Multiple sequence alignment - TraesCS5A01G195900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G195900 chr5A 100.000 6092 0 0 1 6092 398932410 398926319 0.000000e+00 11250
1 TraesCS5A01G195900 chr5D 92.386 3848 195 42 2283 6085 298859804 298863598 0.000000e+00 5393
2 TraesCS5A01G195900 chr5D 89.673 1588 108 25 735 2290 298857555 298859118 0.000000e+00 1973
3 TraesCS5A01G195900 chr5D 82.440 746 96 23 6 738 298771500 298772223 2.410000e-173 619
4 TraesCS5A01G195900 chr5B 93.258 2299 100 24 3815 6082 339533747 339536021 0.000000e+00 3336
5 TraesCS5A01G195900 chr5B 89.727 1538 100 17 1542 3052 339530849 339532355 0.000000e+00 1912
6 TraesCS5A01G195900 chr5B 93.809 743 34 3 3058 3797 339532878 339533611 0.000000e+00 1107
7 TraesCS5A01G195900 chr5B 91.667 648 34 9 903 1538 339530122 339530761 0.000000e+00 880
8 TraesCS5A01G195900 chr5B 81.325 332 42 9 592 918 339529656 339529972 1.010000e-62 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G195900 chr5A 398926319 398932410 6091 True 11250.0 11250 100.0000 1 6092 1 chr5A.!!$R1 6091
1 TraesCS5A01G195900 chr5D 298857555 298863598 6043 False 3683.0 5393 91.0295 735 6085 2 chr5D.!!$F2 5350
2 TraesCS5A01G195900 chr5D 298771500 298772223 723 False 619.0 619 82.4400 6 738 1 chr5D.!!$F1 732
3 TraesCS5A01G195900 chr5B 339529656 339536021 6365 False 1497.4 3336 89.9572 592 6082 5 chr5B.!!$F1 5490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.108186 TGGCTCGCGTGATCTGATTT 60.108 50.000 13.13 0.00 0.0 2.17 F
985 1173 0.109551 CGGCAACACACACACACAAA 60.110 50.000 0.00 0.00 0.0 2.83 F
1327 1526 0.030638 CCACCTTGTGTTTGCGGAAG 59.969 55.000 0.00 0.00 0.0 3.46 F
1741 2042 0.179018 AACTGTTTCGGGAGCTTGCT 60.179 50.000 0.00 0.00 0.0 3.91 F
2715 3724 0.329261 TTCTCAATGGGGCCTCACAG 59.671 55.000 7.99 4.23 0.0 3.66 F
3134 4668 0.479589 TTCTCTCCCCCAACCCCAAT 60.480 55.000 0.00 0.00 0.0 3.16 F
3228 4762 1.611491 TGAAGTTCGGGCCAAAATGAC 59.389 47.619 4.39 0.00 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1327 1526 0.179150 CTACAGAGCGACAGAGGCAC 60.179 60.000 0.00 0.0 0.00 5.01 R
2723 3732 0.816825 AACAGTCAGCCACACAGCAG 60.817 55.000 0.00 0.0 34.23 4.24 R
3228 4762 0.537653 TGGATGGGTGCAATGCAATG 59.462 50.000 10.44 0.0 41.47 2.82 R
3229 4763 0.538118 GTGGATGGGTGCAATGCAAT 59.462 50.000 10.44 0.0 41.47 3.56 R
3788 5325 0.552848 AGCTGGAGAGAGGAGAGAGG 59.447 60.000 0.00 0.0 0.00 3.69 R
3945 5615 1.071385 GAGGCCATGTCCACATCCTAG 59.929 57.143 5.01 0.0 32.59 3.02 R
5127 6823 1.301953 GGAGCCCGGTACACGTTTT 60.302 57.895 0.00 0.0 42.24 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.889995 CCAGGTCTTCCTTTGTTCTCTTTT 59.110 41.667 0.00 0.00 43.07 2.27
28 29 5.590259 CAGGTCTTCCTTTGTTCTCTTTTGA 59.410 40.000 0.00 0.00 43.07 2.69
31 32 8.166726 AGGTCTTCCTTTGTTCTCTTTTGATAT 58.833 33.333 0.00 0.00 42.12 1.63
32 33 8.454894 GGTCTTCCTTTGTTCTCTTTTGATATC 58.545 37.037 0.00 0.00 0.00 1.63
41 42 6.871492 TGTTCTCTTTTGATATCGTAGTTGCA 59.129 34.615 0.00 0.00 0.00 4.08
46 47 5.733226 TTTGATATCGTAGTTGCATGTGG 57.267 39.130 0.00 0.00 0.00 4.17
48 49 2.979814 TATCGTAGTTGCATGTGGCT 57.020 45.000 0.00 0.00 45.15 4.75
52 53 2.100031 TAGTTGCATGTGGCTCGCG 61.100 57.895 0.00 0.00 45.15 5.87
58 59 1.520120 CATGTGGCTCGCGTGATCT 60.520 57.895 13.13 0.00 33.25 2.75
63 64 0.108186 TGGCTCGCGTGATCTGATTT 60.108 50.000 13.13 0.00 0.00 2.17
64 65 1.136110 TGGCTCGCGTGATCTGATTTA 59.864 47.619 13.13 0.00 0.00 1.40
65 66 2.224042 TGGCTCGCGTGATCTGATTTAT 60.224 45.455 13.13 0.00 0.00 1.40
67 68 2.410053 GCTCGCGTGATCTGATTTATCC 59.590 50.000 13.13 0.00 0.00 2.59
68 69 3.858877 GCTCGCGTGATCTGATTTATCCT 60.859 47.826 13.13 0.00 0.00 3.24
70 71 3.317993 TCGCGTGATCTGATTTATCCTGA 59.682 43.478 5.77 0.00 0.00 3.86
76 77 6.098679 GTGATCTGATTTATCCTGAGATCGG 58.901 44.000 0.00 0.00 41.26 4.18
84 85 0.454600 TCCTGAGATCGGCGTTGTAC 59.545 55.000 6.85 0.00 0.00 2.90
85 86 0.866061 CCTGAGATCGGCGTTGTACG 60.866 60.000 6.85 0.00 45.88 3.67
109 110 4.469657 GGGCTACCCATCATTTTGTATCA 58.530 43.478 0.00 0.00 44.65 2.15
112 113 6.041979 GGGCTACCCATCATTTTGTATCATTT 59.958 38.462 0.00 0.00 44.65 2.32
114 115 6.925165 GCTACCCATCATTTTGTATCATTTGG 59.075 38.462 0.00 0.00 0.00 3.28
116 117 5.058490 CCCATCATTTTGTATCATTTGGCC 58.942 41.667 0.00 0.00 0.00 5.36
122 123 4.688511 TTTGTATCATTTGGCCGTGTAC 57.311 40.909 0.00 3.87 0.00 2.90
129 130 4.328536 TCATTTGGCCGTGTACTATGTTT 58.671 39.130 0.00 0.00 0.00 2.83
161 169 8.398878 CTTTATATATAAAGCGGGGGTGAAAA 57.601 34.615 25.10 1.13 41.69 2.29
192 200 7.334844 TCGAGAGATAAGAAGTGCTTGATTA 57.665 36.000 0.00 0.00 34.71 1.75
225 233 4.333649 CACGACACCATATTCATTGCTTCT 59.666 41.667 0.00 0.00 0.00 2.85
233 241 9.241317 CACCATATTCATTGCTTCTTTACAATC 57.759 33.333 0.00 0.00 34.32 2.67
242 250 5.804639 TGCTTCTTTACAATCTCCTAAGCA 58.195 37.500 0.00 0.00 44.04 3.91
245 253 6.374417 TTCTTTACAATCTCCTAAGCACCT 57.626 37.500 0.00 0.00 0.00 4.00
246 254 5.734720 TCTTTACAATCTCCTAAGCACCTG 58.265 41.667 0.00 0.00 0.00 4.00
248 256 5.957771 TTACAATCTCCTAAGCACCTGAT 57.042 39.130 0.00 0.00 0.00 2.90
260 268 4.574674 AGCACCTGATTTGGACTATGAA 57.425 40.909 0.00 0.00 0.00 2.57
263 271 6.845908 AGCACCTGATTTGGACTATGAATAT 58.154 36.000 0.00 0.00 0.00 1.28
275 283 9.739276 TTGGACTATGAATATATTTCCATCCAC 57.261 33.333 13.96 4.08 33.83 4.02
288 296 7.872113 ATTTCCATCCACTCTTCTTCATAAC 57.128 36.000 0.00 0.00 0.00 1.89
294 302 7.201767 CCATCCACTCTTCTTCATAACATTTCC 60.202 40.741 0.00 0.00 0.00 3.13
295 303 7.020827 TCCACTCTTCTTCATAACATTTCCT 57.979 36.000 0.00 0.00 0.00 3.36
297 305 7.944554 TCCACTCTTCTTCATAACATTTCCTTT 59.055 33.333 0.00 0.00 0.00 3.11
301 309 7.596494 TCTTCTTCATAACATTTCCTTTGCTG 58.404 34.615 0.00 0.00 0.00 4.41
306 314 7.243604 TCATAACATTTCCTTTGCTGGATTT 57.756 32.000 0.00 0.00 35.83 2.17
310 318 5.484715 ACATTTCCTTTGCTGGATTTCATG 58.515 37.500 0.00 0.00 35.83 3.07
323 331 3.547613 GGATTTCATGAAGAGCGCATGTC 60.548 47.826 11.47 3.41 42.77 3.06
325 333 0.249955 TCATGAAGAGCGCATGTCCA 59.750 50.000 11.47 0.46 42.77 4.02
328 336 0.250252 TGAAGAGCGCATGTCCACAA 60.250 50.000 11.47 0.00 0.00 3.33
330 338 0.877071 AAGAGCGCATGTCCACAAAG 59.123 50.000 11.47 0.00 0.00 2.77
376 385 2.412112 ACCTTCGCGGTCGATAGC 59.588 61.111 6.13 5.17 44.93 2.97
380 389 2.337749 CTTCGCGGTCGATAGCCACT 62.338 60.000 6.13 0.00 45.04 4.00
385 394 0.373716 CGGTCGATAGCCACTTTTGC 59.626 55.000 0.00 0.00 33.33 3.68
401 410 1.361204 TTGCCTTCTCCAGTGGATCA 58.639 50.000 13.56 0.00 0.00 2.92
412 421 5.128499 TCTCCAGTGGATCAGAGATTTCTTC 59.872 44.000 13.56 0.00 30.56 2.87
414 423 5.486775 TCCAGTGGATCAGAGATTTCTTCTT 59.513 40.000 8.12 0.00 33.74 2.52
415 424 5.816777 CCAGTGGATCAGAGATTTCTTCTTC 59.183 44.000 1.68 0.00 33.74 2.87
423 432 4.453819 CAGAGATTTCTTCTTCCCACACAC 59.546 45.833 0.00 0.00 33.74 3.82
424 433 3.403038 AGATTTCTTCTTCCCACACACG 58.597 45.455 0.00 0.00 0.00 4.49
436 445 1.502231 CACACACGCTCTGCTTAGTT 58.498 50.000 0.00 0.00 0.00 2.24
443 452 3.743396 CACGCTCTGCTTAGTTTTCTTCT 59.257 43.478 0.00 0.00 0.00 2.85
445 454 5.405571 CACGCTCTGCTTAGTTTTCTTCTTA 59.594 40.000 0.00 0.00 0.00 2.10
447 456 5.443431 CGCTCTGCTTAGTTTTCTTCTTACG 60.443 44.000 0.00 0.00 0.00 3.18
451 460 8.018677 TCTGCTTAGTTTTCTTCTTACGAATG 57.981 34.615 0.00 0.00 0.00 2.67
454 463 7.075741 GCTTAGTTTTCTTCTTACGAATGCAA 58.924 34.615 0.00 0.00 0.00 4.08
455 464 7.750903 GCTTAGTTTTCTTCTTACGAATGCAAT 59.249 33.333 0.00 0.00 0.00 3.56
456 465 9.612620 CTTAGTTTTCTTCTTACGAATGCAATT 57.387 29.630 0.00 0.00 40.93 2.32
457 466 9.959749 TTAGTTTTCTTCTTACGAATGCAATTT 57.040 25.926 0.00 0.00 36.07 1.82
462 471 6.173339 TCTTCTTACGAATGCAATTTCTCCT 58.827 36.000 0.00 0.00 36.07 3.69
475 484 2.151502 TTCTCCTGAAGAGCCTCGAT 57.848 50.000 0.00 0.00 42.90 3.59
476 485 3.298686 TTCTCCTGAAGAGCCTCGATA 57.701 47.619 0.00 0.00 42.90 2.92
481 490 4.321156 CTCCTGAAGAGCCTCGATAGAATG 60.321 50.000 0.00 0.00 39.69 2.67
495 504 4.400884 CGATAGAATGCCTAGCAGACCTAT 59.599 45.833 0.00 2.32 39.99 2.57
500 509 2.477245 TGCCTAGCAGACCTATCCAAA 58.523 47.619 0.00 0.00 33.32 3.28
501 510 2.843730 TGCCTAGCAGACCTATCCAAAA 59.156 45.455 0.00 0.00 33.32 2.44
502 511 3.265737 TGCCTAGCAGACCTATCCAAAAA 59.734 43.478 0.00 0.00 33.32 1.94
503 512 4.079787 TGCCTAGCAGACCTATCCAAAAAT 60.080 41.667 0.00 0.00 33.32 1.82
504 513 4.517075 GCCTAGCAGACCTATCCAAAAATC 59.483 45.833 0.00 0.00 0.00 2.17
505 514 5.066593 CCTAGCAGACCTATCCAAAAATCC 58.933 45.833 0.00 0.00 0.00 3.01
506 515 4.591321 AGCAGACCTATCCAAAAATCCA 57.409 40.909 0.00 0.00 0.00 3.41
507 516 4.934356 AGCAGACCTATCCAAAAATCCAA 58.066 39.130 0.00 0.00 0.00 3.53
508 517 5.332743 AGCAGACCTATCCAAAAATCCAAA 58.667 37.500 0.00 0.00 0.00 3.28
509 518 5.779771 AGCAGACCTATCCAAAAATCCAAAA 59.220 36.000 0.00 0.00 0.00 2.44
510 519 6.269769 AGCAGACCTATCCAAAAATCCAAAAA 59.730 34.615 0.00 0.00 0.00 1.94
545 554 3.880047 CATGTTTCTTGCCATGGTGAT 57.120 42.857 14.67 0.00 35.82 3.06
564 573 0.662619 TCAAAGTTGTGCCAGCGAAG 59.337 50.000 0.00 0.00 0.00 3.79
588 597 3.146828 GCAACCCCTTCCACCCAGT 62.147 63.158 0.00 0.00 0.00 4.00
589 598 1.541672 CAACCCCTTCCACCCAGTT 59.458 57.895 0.00 0.00 0.00 3.16
613 622 4.063125 AGAGGACCTAGGAATAGGGAAGA 58.937 47.826 17.98 0.00 41.51 2.87
617 626 3.306613 ACCTAGGAATAGGGAAGAACCG 58.693 50.000 17.98 0.00 41.51 4.44
618 627 3.306613 CCTAGGAATAGGGAAGAACCGT 58.693 50.000 1.05 0.00 40.11 4.83
626 636 0.399075 GGGAAGAACCGTGGAGGAAA 59.601 55.000 0.00 0.00 45.00 3.13
629 639 3.154710 GGAAGAACCGTGGAGGAAAATT 58.845 45.455 0.00 0.00 45.00 1.82
636 646 3.245264 ACCGTGGAGGAAAATTGAAGGAT 60.245 43.478 0.00 0.00 45.00 3.24
638 648 4.009675 CGTGGAGGAAAATTGAAGGATGA 58.990 43.478 0.00 0.00 0.00 2.92
665 675 4.177026 ACTCTTGAAGACATACGACATGC 58.823 43.478 0.00 0.00 0.00 4.06
674 684 0.455815 ATACGACATGCTGCTGACGA 59.544 50.000 21.80 11.50 37.65 4.20
683 693 0.319900 GCTGCTGACGAAGGACAAGA 60.320 55.000 0.00 0.00 0.00 3.02
750 761 6.320171 CGAATCGTTTAGAGTCTCAACCTAA 58.680 40.000 10.84 0.00 41.43 2.69
763 774 7.616313 AGTCTCAACCTAACAGAATTAAGGAG 58.384 38.462 0.00 0.00 33.16 3.69
766 777 8.826765 TCTCAACCTAACAGAATTAAGGAGAAT 58.173 33.333 0.00 0.00 33.16 2.40
787 799 6.645415 AGAATAAGTTCAAATCGACTCGTTGT 59.355 34.615 0.00 0.00 36.79 3.32
809 823 5.219633 GTCACGTTGGCAAAACAAGATAAT 58.780 37.500 0.00 0.00 0.00 1.28
810 824 5.689961 GTCACGTTGGCAAAACAAGATAATT 59.310 36.000 0.00 0.00 0.00 1.40
811 825 6.200097 GTCACGTTGGCAAAACAAGATAATTT 59.800 34.615 0.00 0.00 0.00 1.82
812 826 6.758886 TCACGTTGGCAAAACAAGATAATTTT 59.241 30.769 0.00 0.00 0.00 1.82
980 1168 0.730265 TCTTTCGGCAACACACACAC 59.270 50.000 0.00 0.00 0.00 3.82
982 1170 0.169230 TTTCGGCAACACACACACAC 59.831 50.000 0.00 0.00 0.00 3.82
983 1171 0.955919 TTCGGCAACACACACACACA 60.956 50.000 0.00 0.00 0.00 3.72
984 1172 0.955919 TCGGCAACACACACACACAA 60.956 50.000 0.00 0.00 0.00 3.33
985 1173 0.109551 CGGCAACACACACACACAAA 60.110 50.000 0.00 0.00 0.00 2.83
986 1174 1.627879 GGCAACACACACACACAAAG 58.372 50.000 0.00 0.00 0.00 2.77
987 1175 0.991344 GCAACACACACACACAAAGC 59.009 50.000 0.00 0.00 0.00 3.51
988 1176 1.627879 CAACACACACACACAAAGCC 58.372 50.000 0.00 0.00 0.00 4.35
989 1177 0.170116 AACACACACACACAAAGCCG 59.830 50.000 0.00 0.00 0.00 5.52
990 1178 1.586042 CACACACACACAAAGCCGC 60.586 57.895 0.00 0.00 0.00 6.53
1023 1211 1.679153 GAGGAGACCGAGGCTAAGAAG 59.321 57.143 0.00 0.00 0.00 2.85
1167 1355 0.837940 AGGTATTTCCCCTCCGCTTC 59.162 55.000 0.00 0.00 36.75 3.86
1176 1374 1.341156 CCCTCCGCTTCATCCCTCTT 61.341 60.000 0.00 0.00 0.00 2.85
1207 1405 2.517450 GGCGCAAGGTTCGATCTCG 61.517 63.158 10.83 0.00 38.28 4.04
1284 1483 2.030981 GGTTGACGACTCCCTATCGATC 60.031 54.545 0.00 0.00 42.25 3.69
1327 1526 0.030638 CCACCTTGTGTTTGCGGAAG 59.969 55.000 0.00 0.00 0.00 3.46
1379 1578 7.906199 AAACTGTAGAGTATGCTAGGATTCT 57.094 36.000 0.65 1.95 0.00 2.40
1386 1585 4.033709 AGTATGCTAGGATTCTGGTGTGT 58.966 43.478 0.65 0.00 0.00 3.72
1387 1586 2.768253 TGCTAGGATTCTGGTGTGTG 57.232 50.000 0.00 0.00 0.00 3.82
1395 1594 5.388654 AGGATTCTGGTGTGTGAGAAAAAT 58.611 37.500 0.00 0.00 32.07 1.82
1396 1595 5.242393 AGGATTCTGGTGTGTGAGAAAAATG 59.758 40.000 0.00 0.00 32.07 2.32
1398 1597 3.286353 TCTGGTGTGTGAGAAAAATGCA 58.714 40.909 0.00 0.00 0.00 3.96
1420 1624 7.457561 TGCAGGCCATAATGTATTACTTGATA 58.542 34.615 5.01 0.00 0.00 2.15
1434 1644 2.038557 ACTTGATAACTCTGCAACCCGT 59.961 45.455 0.00 0.00 0.00 5.28
1437 1647 1.732259 GATAACTCTGCAACCCGTGTG 59.268 52.381 0.00 0.00 0.00 3.82
1458 1668 2.214244 GTGACGAATGACACGATGATCG 59.786 50.000 14.01 14.01 46.93 3.69
1538 1748 5.870978 TCGGTGCTTATTTTACTTCTGTACC 59.129 40.000 0.00 0.00 0.00 3.34
1540 1750 6.315393 CGGTGCTTATTTTACTTCTGTACCAT 59.685 38.462 0.00 0.00 0.00 3.55
1551 1845 6.365970 ACTTCTGTACCATCTCTCATTTGT 57.634 37.500 0.00 0.00 0.00 2.83
1591 1892 7.042590 TGCAAACACTTGAGAAATGCTTAAATG 60.043 33.333 0.00 0.00 34.14 2.32
1596 1897 4.454728 TGAGAAATGCTTAAATGCCACC 57.545 40.909 0.00 0.00 0.00 4.61
1615 1916 1.727467 GCATCCATTGTGGCGTACC 59.273 57.895 0.00 0.00 37.47 3.34
1637 1938 5.711976 ACCTGCTTTATGCTACATTGAAAGT 59.288 36.000 0.00 0.00 43.37 2.66
1694 1995 5.069501 TGATAGGATCAAGATCGAGCATG 57.930 43.478 2.38 0.18 38.69 4.06
1710 2011 3.921677 AGCATGCCAAATGAGTTTCTTG 58.078 40.909 15.66 0.00 0.00 3.02
1729 2030 0.746659 GGGCTGTTGCAGAACTGTTT 59.253 50.000 0.00 0.00 41.91 2.83
1730 2031 1.269257 GGGCTGTTGCAGAACTGTTTC 60.269 52.381 0.00 0.00 41.91 2.78
1741 2042 0.179018 AACTGTTTCGGGAGCTTGCT 60.179 50.000 0.00 0.00 0.00 3.91
1750 2051 1.204941 CGGGAGCTTGCTGTAGTTACT 59.795 52.381 0.00 0.00 0.00 2.24
1781 2082 5.123979 GCTACTGCTAATAAAAACAGCCTGT 59.876 40.000 0.00 0.00 34.31 4.00
1788 2090 7.040062 TGCTAATAAAAACAGCCTGTTGTATGT 60.040 33.333 11.51 0.00 40.14 2.29
1796 2098 3.752747 CAGCCTGTTGTATGTGATGTTCA 59.247 43.478 0.00 0.00 0.00 3.18
1805 2107 9.623350 TGTTGTATGTGATGTTCAATTGTATTG 57.377 29.630 5.13 0.00 0.00 1.90
1812 2114 9.247126 TGTGATGTTCAATTGTATTGAAACTTG 57.753 29.630 14.44 0.00 39.76 3.16
1819 2121 4.846779 TTGTATTGAAACTTGGGACTGC 57.153 40.909 0.00 0.00 0.00 4.40
1955 2259 7.066645 TCTGTCTTTTGATCTAATGGCTTGATG 59.933 37.037 8.40 0.00 0.00 3.07
2051 2355 9.658799 AATATGTATAGTGGTTACAGATGCATC 57.341 33.333 19.37 19.37 33.17 3.91
2055 2359 2.171448 AGTGGTTACAGATGCATCCTCC 59.829 50.000 23.06 16.93 0.00 4.30
2253 2563 3.194968 CAGGAAATGAGGAAGCTTGCAAT 59.805 43.478 20.82 10.31 0.00 3.56
2281 2591 8.043710 ACATTTTGTGTGACCTTAAATTGGAAA 58.956 29.630 0.00 0.00 40.28 3.13
2324 3329 4.261801 AGCTGTGTTGTTTGTTAGTCACT 58.738 39.130 0.00 0.00 0.00 3.41
2389 3398 4.206244 AGATTAGGGTCAGCTATCCTGT 57.794 45.455 10.79 1.79 42.38 4.00
2397 3406 3.952323 GGTCAGCTATCCTGTGTGTACTA 59.048 47.826 0.00 0.00 42.38 1.82
2417 3426 9.788889 TGTACTACATATATATACCTCATCCCG 57.211 37.037 0.00 0.00 0.00 5.14
2440 3449 3.244105 GTGGCGTACACTGCACAG 58.756 61.111 5.33 0.00 46.72 3.66
2487 3496 6.261826 CCTAATCTCAGCCAACAGAATAAAGG 59.738 42.308 0.00 0.00 0.00 3.11
2511 3520 5.585047 GGGTAGGAATAGTGTTTGTCATGAC 59.415 44.000 19.27 19.27 0.00 3.06
2541 3550 4.385310 GGTGGAGTAAGATGGCAATACCTT 60.385 45.833 0.00 0.00 40.22 3.50
2545 3554 6.069905 TGGAGTAAGATGGCAATACCTTAACA 60.070 38.462 0.00 0.00 40.22 2.41
2704 3713 5.011090 TCATTCTACCTCGGTTCTCAATG 57.989 43.478 0.00 0.00 0.00 2.82
2715 3724 0.329261 TTCTCAATGGGGCCTCACAG 59.671 55.000 7.99 4.23 0.00 3.66
2808 3817 2.907042 AGTACCTCTTCCCAACAGAAGG 59.093 50.000 1.74 0.00 42.94 3.46
2901 3911 1.559368 TGATCTTTGTTGGGCATGGG 58.441 50.000 0.00 0.00 0.00 4.00
2903 3913 2.042297 TGATCTTTGTTGGGCATGGGTA 59.958 45.455 0.00 0.00 0.00 3.69
2907 3917 1.554836 TTGTTGGGCATGGGTATGTG 58.445 50.000 0.00 0.00 36.65 3.21
2912 3922 1.488812 TGGGCATGGGTATGTGAGTAC 59.511 52.381 0.00 0.00 36.65 2.73
2935 3945 4.282873 GGAGAAAAAGCGAGACACTTTTG 58.717 43.478 2.53 0.00 44.44 2.44
2943 3953 6.707599 AAGCGAGACACTTTTGTACTATTC 57.292 37.500 0.00 0.00 35.47 1.75
2944 3954 5.779922 AGCGAGACACTTTTGTACTATTCA 58.220 37.500 0.00 0.00 35.47 2.57
2947 3957 6.145696 GCGAGACACTTTTGTACTATTCAGTT 59.854 38.462 0.00 0.00 35.47 3.16
2969 3986 6.264518 AGTTTTTCTGTGTTACAGGGTTATGG 59.735 38.462 8.91 0.00 45.94 2.74
2982 3999 5.711976 ACAGGGTTATGGTTGATCAAGAAAG 59.288 40.000 8.80 0.00 0.00 2.62
2986 4003 7.060421 GGGTTATGGTTGATCAAGAAAGGATA 58.940 38.462 8.80 0.00 0.00 2.59
3061 4595 1.692411 ACCAAGGGAAGCAAGAACAC 58.308 50.000 0.00 0.00 0.00 3.32
3066 4600 1.494721 AGGGAAGCAAGAACACAGGAA 59.505 47.619 0.00 0.00 0.00 3.36
3086 4620 4.687483 GGAAACTTCATGAAACATTGCAGG 59.313 41.667 9.88 0.00 0.00 4.85
3092 4626 6.993902 ACTTCATGAAACATTGCAGGATTTTT 59.006 30.769 9.88 0.00 0.00 1.94
3114 4648 3.753294 ATACGCTAATCTTCCCACCTG 57.247 47.619 0.00 0.00 0.00 4.00
3126 4660 1.538876 CCACCTGTTCTCTCCCCCA 60.539 63.158 0.00 0.00 0.00 4.96
3134 4668 0.479589 TTCTCTCCCCCAACCCCAAT 60.480 55.000 0.00 0.00 0.00 3.16
3153 4687 7.719193 ACCCCAATTAAAGAAAAGGAAAACATG 59.281 33.333 0.00 0.00 0.00 3.21
3186 4720 9.396022 CTTTAGCCATGAAATAGTTTTCTAGGA 57.604 33.333 0.00 0.00 41.54 2.94
3189 4723 7.349598 AGCCATGAAATAGTTTTCTAGGACAT 58.650 34.615 0.00 0.00 41.54 3.06
3212 4746 5.824429 TGCATTGACTCTTTTCTTGTGAAG 58.176 37.500 0.00 0.00 33.28 3.02
3228 4762 1.611491 TGAAGTTCGGGCCAAAATGAC 59.389 47.619 4.39 0.00 0.00 3.06
3229 4763 1.611491 GAAGTTCGGGCCAAAATGACA 59.389 47.619 4.39 0.00 0.00 3.58
3230 4764 1.923356 AGTTCGGGCCAAAATGACAT 58.077 45.000 4.39 0.00 0.00 3.06
3231 4765 2.247358 AGTTCGGGCCAAAATGACATT 58.753 42.857 4.39 0.00 0.00 2.71
3232 4766 2.029110 AGTTCGGGCCAAAATGACATTG 60.029 45.455 4.39 0.00 0.00 2.82
3281 4815 6.316140 GCAAATATGTCATCAGGTCAACTACA 59.684 38.462 0.00 0.00 0.00 2.74
3353 4887 3.686916 TTCACCATATTCCACACGTCA 57.313 42.857 0.00 0.00 0.00 4.35
3374 4908 6.058183 GTCATTGTTAGATCCTTATGCTGGT 58.942 40.000 0.00 0.00 0.00 4.00
3440 4974 6.073003 GGAGAGTTAACACCTCTGATGTTTTG 60.073 42.308 20.27 0.00 39.36 2.44
3487 5021 5.509498 TCCAGGAAAATATGAAGGTGAAGG 58.491 41.667 0.00 0.00 0.00 3.46
3526 5060 2.967459 TGCAGCATGTTTTGTCGTAG 57.033 45.000 0.00 0.00 39.31 3.51
3537 5071 4.093703 TGTTTTGTCGTAGTTGTGAACCTG 59.906 41.667 0.00 0.00 0.00 4.00
3559 5093 2.244769 ACAATTTCCATGGGTCCTAGGG 59.755 50.000 13.02 0.00 0.00 3.53
3684 5218 8.035984 GGTGGGATACTTGCTCTAAGATTATAC 58.964 40.741 0.00 0.00 39.76 1.47
3720 5254 5.811399 TTTGTGTACACTTGGAAGTTCTG 57.189 39.130 25.60 0.00 37.08 3.02
3763 5300 4.448210 TCTTCCGAATGTATTTGGCCTAC 58.552 43.478 3.32 0.00 40.49 3.18
3764 5301 2.828877 TCCGAATGTATTTGGCCTACG 58.171 47.619 3.32 0.00 40.49 3.51
3770 5307 5.391097 CGAATGTATTTGGCCTACGTTTTCA 60.391 40.000 3.32 0.00 30.43 2.69
3788 5325 3.325293 TCATGGTGCAGTTTCTCTCTC 57.675 47.619 0.00 0.00 0.00 3.20
3795 5332 3.088532 TGCAGTTTCTCTCTCCTCTCTC 58.911 50.000 0.00 0.00 0.00 3.20
3796 5333 2.427095 GCAGTTTCTCTCTCCTCTCTCC 59.573 54.545 0.00 0.00 0.00 3.71
3797 5334 3.877735 GCAGTTTCTCTCTCCTCTCTCCT 60.878 52.174 0.00 0.00 0.00 3.69
3798 5335 3.947834 CAGTTTCTCTCTCCTCTCTCCTC 59.052 52.174 0.00 0.00 0.00 3.71
3799 5336 3.852578 AGTTTCTCTCTCCTCTCTCCTCT 59.147 47.826 0.00 0.00 0.00 3.69
3800 5337 4.080299 AGTTTCTCTCTCCTCTCTCCTCTC 60.080 50.000 0.00 0.00 0.00 3.20
3801 5338 3.421394 TCTCTCTCCTCTCTCCTCTCT 57.579 52.381 0.00 0.00 0.00 3.10
3811 5348 4.042809 CCTCTCTCCTCTCTCCAGCTAATA 59.957 50.000 0.00 0.00 0.00 0.98
3859 5528 7.063544 AGCTTACAATGCTACTTAAAGTCTTCG 59.936 37.037 0.00 0.00 39.21 3.79
3862 5531 5.638234 ACAATGCTACTTAAAGTCTTCGACC 59.362 40.000 0.00 0.00 32.18 4.79
3874 5543 6.481954 AAGTCTTCGACCAATTGTTGATAC 57.518 37.500 4.43 4.60 37.22 2.24
3914 5584 8.539770 TGAGAAACAGTTCATTCAGATAGTTC 57.460 34.615 0.00 0.00 36.09 3.01
3945 5615 9.142515 CATTATCTATCTCTGTGATTCTTCAGC 57.857 37.037 0.00 0.00 36.65 4.26
3996 5666 5.918608 TCTTTGCAGGTCTGAAGGTATATC 58.081 41.667 1.65 0.00 0.00 1.63
4005 5675 7.655328 CAGGTCTGAAGGTATATCAATCTGTTC 59.345 40.741 0.00 0.00 0.00 3.18
4006 5676 7.566879 AGGTCTGAAGGTATATCAATCTGTTCT 59.433 37.037 0.00 0.00 0.00 3.01
4078 5748 1.032014 TCAAACTTTCAGGGTGCTGC 58.968 50.000 0.00 0.00 0.00 5.25
4154 5824 7.826690 TCCCAAATGTAAAAGCTAATCTGTTC 58.173 34.615 0.00 0.00 0.00 3.18
4167 5837 6.766944 AGCTAATCTGTTCAAGGAATCATCTG 59.233 38.462 0.00 0.00 0.00 2.90
4284 5963 3.569701 TCTTCACACAGAAAATGAAGGGC 59.430 43.478 12.03 0.00 46.15 5.19
4295 5974 3.778954 AATGAAGGGCATAGAGGCTAC 57.221 47.619 0.00 0.00 43.56 3.58
4296 5975 2.174685 TGAAGGGCATAGAGGCTACA 57.825 50.000 0.00 0.00 43.56 2.74
4322 6001 0.900421 TCCTGATGGCTGAGACTGTG 59.100 55.000 0.00 0.00 0.00 3.66
4359 6038 3.267291 ACTTCCTAGTCTCTACAGGCTCA 59.733 47.826 0.00 0.00 35.61 4.26
4559 6238 3.439129 AGGCAATTTCTACGCTTGGTTAC 59.561 43.478 0.00 0.00 0.00 2.50
4590 6269 5.652014 TGGTAAGAATTTGTTAGCCATCTGG 59.348 40.000 11.56 0.00 38.53 3.86
4607 6286 6.942576 GCCATCTGGTATTTATTCATGTACCT 59.057 38.462 8.82 0.00 37.92 3.08
4698 6382 5.917541 ATACTTTTTGTACAGTGGTCACG 57.082 39.130 0.00 0.00 33.45 4.35
4808 6494 6.389830 TGAGTATCAAGCACATGTGTTTTT 57.610 33.333 23.42 16.40 45.97 1.94
4879 6573 4.257536 TCGTTAAATGCATCACATGACG 57.742 40.909 0.00 6.22 39.60 4.35
4899 6593 2.679639 CGAAACCATAGGCCAGCTGTTA 60.680 50.000 13.81 2.63 0.00 2.41
4913 6608 3.688185 CAGCTGTTAACACTCAGATGCAT 59.312 43.478 5.25 0.00 40.27 3.96
4916 6611 4.436584 GCTGTTAACACTCAGATGCATGAC 60.437 45.833 2.46 0.00 34.02 3.06
4917 6612 4.898320 TGTTAACACTCAGATGCATGACT 58.102 39.130 2.46 0.00 0.00 3.41
4918 6613 5.308014 TGTTAACACTCAGATGCATGACTT 58.692 37.500 2.46 0.00 0.00 3.01
4988 6684 3.694072 GGTGTCCATGCATTTGCTTACTA 59.306 43.478 0.00 0.00 42.66 1.82
4993 6689 4.640201 TCCATGCATTTGCTTACTAGTTCC 59.360 41.667 0.00 0.00 42.66 3.62
5094 6790 8.567948 GTTTGGAAATTCTCATTCAAGTAGACA 58.432 33.333 0.00 0.00 0.00 3.41
5114 6810 1.035932 AGCATGGCCTCTGTGATTGC 61.036 55.000 3.32 0.50 0.00 3.56
5127 6823 6.462067 CCTCTGTGATTGCTGTATCAGATACA 60.462 42.308 20.13 20.13 43.06 2.29
5207 6903 6.500041 TGGTGTTTTAATGCACTGTTAGTTC 58.500 36.000 0.00 0.00 36.03 3.01
5226 6922 6.713762 AGTTCCAAGTTGATTGTTCATGAA 57.286 33.333 3.38 3.38 37.17 2.57
5272 6968 9.127277 GTACTTGAGTCCTATCTCTGAATTACT 57.873 37.037 0.00 0.00 35.68 2.24
5314 7010 4.080638 ACCCTTTCCTCTGAGATGTGAATC 60.081 45.833 6.17 0.00 0.00 2.52
5325 7021 4.202430 TGAGATGTGAATCCTCCATGATGG 60.202 45.833 4.74 4.74 39.43 3.51
5378 7074 2.068519 GCAGCACTTTTTATTGCCCAC 58.931 47.619 0.00 0.00 39.75 4.61
5417 7113 2.354259 GAATTCCAGTGGCAGACAGAG 58.646 52.381 3.51 0.00 0.00 3.35
5428 7124 2.001159 GCAGACAGAGCTGATTGAGTG 58.999 52.381 4.21 0.00 38.14 3.51
5509 7205 4.353383 ACTTTACCTCCTTTGTCCAGAC 57.647 45.455 0.00 0.00 0.00 3.51
5527 7223 1.599071 GACGCCATGATACACACCATG 59.401 52.381 0.00 0.00 39.72 3.66
5528 7224 0.308684 CGCCATGATACACACCATGC 59.691 55.000 0.00 0.00 38.95 4.06
5529 7225 1.683943 GCCATGATACACACCATGCT 58.316 50.000 0.00 0.00 38.95 3.79
5530 7226 1.605710 GCCATGATACACACCATGCTC 59.394 52.381 0.00 0.00 38.95 4.26
5546 7242 1.600636 CTCGCTTTCCTGGCAACCA 60.601 57.895 0.00 0.00 0.00 3.67
5596 7292 4.860022 AGATAATTTTGGGAGAGGTGTGG 58.140 43.478 0.00 0.00 0.00 4.17
5606 7302 0.191064 AGAGGTGTGGGTGAGGAAGA 59.809 55.000 0.00 0.00 0.00 2.87
5608 7304 0.838122 AGGTGTGGGTGAGGAAGAGG 60.838 60.000 0.00 0.00 0.00 3.69
5609 7305 1.679898 GTGTGGGTGAGGAAGAGGG 59.320 63.158 0.00 0.00 0.00 4.30
5610 7306 1.538876 TGTGGGTGAGGAAGAGGGG 60.539 63.158 0.00 0.00 0.00 4.79
5611 7307 2.124996 TGGGTGAGGAAGAGGGGG 59.875 66.667 0.00 0.00 0.00 5.40
5686 7382 1.947456 GCGACCTTTGTCCTCTTGTTT 59.053 47.619 0.00 0.00 38.32 2.83
5719 7415 1.493772 TTCTAATTATCGGCGCCGTG 58.506 50.000 44.16 25.57 40.74 4.94
5911 7607 1.731720 CAGCTTCTTCCAGTACCAGC 58.268 55.000 0.00 0.00 0.00 4.85
5978 7674 2.433318 GTGGCTGCCGTCTCTGAC 60.433 66.667 14.98 0.27 0.00 3.51
6085 7781 4.465446 CCGAGCCCTCCTCCTCCA 62.465 72.222 0.00 0.00 37.27 3.86
6086 7782 2.364317 CGAGCCCTCCTCCTCCAA 60.364 66.667 0.00 0.00 37.27 3.53
6087 7783 2.430610 CGAGCCCTCCTCCTCCAAG 61.431 68.421 0.00 0.00 37.27 3.61
6088 7784 1.002274 GAGCCCTCCTCCTCCAAGA 59.998 63.158 0.00 0.00 34.35 3.02
6089 7785 0.399806 GAGCCCTCCTCCTCCAAGAT 60.400 60.000 0.00 0.00 34.35 2.40
6090 7786 0.399806 AGCCCTCCTCCTCCAAGATC 60.400 60.000 0.00 0.00 0.00 2.75
6091 7787 1.414866 GCCCTCCTCCTCCAAGATCC 61.415 65.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.130633 GCCACATGCAACTACGATATCA 58.869 45.455 3.12 0.00 40.77 2.15
28 29 3.393800 GAGCCACATGCAACTACGATAT 58.606 45.455 0.00 0.00 44.83 1.63
31 32 0.735978 CGAGCCACATGCAACTACGA 60.736 55.000 0.00 0.00 44.83 3.43
32 33 1.709760 CGAGCCACATGCAACTACG 59.290 57.895 0.00 0.00 44.83 3.51
41 42 1.520120 CAGATCACGCGAGCCACAT 60.520 57.895 15.93 0.00 0.00 3.21
46 47 2.410053 GGATAAATCAGATCACGCGAGC 59.590 50.000 15.93 0.00 0.00 5.03
48 49 3.317993 TCAGGATAAATCAGATCACGCGA 59.682 43.478 15.93 0.00 0.00 5.87
52 53 6.098679 CCGATCTCAGGATAAATCAGATCAC 58.901 44.000 14.35 0.00 39.60 3.06
58 59 2.628178 ACGCCGATCTCAGGATAAATCA 59.372 45.455 0.00 0.00 31.46 2.57
63 64 1.399714 ACAACGCCGATCTCAGGATA 58.600 50.000 0.00 0.00 31.46 2.59
64 65 1.067212 GTACAACGCCGATCTCAGGAT 59.933 52.381 0.00 0.00 34.45 3.24
65 66 0.454600 GTACAACGCCGATCTCAGGA 59.545 55.000 0.00 0.00 0.00 3.86
67 68 0.098200 TCGTACAACGCCGATCTCAG 59.902 55.000 0.00 0.00 42.21 3.35
68 69 0.098200 CTCGTACAACGCCGATCTCA 59.902 55.000 0.00 0.00 42.21 3.27
70 71 1.432251 CCTCGTACAACGCCGATCT 59.568 57.895 0.00 0.00 42.21 2.75
76 77 1.517913 GGTAGCCCTCGTACAACGC 60.518 63.158 0.00 0.00 42.21 4.84
84 85 1.949525 CAAAATGATGGGTAGCCCTCG 59.050 52.381 8.85 0.00 45.70 4.63
85 86 3.018423 ACAAAATGATGGGTAGCCCTC 57.982 47.619 8.85 9.00 45.70 4.30
109 110 5.715434 AAAAACATAGTACACGGCCAAAT 57.285 34.783 2.24 0.00 0.00 2.32
149 151 0.966179 AAACAGATTTTCACCCCCGC 59.034 50.000 0.00 0.00 0.00 6.13
150 152 1.199097 CGAAACAGATTTTCACCCCCG 59.801 52.381 0.00 0.00 0.00 5.73
151 153 2.488153 CTCGAAACAGATTTTCACCCCC 59.512 50.000 0.00 0.00 0.00 5.40
161 169 6.039616 GCACTTCTTATCTCTCGAAACAGAT 58.960 40.000 6.47 6.47 33.75 2.90
192 200 3.695830 ATGGTGTCGTGGTTATTCAGT 57.304 42.857 0.00 0.00 0.00 3.41
225 233 5.755409 TCAGGTGCTTAGGAGATTGTAAA 57.245 39.130 0.00 0.00 0.00 2.01
233 241 3.054802 AGTCCAAATCAGGTGCTTAGGAG 60.055 47.826 0.00 0.00 0.00 3.69
263 271 8.548025 TGTTATGAAGAAGAGTGGATGGAAATA 58.452 33.333 0.00 0.00 0.00 1.40
268 276 7.201767 GGAAATGTTATGAAGAAGAGTGGATGG 60.202 40.741 0.00 0.00 0.00 3.51
275 283 7.754027 CAGCAAAGGAAATGTTATGAAGAAGAG 59.246 37.037 0.00 0.00 0.00 2.85
282 290 6.855763 AATCCAGCAAAGGAAATGTTATGA 57.144 33.333 0.00 0.00 41.92 2.15
285 293 6.662865 TGAAATCCAGCAAAGGAAATGTTA 57.337 33.333 0.00 0.00 41.92 2.41
288 296 5.726397 TCATGAAATCCAGCAAAGGAAATG 58.274 37.500 0.00 1.05 41.92 2.32
294 302 4.421948 GCTCTTCATGAAATCCAGCAAAG 58.578 43.478 9.88 0.00 0.00 2.77
295 303 3.119743 CGCTCTTCATGAAATCCAGCAAA 60.120 43.478 20.09 0.00 0.00 3.68
297 305 2.011947 CGCTCTTCATGAAATCCAGCA 58.988 47.619 20.09 0.00 0.00 4.41
301 309 2.357009 ACATGCGCTCTTCATGAAATCC 59.643 45.455 9.73 0.00 42.84 3.01
306 314 0.249955 TGGACATGCGCTCTTCATGA 59.750 50.000 9.73 0.00 42.84 3.07
310 318 0.874390 TTTGTGGACATGCGCTCTTC 59.126 50.000 9.73 1.09 0.00 2.87
323 331 1.609783 CCTAGCCCCCTCTTTGTGG 59.390 63.158 0.00 0.00 0.00 4.17
325 333 2.309504 GCCCTAGCCCCCTCTTTGT 61.310 63.158 0.00 0.00 0.00 2.83
328 336 0.045778 TTTAGCCCTAGCCCCCTCTT 59.954 55.000 0.00 0.00 41.25 2.85
330 338 1.706995 GGTTTAGCCCTAGCCCCCTC 61.707 65.000 0.00 0.00 41.25 4.30
376 385 1.610522 CACTGGAGAAGGCAAAAGTGG 59.389 52.381 0.00 0.00 33.12 4.00
380 389 2.108075 TGATCCACTGGAGAAGGCAAAA 59.892 45.455 3.62 0.00 34.05 2.44
385 394 2.744760 TCTCTGATCCACTGGAGAAGG 58.255 52.381 3.62 0.00 34.05 3.46
401 410 4.646572 GTGTGTGGGAAGAAGAAATCTCT 58.353 43.478 0.00 0.00 37.42 3.10
412 421 2.320587 GCAGAGCGTGTGTGGGAAG 61.321 63.158 0.00 0.00 0.00 3.46
414 423 1.468506 TAAGCAGAGCGTGTGTGGGA 61.469 55.000 0.00 0.00 0.00 4.37
415 424 1.005037 TAAGCAGAGCGTGTGTGGG 60.005 57.895 0.00 0.00 0.00 4.61
423 432 4.999751 AAGAAGAAAACTAAGCAGAGCG 57.000 40.909 0.00 0.00 0.00 5.03
424 433 5.848786 CGTAAGAAGAAAACTAAGCAGAGC 58.151 41.667 0.00 0.00 43.02 4.09
443 452 5.937540 TCTTCAGGAGAAATTGCATTCGTAA 59.062 36.000 0.00 0.00 34.46 3.18
445 454 4.326826 TCTTCAGGAGAAATTGCATTCGT 58.673 39.130 0.00 0.00 34.46 3.85
447 456 4.439837 GGCTCTTCAGGAGAAATTGCATTC 60.440 45.833 0.00 0.00 44.45 2.67
451 460 2.682352 GAGGCTCTTCAGGAGAAATTGC 59.318 50.000 7.40 0.00 44.45 3.56
454 463 2.461695 TCGAGGCTCTTCAGGAGAAAT 58.538 47.619 13.50 0.00 44.45 2.17
455 464 1.924731 TCGAGGCTCTTCAGGAGAAA 58.075 50.000 13.50 0.00 44.45 2.52
456 465 2.151502 ATCGAGGCTCTTCAGGAGAA 57.848 50.000 13.50 0.00 44.45 2.87
457 466 2.439880 TCTATCGAGGCTCTTCAGGAGA 59.560 50.000 13.50 0.45 44.45 3.71
462 471 2.036475 GGCATTCTATCGAGGCTCTTCA 59.964 50.000 13.50 0.00 0.00 3.02
475 484 4.090090 GGATAGGTCTGCTAGGCATTCTA 58.910 47.826 0.00 0.00 38.13 2.10
476 485 2.903135 GGATAGGTCTGCTAGGCATTCT 59.097 50.000 0.00 0.00 38.13 2.40
481 490 3.560636 TTTTGGATAGGTCTGCTAGGC 57.439 47.619 0.00 0.00 0.00 3.93
507 516 0.741915 TGGGCGAGAAAAGCGTTTTT 59.258 45.000 9.90 9.90 39.16 1.94
508 517 0.958822 ATGGGCGAGAAAAGCGTTTT 59.041 45.000 0.00 0.00 35.12 2.43
509 518 0.240945 CATGGGCGAGAAAAGCGTTT 59.759 50.000 0.00 0.00 35.00 3.60
510 519 0.889186 ACATGGGCGAGAAAAGCGTT 60.889 50.000 0.00 0.00 35.00 4.84
511 520 0.889186 AACATGGGCGAGAAAAGCGT 60.889 50.000 0.00 0.00 35.00 5.07
512 521 0.240945 AAACATGGGCGAGAAAAGCG 59.759 50.000 0.00 0.00 35.00 4.68
545 554 0.662619 CTTCGCTGGCACAACTTTGA 59.337 50.000 0.00 0.00 38.70 2.69
564 573 0.960861 GTGGAAGGGGTTGCTACAGC 60.961 60.000 0.00 0.00 42.50 4.40
567 576 1.001269 GGGTGGAAGGGGTTGCTAC 60.001 63.158 0.00 0.00 0.00 3.58
588 597 3.797845 TCCCTATTCCTAGGTCCTCTCAA 59.202 47.826 9.08 0.00 42.78 3.02
589 598 3.414057 TCCCTATTCCTAGGTCCTCTCA 58.586 50.000 9.08 0.00 42.78 3.27
613 622 2.890945 CCTTCAATTTTCCTCCACGGTT 59.109 45.455 0.00 0.00 0.00 4.44
617 626 5.711976 TCTTCATCCTTCAATTTTCCTCCAC 59.288 40.000 0.00 0.00 0.00 4.02
618 627 5.891198 TCTTCATCCTTCAATTTTCCTCCA 58.109 37.500 0.00 0.00 0.00 3.86
626 636 8.469309 TTCAAGAGTTTCTTCATCCTTCAATT 57.531 30.769 0.00 0.00 33.78 2.32
629 639 6.708054 GTCTTCAAGAGTTTCTTCATCCTTCA 59.292 38.462 0.00 0.00 33.78 3.02
636 646 6.641314 GTCGTATGTCTTCAAGAGTTTCTTCA 59.359 38.462 0.00 0.00 33.78 3.02
638 648 6.513180 TGTCGTATGTCTTCAAGAGTTTCTT 58.487 36.000 0.00 0.00 37.14 2.52
665 675 2.154854 TTCTTGTCCTTCGTCAGCAG 57.845 50.000 0.00 0.00 0.00 4.24
674 684 9.853177 CATAATATCTAGGGTTTTCTTGTCCTT 57.147 33.333 0.00 0.00 0.00 3.36
683 693 5.752030 GCCCTGGCATAATATCTAGGGTTTT 60.752 44.000 16.36 0.00 45.28 2.43
725 736 3.858238 GGTTGAGACTCTAAACGATTCGG 59.142 47.826 11.29 0.00 0.00 4.30
763 774 6.818416 ACAACGAGTCGATTTGAACTTATTC 58.182 36.000 21.50 0.00 35.18 1.75
766 777 5.817616 GACAACGAGTCGATTTGAACTTA 57.182 39.130 21.50 0.00 37.53 2.24
787 799 4.902443 TTATCTTGTTTTGCCAACGTGA 57.098 36.364 0.00 0.00 0.00 4.35
812 826 4.100344 GGCTTTACCAACCAGAAGGAAAAA 59.900 41.667 0.00 0.00 38.86 1.94
814 828 3.227614 GGCTTTACCAACCAGAAGGAAA 58.772 45.455 0.00 0.00 38.86 3.13
815 829 2.871453 GGCTTTACCAACCAGAAGGAA 58.129 47.619 0.00 0.00 38.86 3.36
840 854 9.733219 CCAAATTTCTTGCAAAATTTAACACAT 57.267 25.926 17.30 0.00 43.50 3.21
980 1168 4.326766 CGTGTGGGCGGCTTTGTG 62.327 66.667 9.56 0.00 0.00 3.33
990 1178 3.687321 CTCCTCCATGGCGTGTGGG 62.687 68.421 6.96 7.34 37.34 4.61
1167 1355 1.472376 GGAAGAGCACGAAGAGGGATG 60.472 57.143 0.00 0.00 0.00 3.51
1207 1405 4.348857 CTGCAAGGCAAACAAGGC 57.651 55.556 0.00 0.00 38.41 4.35
1284 1483 4.728882 GCATTTCTGAATCGCACCTTGTAG 60.729 45.833 6.67 0.00 0.00 2.74
1327 1526 0.179150 CTACAGAGCGACAGAGGCAC 60.179 60.000 0.00 0.00 0.00 5.01
1379 1578 2.361757 CCTGCATTTTTCTCACACACCA 59.638 45.455 0.00 0.00 0.00 4.17
1386 1585 4.467082 ACATTATGGCCTGCATTTTTCTCA 59.533 37.500 3.32 0.00 0.00 3.27
1387 1586 5.014808 ACATTATGGCCTGCATTTTTCTC 57.985 39.130 3.32 0.00 0.00 2.87
1395 1594 5.689835 TCAAGTAATACATTATGGCCTGCA 58.310 37.500 3.32 0.00 0.00 4.41
1396 1595 6.824305 ATCAAGTAATACATTATGGCCTGC 57.176 37.500 3.32 0.00 0.00 4.85
1398 1597 9.726438 GAGTTATCAAGTAATACATTATGGCCT 57.274 33.333 3.32 0.00 0.00 5.19
1420 1624 1.095228 CACACACGGGTTGCAGAGTT 61.095 55.000 0.00 0.00 0.00 3.01
1434 1644 2.058057 CATCGTGTCATTCGTCACACA 58.942 47.619 3.33 0.00 42.67 3.72
1437 1647 2.214244 CGATCATCGTGTCATTCGTCAC 59.786 50.000 0.00 0.00 34.72 3.67
1458 1668 3.513680 TTGCATGCTCAATGATCAACC 57.486 42.857 20.33 0.00 38.72 3.77
1538 1748 5.587443 TCAACTGGCATACAAATGAGAGATG 59.413 40.000 0.00 0.00 34.84 2.90
1540 1750 5.164620 TCAACTGGCATACAAATGAGAGA 57.835 39.130 0.00 0.00 34.84 3.10
1551 1845 2.954989 TGTTTGCAGTTCAACTGGCATA 59.045 40.909 19.35 9.71 46.01 3.14
1591 1892 2.491152 CACAATGGATGCGGTGGC 59.509 61.111 0.00 0.00 40.52 5.01
1637 1938 2.094234 TCGCACTTGCAATAGCTCTACA 60.094 45.455 17.67 0.00 42.74 2.74
1649 1950 0.937304 TCACTTCAGTTCGCACTTGC 59.063 50.000 0.00 0.00 37.78 4.01
1694 1995 1.620323 AGCCCAAGAAACTCATTTGGC 59.380 47.619 0.00 0.00 39.98 4.52
1710 2011 0.746659 AAACAGTTCTGCAACAGCCC 59.253 50.000 0.00 0.00 34.60 5.19
1729 2030 1.203994 GTAACTACAGCAAGCTCCCGA 59.796 52.381 0.00 0.00 0.00 5.14
1730 2031 1.204941 AGTAACTACAGCAAGCTCCCG 59.795 52.381 0.00 0.00 0.00 5.14
1741 2042 5.475909 AGCAGTAGCACAAGTAGTAACTACA 59.524 40.000 0.00 0.00 45.49 2.74
1750 2051 8.610248 TGTTTTTATTAGCAGTAGCACAAGTA 57.390 30.769 0.00 0.00 45.49 2.24
1788 2090 7.871973 CCCAAGTTTCAATACAATTGAACATCA 59.128 33.333 13.59 0.00 38.05 3.07
1796 2098 5.304101 TGCAGTCCCAAGTTTCAATACAATT 59.696 36.000 0.00 0.00 0.00 2.32
1805 2107 3.905784 CAGAATTGCAGTCCCAAGTTTC 58.094 45.455 0.00 0.00 0.00 2.78
1819 2121 6.264832 TGACTGTTGTTTACTTGCAGAATTG 58.735 36.000 0.00 0.00 0.00 2.32
1884 2187 6.001460 TGTACCTGACCATTTAAGAACCAAG 58.999 40.000 0.00 0.00 0.00 3.61
1929 2232 6.475504 TCAAGCCATTAGATCAAAAGACAGA 58.524 36.000 0.00 0.00 0.00 3.41
1930 2233 6.748333 TCAAGCCATTAGATCAAAAGACAG 57.252 37.500 0.00 0.00 0.00 3.51
1931 2234 6.885918 TCATCAAGCCATTAGATCAAAAGACA 59.114 34.615 0.00 0.00 0.00 3.41
1932 2235 7.325660 TCATCAAGCCATTAGATCAAAAGAC 57.674 36.000 0.00 0.00 0.00 3.01
1933 2236 7.230108 GGATCATCAAGCCATTAGATCAAAAGA 59.770 37.037 0.00 0.00 34.94 2.52
1955 2259 5.200483 TCACCTACAATTTCAATGGGGATC 58.800 41.667 0.00 0.00 0.00 3.36
2028 2332 6.270927 AGGATGCATCTGTAACCACTATACAT 59.729 38.462 25.28 0.00 33.12 2.29
2043 2347 1.129917 CAGGACTGGAGGATGCATCT 58.870 55.000 25.28 12.03 34.26 2.90
2048 2352 4.572389 CGAATTAAACAGGACTGGAGGATG 59.428 45.833 4.14 0.00 34.19 3.51
2051 2355 3.939066 ACGAATTAAACAGGACTGGAGG 58.061 45.455 4.14 0.00 34.19 4.30
2055 2359 7.548075 ACAACCTATACGAATTAAACAGGACTG 59.452 37.037 0.00 0.00 0.00 3.51
2139 2444 4.762251 AGTAGAAGTCCAGAACAAAATGCC 59.238 41.667 0.00 0.00 0.00 4.40
2141 2446 7.962964 TGTAGTAGAAGTCCAGAACAAAATG 57.037 36.000 0.00 0.00 0.00 2.32
2253 2563 8.696374 TCCAATTTAAGGTCACACAAAATGTTA 58.304 29.630 0.00 0.00 40.64 2.41
2324 3329 6.995686 TCAACTGAGGCTAATCTAAAACAACA 59.004 34.615 0.00 0.00 0.00 3.33
2397 3406 9.132923 CTGTTACGGGATGAGGTATATATATGT 57.867 37.037 5.44 0.00 0.00 2.29
2440 3449 2.260869 ACCTGGCATGCGTGAACAC 61.261 57.895 12.44 0.00 0.00 3.32
2487 3496 5.585047 GTCATGACAAACACTATTCCTACCC 59.415 44.000 21.07 0.00 0.00 3.69
2511 3520 3.491104 GCCATCTTACTCCACCTCTAACG 60.491 52.174 0.00 0.00 0.00 3.18
2573 3582 6.737720 ACTACTTCCATCTATGATTGCTCA 57.262 37.500 0.00 0.00 35.41 4.26
2683 3692 4.122776 CCATTGAGAACCGAGGTAGAATG 58.877 47.826 0.00 2.56 0.00 2.67
2715 3724 2.623915 CCACACAGCAGAGCAAGGC 61.624 63.158 0.00 0.00 0.00 4.35
2723 3732 0.816825 AACAGTCAGCCACACAGCAG 60.817 55.000 0.00 0.00 34.23 4.24
2808 3817 6.261118 CAGCAGCCTAATCATACAAAGAAAC 58.739 40.000 0.00 0.00 0.00 2.78
2873 3883 3.697542 CCCAACAAAGATCATGATGAGCA 59.302 43.478 14.30 0.00 34.77 4.26
2901 3911 4.031426 CGCTTTTTCTCCGTACTCACATAC 59.969 45.833 0.00 0.00 0.00 2.39
2903 3913 2.993899 CGCTTTTTCTCCGTACTCACAT 59.006 45.455 0.00 0.00 0.00 3.21
2907 3917 2.916089 GTCTCGCTTTTTCTCCGTACTC 59.084 50.000 0.00 0.00 0.00 2.59
2912 3922 1.784525 AGTGTCTCGCTTTTTCTCCG 58.215 50.000 0.00 0.00 0.00 4.63
2953 3963 5.250200 TGATCAACCATAACCCTGTAACAC 58.750 41.667 0.00 0.00 0.00 3.32
2959 3969 5.126061 CCTTTCTTGATCAACCATAACCCTG 59.874 44.000 3.38 0.00 0.00 4.45
2989 4006 8.039603 ACAAACAGACTCGCAATATTCATAAA 57.960 30.769 0.00 0.00 0.00 1.40
3002 4019 4.449068 AGTGAGCATTAACAAACAGACTCG 59.551 41.667 0.00 0.00 0.00 4.18
3061 4595 5.291178 TGCAATGTTTCATGAAGTTTCCTG 58.709 37.500 8.41 4.47 0.00 3.86
3066 4600 5.733620 ATCCTGCAATGTTTCATGAAGTT 57.266 34.783 8.41 2.93 0.00 2.66
3086 4620 8.074370 GGTGGGAAGATTAGCGTATTAAAAATC 58.926 37.037 0.00 0.00 0.00 2.17
3092 4626 4.652421 ACAGGTGGGAAGATTAGCGTATTA 59.348 41.667 0.00 0.00 0.00 0.98
3114 4648 1.432023 TTGGGGTTGGGGGAGAGAAC 61.432 60.000 0.00 0.00 0.00 3.01
3126 4660 7.634718 TGTTTTCCTTTTCTTTAATTGGGGTT 58.365 30.769 0.00 0.00 0.00 4.11
3134 4668 8.785329 AAGCAACATGTTTTCCTTTTCTTTAA 57.215 26.923 8.77 0.00 0.00 1.52
3186 4720 5.300034 TCACAAGAAAAGAGTCAATGCATGT 59.700 36.000 0.00 0.00 0.00 3.21
3189 4723 5.357878 ACTTCACAAGAAAAGAGTCAATGCA 59.642 36.000 0.00 0.00 32.35 3.96
3212 4746 2.336667 CAATGTCATTTTGGCCCGAAC 58.663 47.619 0.00 0.00 0.00 3.95
3228 4762 0.537653 TGGATGGGTGCAATGCAATG 59.462 50.000 10.44 0.00 41.47 2.82
3229 4763 0.538118 GTGGATGGGTGCAATGCAAT 59.462 50.000 10.44 0.00 41.47 3.56
3230 4764 0.830866 TGTGGATGGGTGCAATGCAA 60.831 50.000 10.44 0.00 41.47 4.08
3231 4765 0.615261 ATGTGGATGGGTGCAATGCA 60.615 50.000 2.72 2.72 35.60 3.96
3232 4766 0.538118 AATGTGGATGGGTGCAATGC 59.462 50.000 0.00 0.00 0.00 3.56
3268 4802 4.093743 TGGAATAGCTGTAGTTGACCTGA 58.906 43.478 0.00 0.00 0.00 3.86
3353 4887 6.006275 ACACCAGCATAAGGATCTAACAAT 57.994 37.500 0.00 0.00 0.00 2.71
3374 4908 5.152934 AGGAGGAGAACAGGTTAGTTTACA 58.847 41.667 0.00 0.00 0.00 2.41
3487 5021 6.563381 GCTGCAAATAACAATATGCATTCAGC 60.563 38.462 3.54 0.00 46.59 4.26
3526 5060 4.647424 TGGAAATTGTCAGGTTCACAAC 57.353 40.909 0.00 0.00 36.59 3.32
3537 5071 3.555966 CCTAGGACCCATGGAAATTGTC 58.444 50.000 15.22 11.44 0.00 3.18
3559 5093 1.328279 CTTCCCACAGTTTCAACCCC 58.672 55.000 0.00 0.00 0.00 4.95
3568 5102 2.025887 GTCCAATGATCCTTCCCACAGT 60.026 50.000 0.00 0.00 0.00 3.55
3684 5218 7.129622 AGTGTACACAAAATGTTGACAATACG 58.870 34.615 27.06 0.00 43.19 3.06
3763 5300 3.003689 AGAGAAACTGCACCATGAAAACG 59.996 43.478 0.00 0.00 0.00 3.60
3764 5301 4.276926 AGAGAGAAACTGCACCATGAAAAC 59.723 41.667 0.00 0.00 0.00 2.43
3770 5307 2.235898 GAGGAGAGAGAAACTGCACCAT 59.764 50.000 0.00 0.00 0.00 3.55
3788 5325 0.552848 AGCTGGAGAGAGGAGAGAGG 59.447 60.000 0.00 0.00 0.00 3.69
3795 5332 6.719370 AGAGTACATTATTAGCTGGAGAGAGG 59.281 42.308 0.00 0.00 0.00 3.69
3796 5333 7.759489 AGAGTACATTATTAGCTGGAGAGAG 57.241 40.000 0.00 0.00 0.00 3.20
3797 5334 8.441572 AGTAGAGTACATTATTAGCTGGAGAGA 58.558 37.037 0.00 0.00 0.00 3.10
3798 5335 8.630054 AGTAGAGTACATTATTAGCTGGAGAG 57.370 38.462 0.00 0.00 0.00 3.20
3896 5565 8.954950 ATGTAAGGAACTATCTGAATGAACTG 57.045 34.615 0.00 0.00 38.49 3.16
3933 5603 4.125703 CCACATCCTAGCTGAAGAATCAC 58.874 47.826 0.00 0.00 0.00 3.06
3945 5615 1.071385 GAGGCCATGTCCACATCCTAG 59.929 57.143 5.01 0.00 32.59 3.02
3976 5646 5.692115 TTGATATACCTTCAGACCTGCAA 57.308 39.130 0.00 0.00 0.00 4.08
3996 5666 1.821136 GCCAAAGGGGAGAACAGATTG 59.179 52.381 0.00 0.00 40.01 2.67
4054 5724 3.381590 AGCACCCTGAAAGTTTGAAGTTC 59.618 43.478 0.00 0.00 0.00 3.01
4078 5748 7.969536 TTGAAATCTTGGAAGTGAACTAGAG 57.030 36.000 0.00 0.00 0.00 2.43
4154 5824 7.278135 TCCTAGATGTTTCAGATGATTCCTTG 58.722 38.462 0.00 0.00 0.00 3.61
4167 5837 6.635030 AAAACCAACACTCCTAGATGTTTC 57.365 37.500 0.00 0.00 36.92 2.78
4284 5963 7.415592 TCAGGATGATATTGTAGCCTCTATG 57.584 40.000 0.00 0.00 42.56 2.23
4322 6001 6.058183 ACTAGGAAGTGAATCCAATGCATAC 58.942 40.000 0.00 0.00 42.27 2.39
4359 6038 3.515502 TCTCGGATGTTGACCTTCTTGAT 59.484 43.478 0.00 0.00 0.00 2.57
4401 6080 9.787435 TTTAGCAAACTAGAGTAATGGAAAGAA 57.213 29.630 0.00 0.00 0.00 2.52
4402 6081 9.959721 ATTTAGCAAACTAGAGTAATGGAAAGA 57.040 29.630 0.00 0.00 0.00 2.52
4559 6238 7.121168 TGGCTAACAAATTCTTACCATCTTCTG 59.879 37.037 0.00 0.00 0.00 3.02
4607 6286 8.916628 TGCATGCCACTACAGATAAAAATATA 57.083 30.769 16.68 0.00 0.00 0.86
4616 6295 6.080648 CAAAATATGCATGCCACTACAGAT 57.919 37.500 16.68 1.35 0.00 2.90
4649 6328 4.550422 GTTTTTCTCCAGCCTTTCATCAC 58.450 43.478 0.00 0.00 0.00 3.06
4660 6339 7.700656 ACAAAAAGTATTGACGTTTTTCTCCAG 59.299 33.333 0.00 0.00 42.32 3.86
4707 6393 5.601313 TGTAGTTTGGTAGAGGAGAAACACT 59.399 40.000 0.00 0.00 31.92 3.55
4714 6400 5.794894 ACAACATGTAGTTTGGTAGAGGAG 58.205 41.667 0.00 0.00 38.74 3.69
4808 6494 7.016153 TGCAAGTTCCTTCCTTATCTTAGAA 57.984 36.000 0.00 0.00 0.00 2.10
4809 6495 6.620877 TGCAAGTTCCTTCCTTATCTTAGA 57.379 37.500 0.00 0.00 0.00 2.10
4810 6496 6.484977 GGATGCAAGTTCCTTCCTTATCTTAG 59.515 42.308 0.00 0.00 0.00 2.18
4818 6504 2.503895 CAGGATGCAAGTTCCTTCCT 57.496 50.000 4.52 0.55 41.78 3.36
4879 6573 1.839424 AACAGCTGGCCTATGGTTTC 58.161 50.000 19.93 0.00 0.00 2.78
4899 6593 4.283363 AGAAGTCATGCATCTGAGTGTT 57.717 40.909 0.00 0.00 0.00 3.32
4913 6608 6.240145 TCACATCATGAATCCAAAGAAGTCA 58.760 36.000 0.00 0.00 33.02 3.41
4988 6684 5.377478 CACCTAAAGGACAAGAAAGGAACT 58.623 41.667 2.23 0.00 38.82 3.01
4993 6689 3.486383 TGGCACCTAAAGGACAAGAAAG 58.514 45.455 2.23 0.00 38.94 2.62
5094 6790 1.471119 CAATCACAGAGGCCATGCTT 58.529 50.000 5.01 0.00 0.00 3.91
5114 6810 6.020916 CGGTACACGTTTTGTATCTGATACAG 60.021 42.308 24.75 17.67 42.82 2.74
5127 6823 1.301953 GGAGCCCGGTACACGTTTT 60.302 57.895 0.00 0.00 42.24 2.43
5207 6903 6.323203 AGAGTTCATGAACAATCAACTTGG 57.677 37.500 33.92 0.00 43.47 3.61
5226 6922 7.768807 AGTACTTGTATGACTTCTCAAGAGT 57.231 36.000 10.09 0.00 39.39 3.24
5272 6968 3.244181 GGGTACACCGGTTTTAAGAGTCA 60.244 47.826 2.97 0.00 36.71 3.41
5314 7010 3.426309 AAGCGGGCCATCATGGAGG 62.426 63.158 8.30 0.00 40.96 4.30
5378 7074 2.985896 TCCCAAGAATCTTTGCTACCG 58.014 47.619 0.00 0.00 0.00 4.02
5417 7113 0.864455 GCTATCGCCACTCAATCAGC 59.136 55.000 0.00 0.00 0.00 4.26
5428 7124 1.661112 GACTTGTCAGTTGCTATCGCC 59.339 52.381 0.00 0.00 31.22 5.54
5509 7205 0.308684 GCATGGTGTGTATCATGGCG 59.691 55.000 0.00 0.00 44.05 5.69
5527 7223 2.563427 GTTGCCAGGAAAGCGAGC 59.437 61.111 0.00 0.00 0.00 5.03
5528 7224 1.600636 TGGTTGCCAGGAAAGCGAG 60.601 57.895 4.81 0.00 0.00 5.03
5529 7225 2.513395 TGGTTGCCAGGAAAGCGA 59.487 55.556 4.81 0.00 0.00 4.93
5546 7242 3.450096 GGGTACGTTGGAGTATTTCCTCT 59.550 47.826 0.00 0.00 46.92 3.69
5547 7243 3.431346 GGGGTACGTTGGAGTATTTCCTC 60.431 52.174 0.00 0.00 46.92 3.71
5596 7292 2.003548 ATGCCCCCTCTTCCTCACC 61.004 63.158 0.00 0.00 0.00 4.02
5606 7302 1.308128 TCTCACATCCATGCCCCCT 60.308 57.895 0.00 0.00 0.00 4.79
5608 7304 1.150081 CCTCTCACATCCATGCCCC 59.850 63.158 0.00 0.00 0.00 5.80
5609 7305 1.150081 CCCTCTCACATCCATGCCC 59.850 63.158 0.00 0.00 0.00 5.36
5610 7306 0.465097 CACCCTCTCACATCCATGCC 60.465 60.000 0.00 0.00 0.00 4.40
5611 7307 0.465097 CCACCCTCTCACATCCATGC 60.465 60.000 0.00 0.00 0.00 4.06
5648 7344 3.312697 GTCGCCCTAATGTTTGATTCCTC 59.687 47.826 0.00 0.00 0.00 3.71
5686 7382 8.611757 CCGATAATTAGAAACATTGACACATGA 58.388 33.333 0.00 0.00 0.00 3.07
5719 7415 2.671963 GACCCCGACCAAAGTGGC 60.672 66.667 0.00 0.00 42.67 5.01
5759 7455 5.543405 AGATCATCTTGAGGGAGGACAATAG 59.457 44.000 0.00 0.00 0.00 1.73
5761 7457 4.102838 CAGATCATCTTGAGGGAGGACAAT 59.897 45.833 0.00 0.00 0.00 2.71
5768 7464 3.766068 GATGCAGATCATCTTGAGGGA 57.234 47.619 0.00 0.00 46.29 4.20
5795 7491 7.309920 GCCAAGATATAGTAGACTCTACAAGC 58.690 42.308 16.92 6.28 0.00 4.01
5978 7674 3.771160 AGGCCGCCTTACCAGTCG 61.771 66.667 5.94 0.00 0.00 4.18
5979 7675 2.125106 CAGGCCGCCTTACCAGTC 60.125 66.667 9.99 0.00 0.00 3.51
5980 7676 4.410400 GCAGGCCGCCTTACCAGT 62.410 66.667 9.99 0.00 32.94 4.00
5981 7677 4.101448 AGCAGGCCGCCTTACCAG 62.101 66.667 9.99 0.00 44.04 4.00
5982 7678 4.096003 GAGCAGGCCGCCTTACCA 62.096 66.667 9.99 0.00 44.04 3.25
6057 7753 2.428085 GGGCTCGGAGACCTTCCTC 61.428 68.421 23.05 0.00 41.45 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.