Multiple sequence alignment - TraesCS5A01G195600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G195600 chr5A 100.000 5038 0 0 1 5038 398888488 398883451 0.000000e+00 9304.0
1 TraesCS5A01G195600 chr5A 77.637 237 38 13 4501 4731 3529809 3530036 4.090000e-26 130.0
2 TraesCS5A01G195600 chr5D 93.012 4164 174 56 939 5038 298939600 298943710 0.000000e+00 5969.0
3 TraesCS5A01G195600 chr5D 92.291 454 19 8 436 885 298938854 298939295 9.200000e-177 630.0
4 TraesCS5A01G195600 chr5D 77.717 184 30 9 4564 4743 535866709 535866885 8.920000e-18 102.0
5 TraesCS5A01G195600 chr5B 92.620 2317 105 26 2770 5038 339905691 339907989 0.000000e+00 3271.0
6 TraesCS5A01G195600 chr5B 91.003 1734 106 27 462 2173 339903308 339905013 0.000000e+00 2292.0
7 TraesCS5A01G195600 chr5B 90.996 522 39 6 2225 2740 339905179 339905698 0.000000e+00 697.0
8 TraesCS5A01G195600 chr5B 78.736 174 31 5 4576 4745 380983832 380983661 1.480000e-20 111.0
9 TraesCS5A01G195600 chr5B 95.082 61 3 0 2166 2226 339905038 339905098 4.150000e-16 97.1
10 TraesCS5A01G195600 chr4B 81.287 171 27 4 4561 4731 20229087 20229252 3.160000e-27 134.0
11 TraesCS5A01G195600 chr4B 80.000 170 31 3 4576 4745 649219722 649219556 6.850000e-24 122.0
12 TraesCS5A01G195600 chr4B 78.846 156 30 3 4576 4731 649220244 649220092 8.920000e-18 102.0
13 TraesCS5A01G195600 chr2A 75.175 286 59 9 4452 4731 715220947 715221226 1.900000e-24 124.0
14 TraesCS5A01G195600 chr4A 84.615 117 13 5 322 433 121480312 121480196 1.480000e-20 111.0
15 TraesCS5A01G195600 chr6D 83.333 126 13 7 321 440 434464402 434464279 5.330000e-20 110.0
16 TraesCS5A01G195600 chr1B 82.812 128 16 5 312 434 667683155 667683281 5.330000e-20 110.0
17 TraesCS5A01G195600 chr1B 81.452 124 20 3 314 434 458010620 458010743 1.150000e-16 99.0
18 TraesCS5A01G195600 chr2D 82.031 128 18 4 313 435 196004586 196004713 2.480000e-18 104.0
19 TraesCS5A01G195600 chr6A 81.250 128 18 6 312 434 167029660 167029786 1.150000e-16 99.0
20 TraesCS5A01G195600 chr3B 81.250 128 19 5 312 434 92344162 92344035 1.150000e-16 99.0
21 TraesCS5A01G195600 chr3B 82.353 119 16 2 312 426 263277865 263277982 1.150000e-16 99.0
22 TraesCS5A01G195600 chr3A 78.146 151 27 5 313 458 151638382 151638233 1.930000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G195600 chr5A 398883451 398888488 5037 True 9304.000 9304 100.00000 1 5038 1 chr5A.!!$R1 5037
1 TraesCS5A01G195600 chr5D 298938854 298943710 4856 False 3299.500 5969 92.65150 436 5038 2 chr5D.!!$F2 4602
2 TraesCS5A01G195600 chr5B 339903308 339907989 4681 False 1589.275 3271 92.42525 462 5038 4 chr5B.!!$F1 4576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
874 878 0.104725 ACCTCCATCCATCCTCCTCC 60.105 60.0 0.00 0.0 0.00 4.30 F
1174 1438 0.108804 CGCCATGGTACGTTCTGACT 60.109 55.0 14.67 0.0 0.00 3.41 F
1204 1468 0.387202 TTTCATGGCGTGGTTGTTGG 59.613 50.0 6.90 0.0 0.00 3.77 F
1297 1563 0.398522 TGTCAGTGGTGTGGGAGACT 60.399 55.0 0.00 0.0 0.00 3.24 F
3110 3554 0.374758 CAACGCGTGGAATCCATCAG 59.625 55.0 14.98 2.2 35.28 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 2015 0.947244 CGCTTTGCATACCCTCCATC 59.053 55.000 0.00 0.0 0.00 3.51 R
2560 2969 2.676632 TGTGAAGTACCGTGTGTGTT 57.323 45.000 0.00 0.0 0.00 3.32 R
3110 3554 3.873910 TCTTGCTAGCAGGTACAATTCC 58.126 45.455 24.36 0.0 0.00 3.01 R
3250 3694 6.911195 AGCTTTTCCTGCTCAAATGGAACAA 61.911 40.000 0.00 0.0 38.04 2.83 R
4556 5018 0.034089 GGGATGTAAAGTGCAGGCCT 60.034 55.000 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.872476 CACGTCGCTCACACAAAC 57.128 55.556 0.00 0.00 0.00 2.93
18 19 2.002899 CACGTCGCTCACACAAACA 58.997 52.632 0.00 0.00 0.00 2.83
19 20 0.581529 CACGTCGCTCACACAAACAT 59.418 50.000 0.00 0.00 0.00 2.71
20 21 0.859232 ACGTCGCTCACACAAACATC 59.141 50.000 0.00 0.00 0.00 3.06
21 22 1.139989 CGTCGCTCACACAAACATCT 58.860 50.000 0.00 0.00 0.00 2.90
22 23 2.287970 ACGTCGCTCACACAAACATCTA 60.288 45.455 0.00 0.00 0.00 1.98
23 24 2.923655 CGTCGCTCACACAAACATCTAT 59.076 45.455 0.00 0.00 0.00 1.98
24 25 3.000674 CGTCGCTCACACAAACATCTATC 60.001 47.826 0.00 0.00 0.00 2.08
25 26 3.000674 GTCGCTCACACAAACATCTATCG 60.001 47.826 0.00 0.00 0.00 2.92
26 27 3.119637 TCGCTCACACAAACATCTATCGA 60.120 43.478 0.00 0.00 0.00 3.59
27 28 3.612423 CGCTCACACAAACATCTATCGAA 59.388 43.478 0.00 0.00 0.00 3.71
28 29 4.259570 CGCTCACACAAACATCTATCGAAG 60.260 45.833 0.00 0.00 0.00 3.79
29 30 4.864806 GCTCACACAAACATCTATCGAAGA 59.135 41.667 0.00 0.00 45.75 2.87
30 31 5.521735 GCTCACACAAACATCTATCGAAGAT 59.478 40.000 0.00 0.00 46.36 2.40
31 32 6.036517 GCTCACACAAACATCTATCGAAGATT 59.963 38.462 7.20 0.00 42.62 2.40
32 33 7.294676 TCACACAAACATCTATCGAAGATTG 57.705 36.000 7.20 7.29 42.62 2.67
33 34 6.873605 TCACACAAACATCTATCGAAGATTGT 59.126 34.615 7.20 7.76 42.62 2.71
34 35 8.032451 TCACACAAACATCTATCGAAGATTGTA 58.968 33.333 7.20 0.00 42.62 2.41
35 36 8.323854 CACACAAACATCTATCGAAGATTGTAG 58.676 37.037 7.20 0.00 42.62 2.74
36 37 8.035394 ACACAAACATCTATCGAAGATTGTAGT 58.965 33.333 7.20 8.33 42.62 2.73
37 38 8.535592 CACAAACATCTATCGAAGATTGTAGTC 58.464 37.037 7.20 0.00 42.62 2.59
38 39 8.251026 ACAAACATCTATCGAAGATTGTAGTCA 58.749 33.333 7.20 0.00 42.62 3.41
39 40 9.254133 CAAACATCTATCGAAGATTGTAGTCAT 57.746 33.333 7.20 0.00 42.62 3.06
40 41 8.809159 AACATCTATCGAAGATTGTAGTCATG 57.191 34.615 7.20 0.00 42.62 3.07
41 42 7.374272 ACATCTATCGAAGATTGTAGTCATGG 58.626 38.462 7.20 0.00 42.62 3.66
42 43 7.231519 ACATCTATCGAAGATTGTAGTCATGGA 59.768 37.037 7.20 0.00 42.62 3.41
43 44 7.208225 TCTATCGAAGATTGTAGTCATGGAG 57.792 40.000 0.00 0.00 45.12 3.86
44 45 5.860941 ATCGAAGATTGTAGTCATGGAGT 57.139 39.130 0.00 0.00 45.12 3.85
45 46 5.661056 TCGAAGATTGTAGTCATGGAGTT 57.339 39.130 0.00 0.00 0.00 3.01
46 47 6.037786 TCGAAGATTGTAGTCATGGAGTTT 57.962 37.500 0.00 0.00 0.00 2.66
47 48 6.100004 TCGAAGATTGTAGTCATGGAGTTTC 58.900 40.000 0.00 0.00 0.00 2.78
48 49 6.071334 TCGAAGATTGTAGTCATGGAGTTTCT 60.071 38.462 0.00 0.00 0.00 2.52
49 50 7.122204 TCGAAGATTGTAGTCATGGAGTTTCTA 59.878 37.037 0.00 0.00 0.00 2.10
50 51 7.759886 CGAAGATTGTAGTCATGGAGTTTCTAA 59.240 37.037 0.00 0.00 0.00 2.10
51 52 9.436957 GAAGATTGTAGTCATGGAGTTTCTAAA 57.563 33.333 0.00 0.00 0.00 1.85
52 53 9.793259 AAGATTGTAGTCATGGAGTTTCTAAAA 57.207 29.630 0.00 0.00 0.00 1.52
53 54 9.965902 AGATTGTAGTCATGGAGTTTCTAAAAT 57.034 29.630 0.00 0.00 0.00 1.82
77 78 9.903682 AATTAACAAAGTCATCAGAAACATGAG 57.096 29.630 0.00 0.00 30.72 2.90
78 79 5.368256 ACAAAGTCATCAGAAACATGAGC 57.632 39.130 0.00 0.00 30.72 4.26
79 80 4.823442 ACAAAGTCATCAGAAACATGAGCA 59.177 37.500 0.00 0.00 30.72 4.26
80 81 5.300034 ACAAAGTCATCAGAAACATGAGCAA 59.700 36.000 0.00 0.00 30.72 3.91
81 82 6.183360 ACAAAGTCATCAGAAACATGAGCAAA 60.183 34.615 0.00 0.00 30.72 3.68
82 83 6.395426 AAGTCATCAGAAACATGAGCAAAA 57.605 33.333 0.00 0.00 30.72 2.44
83 84 6.585695 AGTCATCAGAAACATGAGCAAAAT 57.414 33.333 0.00 0.00 30.72 1.82
84 85 6.618811 AGTCATCAGAAACATGAGCAAAATC 58.381 36.000 0.00 0.00 30.72 2.17
85 86 6.208007 AGTCATCAGAAACATGAGCAAAATCA 59.792 34.615 0.00 0.00 30.72 2.57
86 87 6.864685 GTCATCAGAAACATGAGCAAAATCAA 59.135 34.615 0.00 0.00 30.72 2.57
87 88 7.544566 GTCATCAGAAACATGAGCAAAATCAAT 59.455 33.333 0.00 0.00 30.72 2.57
88 89 7.544217 TCATCAGAAACATGAGCAAAATCAATG 59.456 33.333 0.00 0.00 31.76 2.82
89 90 6.983984 TCAGAAACATGAGCAAAATCAATGA 58.016 32.000 0.00 0.00 31.76 2.57
90 91 7.608153 TCAGAAACATGAGCAAAATCAATGAT 58.392 30.769 0.00 0.00 31.76 2.45
91 92 7.544217 TCAGAAACATGAGCAAAATCAATGATG 59.456 33.333 0.00 0.00 31.76 3.07
92 93 6.312918 AGAAACATGAGCAAAATCAATGATGC 59.687 34.615 0.00 0.00 39.06 3.91
93 94 4.439057 ACATGAGCAAAATCAATGATGCC 58.561 39.130 0.00 0.00 39.59 4.40
94 95 4.081365 ACATGAGCAAAATCAATGATGCCA 60.081 37.500 0.00 0.00 39.59 4.92
95 96 3.852286 TGAGCAAAATCAATGATGCCAC 58.148 40.909 0.00 0.00 39.59 5.01
96 97 3.512329 TGAGCAAAATCAATGATGCCACT 59.488 39.130 0.00 0.00 39.59 4.00
97 98 4.705991 TGAGCAAAATCAATGATGCCACTA 59.294 37.500 0.00 0.00 39.59 2.74
98 99 5.185442 TGAGCAAAATCAATGATGCCACTAA 59.815 36.000 0.00 0.00 39.59 2.24
99 100 6.127281 TGAGCAAAATCAATGATGCCACTAAT 60.127 34.615 0.00 0.00 39.59 1.73
100 101 6.646267 AGCAAAATCAATGATGCCACTAATT 58.354 32.000 0.00 0.00 39.59 1.40
101 102 7.107542 AGCAAAATCAATGATGCCACTAATTT 58.892 30.769 0.00 0.00 39.59 1.82
102 103 7.279313 AGCAAAATCAATGATGCCACTAATTTC 59.721 33.333 0.00 0.00 39.59 2.17
103 104 7.279313 GCAAAATCAATGATGCCACTAATTTCT 59.721 33.333 0.00 0.00 32.73 2.52
104 105 9.158233 CAAAATCAATGATGCCACTAATTTCTT 57.842 29.630 0.00 0.00 0.00 2.52
105 106 9.729281 AAAATCAATGATGCCACTAATTTCTTT 57.271 25.926 0.00 0.00 0.00 2.52
106 107 9.729281 AAATCAATGATGCCACTAATTTCTTTT 57.271 25.926 0.00 0.00 0.00 2.27
107 108 8.712285 ATCAATGATGCCACTAATTTCTTTTG 57.288 30.769 0.00 0.00 0.00 2.44
108 109 7.669427 TCAATGATGCCACTAATTTCTTTTGT 58.331 30.769 0.00 0.00 0.00 2.83
109 110 7.814107 TCAATGATGCCACTAATTTCTTTTGTC 59.186 33.333 0.00 0.00 0.00 3.18
110 111 6.899393 TGATGCCACTAATTTCTTTTGTCT 57.101 33.333 0.00 0.00 0.00 3.41
111 112 7.994425 TGATGCCACTAATTTCTTTTGTCTA 57.006 32.000 0.00 0.00 0.00 2.59
112 113 8.044060 TGATGCCACTAATTTCTTTTGTCTAG 57.956 34.615 0.00 0.00 0.00 2.43
113 114 7.665559 TGATGCCACTAATTTCTTTTGTCTAGT 59.334 33.333 0.00 0.00 0.00 2.57
114 115 7.202016 TGCCACTAATTTCTTTTGTCTAGTG 57.798 36.000 0.00 0.00 37.21 2.74
115 116 6.995686 TGCCACTAATTTCTTTTGTCTAGTGA 59.004 34.615 8.28 0.00 38.90 3.41
116 117 7.665559 TGCCACTAATTTCTTTTGTCTAGTGAT 59.334 33.333 8.28 0.00 38.90 3.06
117 118 7.965107 GCCACTAATTTCTTTTGTCTAGTGATG 59.035 37.037 8.28 0.00 38.90 3.07
118 119 7.965107 CCACTAATTTCTTTTGTCTAGTGATGC 59.035 37.037 8.28 0.00 38.90 3.91
119 120 8.506437 CACTAATTTCTTTTGTCTAGTGATGCA 58.494 33.333 0.00 0.00 38.90 3.96
120 121 8.507249 ACTAATTTCTTTTGTCTAGTGATGCAC 58.493 33.333 0.00 0.00 34.10 4.57
121 122 6.882610 ATTTCTTTTGTCTAGTGATGCACA 57.117 33.333 0.00 0.00 36.74 4.57
122 123 6.691754 TTTCTTTTGTCTAGTGATGCACAA 57.308 33.333 0.00 0.00 36.74 3.33
123 124 6.882610 TTCTTTTGTCTAGTGATGCACAAT 57.117 33.333 0.00 0.00 36.74 2.71
124 125 7.977789 TTCTTTTGTCTAGTGATGCACAATA 57.022 32.000 0.00 0.00 36.74 1.90
125 126 7.364522 TCTTTTGTCTAGTGATGCACAATAC 57.635 36.000 0.00 0.00 36.74 1.89
126 127 7.161404 TCTTTTGTCTAGTGATGCACAATACT 58.839 34.615 0.00 0.00 36.74 2.12
127 128 8.311109 TCTTTTGTCTAGTGATGCACAATACTA 58.689 33.333 0.00 0.00 36.74 1.82
128 129 9.102757 CTTTTGTCTAGTGATGCACAATACTAT 57.897 33.333 0.00 0.00 36.74 2.12
129 130 9.448438 TTTTGTCTAGTGATGCACAATACTATT 57.552 29.630 0.00 0.00 36.74 1.73
130 131 9.448438 TTTGTCTAGTGATGCACAATACTATTT 57.552 29.630 0.00 0.00 36.74 1.40
131 132 8.648557 TGTCTAGTGATGCACAATACTATTTC 57.351 34.615 0.00 0.00 36.74 2.17
132 133 8.478066 TGTCTAGTGATGCACAATACTATTTCT 58.522 33.333 0.00 0.00 36.74 2.52
133 134 9.967346 GTCTAGTGATGCACAATACTATTTCTA 57.033 33.333 0.00 0.00 36.74 2.10
134 135 9.967346 TCTAGTGATGCACAATACTATTTCTAC 57.033 33.333 0.00 0.00 36.74 2.59
135 136 9.750125 CTAGTGATGCACAATACTATTTCTACA 57.250 33.333 0.00 0.00 36.74 2.74
137 138 9.049523 AGTGATGCACAATACTATTTCTACATG 57.950 33.333 0.00 0.00 36.74 3.21
138 139 7.800380 GTGATGCACAATACTATTTCTACATGC 59.200 37.037 0.00 0.00 34.08 4.06
139 140 7.498570 TGATGCACAATACTATTTCTACATGCA 59.501 33.333 0.00 0.00 42.88 3.96
140 141 7.250445 TGCACAATACTATTTCTACATGCAG 57.750 36.000 0.00 0.00 34.62 4.41
141 142 6.260714 TGCACAATACTATTTCTACATGCAGG 59.739 38.462 0.00 0.00 34.62 4.85
142 143 6.483307 GCACAATACTATTTCTACATGCAGGA 59.517 38.462 4.84 0.00 0.00 3.86
143 144 7.173907 GCACAATACTATTTCTACATGCAGGAT 59.826 37.037 4.84 0.00 0.00 3.24
144 145 9.710900 CACAATACTATTTCTACATGCAGGATA 57.289 33.333 4.84 0.00 0.00 2.59
145 146 9.935241 ACAATACTATTTCTACATGCAGGATAG 57.065 33.333 4.84 3.87 0.00 2.08
146 147 8.877779 CAATACTATTTCTACATGCAGGATAGC 58.122 37.037 4.84 0.00 0.00 2.97
154 155 1.078497 TGCAGGATAGCAACCCACG 60.078 57.895 0.00 0.00 42.46 4.94
155 156 2.472909 GCAGGATAGCAACCCACGC 61.473 63.158 0.00 0.00 0.00 5.34
156 157 1.221840 CAGGATAGCAACCCACGCT 59.778 57.895 0.00 0.00 43.62 5.07
157 158 0.811616 CAGGATAGCAACCCACGCTC 60.812 60.000 0.00 0.00 40.96 5.03
158 159 0.978146 AGGATAGCAACCCACGCTCT 60.978 55.000 0.00 0.00 40.96 4.09
159 160 0.530870 GGATAGCAACCCACGCTCTC 60.531 60.000 0.00 0.00 40.96 3.20
160 161 0.461961 GATAGCAACCCACGCTCTCT 59.538 55.000 0.00 0.00 40.96 3.10
161 162 0.461961 ATAGCAACCCACGCTCTCTC 59.538 55.000 0.00 0.00 40.96 3.20
162 163 0.612174 TAGCAACCCACGCTCTCTCT 60.612 55.000 0.00 0.00 40.96 3.10
163 164 1.446966 GCAACCCACGCTCTCTCTC 60.447 63.158 0.00 0.00 0.00 3.20
164 165 1.967535 CAACCCACGCTCTCTCTCA 59.032 57.895 0.00 0.00 0.00 3.27
165 166 0.534412 CAACCCACGCTCTCTCTCAT 59.466 55.000 0.00 0.00 0.00 2.90
166 167 1.751351 CAACCCACGCTCTCTCTCATA 59.249 52.381 0.00 0.00 0.00 2.15
167 168 1.686355 ACCCACGCTCTCTCTCATAG 58.314 55.000 0.00 0.00 0.00 2.23
168 169 1.064314 ACCCACGCTCTCTCTCATAGT 60.064 52.381 0.00 0.00 0.00 2.12
169 170 1.606668 CCCACGCTCTCTCTCATAGTC 59.393 57.143 0.00 0.00 0.00 2.59
170 171 2.571212 CCACGCTCTCTCTCATAGTCT 58.429 52.381 0.00 0.00 0.00 3.24
171 172 2.548057 CCACGCTCTCTCTCATAGTCTC 59.452 54.545 0.00 0.00 0.00 3.36
172 173 3.202097 CACGCTCTCTCTCATAGTCTCA 58.798 50.000 0.00 0.00 0.00 3.27
173 174 3.248363 CACGCTCTCTCTCATAGTCTCAG 59.752 52.174 0.00 0.00 0.00 3.35
174 175 2.224079 CGCTCTCTCTCATAGTCTCAGC 59.776 54.545 0.00 0.00 0.00 4.26
175 176 2.554032 GCTCTCTCTCATAGTCTCAGCC 59.446 54.545 0.00 0.00 0.00 4.85
176 177 3.819368 CTCTCTCTCATAGTCTCAGCCA 58.181 50.000 0.00 0.00 0.00 4.75
177 178 4.401022 CTCTCTCTCATAGTCTCAGCCAT 58.599 47.826 0.00 0.00 0.00 4.40
178 179 5.559770 CTCTCTCTCATAGTCTCAGCCATA 58.440 45.833 0.00 0.00 0.00 2.74
179 180 5.946486 TCTCTCTCATAGTCTCAGCCATAA 58.054 41.667 0.00 0.00 0.00 1.90
180 181 6.551085 TCTCTCTCATAGTCTCAGCCATAAT 58.449 40.000 0.00 0.00 0.00 1.28
181 182 7.694093 TCTCTCTCATAGTCTCAGCCATAATA 58.306 38.462 0.00 0.00 0.00 0.98
182 183 8.166726 TCTCTCTCATAGTCTCAGCCATAATAA 58.833 37.037 0.00 0.00 0.00 1.40
183 184 8.891985 TCTCTCATAGTCTCAGCCATAATAAT 57.108 34.615 0.00 0.00 0.00 1.28
184 185 9.319060 TCTCTCATAGTCTCAGCCATAATAATT 57.681 33.333 0.00 0.00 0.00 1.40
185 186 9.368674 CTCTCATAGTCTCAGCCATAATAATTG 57.631 37.037 0.00 0.00 0.00 2.32
186 187 8.874156 TCTCATAGTCTCAGCCATAATAATTGT 58.126 33.333 0.00 0.00 0.00 2.71
187 188 9.149225 CTCATAGTCTCAGCCATAATAATTGTC 57.851 37.037 0.00 0.00 0.00 3.18
188 189 8.097038 TCATAGTCTCAGCCATAATAATTGTCC 58.903 37.037 0.00 0.00 0.00 4.02
189 190 5.625150 AGTCTCAGCCATAATAATTGTCCC 58.375 41.667 0.00 0.00 0.00 4.46
190 191 5.370880 AGTCTCAGCCATAATAATTGTCCCT 59.629 40.000 0.00 0.00 0.00 4.20
191 192 5.471456 GTCTCAGCCATAATAATTGTCCCTG 59.529 44.000 0.00 0.00 0.00 4.45
192 193 5.369404 TCTCAGCCATAATAATTGTCCCTGA 59.631 40.000 0.00 0.00 0.00 3.86
193 194 6.044754 TCTCAGCCATAATAATTGTCCCTGAT 59.955 38.462 0.00 0.00 0.00 2.90
194 195 6.613699 TCAGCCATAATAATTGTCCCTGATT 58.386 36.000 0.00 0.00 0.00 2.57
195 196 7.068702 TCAGCCATAATAATTGTCCCTGATTT 58.931 34.615 0.00 0.00 0.00 2.17
196 197 8.224025 TCAGCCATAATAATTGTCCCTGATTTA 58.776 33.333 0.00 0.00 0.00 1.40
197 198 8.517878 CAGCCATAATAATTGTCCCTGATTTAG 58.482 37.037 0.00 0.00 0.00 1.85
198 199 8.227507 AGCCATAATAATTGTCCCTGATTTAGT 58.772 33.333 0.00 0.00 0.00 2.24
199 200 9.515226 GCCATAATAATTGTCCCTGATTTAGTA 57.485 33.333 0.00 0.00 0.00 1.82
230 231 6.816134 AAAAACACCCAAATGATAAATGCC 57.184 33.333 0.00 0.00 0.00 4.40
231 232 5.495926 AAACACCCAAATGATAAATGCCA 57.504 34.783 0.00 0.00 0.00 4.92
232 233 4.470334 ACACCCAAATGATAAATGCCAC 57.530 40.909 0.00 0.00 0.00 5.01
233 234 4.095946 ACACCCAAATGATAAATGCCACT 58.904 39.130 0.00 0.00 0.00 4.00
234 235 4.531732 ACACCCAAATGATAAATGCCACTT 59.468 37.500 0.00 0.00 0.00 3.16
235 236 4.871557 CACCCAAATGATAAATGCCACTTG 59.128 41.667 0.00 0.00 0.00 3.16
236 237 4.531732 ACCCAAATGATAAATGCCACTTGT 59.468 37.500 0.00 0.00 0.00 3.16
237 238 4.871557 CCCAAATGATAAATGCCACTTGTG 59.128 41.667 0.00 0.00 0.00 3.33
238 239 5.481105 CCAAATGATAAATGCCACTTGTGT 58.519 37.500 0.00 0.00 0.00 3.72
239 240 5.349270 CCAAATGATAAATGCCACTTGTGTG 59.651 40.000 0.00 0.00 43.45 3.82
240 241 5.981088 AATGATAAATGCCACTTGTGTGA 57.019 34.783 0.00 0.00 46.55 3.58
241 242 4.764679 TGATAAATGCCACTTGTGTGAC 57.235 40.909 0.00 0.00 46.55 3.67
242 243 4.140536 TGATAAATGCCACTTGTGTGACA 58.859 39.130 0.00 0.00 46.55 3.58
243 244 2.869233 AAATGCCACTTGTGTGACAC 57.131 45.000 9.14 9.14 46.55 3.67
244 245 2.057137 AATGCCACTTGTGTGACACT 57.943 45.000 17.47 0.00 46.55 3.55
245 246 2.057137 ATGCCACTTGTGTGACACTT 57.943 45.000 17.47 0.00 46.55 3.16
246 247 1.832883 TGCCACTTGTGTGACACTTT 58.167 45.000 17.47 0.00 46.55 2.66
247 248 1.472082 TGCCACTTGTGTGACACTTTG 59.528 47.619 17.47 10.45 46.55 2.77
248 249 1.742831 GCCACTTGTGTGACACTTTGA 59.257 47.619 17.47 0.00 46.55 2.69
249 250 2.477863 GCCACTTGTGTGACACTTTGAC 60.478 50.000 17.47 0.19 46.55 3.18
250 251 2.097466 CCACTTGTGTGACACTTTGACC 59.903 50.000 17.47 0.00 46.55 4.02
251 252 2.097466 CACTTGTGTGACACTTTGACCC 59.903 50.000 17.47 0.00 46.55 4.46
252 253 2.290641 ACTTGTGTGACACTTTGACCCA 60.291 45.455 17.47 0.00 35.11 4.51
253 254 2.727123 TGTGTGACACTTTGACCCAT 57.273 45.000 17.47 0.00 35.11 4.00
254 255 3.847671 TGTGTGACACTTTGACCCATA 57.152 42.857 17.47 0.00 35.11 2.74
255 256 3.472652 TGTGTGACACTTTGACCCATAC 58.527 45.455 17.47 0.00 35.11 2.39
256 257 2.812011 GTGTGACACTTTGACCCATACC 59.188 50.000 8.76 0.00 0.00 2.73
257 258 2.708861 TGTGACACTTTGACCCATACCT 59.291 45.455 7.20 0.00 0.00 3.08
258 259 3.137544 TGTGACACTTTGACCCATACCTT 59.862 43.478 7.20 0.00 0.00 3.50
259 260 4.142038 GTGACACTTTGACCCATACCTTT 58.858 43.478 0.00 0.00 0.00 3.11
260 261 4.583073 GTGACACTTTGACCCATACCTTTT 59.417 41.667 0.00 0.00 0.00 2.27
261 262 5.068591 GTGACACTTTGACCCATACCTTTTT 59.931 40.000 0.00 0.00 0.00 1.94
286 287 8.597662 TTACAACTAAAATAGCGATATGACCC 57.402 34.615 0.00 0.00 0.00 4.46
287 288 5.995897 ACAACTAAAATAGCGATATGACCCC 59.004 40.000 0.00 0.00 0.00 4.95
288 289 5.161943 ACTAAAATAGCGATATGACCCCC 57.838 43.478 0.00 0.00 0.00 5.40
314 315 3.078891 CCCCCTTCTCTCTTCCTTTTG 57.921 52.381 0.00 0.00 0.00 2.44
315 316 2.441410 CCCCTTCTCTCTTCCTTTTGC 58.559 52.381 0.00 0.00 0.00 3.68
316 317 2.441410 CCCTTCTCTCTTCCTTTTGCC 58.559 52.381 0.00 0.00 0.00 4.52
317 318 2.224867 CCCTTCTCTCTTCCTTTTGCCA 60.225 50.000 0.00 0.00 0.00 4.92
318 319 3.563043 CCCTTCTCTCTTCCTTTTGCCAT 60.563 47.826 0.00 0.00 0.00 4.40
319 320 4.085009 CCTTCTCTCTTCCTTTTGCCATT 58.915 43.478 0.00 0.00 0.00 3.16
320 321 4.157472 CCTTCTCTCTTCCTTTTGCCATTC 59.843 45.833 0.00 0.00 0.00 2.67
321 322 3.338249 TCTCTCTTCCTTTTGCCATTCG 58.662 45.455 0.00 0.00 0.00 3.34
322 323 3.007940 TCTCTCTTCCTTTTGCCATTCGA 59.992 43.478 0.00 0.00 0.00 3.71
323 324 3.750371 TCTCTTCCTTTTGCCATTCGAA 58.250 40.909 0.00 0.00 0.00 3.71
324 325 4.141287 TCTCTTCCTTTTGCCATTCGAAA 58.859 39.130 0.00 0.00 0.00 3.46
325 326 4.582656 TCTCTTCCTTTTGCCATTCGAAAA 59.417 37.500 0.00 0.00 0.00 2.29
326 327 4.870363 TCTTCCTTTTGCCATTCGAAAAG 58.130 39.130 0.00 0.00 38.41 2.27
327 328 4.582656 TCTTCCTTTTGCCATTCGAAAAGA 59.417 37.500 0.00 0.00 40.25 2.52
328 329 4.927978 TCCTTTTGCCATTCGAAAAGAA 57.072 36.364 0.00 0.00 40.25 2.52
329 330 4.870363 TCCTTTTGCCATTCGAAAAGAAG 58.130 39.130 0.00 1.47 42.92 2.85
330 331 4.340950 TCCTTTTGCCATTCGAAAAGAAGT 59.659 37.500 0.00 0.00 42.92 3.01
331 332 5.049828 CCTTTTGCCATTCGAAAAGAAGTT 58.950 37.500 0.00 0.00 42.92 2.66
332 333 5.050837 CCTTTTGCCATTCGAAAAGAAGTTG 60.051 40.000 0.00 0.00 42.92 3.16
333 334 4.647424 TTGCCATTCGAAAAGAAGTTGT 57.353 36.364 0.00 0.00 42.92 3.32
334 335 4.223320 TGCCATTCGAAAAGAAGTTGTC 57.777 40.909 0.00 0.00 42.92 3.18
335 336 3.629855 TGCCATTCGAAAAGAAGTTGTCA 59.370 39.130 0.00 0.00 42.92 3.58
336 337 4.278170 TGCCATTCGAAAAGAAGTTGTCAT 59.722 37.500 0.00 0.00 42.92 3.06
337 338 4.618489 GCCATTCGAAAAGAAGTTGTCATG 59.382 41.667 0.00 0.00 42.92 3.07
338 339 4.618489 CCATTCGAAAAGAAGTTGTCATGC 59.382 41.667 0.00 0.00 42.92 4.06
339 340 5.455392 CATTCGAAAAGAAGTTGTCATGCT 58.545 37.500 0.00 0.00 42.92 3.79
340 341 5.499139 TTCGAAAAGAAGTTGTCATGCTT 57.501 34.783 0.00 0.00 34.26 3.91
341 342 4.847633 TCGAAAAGAAGTTGTCATGCTTG 58.152 39.130 0.00 0.00 0.00 4.01
342 343 4.574421 TCGAAAAGAAGTTGTCATGCTTGA 59.426 37.500 0.00 0.00 0.00 3.02
343 344 6.947260 TTCGAAAAGAAGTTGTCATGCTTGAC 60.947 38.462 22.34 22.34 42.02 3.18
344 345 9.220630 TTCGAAAAGAAGTTGTCATGCTTGACA 62.221 37.037 26.52 26.52 45.33 3.58
405 406 5.799681 AAAAAGTTTGAAGTTGCCATGTG 57.200 34.783 0.00 0.00 0.00 3.21
406 407 4.470334 AAAGTTTGAAGTTGCCATGTGT 57.530 36.364 0.00 0.00 0.00 3.72
407 408 4.470334 AAGTTTGAAGTTGCCATGTGTT 57.530 36.364 0.00 0.00 0.00 3.32
408 409 4.045636 AGTTTGAAGTTGCCATGTGTTC 57.954 40.909 0.00 0.00 0.00 3.18
409 410 2.772568 TTGAAGTTGCCATGTGTTCG 57.227 45.000 0.00 0.00 0.00 3.95
410 411 1.674359 TGAAGTTGCCATGTGTTCGT 58.326 45.000 0.00 0.00 0.00 3.85
411 412 1.601903 TGAAGTTGCCATGTGTTCGTC 59.398 47.619 0.00 0.00 0.00 4.20
412 413 0.586319 AAGTTGCCATGTGTTCGTCG 59.414 50.000 0.00 0.00 0.00 5.12
413 414 1.440353 GTTGCCATGTGTTCGTCGC 60.440 57.895 0.00 0.00 0.00 5.19
414 415 2.612567 TTGCCATGTGTTCGTCGCC 61.613 57.895 0.00 0.00 0.00 5.54
415 416 4.147322 GCCATGTGTTCGTCGCCG 62.147 66.667 0.00 0.00 0.00 6.46
416 417 2.736995 CCATGTGTTCGTCGCCGT 60.737 61.111 0.00 0.00 35.01 5.68
417 418 2.469847 CATGTGTTCGTCGCCGTG 59.530 61.111 0.00 0.00 35.01 4.94
418 419 2.028484 ATGTGTTCGTCGCCGTGT 59.972 55.556 0.00 0.00 35.01 4.49
419 420 2.307309 ATGTGTTCGTCGCCGTGTG 61.307 57.895 0.00 0.00 35.01 3.82
420 421 2.656007 GTGTTCGTCGCCGTGTGA 60.656 61.111 0.00 0.00 35.01 3.58
421 422 2.656007 TGTTCGTCGCCGTGTGAC 60.656 61.111 7.32 7.32 39.38 3.67
422 423 2.656007 GTTCGTCGCCGTGTGACA 60.656 61.111 14.93 0.00 42.42 3.58
423 424 2.656007 TTCGTCGCCGTGTGACAC 60.656 61.111 5.47 5.47 42.42 3.67
424 425 3.128632 TTCGTCGCCGTGTGACACT 62.129 57.895 14.42 0.00 42.42 3.55
425 426 2.616786 TTCGTCGCCGTGTGACACTT 62.617 55.000 14.42 0.00 42.42 3.16
426 427 1.370778 CGTCGCCGTGTGACACTTA 60.371 57.895 14.42 0.00 42.42 2.24
427 428 0.731514 CGTCGCCGTGTGACACTTAT 60.732 55.000 14.42 0.00 42.42 1.73
428 429 0.713883 GTCGCCGTGTGACACTTATG 59.286 55.000 14.42 1.24 41.96 1.90
429 430 0.599060 TCGCCGTGTGACACTTATGA 59.401 50.000 14.42 3.65 31.34 2.15
430 431 0.992072 CGCCGTGTGACACTTATGAG 59.008 55.000 14.42 0.00 31.34 2.90
431 432 1.359848 GCCGTGTGACACTTATGAGG 58.640 55.000 14.42 7.39 31.34 3.86
432 433 2.007049 GCCGTGTGACACTTATGAGGG 61.007 57.143 14.42 6.67 31.34 4.30
433 434 1.275291 CCGTGTGACACTTATGAGGGT 59.725 52.381 14.42 0.00 43.90 4.34
434 435 2.289444 CCGTGTGACACTTATGAGGGTT 60.289 50.000 14.42 0.00 40.40 4.11
435 436 3.056393 CCGTGTGACACTTATGAGGGTTA 60.056 47.826 14.42 0.00 40.40 2.85
436 437 4.561938 CCGTGTGACACTTATGAGGGTTAA 60.562 45.833 14.42 0.00 40.40 2.01
437 438 4.992319 CGTGTGACACTTATGAGGGTTAAA 59.008 41.667 14.42 0.00 40.40 1.52
438 439 5.467399 CGTGTGACACTTATGAGGGTTAAAA 59.533 40.000 14.42 0.00 40.40 1.52
439 440 6.017770 CGTGTGACACTTATGAGGGTTAAAAA 60.018 38.462 14.42 0.00 40.40 1.94
528 532 1.001633 ACGAAAGCTCCGAGCCTTAAA 59.998 47.619 16.99 0.00 43.77 1.52
568 572 2.032528 CATGCCCCACACAGACGT 59.967 61.111 0.00 0.00 0.00 4.34
570 574 3.254024 ATGCCCCACACAGACGTCC 62.254 63.158 13.01 0.00 0.00 4.79
615 619 4.227134 CTCCCATCGGCCCAGTCG 62.227 72.222 0.00 0.00 0.00 4.18
645 649 3.310307 GTGCGCCAAACCCCCAAT 61.310 61.111 4.18 0.00 0.00 3.16
675 679 3.798511 GCCCCTTTCCTCCCCTCG 61.799 72.222 0.00 0.00 0.00 4.63
718 722 4.720902 CGCCTGCCATCCACACCA 62.721 66.667 0.00 0.00 0.00 4.17
721 725 1.228521 CCTGCCATCCACACCACAA 60.229 57.895 0.00 0.00 0.00 3.33
865 869 2.041922 CCTCCCGACCTCCATCCA 60.042 66.667 0.00 0.00 0.00 3.41
866 870 1.460305 CCTCCCGACCTCCATCCAT 60.460 63.158 0.00 0.00 0.00 3.41
867 871 1.476007 CCTCCCGACCTCCATCCATC 61.476 65.000 0.00 0.00 0.00 3.51
868 872 1.459539 TCCCGACCTCCATCCATCC 60.460 63.158 0.00 0.00 0.00 3.51
869 873 1.460305 CCCGACCTCCATCCATCCT 60.460 63.158 0.00 0.00 0.00 3.24
870 874 1.476007 CCCGACCTCCATCCATCCTC 61.476 65.000 0.00 0.00 0.00 3.71
871 875 1.476007 CCGACCTCCATCCATCCTCC 61.476 65.000 0.00 0.00 0.00 4.30
872 876 0.470833 CGACCTCCATCCATCCTCCT 60.471 60.000 0.00 0.00 0.00 3.69
873 877 1.347062 GACCTCCATCCATCCTCCTC 58.653 60.000 0.00 0.00 0.00 3.71
874 878 0.104725 ACCTCCATCCATCCTCCTCC 60.105 60.000 0.00 0.00 0.00 4.30
875 879 0.193069 CCTCCATCCATCCTCCTCCT 59.807 60.000 0.00 0.00 0.00 3.69
876 880 1.643310 CTCCATCCATCCTCCTCCTC 58.357 60.000 0.00 0.00 0.00 3.71
877 881 0.178950 TCCATCCATCCTCCTCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
878 882 1.670590 CATCCATCCTCCTCCTCGC 59.329 63.158 0.00 0.00 0.00 5.03
881 885 3.237741 CATCCTCCTCCTCGCCCC 61.238 72.222 0.00 0.00 0.00 5.80
918 922 4.862092 CCTCGCGCGCATCTCACT 62.862 66.667 32.61 0.00 0.00 3.41
936 961 4.203076 CGTCTAGGGTTCCGGCGG 62.203 72.222 22.51 22.51 0.00 6.13
1170 1434 1.079405 CCACGCCATGGTACGTTCT 60.079 57.895 14.67 0.00 44.46 3.01
1171 1435 1.358725 CCACGCCATGGTACGTTCTG 61.359 60.000 14.67 3.96 44.46 3.02
1172 1436 0.389296 CACGCCATGGTACGTTCTGA 60.389 55.000 14.67 0.00 41.32 3.27
1174 1438 0.108804 CGCCATGGTACGTTCTGACT 60.109 55.000 14.67 0.00 0.00 3.41
1175 1439 1.671850 CGCCATGGTACGTTCTGACTT 60.672 52.381 14.67 0.00 0.00 3.01
1176 1440 1.732259 GCCATGGTACGTTCTGACTTG 59.268 52.381 14.67 0.00 0.00 3.16
1177 1441 2.611971 GCCATGGTACGTTCTGACTTGA 60.612 50.000 14.67 0.00 0.00 3.02
1179 1443 3.306088 CCATGGTACGTTCTGACTTGACT 60.306 47.826 2.57 0.00 0.00 3.41
1180 1444 3.364889 TGGTACGTTCTGACTTGACTG 57.635 47.619 0.00 0.00 0.00 3.51
1204 1468 0.387202 TTTCATGGCGTGGTTGTTGG 59.613 50.000 6.90 0.00 0.00 3.77
1212 1476 2.456010 GCGTGGTTGTTGGTTAAACTG 58.544 47.619 0.00 0.00 39.70 3.16
1213 1477 2.097791 GCGTGGTTGTTGGTTAAACTGA 59.902 45.455 0.00 0.00 39.70 3.41
1214 1478 3.243267 GCGTGGTTGTTGGTTAAACTGAT 60.243 43.478 0.00 0.00 39.70 2.90
1242 1506 5.882000 TGACTGACGGATTGATTGATTGATT 59.118 36.000 0.00 0.00 0.00 2.57
1243 1507 6.127810 ACTGACGGATTGATTGATTGATTG 57.872 37.500 0.00 0.00 0.00 2.67
1244 1508 5.882000 ACTGACGGATTGATTGATTGATTGA 59.118 36.000 0.00 0.00 0.00 2.57
1245 1509 6.544931 ACTGACGGATTGATTGATTGATTGAT 59.455 34.615 0.00 0.00 0.00 2.57
1297 1563 0.398522 TGTCAGTGGTGTGGGAGACT 60.399 55.000 0.00 0.00 0.00 3.24
1326 1592 1.161843 TTCGTTGAATTCGCCCCTTC 58.838 50.000 0.04 0.00 0.00 3.46
1332 1601 0.811281 GAATTCGCCCCTTCTTGTGG 59.189 55.000 0.00 0.00 0.00 4.17
1338 1607 0.961753 GCCCCTTCTTGTGGTGAAAG 59.038 55.000 0.00 0.00 0.00 2.62
1367 1636 0.819582 TTAGGGGCGGTTAAGACTCG 59.180 55.000 0.00 0.00 0.00 4.18
1393 1662 4.744137 CGATGAGGAATTTGAGTGCTAGAG 59.256 45.833 0.00 0.00 0.00 2.43
1415 1684 2.231235 CCTTATCCTTTGTGGTTGTGGC 59.769 50.000 0.00 0.00 37.07 5.01
1465 1734 3.801997 AGGGGCAAGCGAGATGGG 61.802 66.667 0.00 0.00 0.00 4.00
1478 1747 2.044946 ATGGGCCTTTCGCTGGAC 60.045 61.111 4.53 0.00 37.74 4.02
1577 1850 4.154195 ACGTGTGGCAATTCTGAGTATTTC 59.846 41.667 0.00 0.00 0.00 2.17
1641 1914 1.066136 CAGTGTGTGCTCTGACATCG 58.934 55.000 0.00 0.00 38.19 3.84
1734 2008 6.545298 ACTCTGATTAGAATTGGCCATCTTTC 59.455 38.462 14.00 13.51 31.21 2.62
1736 2010 7.121382 TCTGATTAGAATTGGCCATCTTTCTT 58.879 34.615 23.37 12.10 31.29 2.52
1842 2116 7.936847 TCATCCTTTTCAGCTTTACTTCAACTA 59.063 33.333 0.00 0.00 0.00 2.24
1933 2208 6.547141 CCTTGGCATTGGAATCAGTATCTTAA 59.453 38.462 1.31 0.00 0.00 1.85
1937 2212 7.067372 TGGCATTGGAATCAGTATCTTAAGTTG 59.933 37.037 1.63 0.00 0.00 3.16
2010 2295 5.176592 CCCTCTTCCTAGTTTTAGTTTCCG 58.823 45.833 0.00 0.00 0.00 4.30
2033 2318 2.494471 AGTACTACAATGGCACGCAGTA 59.506 45.455 0.00 0.00 41.61 2.74
2037 2322 1.442769 ACAATGGCACGCAGTAGAAG 58.557 50.000 0.00 0.00 41.61 2.85
2098 2383 7.011576 TGCTCAACTCATTAAACGAAACACTAA 59.988 33.333 0.00 0.00 0.00 2.24
2100 2385 9.370126 CTCAACTCATTAAACGAAACACTAAAG 57.630 33.333 0.00 0.00 0.00 1.85
2227 2629 2.693069 CAGAGTGGTTGAACAGCTAGG 58.307 52.381 0.00 0.00 0.00 3.02
2275 2677 8.491331 TTCTTTATTTGTCATGATCATCGTCA 57.509 30.769 4.86 2.71 0.00 4.35
2292 2694 3.989817 TCGTCATGTTGTTCTGATGACTG 59.010 43.478 0.00 0.00 42.52 3.51
2357 2759 4.715534 TGTGGGATTTGACCAGAGTTTA 57.284 40.909 0.00 0.00 39.00 2.01
2358 2760 5.055265 TGTGGGATTTGACCAGAGTTTAA 57.945 39.130 0.00 0.00 39.00 1.52
2386 2788 6.373216 ACCAACGCTTAAAACTAATCATAGCA 59.627 34.615 0.00 0.00 31.96 3.49
2409 2811 6.418819 GCATTGATGTATGGTATTGCAACTTC 59.581 38.462 0.00 0.00 0.00 3.01
2588 2998 2.151202 CGGTACTTCACAATGTTGGCT 58.849 47.619 0.00 0.00 0.00 4.75
2604 3014 3.921119 TGGCTGCAAAAGTGTCAATAG 57.079 42.857 0.50 0.00 0.00 1.73
2625 3035 8.919661 CAATAGAAGGAACAGAAGAAAATTTGC 58.080 33.333 0.00 0.00 0.00 3.68
2626 3036 5.523369 AGAAGGAACAGAAGAAAATTTGCG 58.477 37.500 0.00 0.00 0.00 4.85
2678 3088 3.758172 GCCGTGTTGGGTCATTGT 58.242 55.556 0.00 0.00 38.63 2.71
2746 3157 9.871238 TGATGAGGAATCAGTAAAGTACTAAAC 57.129 33.333 0.00 0.00 40.50 2.01
2763 3174 9.097946 AGTACTAAACTTTGTAGGAGTTGGTAT 57.902 33.333 0.00 0.00 37.41 2.73
2807 3218 6.752351 CGAGTATACAGGGGATTAATTCATCG 59.248 42.308 5.50 0.00 0.00 3.84
3110 3554 0.374758 CAACGCGTGGAATCCATCAG 59.625 55.000 14.98 2.20 35.28 2.90
3131 3575 3.519510 AGGAATTGTACCTGCTAGCAAGA 59.480 43.478 20.14 4.57 36.30 3.02
3220 3664 7.255416 GGCAGAAATCTGTTCTTTCTTCTCTTT 60.255 37.037 11.77 0.00 45.45 2.52
3250 3694 7.972623 TTTCACGACGTTTTTCATTATTGTT 57.027 28.000 0.00 0.00 0.00 2.83
3317 3761 3.325716 AGCATGAAAATGGTTTGAGGCTT 59.674 39.130 0.00 0.00 43.91 4.35
3468 3921 5.752036 CCATGATGGTCTGACTGGTATAT 57.248 43.478 2.54 0.00 31.35 0.86
3524 3977 6.068473 TGATGCATAATGAACAAGATGAGC 57.932 37.500 0.00 0.00 0.00 4.26
3538 3991 5.189736 ACAAGATGAGCTTACCATCCTTACA 59.810 40.000 9.61 0.00 40.85 2.41
3543 3996 4.041075 TGAGCTTACCATCCTTACACACAA 59.959 41.667 0.00 0.00 0.00 3.33
3600 4053 1.834263 CCATACCTCTAGCCATAGCCC 59.166 57.143 0.00 0.00 41.25 5.19
3635 4088 6.068670 ACTAGTTGCACCACTTTTATCCTTT 58.931 36.000 0.00 0.00 0.00 3.11
4134 4595 1.266989 CAGTGAAAGAAGAAACCGGCC 59.733 52.381 0.00 0.00 0.00 6.13
4361 4823 3.270877 ACTGTTGGTCTGTTGTCAAGTC 58.729 45.455 0.00 0.00 0.00 3.01
4376 4838 4.037446 TGTCAAGTCTTTGGTGGCAAATAC 59.963 41.667 0.00 0.00 34.97 1.89
4432 4894 1.273606 CAGGCCTGGAGACCATATACG 59.726 57.143 26.14 0.00 30.82 3.06
4498 4960 4.166725 TGGACCATTAGATGAGAAGGCAAT 59.833 41.667 0.00 0.00 0.00 3.56
4509 4971 3.511146 TGAGAAGGCAATGGGTCAAATTC 59.489 43.478 0.00 0.00 0.00 2.17
4595 5057 6.179906 TCCCACTCTCTCATCAATAAATCC 57.820 41.667 0.00 0.00 0.00 3.01
4600 5062 6.199908 CACTCTCTCATCAATAAATCCGTGTC 59.800 42.308 0.00 0.00 0.00 3.67
4603 5065 6.980978 TCTCTCATCAATAAATCCGTGTCTTC 59.019 38.462 0.00 0.00 0.00 2.87
4637 5105 3.627123 TCGAACACAAAGATGGCCATATG 59.373 43.478 20.84 19.72 0.00 1.78
4698 5166 2.287009 GGCAACTTTTGTCTTGACGAGG 60.287 50.000 0.00 0.00 31.13 4.63
4788 5259 3.109151 ACCAAATGCATGTGGGATTGAT 58.891 40.909 34.35 13.95 37.63 2.57
4845 5322 9.736023 AGAACTTACAAGACAATTAAAAGCTTG 57.264 29.630 0.00 0.00 41.15 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.581529 ATGTTTGTGTGAGCGACGTG 59.418 50.000 0.00 0.00 0.00 4.49
2 3 1.139989 AGATGTTTGTGTGAGCGACG 58.860 50.000 0.00 0.00 0.00 5.12
3 4 3.000674 CGATAGATGTTTGTGTGAGCGAC 60.001 47.826 0.00 0.00 39.76 5.19
4 5 3.119637 TCGATAGATGTTTGTGTGAGCGA 60.120 43.478 0.00 0.00 42.67 4.93
5 6 3.179048 TCGATAGATGTTTGTGTGAGCG 58.821 45.455 0.00 0.00 42.67 5.03
20 21 6.976088 ACTCCATGACTACAATCTTCGATAG 58.024 40.000 0.00 0.00 0.00 2.08
21 22 6.961360 ACTCCATGACTACAATCTTCGATA 57.039 37.500 0.00 0.00 0.00 2.92
22 23 5.860941 ACTCCATGACTACAATCTTCGAT 57.139 39.130 0.00 0.00 0.00 3.59
23 24 5.661056 AACTCCATGACTACAATCTTCGA 57.339 39.130 0.00 0.00 0.00 3.71
24 25 6.102663 AGAAACTCCATGACTACAATCTTCG 58.897 40.000 0.00 0.00 0.00 3.79
25 26 9.436957 TTTAGAAACTCCATGACTACAATCTTC 57.563 33.333 0.00 0.00 0.00 2.87
26 27 9.793259 TTTTAGAAACTCCATGACTACAATCTT 57.207 29.630 0.00 0.00 0.00 2.40
27 28 9.965902 ATTTTAGAAACTCCATGACTACAATCT 57.034 29.630 0.00 0.00 0.00 2.40
51 52 9.903682 CTCATGTTTCTGATGACTTTGTTAATT 57.096 29.630 0.00 0.00 0.00 1.40
52 53 8.025445 GCTCATGTTTCTGATGACTTTGTTAAT 58.975 33.333 0.00 0.00 0.00 1.40
53 54 7.013178 TGCTCATGTTTCTGATGACTTTGTTAA 59.987 33.333 0.00 0.00 0.00 2.01
54 55 6.486320 TGCTCATGTTTCTGATGACTTTGTTA 59.514 34.615 0.00 0.00 0.00 2.41
55 56 5.300034 TGCTCATGTTTCTGATGACTTTGTT 59.700 36.000 0.00 0.00 0.00 2.83
56 57 4.823442 TGCTCATGTTTCTGATGACTTTGT 59.177 37.500 0.00 0.00 0.00 2.83
57 58 5.366829 TGCTCATGTTTCTGATGACTTTG 57.633 39.130 0.00 0.00 0.00 2.77
58 59 6.395426 TTTGCTCATGTTTCTGATGACTTT 57.605 33.333 0.00 0.00 0.00 2.66
59 60 6.395426 TTTTGCTCATGTTTCTGATGACTT 57.605 33.333 0.00 0.00 0.00 3.01
60 61 6.208007 TGATTTTGCTCATGTTTCTGATGACT 59.792 34.615 0.00 0.00 0.00 3.41
61 62 6.384224 TGATTTTGCTCATGTTTCTGATGAC 58.616 36.000 0.00 0.00 0.00 3.06
62 63 6.578163 TGATTTTGCTCATGTTTCTGATGA 57.422 33.333 0.00 0.00 0.00 2.92
63 64 7.544217 TCATTGATTTTGCTCATGTTTCTGATG 59.456 33.333 0.00 0.00 0.00 3.07
64 65 7.608153 TCATTGATTTTGCTCATGTTTCTGAT 58.392 30.769 0.00 0.00 0.00 2.90
65 66 6.983984 TCATTGATTTTGCTCATGTTTCTGA 58.016 32.000 0.00 0.00 0.00 3.27
66 67 7.674008 GCATCATTGATTTTGCTCATGTTTCTG 60.674 37.037 0.00 0.00 32.41 3.02
67 68 6.312918 GCATCATTGATTTTGCTCATGTTTCT 59.687 34.615 0.00 0.00 32.41 2.52
68 69 6.456449 GGCATCATTGATTTTGCTCATGTTTC 60.456 38.462 9.83 0.00 35.46 2.78
69 70 5.353123 GGCATCATTGATTTTGCTCATGTTT 59.647 36.000 9.83 0.00 35.46 2.83
70 71 4.873827 GGCATCATTGATTTTGCTCATGTT 59.126 37.500 9.83 0.00 35.46 2.71
71 72 4.081365 TGGCATCATTGATTTTGCTCATGT 60.081 37.500 9.83 0.00 35.46 3.21
72 73 4.270084 GTGGCATCATTGATTTTGCTCATG 59.730 41.667 9.83 0.00 35.46 3.07
73 74 4.161565 AGTGGCATCATTGATTTTGCTCAT 59.838 37.500 9.83 0.00 35.46 2.90
74 75 3.512329 AGTGGCATCATTGATTTTGCTCA 59.488 39.130 9.83 4.88 35.46 4.26
75 76 4.119442 AGTGGCATCATTGATTTTGCTC 57.881 40.909 9.83 5.14 35.46 4.26
76 77 5.664294 TTAGTGGCATCATTGATTTTGCT 57.336 34.783 9.83 4.10 35.46 3.91
77 78 6.913873 AATTAGTGGCATCATTGATTTTGC 57.086 33.333 0.00 0.00 0.00 3.68
78 79 8.712285 AGAAATTAGTGGCATCATTGATTTTG 57.288 30.769 0.00 0.00 32.08 2.44
79 80 9.729281 AAAGAAATTAGTGGCATCATTGATTTT 57.271 25.926 0.00 0.00 32.08 1.82
80 81 9.729281 AAAAGAAATTAGTGGCATCATTGATTT 57.271 25.926 0.00 0.00 33.67 2.17
81 82 9.158233 CAAAAGAAATTAGTGGCATCATTGATT 57.842 29.630 0.00 0.00 0.00 2.57
82 83 8.316214 ACAAAAGAAATTAGTGGCATCATTGAT 58.684 29.630 0.00 0.00 0.00 2.57
83 84 7.669427 ACAAAAGAAATTAGTGGCATCATTGA 58.331 30.769 0.00 0.00 0.00 2.57
84 85 7.816031 AGACAAAAGAAATTAGTGGCATCATTG 59.184 33.333 0.00 0.00 0.00 2.82
85 86 7.899973 AGACAAAAGAAATTAGTGGCATCATT 58.100 30.769 0.00 0.00 0.00 2.57
86 87 7.472334 AGACAAAAGAAATTAGTGGCATCAT 57.528 32.000 0.00 0.00 0.00 2.45
87 88 6.899393 AGACAAAAGAAATTAGTGGCATCA 57.101 33.333 0.00 0.00 0.00 3.07
88 89 7.965107 CACTAGACAAAAGAAATTAGTGGCATC 59.035 37.037 0.00 0.00 36.17 3.91
89 90 7.665559 TCACTAGACAAAAGAAATTAGTGGCAT 59.334 33.333 0.00 0.00 38.82 4.40
90 91 6.995686 TCACTAGACAAAAGAAATTAGTGGCA 59.004 34.615 0.00 0.00 38.82 4.92
91 92 7.435068 TCACTAGACAAAAGAAATTAGTGGC 57.565 36.000 0.00 0.00 38.82 5.01
92 93 7.965107 GCATCACTAGACAAAAGAAATTAGTGG 59.035 37.037 0.00 0.00 38.82 4.00
93 94 8.506437 TGCATCACTAGACAAAAGAAATTAGTG 58.494 33.333 0.00 3.69 39.36 2.74
94 95 8.507249 GTGCATCACTAGACAAAAGAAATTAGT 58.493 33.333 0.00 0.00 0.00 2.24
95 96 8.506437 TGTGCATCACTAGACAAAAGAAATTAG 58.494 33.333 0.00 0.00 35.11 1.73
96 97 8.389779 TGTGCATCACTAGACAAAAGAAATTA 57.610 30.769 0.00 0.00 35.11 1.40
97 98 7.275888 TGTGCATCACTAGACAAAAGAAATT 57.724 32.000 0.00 0.00 35.11 1.82
98 99 6.882610 TGTGCATCACTAGACAAAAGAAAT 57.117 33.333 0.00 0.00 35.11 2.17
99 100 6.691754 TTGTGCATCACTAGACAAAAGAAA 57.308 33.333 0.00 0.00 35.11 2.52
100 101 6.882610 ATTGTGCATCACTAGACAAAAGAA 57.117 33.333 0.00 0.00 35.11 2.52
101 102 7.161404 AGTATTGTGCATCACTAGACAAAAGA 58.839 34.615 0.00 0.00 34.79 2.52
102 103 7.369803 AGTATTGTGCATCACTAGACAAAAG 57.630 36.000 0.00 0.00 34.79 2.27
103 104 9.448438 AATAGTATTGTGCATCACTAGACAAAA 57.552 29.630 0.00 0.00 34.79 2.44
104 105 9.448438 AAATAGTATTGTGCATCACTAGACAAA 57.552 29.630 0.00 0.00 34.79 2.83
105 106 9.098355 GAAATAGTATTGTGCATCACTAGACAA 57.902 33.333 0.00 0.00 34.79 3.18
106 107 8.478066 AGAAATAGTATTGTGCATCACTAGACA 58.522 33.333 0.00 0.00 34.79 3.41
107 108 8.879342 AGAAATAGTATTGTGCATCACTAGAC 57.121 34.615 0.00 0.00 33.17 2.59
108 109 9.967346 GTAGAAATAGTATTGTGCATCACTAGA 57.033 33.333 0.00 0.00 35.11 2.43
109 110 9.750125 TGTAGAAATAGTATTGTGCATCACTAG 57.250 33.333 0.00 0.00 35.11 2.57
111 112 9.049523 CATGTAGAAATAGTATTGTGCATCACT 57.950 33.333 0.00 0.00 35.11 3.41
112 113 7.800380 GCATGTAGAAATAGTATTGTGCATCAC 59.200 37.037 0.00 0.00 28.81 3.06
113 114 7.498570 TGCATGTAGAAATAGTATTGTGCATCA 59.501 33.333 0.00 2.07 34.37 3.07
114 115 7.864686 TGCATGTAGAAATAGTATTGTGCATC 58.135 34.615 0.00 0.00 34.37 3.91
115 116 7.040892 CCTGCATGTAGAAATAGTATTGTGCAT 60.041 37.037 12.93 0.44 38.08 3.96
116 117 6.260714 CCTGCATGTAGAAATAGTATTGTGCA 59.739 38.462 12.93 6.25 37.33 4.57
117 118 6.483307 TCCTGCATGTAGAAATAGTATTGTGC 59.517 38.462 12.93 2.38 0.00 4.57
118 119 8.613060 ATCCTGCATGTAGAAATAGTATTGTG 57.387 34.615 12.93 0.00 0.00 3.33
119 120 9.935241 CTATCCTGCATGTAGAAATAGTATTGT 57.065 33.333 12.93 0.00 0.00 2.71
120 121 8.877779 GCTATCCTGCATGTAGAAATAGTATTG 58.122 37.037 22.17 8.62 0.00 1.90
121 122 8.597167 TGCTATCCTGCATGTAGAAATAGTATT 58.403 33.333 22.17 0.00 38.12 1.89
122 123 8.138928 TGCTATCCTGCATGTAGAAATAGTAT 57.861 34.615 22.17 7.22 38.12 2.12
123 124 7.539034 TGCTATCCTGCATGTAGAAATAGTA 57.461 36.000 22.17 18.55 38.12 1.82
124 125 6.425210 TGCTATCCTGCATGTAGAAATAGT 57.575 37.500 22.17 5.51 38.12 2.12
125 126 6.148480 GGTTGCTATCCTGCATGTAGAAATAG 59.852 42.308 12.93 17.25 42.96 1.73
126 127 5.997746 GGTTGCTATCCTGCATGTAGAAATA 59.002 40.000 12.93 8.65 42.96 1.40
127 128 4.823989 GGTTGCTATCCTGCATGTAGAAAT 59.176 41.667 12.93 7.96 42.96 2.17
128 129 4.199310 GGTTGCTATCCTGCATGTAGAAA 58.801 43.478 12.93 0.24 42.96 2.52
129 130 3.433598 GGGTTGCTATCCTGCATGTAGAA 60.434 47.826 12.93 0.00 42.96 2.10
130 131 2.104792 GGGTTGCTATCCTGCATGTAGA 59.895 50.000 12.93 0.00 42.96 2.59
131 132 2.158769 TGGGTTGCTATCCTGCATGTAG 60.159 50.000 3.45 3.45 42.96 2.74
132 133 1.843206 TGGGTTGCTATCCTGCATGTA 59.157 47.619 0.00 0.00 42.96 2.29
133 134 0.625316 TGGGTTGCTATCCTGCATGT 59.375 50.000 0.00 0.00 42.96 3.21
134 135 1.027357 GTGGGTTGCTATCCTGCATG 58.973 55.000 0.00 0.00 42.96 4.06
135 136 0.464373 CGTGGGTTGCTATCCTGCAT 60.464 55.000 0.00 0.00 42.96 3.96
136 137 1.078497 CGTGGGTTGCTATCCTGCA 60.078 57.895 0.00 0.00 41.65 4.41
137 138 2.472909 GCGTGGGTTGCTATCCTGC 61.473 63.158 0.00 0.00 0.00 4.85
138 139 0.811616 GAGCGTGGGTTGCTATCCTG 60.812 60.000 0.00 0.00 44.18 3.86
139 140 0.978146 AGAGCGTGGGTTGCTATCCT 60.978 55.000 0.00 0.00 44.18 3.24
140 141 0.530870 GAGAGCGTGGGTTGCTATCC 60.531 60.000 0.00 0.00 43.15 2.59
141 142 2.979130 GAGAGCGTGGGTTGCTATC 58.021 57.895 0.00 0.00 44.18 2.08
142 143 0.461961 GAGAGAGCGTGGGTTGCTAT 59.538 55.000 0.00 0.00 44.18 2.97
143 144 0.612174 AGAGAGAGCGTGGGTTGCTA 60.612 55.000 0.00 0.00 44.18 3.49
145 146 1.446966 GAGAGAGAGCGTGGGTTGC 60.447 63.158 0.00 0.00 0.00 4.17
146 147 0.534412 ATGAGAGAGAGCGTGGGTTG 59.466 55.000 0.00 0.00 0.00 3.77
147 148 2.028130 CTATGAGAGAGAGCGTGGGTT 58.972 52.381 0.00 0.00 0.00 4.11
148 149 1.064314 ACTATGAGAGAGAGCGTGGGT 60.064 52.381 0.00 0.00 0.00 4.51
149 150 1.606668 GACTATGAGAGAGAGCGTGGG 59.393 57.143 0.00 0.00 0.00 4.61
150 151 2.548057 GAGACTATGAGAGAGAGCGTGG 59.452 54.545 0.00 0.00 0.00 4.94
151 152 3.202097 TGAGACTATGAGAGAGAGCGTG 58.798 50.000 0.00 0.00 0.00 5.34
152 153 3.466836 CTGAGACTATGAGAGAGAGCGT 58.533 50.000 0.00 0.00 0.00 5.07
153 154 2.224079 GCTGAGACTATGAGAGAGAGCG 59.776 54.545 0.00 0.00 0.00 5.03
154 155 2.554032 GGCTGAGACTATGAGAGAGAGC 59.446 54.545 0.00 0.00 0.00 4.09
155 156 3.819368 TGGCTGAGACTATGAGAGAGAG 58.181 50.000 0.00 0.00 0.00 3.20
156 157 3.941704 TGGCTGAGACTATGAGAGAGA 57.058 47.619 0.00 0.00 0.00 3.10
157 158 6.839124 ATTATGGCTGAGACTATGAGAGAG 57.161 41.667 0.00 0.00 0.00 3.20
158 159 8.891985 ATTATTATGGCTGAGACTATGAGAGA 57.108 34.615 0.00 0.00 0.00 3.10
159 160 9.368674 CAATTATTATGGCTGAGACTATGAGAG 57.631 37.037 0.00 0.00 0.00 3.20
160 161 8.874156 ACAATTATTATGGCTGAGACTATGAGA 58.126 33.333 0.00 0.00 0.00 3.27
161 162 9.149225 GACAATTATTATGGCTGAGACTATGAG 57.851 37.037 0.00 0.00 0.00 2.90
162 163 8.097038 GGACAATTATTATGGCTGAGACTATGA 58.903 37.037 0.00 0.00 0.00 2.15
163 164 7.335422 GGGACAATTATTATGGCTGAGACTATG 59.665 40.741 0.00 0.00 0.00 2.23
164 165 7.238514 AGGGACAATTATTATGGCTGAGACTAT 59.761 37.037 0.00 0.00 0.00 2.12
165 166 6.558775 AGGGACAATTATTATGGCTGAGACTA 59.441 38.462 0.00 0.00 0.00 2.59
166 167 5.370880 AGGGACAATTATTATGGCTGAGACT 59.629 40.000 0.00 0.00 0.00 3.24
167 168 5.471456 CAGGGACAATTATTATGGCTGAGAC 59.529 44.000 0.00 0.00 0.00 3.36
168 169 5.369404 TCAGGGACAATTATTATGGCTGAGA 59.631 40.000 0.00 0.00 0.00 3.27
169 170 5.624159 TCAGGGACAATTATTATGGCTGAG 58.376 41.667 0.00 0.00 0.00 3.35
170 171 5.645056 TCAGGGACAATTATTATGGCTGA 57.355 39.130 0.00 0.00 0.00 4.26
171 172 6.906157 AATCAGGGACAATTATTATGGCTG 57.094 37.500 0.00 0.00 0.00 4.85
172 173 8.227507 ACTAAATCAGGGACAATTATTATGGCT 58.772 33.333 0.00 0.00 0.00 4.75
173 174 8.409358 ACTAAATCAGGGACAATTATTATGGC 57.591 34.615 0.00 0.00 0.00 4.40
207 208 6.206438 GTGGCATTTATCATTTGGGTGTTTTT 59.794 34.615 0.00 0.00 0.00 1.94
208 209 5.704978 GTGGCATTTATCATTTGGGTGTTTT 59.295 36.000 0.00 0.00 0.00 2.43
209 210 5.012975 AGTGGCATTTATCATTTGGGTGTTT 59.987 36.000 0.00 0.00 0.00 2.83
210 211 4.531732 AGTGGCATTTATCATTTGGGTGTT 59.468 37.500 0.00 0.00 0.00 3.32
211 212 4.095946 AGTGGCATTTATCATTTGGGTGT 58.904 39.130 0.00 0.00 0.00 4.16
212 213 4.741321 AGTGGCATTTATCATTTGGGTG 57.259 40.909 0.00 0.00 0.00 4.61
213 214 4.531732 ACAAGTGGCATTTATCATTTGGGT 59.468 37.500 0.00 0.00 35.71 4.51
214 215 4.871557 CACAAGTGGCATTTATCATTTGGG 59.128 41.667 0.00 0.00 35.71 4.12
215 216 5.349270 CACACAAGTGGCATTTATCATTTGG 59.651 40.000 5.08 0.00 42.13 3.28
216 217 6.157904 TCACACAAGTGGCATTTATCATTTG 58.842 36.000 5.08 0.00 45.91 2.32
217 218 6.343716 TCACACAAGTGGCATTTATCATTT 57.656 33.333 5.08 0.00 45.91 2.32
218 219 5.981088 TCACACAAGTGGCATTTATCATT 57.019 34.783 5.08 0.00 45.91 2.57
229 230 2.097466 GGTCAAAGTGTCACACAAGTGG 59.903 50.000 11.40 0.00 45.91 4.00
231 232 2.290641 TGGGTCAAAGTGTCACACAAGT 60.291 45.455 11.40 0.00 36.74 3.16
232 233 2.364632 TGGGTCAAAGTGTCACACAAG 58.635 47.619 11.40 0.00 36.74 3.16
233 234 2.498644 TGGGTCAAAGTGTCACACAA 57.501 45.000 11.40 0.00 36.74 3.33
234 235 2.727123 ATGGGTCAAAGTGTCACACA 57.273 45.000 11.40 0.00 36.74 3.72
235 236 2.812011 GGTATGGGTCAAAGTGTCACAC 59.188 50.000 0.00 0.00 34.10 3.82
236 237 2.708861 AGGTATGGGTCAAAGTGTCACA 59.291 45.455 5.62 0.00 0.00 3.58
237 238 3.418684 AGGTATGGGTCAAAGTGTCAC 57.581 47.619 0.00 0.00 0.00 3.67
238 239 4.447138 AAAGGTATGGGTCAAAGTGTCA 57.553 40.909 0.00 0.00 0.00 3.58
239 240 5.784578 AAAAAGGTATGGGTCAAAGTGTC 57.215 39.130 0.00 0.00 0.00 3.67
260 261 9.048446 GGGTCATATCGCTATTTTAGTTGTAAA 57.952 33.333 0.00 0.00 0.00 2.01
261 262 7.658575 GGGGTCATATCGCTATTTTAGTTGTAA 59.341 37.037 0.00 0.00 0.00 2.41
262 263 7.156673 GGGGTCATATCGCTATTTTAGTTGTA 58.843 38.462 0.00 0.00 0.00 2.41
263 264 5.995897 GGGGTCATATCGCTATTTTAGTTGT 59.004 40.000 0.00 0.00 0.00 3.32
264 265 5.411669 GGGGGTCATATCGCTATTTTAGTTG 59.588 44.000 0.00 0.00 0.00 3.16
265 266 5.557866 GGGGGTCATATCGCTATTTTAGTT 58.442 41.667 0.00 0.00 0.00 2.24
266 267 5.161943 GGGGGTCATATCGCTATTTTAGT 57.838 43.478 0.00 0.00 0.00 2.24
294 295 2.881816 GCAAAAGGAAGAGAGAAGGGGG 60.882 54.545 0.00 0.00 0.00 5.40
295 296 2.441410 GCAAAAGGAAGAGAGAAGGGG 58.559 52.381 0.00 0.00 0.00 4.79
296 297 2.224867 TGGCAAAAGGAAGAGAGAAGGG 60.225 50.000 0.00 0.00 0.00 3.95
297 298 3.146104 TGGCAAAAGGAAGAGAGAAGG 57.854 47.619 0.00 0.00 0.00 3.46
298 299 4.142730 CGAATGGCAAAAGGAAGAGAGAAG 60.143 45.833 0.00 0.00 0.00 2.85
299 300 3.753272 CGAATGGCAAAAGGAAGAGAGAA 59.247 43.478 0.00 0.00 0.00 2.87
300 301 3.007940 TCGAATGGCAAAAGGAAGAGAGA 59.992 43.478 0.00 0.00 0.00 3.10
301 302 3.338249 TCGAATGGCAAAAGGAAGAGAG 58.662 45.455 0.00 0.00 0.00 3.20
302 303 3.417069 TCGAATGGCAAAAGGAAGAGA 57.583 42.857 0.00 0.00 0.00 3.10
303 304 4.503741 TTTCGAATGGCAAAAGGAAGAG 57.496 40.909 0.00 0.00 0.00 2.85
304 305 4.582656 TCTTTTCGAATGGCAAAAGGAAGA 59.417 37.500 0.00 0.00 39.24 2.87
305 306 4.870363 TCTTTTCGAATGGCAAAAGGAAG 58.130 39.130 0.00 0.00 39.24 3.46
306 307 4.927978 TCTTTTCGAATGGCAAAAGGAA 57.072 36.364 0.00 0.33 39.24 3.36
307 308 4.340950 ACTTCTTTTCGAATGGCAAAAGGA 59.659 37.500 0.00 0.44 39.24 3.36
308 309 4.620982 ACTTCTTTTCGAATGGCAAAAGG 58.379 39.130 0.00 0.00 39.24 3.11
309 310 5.519927 ACAACTTCTTTTCGAATGGCAAAAG 59.480 36.000 0.00 0.00 39.84 2.27
310 311 5.415221 ACAACTTCTTTTCGAATGGCAAAA 58.585 33.333 0.00 0.00 0.00 2.44
311 312 5.004922 ACAACTTCTTTTCGAATGGCAAA 57.995 34.783 0.00 0.00 0.00 3.68
312 313 4.097135 TGACAACTTCTTTTCGAATGGCAA 59.903 37.500 0.00 0.00 29.04 4.52
313 314 3.629855 TGACAACTTCTTTTCGAATGGCA 59.370 39.130 0.00 0.00 29.37 4.92
314 315 4.223320 TGACAACTTCTTTTCGAATGGC 57.777 40.909 0.00 0.00 0.00 4.40
315 316 4.618489 GCATGACAACTTCTTTTCGAATGG 59.382 41.667 0.00 0.00 0.00 3.16
316 317 5.455392 AGCATGACAACTTCTTTTCGAATG 58.545 37.500 0.00 0.00 0.00 2.67
317 318 5.695851 AGCATGACAACTTCTTTTCGAAT 57.304 34.783 0.00 0.00 0.00 3.34
318 319 5.065859 TCAAGCATGACAACTTCTTTTCGAA 59.934 36.000 0.00 0.00 0.00 3.71
319 320 4.574421 TCAAGCATGACAACTTCTTTTCGA 59.426 37.500 0.00 0.00 0.00 3.71
320 321 4.847633 TCAAGCATGACAACTTCTTTTCG 58.152 39.130 0.00 0.00 0.00 3.46
383 384 5.244755 ACACATGGCAACTTCAAACTTTTT 58.755 33.333 0.00 0.00 37.61 1.94
384 385 4.831107 ACACATGGCAACTTCAAACTTTT 58.169 34.783 0.00 0.00 37.61 2.27
385 386 4.470334 ACACATGGCAACTTCAAACTTT 57.530 36.364 0.00 0.00 37.61 2.66
386 387 4.432712 GAACACATGGCAACTTCAAACTT 58.567 39.130 0.00 0.00 37.61 2.66
387 388 3.489059 CGAACACATGGCAACTTCAAACT 60.489 43.478 0.00 0.00 37.61 2.66
388 389 2.788786 CGAACACATGGCAACTTCAAAC 59.211 45.455 0.00 0.00 37.61 2.93
389 390 2.425312 ACGAACACATGGCAACTTCAAA 59.575 40.909 0.00 0.00 37.61 2.69
390 391 2.020720 ACGAACACATGGCAACTTCAA 58.979 42.857 0.00 0.00 37.61 2.69
391 392 1.601903 GACGAACACATGGCAACTTCA 59.398 47.619 0.00 0.00 37.61 3.02
392 393 1.398451 CGACGAACACATGGCAACTTC 60.398 52.381 0.00 0.00 37.61 3.01
393 394 0.586319 CGACGAACACATGGCAACTT 59.414 50.000 0.00 0.00 37.61 2.66
394 395 1.841663 GCGACGAACACATGGCAACT 61.842 55.000 0.00 0.00 37.61 3.16
395 396 1.440353 GCGACGAACACATGGCAAC 60.440 57.895 0.00 0.00 0.00 4.17
396 397 2.612567 GGCGACGAACACATGGCAA 61.613 57.895 0.00 0.00 0.00 4.52
397 398 3.047280 GGCGACGAACACATGGCA 61.047 61.111 0.00 0.00 0.00 4.92
409 410 0.713883 CATAAGTGTCACACGGCGAC 59.286 55.000 16.62 0.57 39.64 5.19
410 411 0.599060 TCATAAGTGTCACACGGCGA 59.401 50.000 16.62 0.00 39.64 5.54
411 412 0.992072 CTCATAAGTGTCACACGGCG 59.008 55.000 4.80 4.80 39.64 6.46
412 413 1.359848 CCTCATAAGTGTCACACGGC 58.640 55.000 1.22 0.00 39.64 5.68
413 414 1.275291 ACCCTCATAAGTGTCACACGG 59.725 52.381 1.22 0.00 39.64 4.94
414 415 2.743636 ACCCTCATAAGTGTCACACG 57.256 50.000 1.22 0.00 39.64 4.49
415 416 6.870971 TTTTAACCCTCATAAGTGTCACAC 57.129 37.500 0.00 0.00 34.10 3.82
437 438 7.898636 TGGATTGGTACCCTAATCAATCTTTTT 59.101 33.333 20.73 0.00 42.77 1.94
438 439 7.418378 TGGATTGGTACCCTAATCAATCTTTT 58.582 34.615 20.73 0.00 42.77 2.27
439 440 6.980577 TGGATTGGTACCCTAATCAATCTTT 58.019 36.000 20.73 0.00 42.77 2.52
440 441 6.590656 TGGATTGGTACCCTAATCAATCTT 57.409 37.500 20.73 0.00 42.77 2.40
441 442 6.590656 TTGGATTGGTACCCTAATCAATCT 57.409 37.500 20.73 0.00 42.77 2.40
442 443 6.209391 CCATTGGATTGGTACCCTAATCAATC 59.791 42.308 20.73 15.85 42.57 2.67
452 453 5.160607 TCGATATCCATTGGATTGGTACC 57.839 43.478 22.87 4.43 39.79 3.34
453 454 6.173339 ACATCGATATCCATTGGATTGGTAC 58.827 40.000 22.87 9.51 39.79 3.34
528 532 0.179078 TACTCGGCGGTGTGTGTTTT 60.179 50.000 7.21 0.00 0.00 2.43
532 536 2.126071 CCTACTCGGCGGTGTGTG 60.126 66.667 7.21 4.72 0.00 3.82
615 619 3.857854 CGCACGTGAGGCTGATGC 61.858 66.667 22.23 0.00 38.76 3.91
775 779 9.990360 CCCACCCGCTTTATTTTATTTATTATT 57.010 29.630 0.00 0.00 0.00 1.40
776 780 9.369672 TCCCACCCGCTTTATTTTATTTATTAT 57.630 29.630 0.00 0.00 0.00 1.28
777 781 8.763984 TCCCACCCGCTTTATTTTATTTATTA 57.236 30.769 0.00 0.00 0.00 0.98
778 782 7.201965 CCTCCCACCCGCTTTATTTTATTTATT 60.202 37.037 0.00 0.00 0.00 1.40
865 869 4.565850 GGGGGCGAGGAGGAGGAT 62.566 72.222 0.00 0.00 0.00 3.24
916 920 2.050934 GCCGGAACCCTAGACGAGT 61.051 63.158 5.05 0.00 0.00 4.18
918 922 3.136123 CGCCGGAACCCTAGACGA 61.136 66.667 5.05 0.00 0.00 4.20
1168 1432 5.528690 CCATGAAAGAAACAGTCAAGTCAGA 59.471 40.000 0.00 0.00 0.00 3.27
1170 1434 4.036734 GCCATGAAAGAAACAGTCAAGTCA 59.963 41.667 0.00 0.00 0.00 3.41
1171 1435 4.540824 GCCATGAAAGAAACAGTCAAGTC 58.459 43.478 0.00 0.00 0.00 3.01
1172 1436 3.003689 CGCCATGAAAGAAACAGTCAAGT 59.996 43.478 0.00 0.00 0.00 3.16
1174 1438 2.948979 ACGCCATGAAAGAAACAGTCAA 59.051 40.909 0.00 0.00 0.00 3.18
1175 1439 2.290367 CACGCCATGAAAGAAACAGTCA 59.710 45.455 0.00 0.00 0.00 3.41
1176 1440 2.350772 CCACGCCATGAAAGAAACAGTC 60.351 50.000 0.00 0.00 0.00 3.51
1177 1441 1.608590 CCACGCCATGAAAGAAACAGT 59.391 47.619 0.00 0.00 0.00 3.55
1179 1443 1.686355 ACCACGCCATGAAAGAAACA 58.314 45.000 0.00 0.00 0.00 2.83
1180 1444 2.223711 ACAACCACGCCATGAAAGAAAC 60.224 45.455 0.00 0.00 0.00 2.78
1204 1468 5.637810 TCCGTCAGTCAATCATCAGTTTAAC 59.362 40.000 0.00 0.00 0.00 2.01
1212 1476 5.525012 TCAATCAATCCGTCAGTCAATCATC 59.475 40.000 0.00 0.00 0.00 2.92
1213 1477 5.430886 TCAATCAATCCGTCAGTCAATCAT 58.569 37.500 0.00 0.00 0.00 2.45
1214 1478 4.831107 TCAATCAATCCGTCAGTCAATCA 58.169 39.130 0.00 0.00 0.00 2.57
1242 1506 3.792047 GCAGCAGCGCACGAATCA 61.792 61.111 11.47 0.00 0.00 2.57
1297 1563 4.442733 GCGAATTCAACGAAACAAAATCCA 59.557 37.500 6.22 0.00 0.00 3.41
1326 1592 8.028938 CCTAATCCAAATTACTTTCACCACAAG 58.971 37.037 0.00 0.00 0.00 3.16
1332 1601 5.449999 CGCCCCTAATCCAAATTACTTTCAC 60.450 44.000 0.00 0.00 0.00 3.18
1338 1607 2.940158 ACCGCCCCTAATCCAAATTAC 58.060 47.619 0.00 0.00 0.00 1.89
1367 1636 2.352960 GCACTCAAATTCCTCATCGTCC 59.647 50.000 0.00 0.00 0.00 4.79
1393 1662 2.231235 CCACAACCACAAAGGATAAGGC 59.769 50.000 0.00 0.00 41.22 4.35
1415 1684 9.569167 TCTAATTACAAGAACAATCTACACTCG 57.431 33.333 0.00 0.00 33.77 4.18
1543 1812 0.040425 GCCACACGTAACTGCAAAGG 60.040 55.000 0.00 0.00 0.00 3.11
1734 2008 1.597742 CATACCCTCCATCGCCAAAG 58.402 55.000 0.00 0.00 0.00 2.77
1736 2010 1.148273 GCATACCCTCCATCGCCAA 59.852 57.895 0.00 0.00 0.00 4.52
1741 2015 0.947244 CGCTTTGCATACCCTCCATC 59.053 55.000 0.00 0.00 0.00 3.51
1842 2116 2.224621 ACTTTCCACATAGCAGTGCACT 60.225 45.455 15.25 15.25 38.18 4.40
1882 2156 1.305201 TCCGTGTTTGGAAGAAGCAC 58.695 50.000 0.00 0.00 34.30 4.40
2010 2295 2.858344 CTGCGTGCCATTGTAGTACTAC 59.142 50.000 23.58 23.58 36.63 2.73
2098 2383 5.743636 AATGTTTGTATTGGTGCATCCTT 57.256 34.783 0.00 0.00 37.07 3.36
2100 2385 8.491331 AAATAAATGTTTGTATTGGTGCATCC 57.509 30.769 0.00 0.00 0.00 3.51
2275 2677 4.023450 CAGCAACAGTCATCAGAACAACAT 60.023 41.667 0.00 0.00 0.00 2.71
2379 2781 6.941436 TGCAATACCATACATCAATGCTATGA 59.059 34.615 11.12 0.00 33.87 2.15
2386 2788 7.013655 GGAGAAGTTGCAATACCATACATCAAT 59.986 37.037 0.59 0.00 0.00 2.57
2409 2811 6.778069 TCCTGACAGTAGTTCATTATAGGGAG 59.222 42.308 0.93 0.00 0.00 4.30
2452 2854 7.725251 TGCAGTCCTGAAACAAAAATTAAGAT 58.275 30.769 0.00 0.00 0.00 2.40
2462 2864 6.714810 ACATATAGTTTGCAGTCCTGAAACAA 59.285 34.615 16.97 4.41 35.29 2.83
2533 2942 9.465199 AAACATATATGGCATGCATAGTCATAA 57.535 29.630 21.36 13.14 0.00 1.90
2560 2969 2.676632 TGTGAAGTACCGTGTGTGTT 57.323 45.000 0.00 0.00 0.00 3.32
2588 2998 5.592282 TGTTCCTTCTATTGACACTTTTGCA 59.408 36.000 0.00 0.00 0.00 4.08
2604 3014 5.173854 CACGCAAATTTTCTTCTGTTCCTTC 59.826 40.000 0.00 0.00 0.00 3.46
2625 3035 5.938322 ACAAAAGCCTGTAAATATGACACG 58.062 37.500 0.00 0.00 0.00 4.49
2626 3036 8.458843 ACATACAAAAGCCTGTAAATATGACAC 58.541 33.333 0.00 0.00 35.48 3.67
2782 3193 6.752351 CGATGAATTAATCCCCTGTATACTCG 59.248 42.308 4.17 0.00 0.00 4.18
2786 3197 6.367374 TGCGATGAATTAATCCCCTGTATA 57.633 37.500 0.00 0.00 0.00 1.47
3026 3437 4.428294 AGAATCACTATGTCATGTGGGG 57.572 45.455 12.51 0.00 35.15 4.96
3110 3554 3.873910 TCTTGCTAGCAGGTACAATTCC 58.126 45.455 24.36 0.00 0.00 3.01
3232 3676 8.121167 TGGAACAAACAATAATGAAAAACGTC 57.879 30.769 0.00 0.00 31.92 4.34
3250 3694 6.911195 AGCTTTTCCTGCTCAAATGGAACAA 61.911 40.000 0.00 0.00 38.04 2.83
3317 3761 3.005472 GCGAGGCTATATCACCAACTGTA 59.995 47.826 0.00 0.00 0.00 2.74
3460 3905 6.949352 AGATGGCAAAACTTGATATACCAG 57.051 37.500 0.00 0.00 0.00 4.00
3467 3920 6.165700 AGAAACAAGATGGCAAAACTTGAT 57.834 33.333 26.60 18.02 42.12 2.57
3468 3921 5.596836 AGAAACAAGATGGCAAAACTTGA 57.403 34.783 26.60 0.00 42.12 3.02
3524 3977 5.179368 CAGTGTTGTGTGTAAGGATGGTAAG 59.821 44.000 0.00 0.00 0.00 2.34
3538 3991 1.134128 TGCACAGGATCAGTGTTGTGT 60.134 47.619 16.04 4.05 42.13 3.72
3543 3996 3.920231 ATATGTGCACAGGATCAGTGT 57.080 42.857 25.84 7.37 39.17 3.55
3600 4053 5.123344 GTGGTGCAACTAGTATTTGTTAGGG 59.877 44.000 2.04 0.00 36.74 3.53
4061 4522 3.282021 TGGATGTGCTTGCTATTCTTCC 58.718 45.455 0.00 0.00 0.00 3.46
4092 4553 6.061022 TGGATATGCTGTTCTTCCAGTTTA 57.939 37.500 0.00 0.00 34.84 2.01
4134 4595 1.737735 TGACAACAGGCATCTCGCG 60.738 57.895 0.00 0.00 43.84 5.87
4345 4807 3.278574 CCAAAGACTTGACAACAGACCA 58.721 45.455 0.00 0.00 34.14 4.02
4361 4823 1.472480 CTCGGGTATTTGCCACCAAAG 59.528 52.381 0.00 0.00 43.60 2.77
4432 4894 1.750778 CATAGATTGGGTTGGTGCACC 59.249 52.381 29.67 29.67 35.88 5.01
4509 4971 6.183360 GCTTTTGCAAATTTGATATGGTCCAG 60.183 38.462 22.31 3.13 46.58 3.86
4549 5011 4.703897 TGTAAAGTGCAGGCCTGATATAC 58.296 43.478 37.21 26.06 0.00 1.47
4556 5018 0.034089 GGGATGTAAAGTGCAGGCCT 60.034 55.000 0.00 0.00 0.00 5.19
4614 5082 1.974265 TGGCCATCTTTGTGTTCGAA 58.026 45.000 0.00 0.00 0.00 3.71
4615 5083 2.198827 ATGGCCATCTTTGTGTTCGA 57.801 45.000 14.09 0.00 0.00 3.71
4616 5084 3.378112 ACATATGGCCATCTTTGTGTTCG 59.622 43.478 24.80 0.08 0.00 3.95
4617 5085 4.989279 ACATATGGCCATCTTTGTGTTC 57.011 40.909 24.80 0.00 0.00 3.18
4618 5086 5.743636 AAACATATGGCCATCTTTGTGTT 57.256 34.783 24.80 21.10 0.00 3.32
4619 5087 5.245751 TCAAAACATATGGCCATCTTTGTGT 59.754 36.000 24.80 16.49 0.00 3.72
4637 5105 7.463469 AAAATCAAGACATTCGGTTCAAAAC 57.537 32.000 0.00 0.00 0.00 2.43
4759 5230 5.954752 TCCCACATGCATTTGGTTAATAAGA 59.045 36.000 26.25 13.97 0.00 2.10
4788 5259 1.079256 CTCCCTCTCCCTCCACACA 59.921 63.158 0.00 0.00 0.00 3.72
4928 5405 7.201444 CGTCTAAATCAGTTTTGCTACCACTAG 60.201 40.741 0.00 0.00 0.00 2.57
4938 5415 7.802738 TGAACCATACGTCTAAATCAGTTTTG 58.197 34.615 0.00 0.00 0.00 2.44
5005 5482 9.219603 TGTACTCTCTTTCTCCAAACATAAATG 57.780 33.333 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.