGCCTTCT 58.987 41.667 0.00 0.00 0.00 2.85
2442 2963 5.748152 CGACTTGAGATTCTTGGATCTTCTC 59.252 44.000 0.00 0.00 36.54 2.87
2522 3043 5.805486 TGAGTCGTCTGTAACATCATTTAGC 59.195 40.000 0.00 0.00 0.00 3.09
2538 3059 3.851976 ACTATGTCTTGGTGAGTCGTC 57.148 47.619 0.00 0.00 0.00 4.20
2539 3060 4.281182 AGAAACTATGTCTTGGTGAGTCGT 59.719 41.667 0.00 0.00 0.00 4.34
2563 3084 5.049167 GTCTTCTACCATTCATCTGCTCTG 58.951 45.833 0.00 0.00 0.00 3.35
2564 3085 4.961730 AGTCTTCTACCATTCATCTGCTCT 59.038 41.667 0.00 0.00 0.00 4.09
2586 3107 2.034842 CGCGCTTCCTTTCACGTAATAG 60.035 50.000 5.56 0.00 0.00 1.73
2620 3141 3.055094 GCTTCTAATCTCAGTGTTCCCCA 60.055 47.826 0.00 0.00 0.00 4.96
2622 3143 4.081420 TCTGCTTCTAATCTCAGTGTTCCC 60.081 45.833 0.00 0.00 0.00 3.97
2628 3149 2.478709 CGCGTCTGCTTCTAATCTCAGT 60.479 50.000 0.00 0.00 39.65 3.41
2644 3165 3.764049 GCACACGTCCTTCGCGTC 61.764 66.667 5.77 0.00 44.19 5.19
2666 3187 1.305297 ATGAGTCCTCGGAGTGCCA 60.305 57.895 4.02 0.00 0.00 4.92
2696 3217 4.985538 TGCCCTTTCTCTTCACATTAAGT 58.014 39.130 0.00 0.00 0.00 2.24
2724 3245 5.353400 TCACATTGATCTTGACAATCTCTGC 59.647 40.000 0.00 0.00 36.07 4.26
2768 3289 1.852895 GAGCGTATCACGTCAATCACC 59.147 52.381 0.26 0.00 44.73 4.02
2772 3293 0.870307 GCCGAGCGTATCACGTCAAT 60.870 55.000 0.26 0.00 44.73 2.57
2795 3316 1.068748 GCAACATGCTCTCCACACTTG 60.069 52.381 0.00 0.00 40.96 3.16
2807 3328 2.063156 TTTGATTGGTCGCAACATGC 57.937 45.000 0.00 0.00 40.69 4.06
2820 3341 8.472413 CACACCATCCTTATCTTCAATTTGATT 58.528 33.333 0.00 0.00 0.00 2.57
2929 3450 2.420022 CCAAGCGATTTAGGAACACTGG 59.580 50.000 0.00 0.00 0.00 4.00
2930 3451 3.074412 ACCAAGCGATTTAGGAACACTG 58.926 45.455 0.00 0.00 0.00 3.66
2950 3471 7.867909 CCTTTTTCTTCACATTTTTCCTAGGAC 59.132 37.037 12.22 0.00 0.00 3.85
2971 3495 3.876309 TCCTTGGAGTAGCAACCTTTT 57.124 42.857 0.00 0.00 0.00 2.27
2972 3496 3.876309 TTCCTTGGAGTAGCAACCTTT 57.124 42.857 0.00 0.00 0.00 3.11
2973 3497 3.394606 TCTTTCCTTGGAGTAGCAACCTT 59.605 43.478 0.00 0.00 0.00 3.50
3001 3525 4.041321 GTGTAGAAGGGGTAACTTTGGAGT 59.959 45.833 0.00 0.00 37.87 3.85
3064 3588 7.974501 CCAAAGATTTCTCATCATCTTTTGAGG 59.025 37.037 4.71 1.29 44.02 3.86
3065 3589 7.488471 GCCAAAGATTTCTCATCATCTTTTGAG 59.512 37.037 8.96 0.00 44.02 3.02
3066 3590 7.039574 TGCCAAAGATTTCTCATCATCTTTTGA 60.040 33.333 8.96 0.00 44.02 2.69
3067 3591 7.063074 GTGCCAAAGATTTCTCATCATCTTTTG 59.937 37.037 4.71 3.66 44.02 2.44
3068 3592 7.095270 GTGCCAAAGATTTCTCATCATCTTTT 58.905 34.615 4.71 0.00 44.02 2.27
3069 3593 6.624423 CGTGCCAAAGATTTCTCATCATCTTT 60.624 38.462 2.02 2.02 46.27 2.52
3093 3617 2.314561 TTTCTTTCATGCGCAAGTCG 57.685 45.000 17.11 3.29 42.12 4.18
3094 3618 7.969387 TTATTATTTCTTTCATGCGCAAGTC 57.031 32.000 17.11 0.00 41.68 3.01
3135 3659 0.255033 TCGGAAGGAGGACATCGAGA 59.745 55.000 0.00 0.00 0.00 4.04
3155 3679 5.410924 TCAATCTTATGAACACTCACCTCG 58.589 41.667 0.00 0.00 33.30 4.63
3158 3682 7.044181 TCTCATCAATCTTATGAACACTCACC 58.956 38.462 0.00 0.00 33.13 4.02
3159 3683 7.978414 TCTCTCATCAATCTTATGAACACTCAC 59.022 37.037 0.00 0.00 33.13 3.51
3168 3692 8.701540 CAATCGACTTCTCTCATCAATCTTATG 58.298 37.037 0.00 0.00 0.00 1.90
3195 3737 1.837439 TGGTACATCCTTTGGATCGCT 59.163 47.619 0.00 0.00 40.98 4.93
3210 3752 1.219935 CCCCCGCTACAAGTGGTAC 59.780 63.158 5.83 0.00 44.26 3.34
3232 3774 7.786030 TCCTTCACATTTGGTTTTTACATCAA 58.214 30.769 0.00 0.00 0.00 2.57
3244 3786 2.036217 TGCAAGCTTCCTTCACATTTGG 59.964 45.455 0.00 0.00 0.00 3.28
3276 3818 0.460987 GCTCTCACATGGTTCCTCGG 60.461 60.000 0.00 0.00 0.00 4.63
3283 3825 4.623932 TTAACAAGAGCTCTCACATGGT 57.376 40.909 18.55 12.90 0.00 3.55
3284 3826 4.940046 ACATTAACAAGAGCTCTCACATGG 59.060 41.667 18.55 7.11 0.00 3.66
3325 3867 6.151648 CACATTCACCTTGACATTATCTGGTT 59.848 38.462 0.00 0.00 34.20 3.67
3357 3899 3.964688 TCAAAGACCCGCCTATCATCTAA 59.035 43.478 0.00 0.00 0.00 2.10
3369 3911 3.433615 GTCTTGTCATCTTCAAAGACCCG 59.566 47.826 3.56 0.00 37.98 5.28
3393 3935 5.592688 TCCGAGTTCTTGAAATTTGGTTTCT 59.407 36.000 0.00 0.00 45.22 2.52
3401 3943 4.284746 ACTCCTCTCCGAGTTCTTGAAATT 59.715 41.667 0.00 0.00 40.23 1.82
3416 3958 4.863925 GAGCGCGCCACTCCTCTC 62.864 72.222 30.33 12.64 0.00 3.20
3489 4037 4.828072 ACTTATTCCCAGAGTCCTTGTC 57.172 45.455 0.00 0.00 0.00 3.18
3490 4038 4.597507 TGAACTTATTCCCAGAGTCCTTGT 59.402 41.667 0.00 0.00 33.49 3.16
3508 4056 5.360591 CACACTTAGACTCCTTTGTGAACT 58.639 41.667 0.00 0.00 37.17 3.01
3515 4063 2.986050 TCCCCACACTTAGACTCCTTT 58.014 47.619 0.00 0.00 0.00 3.11
3521 4069 4.162320 TGAAGATGATCCCCACACTTAGAC 59.838 45.833 0.00 0.00 0.00 2.59
3584 4132 6.941857 TGCTAATACAGTCATCTTGTTGGTA 58.058 36.000 0.00 0.00 0.00 3.25
3651 4199 6.042093 AGAGACTGAGAAACACCAACAATAGA 59.958 38.462 0.00 0.00 0.00 1.98
3652 4200 6.226787 AGAGACTGAGAAACACCAACAATAG 58.773 40.000 0.00 0.00 0.00 1.73
3658 4206 3.706594 AGTGAGAGACTGAGAAACACCAA 59.293 43.478 0.00 0.00 31.75 3.67
3709 4257 3.319122 GTCAGACAAACAAAGGCCTTCAT 59.681 43.478 20.79 7.09 0.00 2.57
3726 4274 7.632462 GCTCTCTTTTCCTTGAGATATGTCAGA 60.632 40.741 2.46 0.00 38.46 3.27
3812 4360 3.074412 GGGCGGATATATGACTTTGGTG 58.926 50.000 0.00 0.00 0.00 4.17
3855 4403 3.432749 CCATTAGTGCAGTCACAGCCTAT 60.433 47.826 0.00 0.00 45.49 2.57
3875 4423 0.888619 CACTAGAGTCCGAGCAACCA 59.111 55.000 0.00 0.00 0.00 3.67
4025 4573 5.152623 TGCCTAGCTAGGTTATGCTATTG 57.847 43.478 34.85 10.61 45.42 1.90
4080 4629 5.771469 CTGGCAATAAGAACATGTTGTCAA 58.229 37.500 17.58 4.47 35.97 3.18
4081 4630 4.321156 GCTGGCAATAAGAACATGTTGTCA 60.321 41.667 17.58 7.98 35.22 3.58
4105 4654 6.205464 CCATGCCAGAACTAGTATAACATTGG 59.795 42.308 0.00 0.00 0.00 3.16
4159 4708 4.137543 GAGACAGTTTCCCACATTTCACT 58.862 43.478 0.00 0.00 0.00 3.41
4177 4726 1.516603 GGCTTCGGCTGTACGAGAC 60.517 63.158 0.00 0.00 44.47 3.36
4193 4742 1.168714 CAACTTCCAGGTAAGCAGGC 58.831 55.000 0.00 0.00 0.00 4.85
4205 4754 6.795098 AACTTTTTGTCAAAACCAACTTCC 57.205 33.333 10.29 0.00 0.00 3.46
4306 4855 1.077005 ACCCTATTGTGGCATGTTGGT 59.923 47.619 0.00 0.00 0.00 3.67
4387 4936 5.970640 AGGGATAAAACTGAGGGATCTTACA 59.029 40.000 0.00 0.00 0.00 2.41
4429 4978 4.959839 TGCAATACCTCACCTACATACTCA 59.040 41.667 0.00 0.00 0.00 3.41
4522 5071 2.921126 TCGTCATCGTCATCATCATCG 58.079 47.619 0.00 0.00 38.33 3.84
4525 5074 3.988379 TCATCGTCATCGTCATCATCA 57.012 42.857 0.00 0.00 38.33 3.07
4528 5077 3.632189 GTCATCATCGTCATCGTCATCA 58.368 45.455 0.00 0.00 38.33 3.07
4529 5078 2.654056 CGTCATCATCGTCATCGTCATC 59.346 50.000 0.00 0.00 38.33 2.92
4530 5079 2.290641 TCGTCATCATCGTCATCGTCAT 59.709 45.455 0.00 0.00 38.33 3.06
4531 5080 1.668751 TCGTCATCATCGTCATCGTCA 59.331 47.619 0.00 0.00 38.33 4.35
4532 5081 2.384899 TCGTCATCATCGTCATCGTC 57.615 50.000 0.00 0.00 38.33 4.20
4533 5082 2.290641 TCATCGTCATCATCGTCATCGT 59.709 45.455 0.00 0.00 38.33 3.73
4534 5083 2.921126 TCATCGTCATCATCGTCATCG 58.079 47.619 0.00 0.00 38.55 3.84
4535 5084 4.540824 TCTTCATCGTCATCATCGTCATC 58.459 43.478 0.00 0.00 0.00 2.92
4536 5085 4.574599 TCTTCATCGTCATCATCGTCAT 57.425 40.909 0.00 0.00 0.00 3.06
4537 5086 4.370364 TTCTTCATCGTCATCATCGTCA 57.630 40.909 0.00 0.00 0.00 4.35
4538 5087 5.702622 TTTTCTTCATCGTCATCATCGTC 57.297 39.130 0.00 0.00 0.00 4.20
4539 5088 5.869344 TCTTTTTCTTCATCGTCATCATCGT 59.131 36.000 0.00 0.00 0.00 3.73
4540 5089 6.336514 TCTTTTTCTTCATCGTCATCATCG 57.663 37.500 0.00 0.00 0.00 3.84
4541 5090 8.393366 TGAATCTTTTTCTTCATCGTCATCATC 58.607 33.333 0.00 0.00 0.00 2.92
4542 5091 8.180267 GTGAATCTTTTTCTTCATCGTCATCAT 58.820 33.333 0.00 0.00 34.18 2.45
4543 5092 7.173047 TGTGAATCTTTTTCTTCATCGTCATCA 59.827 33.333 0.00 0.00 34.18 3.07
4544 5093 7.521529 TGTGAATCTTTTTCTTCATCGTCATC 58.478 34.615 0.00 0.00 34.18 2.92
4545 5094 7.439157 TGTGAATCTTTTTCTTCATCGTCAT 57.561 32.000 0.00 0.00 34.18 3.06
4546 5095 6.859420 TGTGAATCTTTTTCTTCATCGTCA 57.141 33.333 0.00 0.00 34.18 4.35
4547 5096 8.233190 AGATTGTGAATCTTTTTCTTCATCGTC 58.767 33.333 0.00 0.00 45.75 4.20
4548 5097 8.103948 AGATTGTGAATCTTTTTCTTCATCGT 57.896 30.769 0.00 0.00 45.75 3.73
4563 5112 8.206867 TCATCTCGGATTTAGAAGATTGTGAAT 58.793 33.333 0.00 0.00 0.00 2.57
4568 5117 6.073873 GCTGTCATCTCGGATTTAGAAGATTG 60.074 42.308 0.00 0.00 0.00 2.67
4664 5213 1.271379 CTGTGCATGCATGTTTGGAGT 59.729 47.619 25.64 0.00 0.00 3.85
4710 5259 1.888215 CATAACATGCGGCATCCTCT 58.112 50.000 13.53 0.33 0.00 3.69
4756 5305 9.674824 TTATAATCGTAAGTAAGCTCTTGTAGC 57.325 33.333 0.00 0.00 45.79 3.58
4780 5329 8.834749 TGCGCACATTACCTATGTTATAATTA 57.165 30.769 5.66 0.00 45.19 1.40
4837 5386 1.557443 GGCACTTCGACGAACCACAG 61.557 60.000 6.10 0.00 0.00 3.66
4840 5389 2.355363 CGGCACTTCGACGAACCA 60.355 61.111 6.10 0.00 0.00 3.67
4879 5428 4.842531 ACATTACCATCATCAGTCACCA 57.157 40.909 0.00 0.00 0.00 4.17
4888 5437 6.348458 CGCCGAAATATGAACATTACCATCAT 60.348 38.462 0.00 0.00 37.54 2.45
4917 5466 3.871248 CTGCGCTGACAGGACTGCA 62.871 63.158 9.73 2.77 35.10 4.41
4933 5482 2.564947 AGAGTAAGACCAAGGAGCACTG 59.435 50.000 0.00 0.00 0.00 3.66
4970 5520 2.715046 ACATCACAAGCCATCGACAAT 58.285 42.857 0.00 0.00 0.00 2.71
4972 5522 2.183478 AACATCACAAGCCATCGACA 57.817 45.000 0.00 0.00 0.00 4.35
5069 5619 3.057734 CAGTACAGGTTCGGTTCTGAAC 58.942 50.000 12.05 12.05 45.91 3.18
5149 5699 6.531594 GGAATAATGCTTAAAAGGACAGCAAC 59.468 38.462 0.00 0.00 46.35 4.17
5207 5758 1.827344 AGAATGCTTAAAAGGGCAGCC 59.173 47.619 1.26 1.26 41.88 4.85
5250 5817 8.601546 GGATTCAGAACTGGGAATCTATCTATT 58.398 37.037 12.47 0.00 45.46 1.73
5254 5821 5.011125 TCGGATTCAGAACTGGGAATCTATC 59.989 44.000 12.47 0.00 45.46 2.08
5255 5822 4.901849 TCGGATTCAGAACTGGGAATCTAT 59.098 41.667 12.47 0.00 45.46 1.98
5256 5823 4.099573 GTCGGATTCAGAACTGGGAATCTA 59.900 45.833 12.47 1.73 45.46 1.98
5257 5824 3.107601 TCGGATTCAGAACTGGGAATCT 58.892 45.455 12.47 0.00 45.46 2.40
5258 5825 3.198872 GTCGGATTCAGAACTGGGAATC 58.801 50.000 0.00 0.00 45.44 2.52
5259 5826 2.571653 TGTCGGATTCAGAACTGGGAAT 59.428 45.455 1.93 0.00 36.49 3.01
5260 5827 1.974957 TGTCGGATTCAGAACTGGGAA 59.025 47.619 1.93 0.00 0.00 3.97
5261 5828 1.275291 GTGTCGGATTCAGAACTGGGA 59.725 52.381 1.93 0.00 0.00 4.37
5262 5829 1.276421 AGTGTCGGATTCAGAACTGGG 59.724 52.381 1.93 0.00 0.00 4.45
5263 5830 2.751166 AGTGTCGGATTCAGAACTGG 57.249 50.000 1.93 0.00 0.00 4.00
5264 5831 6.727824 ATTTAAGTGTCGGATTCAGAACTG 57.272 37.500 0.00 0.00 0.00 3.16
5265 5832 6.149474 CCAATTTAAGTGTCGGATTCAGAACT 59.851 38.462 0.00 0.00 0.00 3.01
5266 5833 6.148811 TCCAATTTAAGTGTCGGATTCAGAAC 59.851 38.462 0.00 0.00 0.00 3.01
5267 5834 6.148811 GTCCAATTTAAGTGTCGGATTCAGAA 59.851 38.462 0.00 0.00 0.00 3.02
5268 5835 5.642063 GTCCAATTTAAGTGTCGGATTCAGA 59.358 40.000 0.00 0.00 0.00 3.27
5269 5836 5.411361 TGTCCAATTTAAGTGTCGGATTCAG 59.589 40.000 0.00 0.00 0.00 3.02
5270 5837 5.309638 TGTCCAATTTAAGTGTCGGATTCA 58.690 37.500 0.00 0.00 0.00 2.57
5271 5838 5.873179 TGTCCAATTTAAGTGTCGGATTC 57.127 39.130 0.00 0.00 0.00 2.52
5272 5839 6.127730 GGATTGTCCAATTTAAGTGTCGGATT 60.128 38.462 0.00 0.00 36.28 3.01
5273 5840 5.357032 GGATTGTCCAATTTAAGTGTCGGAT 59.643 40.000 0.00 0.00 36.28 4.18
5274 5841 4.698304 GGATTGTCCAATTTAAGTGTCGGA 59.302 41.667 0.00 0.00 36.28 4.55
5275 5842 4.142469 GGGATTGTCCAATTTAAGTGTCGG 60.142 45.833 0.00 0.00 38.64 4.79
5276 5843 4.457603 TGGGATTGTCCAATTTAAGTGTCG 59.542 41.667 0.00 0.00 38.64 4.35
5277 5844 5.476945 ACTGGGATTGTCCAATTTAAGTGTC 59.523 40.000 0.00 0.00 38.64 3.67
5278 5845 5.393866 ACTGGGATTGTCCAATTTAAGTGT 58.606 37.500 0.00 0.00 38.64 3.55
5279 5846 5.982890 ACTGGGATTGTCCAATTTAAGTG 57.017 39.130 0.00 0.00 38.64 3.16
5280 5847 6.314917 AGAACTGGGATTGTCCAATTTAAGT 58.685 36.000 0.00 0.00 38.64 2.24
5281 5848 6.840780 AGAACTGGGATTGTCCAATTTAAG 57.159 37.500 0.00 0.00 38.64 1.85
5282 5849 8.748412 CAATAGAACTGGGATTGTCCAATTTAA 58.252 33.333 0.00 0.00 38.64 1.52
5283 5850 7.893302 ACAATAGAACTGGGATTGTCCAATTTA 59.107 33.333 0.00 0.00 39.06 1.40
5284 5851 6.725834 ACAATAGAACTGGGATTGTCCAATTT 59.274 34.615 0.00 0.00 39.06 1.82
5285 5852 6.256053 ACAATAGAACTGGGATTGTCCAATT 58.744 36.000 0.00 0.00 39.06 2.32
5286 5853 5.831103 ACAATAGAACTGGGATTGTCCAAT 58.169 37.500 0.00 0.00 39.06 3.16
5287 5854 5.255397 ACAATAGAACTGGGATTGTCCAA 57.745 39.130 0.00 0.00 39.06 3.53
5288 5855 4.927267 ACAATAGAACTGGGATTGTCCA 57.073 40.909 0.00 0.00 39.06 4.02
5291 5858 5.505181 ACTGACAATAGAACTGGGATTGT 57.495 39.130 0.00 0.00 44.43 2.71
5292 5859 6.824305 AAACTGACAATAGAACTGGGATTG 57.176 37.500 0.00 0.00 36.77 2.67
5293 5860 7.004086 TCAAAACTGACAATAGAACTGGGATT 58.996 34.615 0.00 0.00 0.00 3.01
5294 5861 6.542821 TCAAAACTGACAATAGAACTGGGAT 58.457 36.000 0.00 0.00 0.00 3.85
5295 5862 5.935945 TCAAAACTGACAATAGAACTGGGA 58.064 37.500 0.00 0.00 0.00 4.37
5296 5863 6.633500 TTCAAAACTGACAATAGAACTGGG 57.367 37.500 0.00 0.00 0.00 4.45
5297 5864 7.479980 TGTTTCAAAACTGACAATAGAACTGG 58.520 34.615 7.12 0.00 39.59 4.00
5298 5865 8.909708 TTGTTTCAAAACTGACAATAGAACTG 57.090 30.769 7.12 0.00 39.59 3.16
5299 5866 9.921637 TTTTGTTTCAAAACTGACAATAGAACT 57.078 25.926 7.12 0.00 39.59 3.01
5305 5872 9.271828 ACTTCTTTTTGTTTCAAAACTGACAAT 57.728 25.926 7.08 0.00 39.59 2.71
5306 5873 8.655651 ACTTCTTTTTGTTTCAAAACTGACAA 57.344 26.923 7.08 0.00 39.59 3.18
5307 5874 9.921637 ATACTTCTTTTTGTTTCAAAACTGACA 57.078 25.926 7.08 0.00 39.59 3.58
5323 5890 9.832445 TGAGACTGTCAAGTAAATACTTCTTTT 57.168 29.630 10.88 0.00 44.19 2.27
5329 5896 9.862371 CTGTTATGAGACTGTCAAGTAAATACT 57.138 33.333 10.88 0.00 39.19 2.12
5330 5897 8.596380 GCTGTTATGAGACTGTCAAGTAAATAC 58.404 37.037 10.88 0.00 39.19 1.89
5331 5898 8.311109 TGCTGTTATGAGACTGTCAAGTAAATA 58.689 33.333 10.88 0.00 39.19 1.40
5332 5899 7.118390 GTGCTGTTATGAGACTGTCAAGTAAAT 59.882 37.037 10.88 0.00 39.19 1.40
5333 5900 6.423905 GTGCTGTTATGAGACTGTCAAGTAAA 59.576 38.462 10.88 0.00 39.19 2.01
5334 5901 5.926542 GTGCTGTTATGAGACTGTCAAGTAA 59.073 40.000 10.88 3.07 39.19 2.24
5335 5902 5.470368 GTGCTGTTATGAGACTGTCAAGTA 58.530 41.667 10.88 0.00 39.19 2.24
5336 5903 4.310769 GTGCTGTTATGAGACTGTCAAGT 58.689 43.478 10.88 0.00 39.19 3.16
5337 5904 3.681897 GGTGCTGTTATGAGACTGTCAAG 59.318 47.826 10.88 0.00 39.19 3.02
5338 5905 3.557054 GGGTGCTGTTATGAGACTGTCAA 60.557 47.826 10.88 0.00 39.19 3.18
5339 5906 2.028112 GGGTGCTGTTATGAGACTGTCA 60.028 50.000 10.88 0.00 40.38 3.58
5347 5914 2.552599 TCGTTTGGGTGCTGTTATGA 57.447 45.000 0.00 0.00 0.00 2.15
5360 5927 1.750778 CCAAGGATGGGGATTCGTTTG 59.249 52.381 0.00 0.00 43.51 2.93
5377 5944 7.450014 TGGAAGATCAAAGCAGTATTTTACCAA 59.550 33.333 0.00 0.00 0.00 3.67
5384 5951 4.530875 CCCTGGAAGATCAAAGCAGTATT 58.469 43.478 0.00 0.00 34.07 1.89
5385 5952 3.686691 GCCCTGGAAGATCAAAGCAGTAT 60.687 47.826 0.00 0.00 34.07 2.12
5402 5969 1.826921 GACCATCCATGCTGCCCTG 60.827 63.158 0.00 0.00 0.00 4.45
5418 5985 3.001330 GCGCTGATAAATGGTGTACTGAC 59.999 47.826 0.00 0.00 0.00 3.51
5422 5989 2.285602 CGTGCGCTGATAAATGGTGTAC 60.286 50.000 9.73 0.00 0.00 2.90
5486 6053 4.708726 ATTTATGCAGGCTTCTCACAAC 57.291 40.909 0.00 0.00 0.00 3.32
5525 6092 7.757941 TCATGACCATAAAACTGACATTTCA 57.242 32.000 0.00 0.00 0.00 2.69
5526 6093 8.514594 TCTTCATGACCATAAAACTGACATTTC 58.485 33.333 0.00 0.00 0.00 2.17
5527 6094 8.408043 TCTTCATGACCATAAAACTGACATTT 57.592 30.769 0.00 0.00 0.00 2.32
5571 6138 9.407380 ACATGCCAAATGTGATTTACTTCTATA 57.593 29.630 0.00 0.00 0.00 1.31
5572 6139 8.297470 ACATGCCAAATGTGATTTACTTCTAT 57.703 30.769 0.00 0.00 0.00 1.98
5573 6140 7.701539 ACATGCCAAATGTGATTTACTTCTA 57.298 32.000 0.00 0.00 0.00 2.10
5574 6141 6.594788 ACATGCCAAATGTGATTTACTTCT 57.405 33.333 0.00 0.00 0.00 2.85
5584 6151 3.181484 CCATCTACCACATGCCAAATGTG 60.181 47.826 10.77 10.77 46.49 3.21
5585 6152 3.025978 CCATCTACCACATGCCAAATGT 58.974 45.455 0.00 0.00 0.00 2.71
5586 6153 2.363038 CCCATCTACCACATGCCAAATG 59.637 50.000 0.00 0.00 0.00 2.32
5587 6154 2.669781 CCCATCTACCACATGCCAAAT 58.330 47.619 0.00 0.00 0.00 2.32
5588 6155 1.341877 CCCCATCTACCACATGCCAAA 60.342 52.381 0.00 0.00 0.00 3.28
5589 6156 0.258484 CCCCATCTACCACATGCCAA 59.742 55.000 0.00 0.00 0.00 4.52
5590 6157 1.922057 CCCCATCTACCACATGCCA 59.078 57.895 0.00 0.00 0.00 4.92
5613 6180 3.686726 GCCACTGGAAATGAGTAGTCTTG 59.313 47.826 0.00 0.00 0.00 3.02
5614 6181 3.307762 GGCCACTGGAAATGAGTAGTCTT 60.308 47.826 0.00 0.00 0.00 3.01
5615 6182 2.237392 GGCCACTGGAAATGAGTAGTCT 59.763 50.000 0.00 0.00 0.00 3.24
5616 6183 2.027192 TGGCCACTGGAAATGAGTAGTC 60.027 50.000 0.00 0.00 0.00 2.59
5660 6227 7.942894 AGTTGAAATAGTTTTGTTAGGGCTAGT 59.057 33.333 0.00 0.00 0.00 2.57
5661 6228 8.237267 CAGTTGAAATAGTTTTGTTAGGGCTAG 58.763 37.037 0.00 0.00 0.00 3.42
5663 6230 6.549736 ACAGTTGAAATAGTTTTGTTAGGGCT 59.450 34.615 0.00 0.00 0.00 5.19
5665 6232 7.860872 GTCACAGTTGAAATAGTTTTGTTAGGG 59.139 37.037 0.00 0.00 31.90 3.53
5684 6251 6.543465 TCATCTTTTGTCAGAAATGTCACAGT 59.457 34.615 0.00 0.00 0.00 3.55
5690 6257 8.636213 AGTTTGATCATCTTTTGTCAGAAATGT 58.364 29.630 0.00 0.00 0.00 2.71
5696 6263 7.487189 GGCATAAGTTTGATCATCTTTTGTCAG 59.513 37.037 20.04 6.73 29.88 3.51
5707 6274 7.779326 TGGATTCTAATGGCATAAGTTTGATCA 59.221 33.333 0.00 0.00 0.00 2.92
5724 6291 8.159447 CCAAGATATTCTGGTGATGGATTCTAA 58.841 37.037 0.00 0.00 0.00 2.10
5744 6311 5.888161 CCTTAGCACCATAAAGAACCAAGAT 59.112 40.000 0.00 0.00 0.00 2.40
5777 6348 6.514048 GCGGGGAGAAGAGAAATAATGAATTG 60.514 42.308 0.00 0.00 0.00 2.32
5786 6357 0.984230 TGTGCGGGGAGAAGAGAAAT 59.016 50.000 0.00 0.00 0.00 2.17
5844 6415 1.967535 CCTGAGCAGGTCGAGAACA 59.032 57.895 8.38 0.00 43.61 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.