Multiple sequence alignment - TraesCS5A01G195800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G195800 chr5A 100.000 2713 0 0 1 2713 398927897 398925185 0.000000e+00 5011.0
1 TraesCS5A01G195800 chr5A 96.604 265 8 1 2352 2615 347015981 347015717 3.210000e-119 438.0
2 TraesCS5A01G195800 chr5D 91.114 2397 117 36 1 2344 298862036 298864389 0.000000e+00 3158.0
3 TraesCS5A01G195800 chr5B 89.912 2389 122 48 1 2315 339534460 339536803 0.000000e+00 2966.0
4 TraesCS5A01G195800 chr2A 96.981 265 8 0 2350 2614 653300492 653300228 1.920000e-121 446.0
5 TraesCS5A01G195800 chr2A 97.328 262 7 0 2352 2613 722827242 722826981 1.920000e-121 446.0
6 TraesCS5A01G195800 chr2A 96.617 266 8 1 2350 2615 652870772 652871036 8.920000e-120 440.0
7 TraesCS5A01G195800 chr2A 95.556 270 11 1 2351 2620 120914409 120914141 5.370000e-117 431.0
8 TraesCS5A01G195800 chr3A 97.318 261 7 0 2352 2612 690072219 690072479 6.890000e-121 444.0
9 TraesCS5A01G195800 chr3A 96.241 266 8 2 2348 2613 79442749 79443012 4.150000e-118 435.0
10 TraesCS5A01G195800 chr4A 96.591 264 9 0 2350 2613 608002430 608002167 3.210000e-119 438.0
11 TraesCS5A01G195800 chr6A 95.588 272 12 0 2351 2622 578932401 578932672 1.150000e-118 436.0
12 TraesCS5A01G195800 chr6A 97.222 36 1 0 2678 2713 463530943 463530908 8.110000e-06 62.1
13 TraesCS5A01G195800 chr7B 97.222 36 1 0 2678 2713 232260030 232260065 8.110000e-06 62.1
14 TraesCS5A01G195800 chr7B 92.683 41 2 1 2639 2678 47120272 47120232 1.050000e-04 58.4
15 TraesCS5A01G195800 chr6B 97.222 36 1 0 2678 2713 713833482 713833517 8.110000e-06 62.1
16 TraesCS5A01G195800 chr6B 94.872 39 1 1 2676 2713 40447660 40447698 2.920000e-05 60.2
17 TraesCS5A01G195800 chr6D 97.059 34 1 0 2680 2713 446899091 446899124 1.050000e-04 58.4
18 TraesCS5A01G195800 chr4D 97.059 34 1 0 2680 2713 324227777 324227810 1.050000e-04 58.4
19 TraesCS5A01G195800 chr4D 97.059 34 1 0 2680 2713 423945330 423945363 1.050000e-04 58.4
20 TraesCS5A01G195800 chr4B 97.059 34 1 0 2680 2713 54741074 54741041 1.050000e-04 58.4
21 TraesCS5A01G195800 chr1D 97.059 34 1 0 2680 2713 59132071 59132104 1.050000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G195800 chr5A 398925185 398927897 2712 True 5011 5011 100.000 1 2713 1 chr5A.!!$R2 2712
1 TraesCS5A01G195800 chr5D 298862036 298864389 2353 False 3158 3158 91.114 1 2344 1 chr5D.!!$F1 2343
2 TraesCS5A01G195800 chr5B 339534460 339536803 2343 False 2966 2966 89.912 1 2315 1 chr5B.!!$F1 2314

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 619 1.035932 AGCATGGCCTCTGTGATTGC 61.036 55.0 3.32 0.5 0.0 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 1767 0.038159 GGAACAGAGACGACACCTGG 60.038 60.0 10.65 0.0 32.52 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.439129 AGGCAATTTCTACGCTTGGTTAC 59.561 43.478 0.00 0.00 0.00 2.50
77 78 5.652014 TGGTAAGAATTTGTTAGCCATCTGG 59.348 40.000 11.56 0.00 38.53 3.86
94 95 6.942576 GCCATCTGGTATTTATTCATGTACCT 59.057 38.462 8.82 0.00 37.92 3.08
185 191 5.917541 ATACTTTTTGTACAGTGGTCACG 57.082 39.130 0.00 0.00 33.45 4.35
295 303 6.389830 TGAGTATCAAGCACATGTGTTTTT 57.610 33.333 23.42 16.40 45.97 1.94
366 382 4.257536 TCGTTAAATGCATCACATGACG 57.742 40.909 0.00 6.22 39.60 4.35
386 402 2.679639 CGAAACCATAGGCCAGCTGTTA 60.680 50.000 13.81 2.63 0.00 2.41
400 417 3.688185 CAGCTGTTAACACTCAGATGCAT 59.312 43.478 5.25 0.00 40.27 3.96
403 420 4.436584 GCTGTTAACACTCAGATGCATGAC 60.437 45.833 2.46 0.00 34.02 3.06
404 421 4.898320 TGTTAACACTCAGATGCATGACT 58.102 39.130 2.46 0.00 0.00 3.41
405 422 5.308014 TGTTAACACTCAGATGCATGACTT 58.692 37.500 2.46 0.00 0.00 3.01
475 493 3.694072 GGTGTCCATGCATTTGCTTACTA 59.306 43.478 0.00 0.00 42.66 1.82
480 498 4.640201 TCCATGCATTTGCTTACTAGTTCC 59.360 41.667 0.00 0.00 42.66 3.62
581 599 8.567948 GTTTGGAAATTCTCATTCAAGTAGACA 58.432 33.333 0.00 0.00 0.00 3.41
601 619 1.035932 AGCATGGCCTCTGTGATTGC 61.036 55.000 3.32 0.50 0.00 3.56
616 634 7.330262 TCTGTGATTGCTGTATCAGATACAAA 58.670 34.615 21.35 15.05 44.44 2.83
694 712 6.500041 TGGTGTTTTAATGCACTGTTAGTTC 58.500 36.000 0.00 0.00 36.03 3.01
713 731 6.713762 AGTTCCAAGTTGATTGTTCATGAA 57.286 33.333 3.38 3.38 37.17 2.57
759 777 9.127277 GTACTTGAGTCCTATCTCTGAATTACT 57.873 37.037 0.00 0.00 35.68 2.24
801 819 4.080638 ACCCTTTCCTCTGAGATGTGAATC 60.081 45.833 6.17 0.00 0.00 2.52
812 830 4.202430 TGAGATGTGAATCCTCCATGATGG 60.202 45.833 4.74 4.74 39.43 3.51
865 883 2.068519 GCAGCACTTTTTATTGCCCAC 58.931 47.619 0.00 0.00 39.75 4.61
904 922 2.354259 GAATTCCAGTGGCAGACAGAG 58.646 52.381 3.51 0.00 0.00 3.35
915 933 2.001159 GCAGACAGAGCTGATTGAGTG 58.999 52.381 4.21 0.00 38.14 3.51
996 1014 4.353383 ACTTTACCTCCTTTGTCCAGAC 57.647 45.455 0.00 0.00 0.00 3.51
1014 1032 1.599071 GACGCCATGATACACACCATG 59.401 52.381 0.00 0.00 39.72 3.66
1015 1033 0.308684 CGCCATGATACACACCATGC 59.691 55.000 0.00 0.00 38.95 4.06
1016 1034 1.683943 GCCATGATACACACCATGCT 58.316 50.000 0.00 0.00 38.95 3.79
1017 1035 1.605710 GCCATGATACACACCATGCTC 59.394 52.381 0.00 0.00 38.95 4.26
1083 1101 4.860022 AGATAATTTTGGGAGAGGTGTGG 58.140 43.478 0.00 0.00 0.00 4.17
1092 1110 0.610687 GAGAGGTGTGGGTGAGGAAG 59.389 60.000 0.00 0.00 0.00 3.46
1093 1111 0.191064 AGAGGTGTGGGTGAGGAAGA 59.809 55.000 0.00 0.00 0.00 2.87
1094 1112 0.610687 GAGGTGTGGGTGAGGAAGAG 59.389 60.000 0.00 0.00 0.00 2.85
1098 1116 2.124996 TGGGTGAGGAAGAGGGGG 59.875 66.667 0.00 0.00 0.00 5.40
1173 1191 1.947456 GCGACCTTTGTCCTCTTGTTT 59.053 47.619 0.00 0.00 38.32 2.83
1206 1224 1.493772 TTCTAATTATCGGCGCCGTG 58.506 50.000 44.16 25.57 40.74 4.94
1398 1416 1.731720 CAGCTTCTTCCAGTACCAGC 58.268 55.000 0.00 0.00 0.00 4.85
1465 1483 2.433318 GTGGCTGCCGTCTCTGAC 60.433 66.667 14.98 0.27 0.00 3.51
1692 1716 1.074951 GGTAACAGGGGCAAGCACT 59.925 57.895 0.00 0.00 0.00 4.40
1726 1750 2.979649 CTGAGAGGCAGCAGCAGA 59.020 61.111 2.65 0.00 44.61 4.26
1743 1767 3.213249 CAGAGGCTTCTGCACATTTTC 57.787 47.619 13.41 0.00 43.98 2.29
1769 1793 1.085091 TCGTCTCTGTTCCTAGCGAC 58.915 55.000 0.00 0.00 0.00 5.19
1846 1889 2.925706 TTGCTCTGTGCCGGGGTA 60.926 61.111 2.18 0.00 42.00 3.69
1853 1896 2.032860 CTGTGCCGGGGTAGATCTGG 62.033 65.000 5.18 0.00 0.00 3.86
1864 1913 2.490351 GGTAGATCTGGGATCGGGTGTA 60.490 54.545 5.18 0.00 0.00 2.90
1883 1932 1.323271 ACCCTGCTGATCGATCGTGT 61.323 55.000 20.03 5.18 0.00 4.49
1958 2017 1.407936 AGACTCACTCACAGCTGTGT 58.592 50.000 38.41 23.27 45.76 3.72
1966 2044 0.033920 TCACAGCTGTGTCGATTGCT 59.966 50.000 38.41 3.43 45.76 3.91
1979 2057 2.102084 TCGATTGCTCTTCTCCCATGAG 59.898 50.000 0.00 0.00 40.17 2.90
1985 2063 1.138661 CTCTTCTCCCATGAGCCACTC 59.861 57.143 0.00 0.00 38.58 3.51
1990 2068 0.324368 TCCCATGAGCCACTCTACGT 60.324 55.000 0.00 0.00 0.00 3.57
2013 2091 2.907696 TCTGAAACGGGGGTTAGATTGA 59.092 45.455 0.00 0.00 0.00 2.57
2014 2092 3.521937 TCTGAAACGGGGGTTAGATTGAT 59.478 43.478 0.00 0.00 0.00 2.57
2015 2093 4.717778 TCTGAAACGGGGGTTAGATTGATA 59.282 41.667 0.00 0.00 0.00 2.15
2016 2094 5.031066 TGAAACGGGGGTTAGATTGATAG 57.969 43.478 0.00 0.00 0.00 2.08
2017 2095 3.487120 AACGGGGGTTAGATTGATAGC 57.513 47.619 0.00 0.00 0.00 2.97
2068 2151 0.031857 TTGCATGTTGCCGTGGAAAG 59.968 50.000 0.00 0.00 44.23 2.62
2100 2183 5.776173 TTTCGTGAAATTCCTTTTGGCTA 57.224 34.783 0.00 0.00 40.12 3.93
2139 2223 1.133199 TGGGGTGAAAAGAATGGCACT 60.133 47.619 0.00 0.00 0.00 4.40
2160 2244 0.108992 ATGGAATGCTGTGCTTTGCG 60.109 50.000 5.55 0.00 36.98 4.85
2222 2306 3.430895 GCGAGAAACGGTGTTCTGATTTA 59.569 43.478 9.31 0.00 37.98 1.40
2268 2354 1.747355 GATGGACGACGGTCTCCTTTA 59.253 52.381 20.06 7.47 42.97 1.85
2301 2387 0.608308 CACCTCCCCCGTTCTTTTCC 60.608 60.000 0.00 0.00 0.00 3.13
2344 2433 4.434857 GCTCGTGCTCTTAAAAAGCTACTG 60.435 45.833 1.41 5.22 40.50 2.74
2345 2434 4.628074 TCGTGCTCTTAAAAAGCTACTGT 58.372 39.130 10.04 0.00 40.50 3.55
2346 2435 5.775686 TCGTGCTCTTAAAAAGCTACTGTA 58.224 37.500 10.04 0.00 40.50 2.74
2347 2436 5.632347 TCGTGCTCTTAAAAAGCTACTGTAC 59.368 40.000 10.04 0.00 40.50 2.90
2348 2437 5.163982 CGTGCTCTTAAAAAGCTACTGTACC 60.164 44.000 10.04 0.00 40.50 3.34
2349 2438 5.699458 GTGCTCTTAAAAAGCTACTGTACCA 59.301 40.000 10.04 0.00 40.50 3.25
2350 2439 5.932303 TGCTCTTAAAAAGCTACTGTACCAG 59.068 40.000 10.04 0.00 40.50 4.00
2351 2440 6.463897 TGCTCTTAAAAAGCTACTGTACCAGT 60.464 38.462 10.04 2.09 41.46 4.00
2352 2441 7.095270 GCTCTTAAAAAGCTACTGTACCAGTA 58.905 38.462 4.22 4.22 44.77 2.74
2353 2442 7.063191 GCTCTTAAAAAGCTACTGTACCAGTAC 59.937 40.741 0.86 0.86 44.77 2.73
2354 2443 8.186709 TCTTAAAAAGCTACTGTACCAGTACT 57.813 34.615 9.24 0.00 43.46 2.73
2355 2444 8.302438 TCTTAAAAAGCTACTGTACCAGTACTC 58.698 37.037 9.24 0.00 43.46 2.59
2356 2445 5.402997 AAAAGCTACTGTACCAGTACTCC 57.597 43.478 9.24 0.00 43.46 3.85
2357 2446 3.015675 AGCTACTGTACCAGTACTCCC 57.984 52.381 9.24 0.00 43.46 4.30
2358 2447 2.581709 AGCTACTGTACCAGTACTCCCT 59.418 50.000 9.24 0.00 43.46 4.20
2359 2448 2.950975 GCTACTGTACCAGTACTCCCTC 59.049 54.545 9.24 0.00 43.46 4.30
2360 2449 2.528673 ACTGTACCAGTACTCCCTCC 57.471 55.000 9.24 0.00 43.46 4.30
2361 2450 1.340795 ACTGTACCAGTACTCCCTCCG 60.341 57.143 9.24 0.00 43.46 4.63
2362 2451 0.033796 TGTACCAGTACTCCCTCCGG 60.034 60.000 9.24 0.00 37.00 5.14
2363 2452 0.033699 GTACCAGTACTCCCTCCGGT 60.034 60.000 0.00 5.71 33.45 5.28
2364 2453 0.257039 TACCAGTACTCCCTCCGGTC 59.743 60.000 0.00 0.00 0.00 4.79
2365 2454 1.757340 CCAGTACTCCCTCCGGTCC 60.757 68.421 0.00 0.00 0.00 4.46
2366 2455 1.306970 CAGTACTCCCTCCGGTCCT 59.693 63.158 0.00 0.00 0.00 3.85
2367 2456 0.324460 CAGTACTCCCTCCGGTCCTT 60.324 60.000 0.00 0.00 0.00 3.36
2368 2457 0.412640 AGTACTCCCTCCGGTCCTTT 59.587 55.000 0.00 0.00 0.00 3.11
2369 2458 1.203275 AGTACTCCCTCCGGTCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
2370 2459 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
2371 2460 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
2372 2461 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
2373 2462 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
2374 2463 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
2375 2464 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
2376 2465 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
2377 2466 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
2378 2467 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
2379 2468 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
2380 2469 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
2381 2470 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
2382 2471 4.881850 CCGGTCCTTTTTACTCTGCATATT 59.118 41.667 0.00 0.00 0.00 1.28
2383 2472 6.053005 CCGGTCCTTTTTACTCTGCATATTA 58.947 40.000 0.00 0.00 0.00 0.98
2384 2473 6.202954 CCGGTCCTTTTTACTCTGCATATTAG 59.797 42.308 0.00 0.00 0.00 1.73
2385 2474 6.984474 CGGTCCTTTTTACTCTGCATATTAGA 59.016 38.462 0.00 0.00 0.00 2.10
2386 2475 7.494625 CGGTCCTTTTTACTCTGCATATTAGAA 59.505 37.037 0.00 0.00 0.00 2.10
2387 2476 9.343539 GGTCCTTTTTACTCTGCATATTAGAAT 57.656 33.333 0.00 0.00 0.00 2.40
2408 2497 8.964476 AGAATTCTCTAAAGTCAAACTTCACA 57.036 30.769 0.88 0.00 37.47 3.58
2409 2498 9.396022 AGAATTCTCTAAAGTCAAACTTCACAA 57.604 29.630 0.88 0.00 37.47 3.33
2454 2543 5.864418 AAAATATCAACATCTGCCATGCT 57.136 34.783 0.00 0.00 0.00 3.79
2455 2544 6.964807 AAAATATCAACATCTGCCATGCTA 57.035 33.333 0.00 0.00 0.00 3.49
2456 2545 6.964807 AAATATCAACATCTGCCATGCTAA 57.035 33.333 0.00 0.00 0.00 3.09
2457 2546 6.964807 AATATCAACATCTGCCATGCTAAA 57.035 33.333 0.00 0.00 0.00 1.85
2458 2547 6.964807 ATATCAACATCTGCCATGCTAAAA 57.035 33.333 0.00 0.00 0.00 1.52
2459 2548 5.864418 ATCAACATCTGCCATGCTAAAAT 57.136 34.783 0.00 0.00 0.00 1.82
2460 2549 5.664294 TCAACATCTGCCATGCTAAAATT 57.336 34.783 0.00 0.00 0.00 1.82
2461 2550 6.772360 TCAACATCTGCCATGCTAAAATTA 57.228 33.333 0.00 0.00 0.00 1.40
2462 2551 7.350744 TCAACATCTGCCATGCTAAAATTAT 57.649 32.000 0.00 0.00 0.00 1.28
2463 2552 8.462589 TCAACATCTGCCATGCTAAAATTATA 57.537 30.769 0.00 0.00 0.00 0.98
2464 2553 8.352201 TCAACATCTGCCATGCTAAAATTATAC 58.648 33.333 0.00 0.00 0.00 1.47
2465 2554 7.822161 ACATCTGCCATGCTAAAATTATACA 57.178 32.000 0.00 0.00 0.00 2.29
2466 2555 8.236585 ACATCTGCCATGCTAAAATTATACAA 57.763 30.769 0.00 0.00 0.00 2.41
2467 2556 8.863086 ACATCTGCCATGCTAAAATTATACAAT 58.137 29.630 0.00 0.00 0.00 2.71
2493 2582 8.627208 ATGAAACTTTAAGTCATGACACATCT 57.373 30.769 27.02 3.53 30.84 2.90
2494 2583 9.725019 ATGAAACTTTAAGTCATGACACATCTA 57.275 29.630 27.02 7.86 30.84 1.98
2495 2584 9.725019 TGAAACTTTAAGTCATGACACATCTAT 57.275 29.630 27.02 7.36 0.00 1.98
2498 2587 9.725019 AACTTTAAGTCATGACACATCTATTGA 57.275 29.630 27.02 5.47 0.00 2.57
2499 2588 9.896645 ACTTTAAGTCATGACACATCTATTGAT 57.103 29.630 27.02 0.00 0.00 2.57
2561 2650 3.263602 GTTGGTCAAACTTTACGAGGC 57.736 47.619 0.00 0.00 35.75 4.70
2562 2651 2.876550 GTTGGTCAAACTTTACGAGGCT 59.123 45.455 0.00 0.00 35.75 4.58
2563 2652 3.202829 TGGTCAAACTTTACGAGGCTT 57.797 42.857 0.00 0.00 0.00 4.35
2564 2653 2.875933 TGGTCAAACTTTACGAGGCTTG 59.124 45.455 0.00 0.00 0.00 4.01
2565 2654 3.135994 GGTCAAACTTTACGAGGCTTGA 58.864 45.455 9.20 0.00 32.24 3.02
2566 2655 3.059120 GGTCAAACTTTACGAGGCTTGAC 60.059 47.826 9.20 5.19 44.00 3.18
2567 2656 3.808174 GTCAAACTTTACGAGGCTTGACT 59.192 43.478 9.20 0.00 42.80 3.41
2568 2657 4.272748 GTCAAACTTTACGAGGCTTGACTT 59.727 41.667 9.20 0.00 42.80 3.01
2569 2658 4.510340 TCAAACTTTACGAGGCTTGACTTC 59.490 41.667 9.20 0.00 30.70 3.01
2570 2659 3.746045 ACTTTACGAGGCTTGACTTCA 57.254 42.857 9.20 0.00 0.00 3.02
2571 2660 3.654414 ACTTTACGAGGCTTGACTTCAG 58.346 45.455 9.20 0.00 0.00 3.02
2572 2661 3.069729 ACTTTACGAGGCTTGACTTCAGT 59.930 43.478 9.20 0.34 0.00 3.41
2573 2662 3.299340 TTACGAGGCTTGACTTCAGTC 57.701 47.619 9.20 0.00 44.97 3.51
2589 2678 8.462143 GACTTCAGTCAAATCTTGTATACGAA 57.538 34.615 1.86 0.00 44.18 3.85
2590 2679 8.240883 ACTTCAGTCAAATCTTGTATACGAAC 57.759 34.615 0.00 0.00 0.00 3.95
2591 2680 8.088981 ACTTCAGTCAAATCTTGTATACGAACT 58.911 33.333 0.00 0.00 0.00 3.01
2592 2681 9.569167 CTTCAGTCAAATCTTGTATACGAACTA 57.431 33.333 0.00 0.00 0.00 2.24
2593 2682 9.917129 TTCAGTCAAATCTTGTATACGAACTAA 57.083 29.630 0.00 0.00 0.00 2.24
2594 2683 9.917129 TCAGTCAAATCTTGTATACGAACTAAA 57.083 29.630 0.00 0.00 0.00 1.85
2601 2690 8.713737 ATCTTGTATACGAACTAAAAAGGACC 57.286 34.615 0.00 0.00 0.00 4.46
2602 2691 6.808212 TCTTGTATACGAACTAAAAAGGACCG 59.192 38.462 0.00 0.00 0.00 4.79
2603 2692 5.410067 TGTATACGAACTAAAAAGGACCGG 58.590 41.667 0.00 0.00 0.00 5.28
2604 2693 4.806640 ATACGAACTAAAAAGGACCGGA 57.193 40.909 9.46 0.00 0.00 5.14
2605 2694 3.036075 ACGAACTAAAAAGGACCGGAG 57.964 47.619 9.46 0.00 0.00 4.63
2622 2711 4.848562 CGGAGGAAGTACTATGCATACA 57.151 45.455 1.16 0.00 0.00 2.29
2623 2712 5.196341 CGGAGGAAGTACTATGCATACAA 57.804 43.478 1.16 0.00 0.00 2.41
2624 2713 4.982916 CGGAGGAAGTACTATGCATACAAC 59.017 45.833 1.16 4.05 0.00 3.32
2625 2714 5.298347 GGAGGAAGTACTATGCATACAACC 58.702 45.833 1.16 4.20 0.00 3.77
2626 2715 5.163343 GGAGGAAGTACTATGCATACAACCA 60.163 44.000 1.16 0.00 0.00 3.67
2627 2716 5.671493 AGGAAGTACTATGCATACAACCAC 58.329 41.667 1.16 1.78 0.00 4.16
2628 2717 4.506654 GGAAGTACTATGCATACAACCACG 59.493 45.833 1.16 0.00 0.00 4.94
2629 2718 4.730949 AGTACTATGCATACAACCACGT 57.269 40.909 1.16 0.00 0.00 4.49
2630 2719 4.679662 AGTACTATGCATACAACCACGTC 58.320 43.478 1.16 0.00 0.00 4.34
2631 2720 3.603158 ACTATGCATACAACCACGTCA 57.397 42.857 1.16 0.00 0.00 4.35
2632 2721 3.932822 ACTATGCATACAACCACGTCAA 58.067 40.909 1.16 0.00 0.00 3.18
2633 2722 4.320023 ACTATGCATACAACCACGTCAAA 58.680 39.130 1.16 0.00 0.00 2.69
2634 2723 4.757657 ACTATGCATACAACCACGTCAAAA 59.242 37.500 1.16 0.00 0.00 2.44
2635 2724 4.576216 ATGCATACAACCACGTCAAAAA 57.424 36.364 0.00 0.00 0.00 1.94
2664 2753 8.089115 ACTCTCTTGTAAACAAATGTAAGAGC 57.911 34.615 14.64 0.00 40.36 4.09
2665 2754 7.715249 ACTCTCTTGTAAACAAATGTAAGAGCA 59.285 33.333 14.64 7.06 40.36 4.26
2666 2755 8.621532 TCTCTTGTAAACAAATGTAAGAGCAT 57.378 30.769 14.64 0.00 40.36 3.79
2667 2756 9.066892 TCTCTTGTAAACAAATGTAAGAGCATT 57.933 29.630 14.64 0.00 40.36 3.56
2668 2757 9.683069 CTCTTGTAAACAAATGTAAGAGCATTT 57.317 29.630 9.61 0.00 46.37 2.32
2702 2791 8.324163 ACAAAAATAAGAGCGTTTAGATCACT 57.676 30.769 0.00 0.00 37.82 3.41
2703 2792 9.431887 ACAAAAATAAGAGCGTTTAGATCACTA 57.568 29.630 0.00 0.00 37.82 2.74
2704 2793 9.690434 CAAAAATAAGAGCGTTTAGATCACTAC 57.310 33.333 0.00 0.00 37.82 2.73
2705 2794 9.654663 AAAAATAAGAGCGTTTAGATCACTACT 57.345 29.630 0.00 0.00 37.82 2.57
2706 2795 9.654663 AAAATAAGAGCGTTTAGATCACTACTT 57.345 29.630 0.00 0.00 37.82 2.24
2707 2796 9.654663 AAATAAGAGCGTTTAGATCACTACTTT 57.345 29.630 0.00 0.00 37.82 2.66
2711 2800 8.635877 AGAGCGTTTAGATCACTACTTTAATG 57.364 34.615 0.00 0.00 37.82 1.90
2712 2801 8.467598 AGAGCGTTTAGATCACTACTTTAATGA 58.532 33.333 0.00 0.00 37.82 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 7.121168 TGGCTAACAAATTCTTACCATCTTCTG 59.879 37.037 0.00 0.00 0.00 3.02
94 95 8.916628 TGCATGCCACTACAGATAAAAATATA 57.083 30.769 16.68 0.00 0.00 0.86
103 104 6.080648 CAAAATATGCATGCCACTACAGAT 57.919 37.500 16.68 1.35 0.00 2.90
136 137 4.550422 GTTTTTCTCCAGCCTTTCATCAC 58.450 43.478 0.00 0.00 0.00 3.06
147 148 7.700656 ACAAAAAGTATTGACGTTTTTCTCCAG 59.299 33.333 0.00 0.00 42.32 3.86
194 200 5.601313 TGTAGTTTGGTAGAGGAGAAACACT 59.399 40.000 0.00 0.00 31.92 3.55
201 209 5.794894 ACAACATGTAGTTTGGTAGAGGAG 58.205 41.667 0.00 0.00 38.74 3.69
295 303 7.016153 TGCAAGTTCCTTCCTTATCTTAGAA 57.984 36.000 0.00 0.00 0.00 2.10
296 304 6.620877 TGCAAGTTCCTTCCTTATCTTAGA 57.379 37.500 0.00 0.00 0.00 2.10
297 305 6.484977 GGATGCAAGTTCCTTCCTTATCTTAG 59.515 42.308 0.00 0.00 0.00 2.18
305 313 2.503895 CAGGATGCAAGTTCCTTCCT 57.496 50.000 4.52 0.55 41.78 3.36
366 382 1.839424 AACAGCTGGCCTATGGTTTC 58.161 50.000 19.93 0.00 0.00 2.78
386 402 4.283363 AGAAGTCATGCATCTGAGTGTT 57.717 40.909 0.00 0.00 0.00 3.32
400 417 6.240145 TCACATCATGAATCCAAAGAAGTCA 58.760 36.000 0.00 0.00 33.02 3.41
475 493 5.377478 CACCTAAAGGACAAGAAAGGAACT 58.623 41.667 2.23 0.00 38.82 3.01
480 498 3.486383 TGGCACCTAAAGGACAAGAAAG 58.514 45.455 2.23 0.00 38.94 2.62
581 599 1.471119 CAATCACAGAGGCCATGCTT 58.529 50.000 5.01 0.00 0.00 3.91
601 619 6.020916 CGGTACACGTTTTGTATCTGATACAG 60.021 42.308 24.75 17.67 42.82 2.74
616 634 0.971959 TATGGAGCCCGGTACACGTT 60.972 55.000 0.00 0.00 42.24 3.99
694 712 6.323203 AGAGTTCATGAACAATCAACTTGG 57.677 37.500 33.92 0.00 43.47 3.61
713 731 7.768807 AGTACTTGTATGACTTCTCAAGAGT 57.231 36.000 10.09 0.00 39.39 3.24
759 777 3.244181 GGGTACACCGGTTTTAAGAGTCA 60.244 47.826 2.97 0.00 36.71 3.41
801 819 3.426309 AAGCGGGCCATCATGGAGG 62.426 63.158 8.30 0.00 40.96 4.30
865 883 2.985896 TCCCAAGAATCTTTGCTACCG 58.014 47.619 0.00 0.00 0.00 4.02
904 922 0.864455 GCTATCGCCACTCAATCAGC 59.136 55.000 0.00 0.00 0.00 4.26
915 933 1.661112 GACTTGTCAGTTGCTATCGCC 59.339 52.381 0.00 0.00 31.22 5.54
996 1014 0.308684 GCATGGTGTGTATCATGGCG 59.691 55.000 0.00 0.00 44.05 5.69
1014 1032 2.563427 GTTGCCAGGAAAGCGAGC 59.437 61.111 0.00 0.00 0.00 5.03
1015 1033 1.600636 TGGTTGCCAGGAAAGCGAG 60.601 57.895 4.81 0.00 0.00 5.03
1016 1034 2.513395 TGGTTGCCAGGAAAGCGA 59.487 55.556 4.81 0.00 0.00 4.93
1035 1053 2.502947 GGGGTACGTTGGAGTATTTCCT 59.497 50.000 0.00 0.00 46.92 3.36
1036 1054 2.420547 GGGGGTACGTTGGAGTATTTCC 60.421 54.545 0.00 0.00 46.98 3.13
1083 1101 2.003548 ATGCCCCCTCTTCCTCACC 61.004 63.158 0.00 0.00 0.00 4.02
1092 1110 1.150081 CTCACATCCATGCCCCCTC 59.850 63.158 0.00 0.00 0.00 4.30
1093 1111 1.308128 TCTCACATCCATGCCCCCT 60.308 57.895 0.00 0.00 0.00 4.79
1094 1112 1.150081 CTCTCACATCCATGCCCCC 59.850 63.158 0.00 0.00 0.00 5.40
1098 1116 0.465097 CCACCCTCTCACATCCATGC 60.465 60.000 0.00 0.00 0.00 4.06
1135 1153 3.312697 GTCGCCCTAATGTTTGATTCCTC 59.687 47.826 0.00 0.00 0.00 3.71
1173 1191 8.611757 CCGATAATTAGAAACATTGACACATGA 58.388 33.333 0.00 0.00 0.00 3.07
1206 1224 2.671963 GACCCCGACCAAAGTGGC 60.672 66.667 0.00 0.00 42.67 5.01
1246 1264 5.543405 AGATCATCTTGAGGGAGGACAATAG 59.457 44.000 0.00 0.00 0.00 1.73
1248 1266 4.102838 CAGATCATCTTGAGGGAGGACAAT 59.897 45.833 0.00 0.00 0.00 2.71
1255 1273 3.766068 GATGCAGATCATCTTGAGGGA 57.234 47.619 0.00 0.00 46.29 4.20
1282 1300 7.309920 GCCAAGATATAGTAGACTCTACAAGC 58.690 42.308 16.92 6.28 0.00 4.01
1465 1483 3.771160 AGGCCGCCTTACCAGTCG 61.771 66.667 5.94 0.00 0.00 4.18
1466 1484 2.125106 CAGGCCGCCTTACCAGTC 60.125 66.667 9.99 0.00 0.00 3.51
1467 1485 4.410400 GCAGGCCGCCTTACCAGT 62.410 66.667 9.99 0.00 32.94 4.00
1468 1486 4.101448 AGCAGGCCGCCTTACCAG 62.101 66.667 9.99 0.00 44.04 4.00
1469 1487 4.096003 GAGCAGGCCGCCTTACCA 62.096 66.667 9.99 0.00 44.04 3.25
1544 1562 2.428085 GGGCTCGGAGACCTTCCTC 61.428 68.421 23.05 0.00 41.45 3.71
1601 1625 3.473647 CTCGGGCAGGCATCCTCA 61.474 66.667 0.00 0.00 0.00 3.86
1692 1716 2.686106 GTAGCCCTTCCCACGGGA 60.686 66.667 0.00 0.00 44.90 5.14
1724 1748 2.165998 GGAAAATGTGCAGAAGCCTCT 58.834 47.619 0.00 0.00 41.13 3.69
1725 1749 1.888512 TGGAAAATGTGCAGAAGCCTC 59.111 47.619 0.00 0.00 41.13 4.70
1726 1750 1.999648 TGGAAAATGTGCAGAAGCCT 58.000 45.000 0.00 0.00 41.13 4.58
1743 1767 0.038159 GGAACAGAGACGACACCTGG 60.038 60.000 10.65 0.00 32.52 4.45
1769 1793 3.809279 ACCACATCATACACACGCATATG 59.191 43.478 0.00 0.00 0.00 1.78
1818 1861 2.908634 CACAGAGCAACGAACACAATC 58.091 47.619 0.00 0.00 0.00 2.67
1844 1887 1.705873 ACACCCGATCCCAGATCTAC 58.294 55.000 0.00 0.00 0.00 2.59
1846 1889 1.705873 GTACACCCGATCCCAGATCT 58.294 55.000 3.30 0.00 0.00 2.75
1864 1913 1.323271 ACACGATCGATCAGCAGGGT 61.323 55.000 24.34 12.59 0.00 4.34
1927 1983 5.068591 TGTGAGTGAGTCTTGCTTGTACTTA 59.931 40.000 0.00 0.00 0.00 2.24
1935 1994 1.047002 AGCTGTGAGTGAGTCTTGCT 58.953 50.000 0.00 0.00 0.00 3.91
1958 2017 2.102084 CTCATGGGAGAAGAGCAATCGA 59.898 50.000 0.00 0.00 44.26 3.59
1966 2044 1.198713 GAGTGGCTCATGGGAGAAGA 58.801 55.000 0.00 0.00 44.26 2.87
1979 2057 3.790212 GTTTCAGAAACGTAGAGTGGC 57.210 47.619 10.30 0.00 0.00 5.01
1990 2068 4.076394 CAATCTAACCCCCGTTTCAGAAA 58.924 43.478 0.00 0.00 33.17 2.52
2031 2109 0.314935 AAAGGTTCATGCGTTGCAGG 59.685 50.000 0.00 0.00 43.65 4.85
2115 2199 3.393941 TGCCATTCTTTTCACCCCATTTT 59.606 39.130 0.00 0.00 0.00 1.82
2139 2223 2.415759 CGCAAAGCACAGCATTCCATTA 60.416 45.455 0.00 0.00 0.00 1.90
2160 2244 2.644992 CCGCAGTGGAAGCAAACC 59.355 61.111 0.00 0.00 42.00 3.27
2214 2298 3.198068 GCTCAAGGTCGCATAAATCAGA 58.802 45.455 0.00 0.00 0.00 3.27
2253 2339 1.172175 GGAGTAAAGGAGACCGTCGT 58.828 55.000 0.00 0.00 0.00 4.34
2254 2340 1.135460 GTGGAGTAAAGGAGACCGTCG 60.135 57.143 0.00 0.00 0.00 5.12
2255 2341 1.135460 CGTGGAGTAAAGGAGACCGTC 60.135 57.143 0.00 0.00 0.00 4.79
2268 2354 1.745320 GAGGTGTGGTGTCGTGGAGT 61.745 60.000 0.00 0.00 0.00 3.85
2301 2387 1.734477 CCAGTTGTGCGTCTCGAGG 60.734 63.158 13.56 0.00 0.00 4.63
2357 2446 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
2358 2447 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
2359 2448 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
2360 2449 6.984474 TCTAATATGCAGAGTAAAAAGGACCG 59.016 38.462 0.00 0.00 0.00 4.79
2361 2450 8.732746 TTCTAATATGCAGAGTAAAAAGGACC 57.267 34.615 0.00 0.00 0.00 4.46
2383 2472 8.964476 TGTGAAGTTTGACTTTAGAGAATTCT 57.036 30.769 7.95 7.95 38.80 2.40
2386 2475 9.178758 ACTTTGTGAAGTTTGACTTTAGAGAAT 57.821 29.630 0.00 0.00 43.48 2.40
2387 2476 8.561738 ACTTTGTGAAGTTTGACTTTAGAGAA 57.438 30.769 0.00 0.00 43.48 2.87
2431 2520 6.229936 AGCATGGCAGATGTTGATATTTTT 57.770 33.333 0.00 0.00 0.00 1.94
2432 2521 5.864418 AGCATGGCAGATGTTGATATTTT 57.136 34.783 0.00 0.00 0.00 1.82
2433 2522 6.964807 TTAGCATGGCAGATGTTGATATTT 57.035 33.333 0.00 0.00 0.00 1.40
2434 2523 6.964807 TTTAGCATGGCAGATGTTGATATT 57.035 33.333 0.00 0.00 0.00 1.28
2435 2524 6.964807 TTTTAGCATGGCAGATGTTGATAT 57.035 33.333 0.00 0.00 0.00 1.63
2436 2525 6.964807 ATTTTAGCATGGCAGATGTTGATA 57.035 33.333 0.00 0.00 0.00 2.15
2437 2526 5.864418 ATTTTAGCATGGCAGATGTTGAT 57.136 34.783 0.00 0.00 0.00 2.57
2438 2527 5.664294 AATTTTAGCATGGCAGATGTTGA 57.336 34.783 0.00 0.00 0.00 3.18
2439 2528 8.136800 TGTATAATTTTAGCATGGCAGATGTTG 58.863 33.333 0.00 0.00 0.00 3.33
2440 2529 8.236585 TGTATAATTTTAGCATGGCAGATGTT 57.763 30.769 0.00 0.00 0.00 2.71
2441 2530 7.822161 TGTATAATTTTAGCATGGCAGATGT 57.178 32.000 0.00 0.00 0.00 3.06
2467 2556 9.725019 AGATGTGTCATGACTTAAAGTTTCATA 57.275 29.630 25.55 1.27 0.00 2.15
2468 2557 8.627208 AGATGTGTCATGACTTAAAGTTTCAT 57.373 30.769 25.55 14.42 0.00 2.57
2469 2558 9.725019 ATAGATGTGTCATGACTTAAAGTTTCA 57.275 29.630 25.55 11.05 0.00 2.69
2472 2561 9.725019 TCAATAGATGTGTCATGACTTAAAGTT 57.275 29.630 25.55 10.34 0.00 2.66
2473 2562 9.896645 ATCAATAGATGTGTCATGACTTAAAGT 57.103 29.630 25.55 9.39 31.91 2.66
2541 2630 2.876550 AGCCTCGTAAAGTTTGACCAAC 59.123 45.455 0.00 0.00 35.32 3.77
2542 2631 3.202829 AGCCTCGTAAAGTTTGACCAA 57.797 42.857 0.00 0.00 0.00 3.67
2543 2632 2.875933 CAAGCCTCGTAAAGTTTGACCA 59.124 45.455 0.00 0.00 0.00 4.02
2544 2633 3.059120 GTCAAGCCTCGTAAAGTTTGACC 60.059 47.826 8.09 0.00 39.44 4.02
2545 2634 3.808174 AGTCAAGCCTCGTAAAGTTTGAC 59.192 43.478 10.54 10.54 42.37 3.18
2546 2635 4.067972 AGTCAAGCCTCGTAAAGTTTGA 57.932 40.909 0.00 0.00 0.00 2.69
2547 2636 4.272504 TGAAGTCAAGCCTCGTAAAGTTTG 59.727 41.667 0.00 0.00 0.00 2.93
2548 2637 4.448210 TGAAGTCAAGCCTCGTAAAGTTT 58.552 39.130 0.00 0.00 0.00 2.66
2549 2638 4.058817 CTGAAGTCAAGCCTCGTAAAGTT 58.941 43.478 0.00 0.00 0.00 2.66
2550 2639 3.069729 ACTGAAGTCAAGCCTCGTAAAGT 59.930 43.478 0.00 0.00 0.00 2.66
2551 2640 3.654414 ACTGAAGTCAAGCCTCGTAAAG 58.346 45.455 0.00 0.00 0.00 1.85
2552 2641 3.650139 GACTGAAGTCAAGCCTCGTAAA 58.350 45.455 5.58 0.00 44.18 2.01
2553 2642 3.299340 GACTGAAGTCAAGCCTCGTAA 57.701 47.619 5.58 0.00 44.18 3.18
2555 2644 3.896317 GACTGAAGTCAAGCCTCGT 57.104 52.632 5.58 0.00 44.18 4.18
2564 2653 8.373992 GTTCGTATACAAGATTTGACTGAAGTC 58.626 37.037 3.32 3.41 44.97 3.01
2565 2654 8.088981 AGTTCGTATACAAGATTTGACTGAAGT 58.911 33.333 3.32 0.00 0.00 3.01
2566 2655 8.467402 AGTTCGTATACAAGATTTGACTGAAG 57.533 34.615 3.32 0.00 0.00 3.02
2567 2656 9.917129 TTAGTTCGTATACAAGATTTGACTGAA 57.083 29.630 3.32 0.00 0.00 3.02
2568 2657 9.917129 TTTAGTTCGTATACAAGATTTGACTGA 57.083 29.630 3.32 0.00 0.00 3.41
2575 2664 9.159364 GGTCCTTTTTAGTTCGTATACAAGATT 57.841 33.333 3.32 0.00 0.00 2.40
2576 2665 7.490402 CGGTCCTTTTTAGTTCGTATACAAGAT 59.510 37.037 3.32 0.00 0.00 2.40
2577 2666 6.808212 CGGTCCTTTTTAGTTCGTATACAAGA 59.192 38.462 3.32 0.00 0.00 3.02
2578 2667 6.035327 CCGGTCCTTTTTAGTTCGTATACAAG 59.965 42.308 3.32 0.00 0.00 3.16
2579 2668 5.868801 CCGGTCCTTTTTAGTTCGTATACAA 59.131 40.000 3.32 0.00 0.00 2.41
2580 2669 5.184864 TCCGGTCCTTTTTAGTTCGTATACA 59.815 40.000 0.00 0.00 0.00 2.29
2581 2670 5.650543 TCCGGTCCTTTTTAGTTCGTATAC 58.349 41.667 0.00 0.00 0.00 1.47
2582 2671 5.163519 CCTCCGGTCCTTTTTAGTTCGTATA 60.164 44.000 0.00 0.00 0.00 1.47
2583 2672 4.382362 CCTCCGGTCCTTTTTAGTTCGTAT 60.382 45.833 0.00 0.00 0.00 3.06
2584 2673 3.056607 CCTCCGGTCCTTTTTAGTTCGTA 60.057 47.826 0.00 0.00 0.00 3.43
2585 2674 2.289257 CCTCCGGTCCTTTTTAGTTCGT 60.289 50.000 0.00 0.00 0.00 3.85
2586 2675 2.028748 TCCTCCGGTCCTTTTTAGTTCG 60.029 50.000 0.00 0.00 0.00 3.95
2587 2676 3.690475 TCCTCCGGTCCTTTTTAGTTC 57.310 47.619 0.00 0.00 0.00 3.01
2588 2677 3.393609 ACTTCCTCCGGTCCTTTTTAGTT 59.606 43.478 0.00 0.00 0.00 2.24
2589 2678 2.977580 ACTTCCTCCGGTCCTTTTTAGT 59.022 45.455 0.00 0.00 0.00 2.24
2590 2679 3.697619 ACTTCCTCCGGTCCTTTTTAG 57.302 47.619 0.00 0.00 0.00 1.85
2591 2680 4.162651 AGTACTTCCTCCGGTCCTTTTTA 58.837 43.478 0.00 0.00 0.00 1.52
2592 2681 2.977580 AGTACTTCCTCCGGTCCTTTTT 59.022 45.455 0.00 0.00 0.00 1.94
2593 2682 2.617658 AGTACTTCCTCCGGTCCTTTT 58.382 47.619 0.00 0.00 0.00 2.27
2594 2683 2.322339 AGTACTTCCTCCGGTCCTTT 57.678 50.000 0.00 0.00 0.00 3.11
2595 2684 3.297736 CATAGTACTTCCTCCGGTCCTT 58.702 50.000 0.00 0.00 0.00 3.36
2596 2685 2.946785 CATAGTACTTCCTCCGGTCCT 58.053 52.381 0.00 0.00 0.00 3.85
2597 2686 1.340568 GCATAGTACTTCCTCCGGTCC 59.659 57.143 0.00 0.00 0.00 4.46
2598 2687 2.029623 TGCATAGTACTTCCTCCGGTC 58.970 52.381 0.00 0.00 0.00 4.79
2599 2688 2.154567 TGCATAGTACTTCCTCCGGT 57.845 50.000 0.00 0.00 0.00 5.28
2600 2689 3.572682 TGTATGCATAGTACTTCCTCCGG 59.427 47.826 6.67 0.00 0.00 5.14
2601 2690 4.848562 TGTATGCATAGTACTTCCTCCG 57.151 45.455 6.67 0.00 0.00 4.63
2602 2691 5.163343 TGGTTGTATGCATAGTACTTCCTCC 60.163 44.000 6.67 2.27 0.00 4.30
2603 2692 5.753921 GTGGTTGTATGCATAGTACTTCCTC 59.246 44.000 6.67 3.29 0.00 3.71
2604 2693 5.671493 GTGGTTGTATGCATAGTACTTCCT 58.329 41.667 6.67 0.00 0.00 3.36
2605 2694 4.506654 CGTGGTTGTATGCATAGTACTTCC 59.493 45.833 6.67 6.02 0.00 3.46
2606 2695 5.107133 ACGTGGTTGTATGCATAGTACTTC 58.893 41.667 6.67 5.25 0.00 3.01
2607 2696 5.080969 ACGTGGTTGTATGCATAGTACTT 57.919 39.130 6.67 0.00 0.00 2.24
2608 2697 4.158949 TGACGTGGTTGTATGCATAGTACT 59.841 41.667 6.67 0.00 0.00 2.73
2609 2698 4.426416 TGACGTGGTTGTATGCATAGTAC 58.574 43.478 6.67 8.03 0.00 2.73
2610 2699 4.722361 TGACGTGGTTGTATGCATAGTA 57.278 40.909 6.67 0.00 0.00 1.82
2611 2700 3.603158 TGACGTGGTTGTATGCATAGT 57.397 42.857 6.67 0.00 0.00 2.12
2612 2701 4.937696 TTTGACGTGGTTGTATGCATAG 57.062 40.909 6.67 0.00 0.00 2.23
2613 2702 5.690997 TTTTTGACGTGGTTGTATGCATA 57.309 34.783 1.16 1.16 0.00 3.14
2614 2703 4.576216 TTTTTGACGTGGTTGTATGCAT 57.424 36.364 3.79 3.79 0.00 3.96
2638 2727 9.204570 GCTCTTACATTTGTTTACAAGAGAGTA 57.795 33.333 18.49 4.01 38.41 2.59
2639 2728 7.715249 TGCTCTTACATTTGTTTACAAGAGAGT 59.285 33.333 18.49 4.72 38.41 3.24
2640 2729 8.087982 TGCTCTTACATTTGTTTACAAGAGAG 57.912 34.615 18.49 11.38 38.41 3.20
2641 2730 8.621532 ATGCTCTTACATTTGTTTACAAGAGA 57.378 30.769 18.49 8.89 38.41 3.10
2642 2731 9.683069 AAATGCTCTTACATTTGTTTACAAGAG 57.317 29.630 13.15 13.15 45.98 2.85
2676 2765 9.431887 AGTGATCTAAACGCTCTTATTTTTGTA 57.568 29.630 0.00 0.00 0.00 2.41
2677 2766 8.324163 AGTGATCTAAACGCTCTTATTTTTGT 57.676 30.769 0.00 0.00 0.00 2.83
2678 2767 9.690434 GTAGTGATCTAAACGCTCTTATTTTTG 57.310 33.333 0.00 0.00 0.00 2.44
2679 2768 9.654663 AGTAGTGATCTAAACGCTCTTATTTTT 57.345 29.630 0.00 0.00 0.00 1.94
2680 2769 9.654663 AAGTAGTGATCTAAACGCTCTTATTTT 57.345 29.630 0.00 0.00 0.00 1.82
2681 2770 9.654663 AAAGTAGTGATCTAAACGCTCTTATTT 57.345 29.630 0.00 0.00 0.00 1.40
2685 2774 9.088512 CATTAAAGTAGTGATCTAAACGCTCTT 57.911 33.333 0.00 0.00 0.00 2.85
2686 2775 8.467598 TCATTAAAGTAGTGATCTAAACGCTCT 58.532 33.333 0.00 0.00 0.00 4.09
2687 2776 8.630278 TCATTAAAGTAGTGATCTAAACGCTC 57.370 34.615 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.