Multiple sequence alignment - TraesCS5A01G195000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G195000 chr5A 100.000 6186 0 0 1 6186 398286232 398280047 0.000000e+00 11424
1 TraesCS5A01G195000 chr5A 88.184 457 30 9 2152 2589 220912437 220911986 1.980000e-144 523
2 TraesCS5A01G195000 chr5A 84.302 516 42 18 974 1466 220913182 220912683 9.390000e-128 468
3 TraesCS5A01G195000 chr5D 92.345 3122 138 26 861 3936 301117297 301114231 0.000000e+00 4348
4 TraesCS5A01G195000 chr5D 92.886 1490 70 18 4718 6186 301113793 301112319 0.000000e+00 2132
5 TraesCS5A01G195000 chr5D 92.449 437 25 7 3948 4382 301114247 301113817 8.810000e-173 617
6 TraesCS5A01G195000 chr5D 88.303 436 26 9 2173 2589 461346114 461345685 3.330000e-137 499
7 TraesCS5A01G195000 chr5D 90.435 230 20 1 1521 1750 461345414 461345187 1.010000e-77 302
8 TraesCS5A01G195000 chr5D 89.130 230 25 0 1521 1750 461346376 461346147 2.820000e-73 287
9 TraesCS5A01G195000 chr5D 92.118 203 14 2 262 462 488352507 488352305 1.010000e-72 285
10 TraesCS5A01G195000 chr5D 89.732 224 18 4 1244 1466 461346620 461346401 1.310000e-71 281
11 TraesCS5A01G195000 chr5D 90.090 222 15 3 974 1188 461346912 461346691 1.310000e-71 281
12 TraesCS5A01G195000 chr5D 86.730 211 20 6 446 655 301124964 301124761 1.730000e-55 228
13 TraesCS5A01G195000 chr5B 93.181 2229 97 19 1731 3936 344315017 344312821 0.000000e+00 3223
14 TraesCS5A01G195000 chr5B 92.491 1132 63 17 4594 5713 344311446 344310325 0.000000e+00 1600
15 TraesCS5A01G195000 chr5B 87.006 1316 99 34 446 1722 344318165 344316883 0.000000e+00 1417
16 TraesCS5A01G195000 chr5B 94.419 663 31 3 3948 4608 344312837 344312179 0.000000e+00 1014
17 TraesCS5A01G195000 chr5B 96.916 454 6 3 5739 6185 344310339 344309887 0.000000e+00 754
18 TraesCS5A01G195000 chr3B 93.409 440 25 4 2149 2586 582286415 582286852 0.000000e+00 649
19 TraesCS5A01G195000 chr3B 90.551 254 20 1 1500 1749 582286168 582286421 3.570000e-87 333
20 TraesCS5A01G195000 chr3B 89.030 237 15 2 1021 1257 330596738 330596963 3.650000e-72 283
21 TraesCS5A01G195000 chr3B 95.238 63 3 0 1404 1466 582286108 582286170 3.950000e-17 100
22 TraesCS5A01G195000 chr3A 87.425 501 40 12 974 1466 737829599 737830084 7.010000e-154 555
23 TraesCS5A01G195000 chr3A 87.052 502 41 13 974 1466 737838257 737838743 4.220000e-151 545
24 TraesCS5A01G195000 chr3A 87.052 502 41 13 974 1466 737855095 737855581 4.220000e-151 545
25 TraesCS5A01G195000 chr3A 87.885 454 31 9 2152 2586 737830333 737830781 4.280000e-141 512
26 TraesCS5A01G195000 chr3A 87.885 454 31 9 2152 2586 737838991 737839439 4.280000e-141 512
27 TraesCS5A01G195000 chr3A 87.665 454 32 9 2152 2586 737855829 737856277 1.990000e-139 507
28 TraesCS5A01G195000 chr3A 86.822 258 29 2 1500 1753 737830082 737830338 3.650000e-72 283
29 TraesCS5A01G195000 chr3A 86.434 258 29 3 1500 1753 737838741 737838996 1.700000e-70 278
30 TraesCS5A01G195000 chr3A 86.434 258 29 3 1500 1753 737855579 737855834 1.700000e-70 278
31 TraesCS5A01G195000 chr3D 87.174 460 35 11 974 1425 141475363 141475806 9.260000e-138 501
32 TraesCS5A01G195000 chr3D 92.836 335 21 2 2252 2586 141476592 141476923 3.350000e-132 483
33 TraesCS5A01G195000 chr3D 87.834 337 21 10 974 1302 141533438 141533762 1.630000e-100 377
34 TraesCS5A01G195000 chr1B 83.730 504 53 14 973 1466 638058794 638058310 3.400000e-122 449
35 TraesCS5A01G195000 chr1B 88.889 252 24 1 1503 1750 638058309 638058058 2.170000e-79 307
36 TraesCS5A01G195000 chr7A 96.907 194 6 0 252 445 130378181 130378374 5.980000e-85 326
37 TraesCS5A01G195000 chr1A 97.268 183 5 0 264 446 330765867 330766049 1.670000e-80 311
38 TraesCS5A01G195000 chr1A 95.312 192 6 3 257 445 309178222 309178413 1.010000e-77 302
39 TraesCS5A01G195000 chr4A 97.753 178 4 0 268 445 47138074 47137897 2.170000e-79 307
40 TraesCS5A01G195000 chr2A 96.739 184 6 0 262 445 63805895 63805712 2.170000e-79 307
41 TraesCS5A01G195000 chr2A 95.288 191 7 2 257 446 38649960 38649771 1.010000e-77 302
42 TraesCS5A01G195000 chr2A 91.981 212 12 5 237 445 195350147 195349938 6.070000e-75 292
43 TraesCS5A01G195000 chr2A 90.090 222 18 2 253 471 755063750 755063530 1.010000e-72 285


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G195000 chr5A 398280047 398286232 6185 True 11424.000000 11424 100.000000 1 6186 1 chr5A.!!$R1 6185
1 TraesCS5A01G195000 chr5A 220911986 220913182 1196 True 495.500000 523 86.243000 974 2589 2 chr5A.!!$R2 1615
2 TraesCS5A01G195000 chr5D 301112319 301117297 4978 True 2365.666667 4348 92.560000 861 6186 3 chr5D.!!$R3 5325
3 TraesCS5A01G195000 chr5D 461345187 461346912 1725 True 330.000000 499 89.538000 974 2589 5 chr5D.!!$R4 1615
4 TraesCS5A01G195000 chr5B 344309887 344318165 8278 True 1601.600000 3223 92.802600 446 6185 5 chr5B.!!$R1 5739
5 TraesCS5A01G195000 chr3B 582286108 582286852 744 False 360.666667 649 93.066000 1404 2586 3 chr3B.!!$F2 1182
6 TraesCS5A01G195000 chr3A 737829599 737830781 1182 False 450.000000 555 87.377333 974 2586 3 chr3A.!!$F1 1612
7 TraesCS5A01G195000 chr3A 737838257 737839439 1182 False 445.000000 545 87.123667 974 2586 3 chr3A.!!$F2 1612
8 TraesCS5A01G195000 chr3A 737855095 737856277 1182 False 443.333333 545 87.050333 974 2586 3 chr3A.!!$F3 1612
9 TraesCS5A01G195000 chr3D 141475363 141476923 1560 False 492.000000 501 90.005000 974 2586 2 chr3D.!!$F2 1612
10 TraesCS5A01G195000 chr1B 638058058 638058794 736 True 378.000000 449 86.309500 973 1750 2 chr1B.!!$R1 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
681 684 0.519961 GCGGGTTAAACGTTGCTGAT 59.480 50.000 0.0 0.0 0.00 2.90 F
1218 1292 0.395724 TCTCGCTGTCCTCCTGCATA 60.396 55.000 0.0 0.0 37.85 3.14 F
1499 1609 1.545582 CTTTTGATGCCGTGGGATTGT 59.454 47.619 0.0 0.0 0.00 2.71 F
2757 4781 0.972134 TGCTTGAGGAGGTGTCTGAG 59.028 55.000 0.0 0.0 0.00 3.35 F
3395 5435 1.027357 GCTGGTATTGGGCACATCTG 58.973 55.000 0.0 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 1609 0.756294 TTGAGAACACTCTTGGCCGA 59.244 50.000 0.00 0.00 29.54 5.54 R
2443 4466 1.065926 CATAAGAGGCTGGTGTGCTGA 60.066 52.381 0.00 0.00 0.00 4.26 R
3346 5386 0.101579 TCGCATCAATGGCAATGCAG 59.898 50.000 19.41 13.10 46.83 4.41 R
3950 5991 1.668419 GCATCGAGCAACCTTACCAT 58.332 50.000 0.00 0.00 44.79 3.55 R
5213 8006 0.662970 GCAAACGGAAATTGCGCAGA 60.663 50.000 11.31 1.94 43.14 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.092521 GACTAATATGGTGATTTGGTCATCTG 57.907 38.462 0.00 0.00 38.83 2.90
26 27 7.000472 ACTAATATGGTGATTTGGTCATCTGG 59.000 38.462 0.00 0.00 38.83 3.86
27 28 3.744940 ATGGTGATTTGGTCATCTGGT 57.255 42.857 0.00 0.00 38.83 4.00
28 29 3.071874 TGGTGATTTGGTCATCTGGTC 57.928 47.619 0.00 0.00 38.83 4.02
29 30 2.644299 TGGTGATTTGGTCATCTGGTCT 59.356 45.455 0.00 0.00 38.83 3.85
30 31 3.074390 TGGTGATTTGGTCATCTGGTCTT 59.926 43.478 0.00 0.00 38.83 3.01
31 32 4.288366 TGGTGATTTGGTCATCTGGTCTTA 59.712 41.667 0.00 0.00 38.83 2.10
32 33 4.878397 GGTGATTTGGTCATCTGGTCTTAG 59.122 45.833 0.00 0.00 39.48 2.18
33 34 5.338381 GGTGATTTGGTCATCTGGTCTTAGA 60.338 44.000 0.00 0.00 39.48 2.10
34 35 5.582665 GTGATTTGGTCATCTGGTCTTAGAC 59.417 44.000 3.36 3.36 39.48 2.59
35 36 5.485353 TGATTTGGTCATCTGGTCTTAGACT 59.515 40.000 12.41 0.00 32.47 3.24
36 37 5.407407 TTTGGTCATCTGGTCTTAGACTC 57.593 43.478 12.41 3.36 32.47 3.36
37 38 4.323569 TGGTCATCTGGTCTTAGACTCT 57.676 45.455 12.41 0.00 32.47 3.24
38 39 4.678256 TGGTCATCTGGTCTTAGACTCTT 58.322 43.478 12.41 0.00 32.47 2.85
39 40 5.827756 TGGTCATCTGGTCTTAGACTCTTA 58.172 41.667 12.41 0.00 32.47 2.10
40 41 5.888724 TGGTCATCTGGTCTTAGACTCTTAG 59.111 44.000 12.41 6.30 32.47 2.18
41 42 5.221165 GGTCATCTGGTCTTAGACTCTTAGC 60.221 48.000 12.41 0.00 32.47 3.09
42 43 5.358442 GTCATCTGGTCTTAGACTCTTAGCA 59.642 44.000 12.41 0.00 32.47 3.49
43 44 5.952347 TCATCTGGTCTTAGACTCTTAGCAA 59.048 40.000 12.41 0.00 32.47 3.91
44 45 5.906113 TCTGGTCTTAGACTCTTAGCAAG 57.094 43.478 12.41 0.00 32.47 4.01
45 46 4.158764 TCTGGTCTTAGACTCTTAGCAAGC 59.841 45.833 12.41 0.00 32.47 4.01
46 47 3.832490 TGGTCTTAGACTCTTAGCAAGCA 59.168 43.478 12.41 0.00 32.47 3.91
47 48 4.467795 TGGTCTTAGACTCTTAGCAAGCAT 59.532 41.667 12.41 0.00 32.47 3.79
48 49 5.047188 GGTCTTAGACTCTTAGCAAGCATC 58.953 45.833 12.41 0.00 32.47 3.91
49 50 4.737765 GTCTTAGACTCTTAGCAAGCATCG 59.262 45.833 4.94 0.00 0.00 3.84
50 51 4.640647 TCTTAGACTCTTAGCAAGCATCGA 59.359 41.667 0.00 0.00 0.00 3.59
51 52 5.300539 TCTTAGACTCTTAGCAAGCATCGAT 59.699 40.000 0.00 0.00 0.00 3.59
52 53 6.486993 TCTTAGACTCTTAGCAAGCATCGATA 59.513 38.462 0.00 0.00 0.00 2.92
53 54 5.720371 AGACTCTTAGCAAGCATCGATAT 57.280 39.130 0.00 0.00 0.00 1.63
54 55 5.468592 AGACTCTTAGCAAGCATCGATATG 58.531 41.667 0.00 0.00 36.09 1.78
55 56 5.010516 AGACTCTTAGCAAGCATCGATATGT 59.989 40.000 0.00 0.00 35.38 2.29
56 57 5.605534 ACTCTTAGCAAGCATCGATATGTT 58.394 37.500 0.00 0.00 35.38 2.71
57 58 5.464722 ACTCTTAGCAAGCATCGATATGTTG 59.535 40.000 0.00 3.44 35.38 3.33
58 59 5.359756 TCTTAGCAAGCATCGATATGTTGT 58.640 37.500 0.00 0.00 35.38 3.32
59 60 5.817296 TCTTAGCAAGCATCGATATGTTGTT 59.183 36.000 0.00 3.09 35.38 2.83
60 61 4.542662 AGCAAGCATCGATATGTTGTTC 57.457 40.909 0.00 0.00 35.38 3.18
61 62 4.194640 AGCAAGCATCGATATGTTGTTCT 58.805 39.130 0.00 0.00 35.38 3.01
62 63 4.637534 AGCAAGCATCGATATGTTGTTCTT 59.362 37.500 0.00 0.00 35.38 2.52
63 64 4.731961 GCAAGCATCGATATGTTGTTCTTG 59.268 41.667 0.00 0.00 34.20 3.02
64 65 4.542662 AGCATCGATATGTTGTTCTTGC 57.457 40.909 0.00 0.00 35.38 4.01
65 66 3.940852 AGCATCGATATGTTGTTCTTGCA 59.059 39.130 0.00 0.00 35.38 4.08
66 67 4.395854 AGCATCGATATGTTGTTCTTGCAA 59.604 37.500 0.00 0.00 35.38 4.08
67 68 5.066893 AGCATCGATATGTTGTTCTTGCAAT 59.933 36.000 0.00 0.00 35.38 3.56
68 69 5.745294 GCATCGATATGTTGTTCTTGCAATT 59.255 36.000 0.00 0.00 35.38 2.32
69 70 6.254157 GCATCGATATGTTGTTCTTGCAATTT 59.746 34.615 0.00 0.00 35.38 1.82
70 71 7.514125 GCATCGATATGTTGTTCTTGCAATTTC 60.514 37.037 0.00 0.00 35.38 2.17
71 72 7.144722 TCGATATGTTGTTCTTGCAATTTCT 57.855 32.000 0.00 0.00 0.00 2.52
72 73 7.592938 TCGATATGTTGTTCTTGCAATTTCTT 58.407 30.769 0.00 0.00 0.00 2.52
73 74 8.726068 TCGATATGTTGTTCTTGCAATTTCTTA 58.274 29.630 0.00 0.00 0.00 2.10
74 75 9.340695 CGATATGTTGTTCTTGCAATTTCTTAA 57.659 29.630 0.00 0.00 0.00 1.85
79 80 9.429359 TGTTGTTCTTGCAATTTCTTAAAAAGA 57.571 25.926 0.00 0.00 35.26 2.52
119 120 9.700831 ATCATAATCCTAAAAACAAGTAGGCTT 57.299 29.630 0.00 0.00 37.41 4.35
128 129 1.714794 CAAGTAGGCTTGTGTCTCCG 58.285 55.000 0.00 0.00 45.18 4.63
129 130 1.000955 CAAGTAGGCTTGTGTCTCCGT 59.999 52.381 0.00 0.00 45.18 4.69
130 131 0.889306 AGTAGGCTTGTGTCTCCGTC 59.111 55.000 0.00 0.00 0.00 4.79
131 132 0.889306 GTAGGCTTGTGTCTCCGTCT 59.111 55.000 0.00 0.00 0.00 4.18
132 133 1.135344 GTAGGCTTGTGTCTCCGTCTC 60.135 57.143 0.00 0.00 0.00 3.36
133 134 1.079750 GGCTTGTGTCTCCGTCTCC 60.080 63.158 0.00 0.00 0.00 3.71
134 135 1.536943 GGCTTGTGTCTCCGTCTCCT 61.537 60.000 0.00 0.00 0.00 3.69
135 136 1.174783 GCTTGTGTCTCCGTCTCCTA 58.825 55.000 0.00 0.00 0.00 2.94
136 137 1.544691 GCTTGTGTCTCCGTCTCCTAA 59.455 52.381 0.00 0.00 0.00 2.69
137 138 2.029290 GCTTGTGTCTCCGTCTCCTAAA 60.029 50.000 0.00 0.00 0.00 1.85
138 139 3.554337 GCTTGTGTCTCCGTCTCCTAAAA 60.554 47.826 0.00 0.00 0.00 1.52
139 140 3.936372 TGTGTCTCCGTCTCCTAAAAG 57.064 47.619 0.00 0.00 0.00 2.27
140 141 3.493334 TGTGTCTCCGTCTCCTAAAAGA 58.507 45.455 0.00 0.00 0.00 2.52
141 142 3.893200 TGTGTCTCCGTCTCCTAAAAGAA 59.107 43.478 0.00 0.00 0.00 2.52
142 143 4.022242 TGTGTCTCCGTCTCCTAAAAGAAG 60.022 45.833 0.00 0.00 0.00 2.85
143 144 4.217983 GTGTCTCCGTCTCCTAAAAGAAGA 59.782 45.833 0.00 0.00 0.00 2.87
144 145 5.017490 TGTCTCCGTCTCCTAAAAGAAGAT 58.983 41.667 0.00 0.00 0.00 2.40
145 146 5.125739 TGTCTCCGTCTCCTAAAAGAAGATC 59.874 44.000 0.00 0.00 0.00 2.75
146 147 5.358725 GTCTCCGTCTCCTAAAAGAAGATCT 59.641 44.000 0.00 0.00 0.00 2.75
147 148 6.543100 GTCTCCGTCTCCTAAAAGAAGATCTA 59.457 42.308 0.00 0.00 0.00 1.98
148 149 7.229907 GTCTCCGTCTCCTAAAAGAAGATCTAT 59.770 40.741 0.00 0.00 0.00 1.98
149 150 8.438373 TCTCCGTCTCCTAAAAGAAGATCTATA 58.562 37.037 0.00 0.00 0.00 1.31
150 151 8.991783 TCCGTCTCCTAAAAGAAGATCTATAA 57.008 34.615 0.00 0.00 0.00 0.98
151 152 9.589461 TCCGTCTCCTAAAAGAAGATCTATAAT 57.411 33.333 0.00 0.00 0.00 1.28
176 177 6.928979 TTTTCTCTCAATTCAAACGGTACA 57.071 33.333 0.00 0.00 0.00 2.90
177 178 6.928979 TTTCTCTCAATTCAAACGGTACAA 57.071 33.333 0.00 0.00 0.00 2.41
178 179 6.928979 TTCTCTCAATTCAAACGGTACAAA 57.071 33.333 0.00 0.00 0.00 2.83
179 180 6.928979 TCTCTCAATTCAAACGGTACAAAA 57.071 33.333 0.00 0.00 0.00 2.44
180 181 7.504924 TCTCTCAATTCAAACGGTACAAAAT 57.495 32.000 0.00 0.00 0.00 1.82
181 182 7.936584 TCTCTCAATTCAAACGGTACAAAATT 58.063 30.769 0.00 0.00 0.00 1.82
182 183 8.410141 TCTCTCAATTCAAACGGTACAAAATTT 58.590 29.630 0.00 0.00 0.00 1.82
183 184 8.346476 TCTCAATTCAAACGGTACAAAATTTG 57.654 30.769 3.89 3.89 34.11 2.32
184 185 8.191446 TCTCAATTCAAACGGTACAAAATTTGA 58.809 29.630 13.19 2.38 38.85 2.69
185 186 8.121167 TCAATTCAAACGGTACAAAATTTGAC 57.879 30.769 13.19 6.28 39.96 3.18
186 187 7.222999 TCAATTCAAACGGTACAAAATTTGACC 59.777 33.333 13.19 13.44 39.96 4.02
187 188 5.578005 TCAAACGGTACAAAATTTGACCA 57.422 34.783 13.19 0.00 36.42 4.02
188 189 5.962433 TCAAACGGTACAAAATTTGACCAA 58.038 33.333 13.19 0.00 36.42 3.67
189 190 6.395629 TCAAACGGTACAAAATTTGACCAAA 58.604 32.000 13.19 0.00 36.42 3.28
190 191 6.872020 TCAAACGGTACAAAATTTGACCAAAA 59.128 30.769 13.19 0.00 36.42 2.44
191 192 7.549488 TCAAACGGTACAAAATTTGACCAAAAT 59.451 29.630 13.19 0.96 40.32 1.82
193 194 8.943909 AACGGTACAAAATTTGACCAAAATTA 57.056 26.923 13.19 0.00 45.73 1.40
194 195 9.549078 AACGGTACAAAATTTGACCAAAATTAT 57.451 25.926 13.19 0.00 45.73 1.28
225 226 9.930693 AAAACTTTAAACAACCACAATACAAGA 57.069 25.926 0.00 0.00 0.00 3.02
234 235 8.911918 ACAACCACAATACAAGATTAGTAACA 57.088 30.769 0.00 0.00 0.00 2.41
235 236 8.780249 ACAACCACAATACAAGATTAGTAACAC 58.220 33.333 0.00 0.00 0.00 3.32
236 237 8.999431 CAACCACAATACAAGATTAGTAACACT 58.001 33.333 0.00 0.00 0.00 3.55
304 305 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
305 306 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
313 314 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
314 315 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
315 316 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
316 317 6.483307 GCCATAAGTATTGCACATCTAAGTCA 59.517 38.462 0.00 0.00 0.00 3.41
317 318 7.173907 GCCATAAGTATTGCACATCTAAGTCAT 59.826 37.037 0.00 0.00 0.00 3.06
318 319 9.710900 CCATAAGTATTGCACATCTAAGTCATA 57.289 33.333 0.00 0.00 0.00 2.15
322 323 8.824159 AGTATTGCACATCTAAGTCATATGTC 57.176 34.615 1.90 0.00 31.60 3.06
323 324 8.424133 AGTATTGCACATCTAAGTCATATGTCA 58.576 33.333 1.90 0.00 31.60 3.58
324 325 9.212641 GTATTGCACATCTAAGTCATATGTCAT 57.787 33.333 1.90 0.00 31.60 3.06
325 326 7.719778 TTGCACATCTAAGTCATATGTCATC 57.280 36.000 1.90 0.00 31.60 2.92
326 327 5.922544 TGCACATCTAAGTCATATGTCATCG 59.077 40.000 1.90 0.00 31.60 3.84
327 328 6.152379 GCACATCTAAGTCATATGTCATCGA 58.848 40.000 1.90 0.00 31.60 3.59
328 329 6.810676 GCACATCTAAGTCATATGTCATCGAT 59.189 38.462 1.90 0.00 31.60 3.59
329 330 7.009083 GCACATCTAAGTCATATGTCATCGATC 59.991 40.741 1.90 0.00 31.60 3.69
330 331 8.242739 CACATCTAAGTCATATGTCATCGATCT 58.757 37.037 1.90 0.00 31.60 2.75
331 332 8.801299 ACATCTAAGTCATATGTCATCGATCTT 58.199 33.333 1.90 0.00 0.00 2.40
334 335 9.284968 TCTAAGTCATATGTCATCGATCTTACA 57.715 33.333 1.90 0.70 0.00 2.41
337 338 8.754230 AGTCATATGTCATCGATCTTACATTG 57.246 34.615 17.85 15.42 34.54 2.82
338 339 8.579863 AGTCATATGTCATCGATCTTACATTGA 58.420 33.333 17.85 16.72 34.54 2.57
339 340 8.858186 GTCATATGTCATCGATCTTACATTGAG 58.142 37.037 17.85 11.03 34.54 3.02
340 341 8.796475 TCATATGTCATCGATCTTACATTGAGA 58.204 33.333 17.85 12.47 34.54 3.27
341 342 9.583765 CATATGTCATCGATCTTACATTGAGAT 57.416 33.333 17.85 8.83 36.60 2.75
343 344 7.936950 TGTCATCGATCTTACATTGAGATTC 57.063 36.000 0.00 0.00 34.13 2.52
344 345 6.638468 TGTCATCGATCTTACATTGAGATTCG 59.362 38.462 0.00 0.00 34.13 3.34
345 346 6.638873 GTCATCGATCTTACATTGAGATTCGT 59.361 38.462 0.00 0.00 34.13 3.85
346 347 7.803659 GTCATCGATCTTACATTGAGATTCGTA 59.196 37.037 0.00 0.00 34.13 3.43
347 348 8.515414 TCATCGATCTTACATTGAGATTCGTAT 58.485 33.333 0.00 0.00 34.13 3.06
348 349 8.582096 CATCGATCTTACATTGAGATTCGTATG 58.418 37.037 0.00 0.00 34.13 2.39
349 350 7.871853 TCGATCTTACATTGAGATTCGTATGA 58.128 34.615 0.00 0.00 34.13 2.15
350 351 8.349983 TCGATCTTACATTGAGATTCGTATGAA 58.650 33.333 0.00 0.00 38.76 2.57
394 395 9.683069 TTCTTTTTCTCTTTATGCTTGATTCAC 57.317 29.630 0.00 0.00 0.00 3.18
395 396 9.071276 TCTTTTTCTCTTTATGCTTGATTCACT 57.929 29.630 0.00 0.00 0.00 3.41
396 397 9.339492 CTTTTTCTCTTTATGCTTGATTCACTC 57.661 33.333 0.00 0.00 0.00 3.51
397 398 7.984422 TTTCTCTTTATGCTTGATTCACTCA 57.016 32.000 0.00 0.00 0.00 3.41
398 399 6.974932 TCTCTTTATGCTTGATTCACTCAC 57.025 37.500 0.00 0.00 32.17 3.51
399 400 6.705302 TCTCTTTATGCTTGATTCACTCACT 58.295 36.000 0.00 0.00 32.17 3.41
400 401 7.164122 TCTCTTTATGCTTGATTCACTCACTT 58.836 34.615 0.00 0.00 32.17 3.16
401 402 8.314021 TCTCTTTATGCTTGATTCACTCACTTA 58.686 33.333 0.00 0.00 32.17 2.24
402 403 8.484641 TCTTTATGCTTGATTCACTCACTTAG 57.515 34.615 0.00 0.00 32.17 2.18
403 404 8.314021 TCTTTATGCTTGATTCACTCACTTAGA 58.686 33.333 0.00 0.00 32.17 2.10
404 405 9.107177 CTTTATGCTTGATTCACTCACTTAGAT 57.893 33.333 0.00 0.00 32.17 1.98
405 406 6.922247 ATGCTTGATTCACTCACTTAGATG 57.078 37.500 0.00 0.00 32.17 2.90
406 407 5.798132 TGCTTGATTCACTCACTTAGATGT 58.202 37.500 0.00 0.00 32.17 3.06
407 408 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
408 409 5.447010 GCTTGATTCACTCACTTAGATGTGC 60.447 44.000 0.00 0.00 37.81 4.57
409 410 5.151297 TGATTCACTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
410 411 5.550290 TGATTCACTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
411 412 6.175471 TGATTCACTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
412 413 7.330262 TGATTCACTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
413 414 7.823799 TGATTCACTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
414 415 8.743085 ATTCACTCACTTAGATGTGCAATAAT 57.257 30.769 0.00 0.00 37.81 1.28
415 416 8.565896 TTCACTCACTTAGATGTGCAATAATT 57.434 30.769 0.00 0.00 37.81 1.40
416 417 9.665719 TTCACTCACTTAGATGTGCAATAATTA 57.334 29.630 0.00 0.00 37.81 1.40
417 418 9.317936 TCACTCACTTAGATGTGCAATAATTAG 57.682 33.333 0.00 0.00 37.81 1.73
418 419 9.317936 CACTCACTTAGATGTGCAATAATTAGA 57.682 33.333 0.00 0.00 37.81 2.10
419 420 9.539825 ACTCACTTAGATGTGCAATAATTAGAG 57.460 33.333 0.00 0.00 37.81 2.43
420 421 8.370493 TCACTTAGATGTGCAATAATTAGAGC 57.630 34.615 0.00 5.27 37.81 4.09
421 422 7.986889 TCACTTAGATGTGCAATAATTAGAGCA 59.013 33.333 9.76 9.76 37.81 4.26
431 432 8.543862 TGCAATAATTAGAGCACATCTAGATG 57.456 34.615 27.63 27.63 41.57 2.90
443 444 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
511 512 8.914328 TTTTTCCTAAAACTCGGTAACTTTTG 57.086 30.769 0.00 0.00 0.00 2.44
514 515 5.007921 TCCTAAAACTCGGTAACTTTTGTGC 59.992 40.000 0.00 0.00 0.00 4.57
516 517 3.963383 AACTCGGTAACTTTTGTGCAG 57.037 42.857 0.00 0.00 0.00 4.41
519 520 2.226330 TCGGTAACTTTTGTGCAGCAT 58.774 42.857 0.00 0.00 0.00 3.79
522 523 4.276183 TCGGTAACTTTTGTGCAGCATTTA 59.724 37.500 0.00 0.00 0.00 1.40
524 525 5.108027 CGGTAACTTTTGTGCAGCATTTAAC 60.108 40.000 0.00 0.00 0.00 2.01
526 527 6.143919 GGTAACTTTTGTGCAGCATTTAACTC 59.856 38.462 0.00 0.00 0.00 3.01
557 558 9.994432 CAAAAGTTATAAGCCTATTCTCAACTG 57.006 33.333 0.00 0.00 0.00 3.16
562 563 9.646427 GTTATAAGCCTATTCTCAACTGATAGG 57.354 37.037 4.63 4.63 37.88 2.57
608 611 9.462606 AACCACCTAATTTAGTAAGAGGATTTG 57.537 33.333 12.26 3.60 0.00 2.32
645 648 9.849166 ACAAGGTAAATTTTTATATGGACGTTG 57.151 29.630 13.33 13.33 0.00 4.10
646 649 8.803799 CAAGGTAAATTTTTATATGGACGTTGC 58.196 33.333 0.00 0.00 0.00 4.17
647 650 8.288689 AGGTAAATTTTTATATGGACGTTGCT 57.711 30.769 0.00 0.00 0.00 3.91
648 651 8.188139 AGGTAAATTTTTATATGGACGTTGCTG 58.812 33.333 0.00 0.00 0.00 4.41
649 652 8.185505 GGTAAATTTTTATATGGACGTTGCTGA 58.814 33.333 0.00 0.00 0.00 4.26
650 653 9.730420 GTAAATTTTTATATGGACGTTGCTGAT 57.270 29.630 0.00 0.00 0.00 2.90
651 654 8.633075 AAATTTTTATATGGACGTTGCTGATG 57.367 30.769 0.00 0.00 0.00 3.07
655 658 6.751514 TTATATGGACGTTGCTGATGTTTT 57.248 33.333 0.00 0.00 0.00 2.43
677 680 1.557651 TTTTGCGGGTTAAACGTTGC 58.442 45.000 0.00 0.00 0.00 4.17
681 684 0.519961 GCGGGTTAAACGTTGCTGAT 59.480 50.000 0.00 0.00 0.00 2.90
692 695 3.084039 ACGTTGCTGATGTTTGATCCAT 58.916 40.909 0.00 0.00 0.00 3.41
693 696 3.119743 ACGTTGCTGATGTTTGATCCATG 60.120 43.478 0.00 0.00 0.00 3.66
701 720 6.255020 GCTGATGTTTGATCCATGTCAAAATC 59.745 38.462 11.77 14.72 46.31 2.17
731 750 9.995003 ATAAGCACAAATAAATCAAAGACCAAA 57.005 25.926 0.00 0.00 0.00 3.28
742 761 5.982890 TCAAAGACCAAAGATTCATTCCC 57.017 39.130 0.00 0.00 0.00 3.97
752 771 2.439507 AGATTCATTCCCCGTGCATAGT 59.560 45.455 0.00 0.00 0.00 2.12
757 776 5.554437 TCATTCCCCGTGCATAGTAATTA 57.446 39.130 0.00 0.00 0.00 1.40
758 777 6.121776 TCATTCCCCGTGCATAGTAATTAT 57.878 37.500 0.00 0.00 0.00 1.28
759 778 7.247456 TCATTCCCCGTGCATAGTAATTATA 57.753 36.000 0.00 0.00 0.00 0.98
760 779 7.857456 TCATTCCCCGTGCATAGTAATTATAT 58.143 34.615 0.00 0.00 0.00 0.86
761 780 8.983789 TCATTCCCCGTGCATAGTAATTATATA 58.016 33.333 0.00 0.00 0.00 0.86
762 781 9.778741 CATTCCCCGTGCATAGTAATTATATAT 57.221 33.333 0.00 0.00 0.00 0.86
799 818 8.897752 AGATCATATACAAAAAGGCAAACTCTC 58.102 33.333 0.00 0.00 0.00 3.20
805 824 5.445964 ACAAAAAGGCAAACTCTCCTAGAA 58.554 37.500 0.00 0.00 31.24 2.10
808 827 6.825944 AAAAGGCAAACTCTCCTAGAATTC 57.174 37.500 0.00 0.00 31.24 2.17
809 828 5.505181 AAGGCAAACTCTCCTAGAATTCA 57.495 39.130 8.44 0.00 31.24 2.57
810 829 4.837972 AGGCAAACTCTCCTAGAATTCAC 58.162 43.478 8.44 0.00 0.00 3.18
859 881 6.385649 ACAGTTTGCCTCTAAATTCGAAAA 57.614 33.333 0.00 0.00 0.00 2.29
910 932 4.096003 AGCCCACCGCACGCTTAT 62.096 61.111 0.00 0.00 41.38 1.73
922 944 1.224592 CGCTTATCCAAGGCCCAGT 59.775 57.895 0.00 0.00 31.96 4.00
1144 1218 3.656243 TACGACCAGCGCGACGAAG 62.656 63.158 12.10 7.68 46.04 3.79
1218 1292 0.395724 TCTCGCTGTCCTCCTGCATA 60.396 55.000 0.00 0.00 37.85 3.14
1371 1481 4.131088 GCTGGTCGACCCCGTCTC 62.131 72.222 31.19 10.17 37.05 3.36
1372 1482 2.361357 CTGGTCGACCCCGTCTCT 60.361 66.667 31.19 0.00 37.05 3.10
1420 1530 2.450609 ACGACGCCAAGTTCTACAAT 57.549 45.000 0.00 0.00 0.00 2.71
1481 1591 5.832539 TCTTTCTCACCAATTCCTCTCTT 57.167 39.130 0.00 0.00 0.00 2.85
1485 1595 5.567037 TCTCACCAATTCCTCTCTTTTGA 57.433 39.130 0.00 0.00 0.00 2.69
1499 1609 1.545582 CTTTTGATGCCGTGGGATTGT 59.454 47.619 0.00 0.00 0.00 2.71
1653 1770 4.640789 AGGTAATGTACAAGAGCTCTCG 57.359 45.455 18.55 8.81 34.09 4.04
1795 3772 5.244785 CACATTCAGCTTCTTGTGCATAT 57.755 39.130 6.71 0.00 33.78 1.78
1812 3789 7.960262 TGTGCATATTCTCAGTCTCATCTTAT 58.040 34.615 0.00 0.00 0.00 1.73
1813 3790 9.082313 TGTGCATATTCTCAGTCTCATCTTATA 57.918 33.333 0.00 0.00 0.00 0.98
1913 3890 9.234384 GAGCATGAATGAAATCTAAATCAACAG 57.766 33.333 0.00 0.00 0.00 3.16
1955 3932 6.759272 AGTTGTGCTCACTTCTATGAAACTA 58.241 36.000 1.47 0.00 28.67 2.24
1982 3959 4.973396 TGCTTTTCAGATGCTTTATGTCG 58.027 39.130 0.00 0.00 0.00 4.35
2011 3993 2.892852 CCCTGTGGCTTGATGAAAAAGA 59.107 45.455 0.00 0.00 0.00 2.52
2017 3999 7.092137 TGTGGCTTGATGAAAAAGATGATAG 57.908 36.000 0.00 0.00 0.00 2.08
2071 4053 5.779529 ATGAGTGCAGAGTGAAACAAATT 57.220 34.783 0.00 0.00 41.43 1.82
2265 4288 2.676839 GGACATGCAGATCTGACAGTTG 59.323 50.000 27.04 18.94 0.00 3.16
2415 4438 6.054860 ACAGGTCAGTACTTCATATTTGCT 57.945 37.500 0.00 0.00 0.00 3.91
2443 4466 5.581126 TCACACTGTTTGAAGAAAGCAAT 57.419 34.783 0.00 0.00 0.00 3.56
2474 4497 2.304180 AGCCTCTTATGTGCAGTCTGTT 59.696 45.455 0.93 0.00 0.00 3.16
2757 4781 0.972134 TGCTTGAGGAGGTGTCTGAG 59.028 55.000 0.00 0.00 0.00 3.35
2768 4792 3.851098 AGGTGTCTGAGAATAGTTTCGC 58.149 45.455 0.00 0.00 36.93 4.70
2856 4880 3.113322 GCATAGTATCGCAGTTCGTGAA 58.887 45.455 0.00 0.00 37.76 3.18
2935 4974 6.194796 TGAGCTATTAATGGACAAACTTGC 57.805 37.500 2.52 0.00 0.00 4.01
2970 5010 3.309296 GGTAACTGGATCAGAGGATGGA 58.691 50.000 1.59 0.00 35.18 3.41
3079 5119 5.783360 TCTTCCAGTTCCTAGTGGTATTGAA 59.217 40.000 0.00 0.00 44.06 2.69
3203 5243 7.275697 TGCAACATGCTAACAAAATTTATCG 57.724 32.000 3.78 0.00 45.31 2.92
3235 5275 9.489084 GTTCAATTTTGGTAGGCTTTTATTCTT 57.511 29.630 0.00 0.00 0.00 2.52
3395 5435 1.027357 GCTGGTATTGGGCACATCTG 58.973 55.000 0.00 0.00 0.00 2.90
3578 5619 2.079925 GTGGTGCTCCTGTTCAAGATC 58.920 52.381 6.34 0.00 34.23 2.75
3619 5660 6.701340 TCAAGTAAGTGCTGATCTGTACATT 58.299 36.000 19.90 13.83 0.00 2.71
3663 5704 6.351626 GCCCAAGTAAGACCTTTAGTTAGCTA 60.352 42.308 0.00 0.00 0.00 3.32
3684 5725 6.824196 AGCTAGCTAGGTTGGAATAAAACTTC 59.176 38.462 17.69 0.00 0.00 3.01
3745 5786 6.872547 AGTTTTATAGACGAACACTTCTTCCC 59.127 38.462 0.00 0.00 0.00 3.97
3795 5836 9.676861 AATAGGACAGTAACTAAAACCCATAAC 57.323 33.333 0.00 0.00 0.00 1.89
3796 5837 7.081857 AGGACAGTAACTAAAACCCATAACA 57.918 36.000 0.00 0.00 0.00 2.41
3797 5838 6.938596 AGGACAGTAACTAAAACCCATAACAC 59.061 38.462 0.00 0.00 0.00 3.32
3798 5839 6.149973 GGACAGTAACTAAAACCCATAACACC 59.850 42.308 0.00 0.00 0.00 4.16
3799 5840 6.603224 ACAGTAACTAAAACCCATAACACCA 58.397 36.000 0.00 0.00 0.00 4.17
3800 5841 7.061688 ACAGTAACTAAAACCCATAACACCAA 58.938 34.615 0.00 0.00 0.00 3.67
3829 5870 5.641777 ACCGAGAACACGTTTAGTAAAAC 57.358 39.130 0.00 0.00 41.36 2.43
3937 5978 5.358298 CAGTAAACTGGTAAGGTTGCTTC 57.642 43.478 2.01 0.00 42.74 3.86
3938 5979 4.215613 CAGTAAACTGGTAAGGTTGCTTCC 59.784 45.833 2.01 0.00 42.74 3.46
3939 5980 2.287977 AACTGGTAAGGTTGCTTCCC 57.712 50.000 0.00 0.00 0.00 3.97
3940 5981 1.446016 ACTGGTAAGGTTGCTTCCCT 58.554 50.000 0.00 0.00 0.00 4.20
3941 5982 1.351350 ACTGGTAAGGTTGCTTCCCTC 59.649 52.381 0.00 0.00 0.00 4.30
3942 5983 1.351017 CTGGTAAGGTTGCTTCCCTCA 59.649 52.381 0.00 0.00 0.00 3.86
3943 5984 1.777878 TGGTAAGGTTGCTTCCCTCAA 59.222 47.619 0.00 0.00 0.00 3.02
3944 5985 2.175931 TGGTAAGGTTGCTTCCCTCAAA 59.824 45.455 0.00 0.00 0.00 2.69
3945 5986 3.227614 GGTAAGGTTGCTTCCCTCAAAA 58.772 45.455 0.00 0.00 0.00 2.44
3946 5987 3.639561 GGTAAGGTTGCTTCCCTCAAAAA 59.360 43.478 0.00 0.00 0.00 1.94
3974 6015 1.661341 AAGGTTGCTCGATGCTCATC 58.339 50.000 8.07 0.00 43.37 2.92
3989 6030 7.700322 GATGCTCATCGTTAGAAATAACTCA 57.300 36.000 0.00 0.00 0.00 3.41
4039 6080 7.806180 AGAAACATCCACTATAGTAATGCCTT 58.194 34.615 19.86 15.38 0.00 4.35
4050 6091 7.985752 ACTATAGTAATGCCTTGTAAACTGGTC 59.014 37.037 2.75 0.00 0.00 4.02
4059 6100 5.803470 GCCTTGTAAACTGGTCAGGTTATCT 60.803 44.000 11.10 0.00 42.01 1.98
4061 6102 7.391620 CCTTGTAAACTGGTCAGGTTATCTAA 58.608 38.462 11.10 7.12 42.01 2.10
4169 6210 1.202687 CCCATCATTAGAAGCGGCTCA 60.203 52.381 1.45 0.00 0.00 4.26
4183 6224 2.159254 GCGGCTCATCATTGGCTTAAAA 60.159 45.455 0.00 0.00 0.00 1.52
4201 6242 6.972901 GCTTAAAAGTGGACAGGCAATAATAC 59.027 38.462 0.00 0.00 0.00 1.89
4203 6244 6.515272 AAAAGTGGACAGGCAATAATACTG 57.485 37.500 0.00 0.00 38.19 2.74
4215 6256 6.013032 AGGCAATAATACTGGAGACATATGCT 60.013 38.462 1.58 0.70 41.51 3.79
4218 6259 7.173907 GCAATAATACTGGAGACATATGCTTGT 59.826 37.037 1.58 5.08 41.51 3.16
4325 6366 3.907894 TGGTTAAGGCGAACAACAATC 57.092 42.857 7.48 0.00 0.00 2.67
4340 6381 2.274542 ACAATCCCCACTGGTGTATGA 58.725 47.619 0.00 0.00 34.77 2.15
4350 6391 5.885352 CCCACTGGTGTATGATTTATCACAA 59.115 40.000 0.00 0.00 40.03 3.33
4357 6398 9.295825 TGGTGTATGATTTATCACAAAAGACTT 57.704 29.630 0.00 0.00 40.03 3.01
4358 6399 9.774742 GGTGTATGATTTATCACAAAAGACTTC 57.225 33.333 0.00 0.00 40.03 3.01
4361 6404 9.907576 GTATGATTTATCACAAAAGACTTCGAG 57.092 33.333 0.00 0.00 40.03 4.04
4372 6415 7.954248 CACAAAAGACTTCGAGATTTATCACTG 59.046 37.037 0.00 0.00 0.00 3.66
4587 6630 4.202441 AGTCTGTGGCTGGCAAATTATAG 58.798 43.478 5.14 0.00 0.00 1.31
4702 7492 7.511028 AGAAATACCCCATTGTTTTCACCTTAA 59.489 33.333 0.00 0.00 0.00 1.85
4703 7493 7.619512 AATACCCCATTGTTTTCACCTTAAA 57.380 32.000 0.00 0.00 0.00 1.52
4746 7536 7.611855 CCAGACTATTTATGTGAAAAAGGGAGT 59.388 37.037 0.00 0.00 0.00 3.85
4817 7607 3.889815 TGCTTCCAATAGCATGCTAACT 58.110 40.909 30.06 17.78 45.72 2.24
5054 7847 3.160269 CCAATATCTGGGGCTGGAAATC 58.840 50.000 0.00 0.00 42.17 2.17
5173 7966 3.944233 GCGTTTCGTTGCCGTGGT 61.944 61.111 0.00 0.00 35.01 4.16
5212 8005 0.716108 CCGAGTGTTGATGAAGCGTC 59.284 55.000 0.00 0.00 0.00 5.19
5213 8006 1.670087 CCGAGTGTTGATGAAGCGTCT 60.670 52.381 0.31 0.00 0.00 4.18
5379 8179 7.179338 TCCTTGTTATAGATATTCTCCTGGAGC 59.821 40.741 19.08 4.53 0.00 4.70
5383 8183 8.938883 TGTTATAGATATTCTCCTGGAGCTTTT 58.061 33.333 19.08 3.94 0.00 2.27
5391 8191 4.579869 TCTCCTGGAGCTTTTGATACAAC 58.420 43.478 19.08 0.00 0.00 3.32
5394 8194 3.420893 CTGGAGCTTTTGATACAACCCA 58.579 45.455 0.00 0.00 0.00 4.51
5408 8208 6.947733 TGATACAACCCATCTCAATCTGTTTT 59.052 34.615 0.00 0.00 0.00 2.43
5409 8209 5.458041 ACAACCCATCTCAATCTGTTTTG 57.542 39.130 0.00 0.00 0.00 2.44
5412 8212 3.256631 ACCCATCTCAATCTGTTTTGCAC 59.743 43.478 0.00 0.00 0.00 4.57
5413 8213 3.495193 CCATCTCAATCTGTTTTGCACG 58.505 45.455 0.00 0.00 0.00 5.34
5415 8215 4.539870 CATCTCAATCTGTTTTGCACGTT 58.460 39.130 0.00 0.00 0.00 3.99
5420 8220 6.470877 TCTCAATCTGTTTTGCACGTTTTAAC 59.529 34.615 0.00 0.00 0.00 2.01
5426 8226 6.641314 TCTGTTTTGCACGTTTTAACTTTTGA 59.359 30.769 0.00 0.00 0.00 2.69
5428 8228 7.797819 TGTTTTGCACGTTTTAACTTTTGAAT 58.202 26.923 0.00 0.00 0.00 2.57
5456 8260 2.147150 GAAAGAGTCACTCCTGCAACC 58.853 52.381 0.00 0.00 0.00 3.77
5459 8263 1.203187 AGAGTCACTCCTGCAACCCTA 60.203 52.381 0.00 0.00 0.00 3.53
5460 8264 0.977395 AGTCACTCCTGCAACCCTAC 59.023 55.000 0.00 0.00 0.00 3.18
5461 8265 0.977395 GTCACTCCTGCAACCCTACT 59.023 55.000 0.00 0.00 0.00 2.57
5462 8266 0.976641 TCACTCCTGCAACCCTACTG 59.023 55.000 0.00 0.00 0.00 2.74
5463 8267 0.674895 CACTCCTGCAACCCTACTGC 60.675 60.000 0.00 0.00 40.35 4.40
5464 8268 0.838122 ACTCCTGCAACCCTACTGCT 60.838 55.000 0.00 0.00 40.59 4.24
5466 8270 0.036732 TCCTGCAACCCTACTGCTTG 59.963 55.000 0.00 0.00 40.59 4.01
5467 8271 0.036732 CCTGCAACCCTACTGCTTGA 59.963 55.000 0.00 0.00 40.59 3.02
5468 8272 1.340405 CCTGCAACCCTACTGCTTGAT 60.340 52.381 0.00 0.00 40.59 2.57
5469 8273 1.741706 CTGCAACCCTACTGCTTGATG 59.258 52.381 0.00 0.00 40.59 3.07
5470 8274 1.098050 GCAACCCTACTGCTTGATGG 58.902 55.000 0.00 0.00 36.84 3.51
5472 8276 2.359900 CAACCCTACTGCTTGATGGAC 58.640 52.381 0.00 0.00 0.00 4.02
5477 8281 3.560025 CCCTACTGCTTGATGGACTTTGT 60.560 47.826 0.00 0.00 0.00 2.83
5565 8374 2.746269 CCACCAAATTGTGCTCAGTTG 58.254 47.619 0.00 2.93 34.85 3.16
5633 8442 6.575162 ACAAAGAACCAAGTTATAGGCTTG 57.425 37.500 0.00 10.44 42.00 4.01
5635 8444 4.576330 AGAACCAAGTTATAGGCTTGCT 57.424 40.909 11.44 4.05 41.27 3.91
5720 8529 9.502091 AGAAGACAACAAAGTTACATATGCTTA 57.498 29.630 1.58 0.00 0.00 3.09
5790 8599 3.493129 CCGTTCAAGTCGACTGATTTTGA 59.507 43.478 20.85 15.64 32.28 2.69
5915 8724 9.592196 ACTAAAACCCTTCCTATATATACACGA 57.408 33.333 0.00 0.00 0.00 4.35
5966 8779 2.762327 CACCAGCAAGGCTTCCAAATAT 59.238 45.455 0.00 0.00 43.14 1.28
6021 8834 5.211973 TCCTACTCCACAAAGCAGATATCT 58.788 41.667 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.173907 CCAGATGACCAAATCACCATATTAGTC 59.826 40.741 0.00 0.00 41.24 2.59
1 2 7.000472 CCAGATGACCAAATCACCATATTAGT 59.000 38.462 0.00 0.00 41.24 2.24
2 3 7.000472 ACCAGATGACCAAATCACCATATTAG 59.000 38.462 0.00 0.00 41.24 1.73
3 4 6.910191 ACCAGATGACCAAATCACCATATTA 58.090 36.000 0.00 0.00 41.24 0.98
4 5 5.769835 ACCAGATGACCAAATCACCATATT 58.230 37.500 0.00 0.00 41.24 1.28
5 6 5.133322 AGACCAGATGACCAAATCACCATAT 59.867 40.000 0.00 0.00 41.24 1.78
6 7 4.474651 AGACCAGATGACCAAATCACCATA 59.525 41.667 0.00 0.00 41.24 2.74
7 8 3.267812 AGACCAGATGACCAAATCACCAT 59.732 43.478 0.00 0.00 41.24 3.55
8 9 2.644299 AGACCAGATGACCAAATCACCA 59.356 45.455 0.00 0.00 41.24 4.17
9 10 3.356529 AGACCAGATGACCAAATCACC 57.643 47.619 0.00 0.00 41.24 4.02
10 11 5.582665 GTCTAAGACCAGATGACCAAATCAC 59.417 44.000 0.00 0.00 41.24 3.06
11 12 5.485353 AGTCTAAGACCAGATGACCAAATCA 59.515 40.000 0.00 0.00 35.88 2.57
12 13 5.983540 AGTCTAAGACCAGATGACCAAATC 58.016 41.667 0.00 0.00 32.18 2.17
13 14 5.723887 AGAGTCTAAGACCAGATGACCAAAT 59.276 40.000 0.00 0.00 32.18 2.32
14 15 5.087323 AGAGTCTAAGACCAGATGACCAAA 58.913 41.667 0.00 0.00 32.18 3.28
15 16 4.678256 AGAGTCTAAGACCAGATGACCAA 58.322 43.478 0.00 0.00 32.18 3.67
16 17 4.323569 AGAGTCTAAGACCAGATGACCA 57.676 45.455 0.00 0.00 32.18 4.02
17 18 5.221165 GCTAAGAGTCTAAGACCAGATGACC 60.221 48.000 0.00 0.00 32.18 4.02
18 19 5.358442 TGCTAAGAGTCTAAGACCAGATGAC 59.642 44.000 0.00 0.00 32.18 3.06
19 20 5.510430 TGCTAAGAGTCTAAGACCAGATGA 58.490 41.667 0.00 0.00 32.18 2.92
20 21 5.843673 TGCTAAGAGTCTAAGACCAGATG 57.156 43.478 0.00 0.00 32.18 2.90
21 22 5.163457 GCTTGCTAAGAGTCTAAGACCAGAT 60.163 44.000 4.83 0.00 32.18 2.90
22 23 4.158764 GCTTGCTAAGAGTCTAAGACCAGA 59.841 45.833 4.83 0.00 32.18 3.86
23 24 4.081972 TGCTTGCTAAGAGTCTAAGACCAG 60.082 45.833 4.83 0.00 32.18 4.00
24 25 3.832490 TGCTTGCTAAGAGTCTAAGACCA 59.168 43.478 4.83 0.00 32.18 4.02
25 26 4.457834 TGCTTGCTAAGAGTCTAAGACC 57.542 45.455 4.83 0.00 32.18 3.85
26 27 4.737765 CGATGCTTGCTAAGAGTCTAAGAC 59.262 45.833 4.83 0.00 0.00 3.01
27 28 4.640647 TCGATGCTTGCTAAGAGTCTAAGA 59.359 41.667 4.83 0.00 0.00 2.10
28 29 4.926244 TCGATGCTTGCTAAGAGTCTAAG 58.074 43.478 0.00 0.00 0.00 2.18
29 30 4.983671 TCGATGCTTGCTAAGAGTCTAA 57.016 40.909 0.00 0.00 0.00 2.10
30 31 6.207614 ACATATCGATGCTTGCTAAGAGTCTA 59.792 38.462 8.54 0.00 36.43 2.59
31 32 5.010516 ACATATCGATGCTTGCTAAGAGTCT 59.989 40.000 8.54 0.00 36.43 3.24
32 33 5.226396 ACATATCGATGCTTGCTAAGAGTC 58.774 41.667 8.54 0.00 36.43 3.36
33 34 5.207110 ACATATCGATGCTTGCTAAGAGT 57.793 39.130 8.54 0.00 36.43 3.24
34 35 5.464722 ACAACATATCGATGCTTGCTAAGAG 59.535 40.000 8.54 0.00 36.43 2.85
35 36 5.359756 ACAACATATCGATGCTTGCTAAGA 58.640 37.500 8.54 0.00 36.43 2.10
36 37 5.663795 ACAACATATCGATGCTTGCTAAG 57.336 39.130 8.54 0.00 36.43 2.18
37 38 5.817296 AGAACAACATATCGATGCTTGCTAA 59.183 36.000 8.54 0.00 36.43 3.09
38 39 5.359756 AGAACAACATATCGATGCTTGCTA 58.640 37.500 8.54 0.00 36.43 3.49
39 40 4.194640 AGAACAACATATCGATGCTTGCT 58.805 39.130 8.54 0.00 36.43 3.91
40 41 4.542662 AGAACAACATATCGATGCTTGC 57.457 40.909 8.54 0.00 36.43 4.01
41 42 4.731961 GCAAGAACAACATATCGATGCTTG 59.268 41.667 8.54 8.82 36.43 4.01
42 43 4.395854 TGCAAGAACAACATATCGATGCTT 59.604 37.500 8.54 0.00 36.43 3.91
43 44 3.940852 TGCAAGAACAACATATCGATGCT 59.059 39.130 8.54 0.00 36.43 3.79
44 45 4.277257 TGCAAGAACAACATATCGATGC 57.723 40.909 8.54 0.00 36.43 3.91
45 46 7.699391 AGAAATTGCAAGAACAACATATCGATG 59.301 33.333 8.54 0.00 39.16 3.84
46 47 7.765307 AGAAATTGCAAGAACAACATATCGAT 58.235 30.769 4.94 2.16 31.03 3.59
47 48 7.144722 AGAAATTGCAAGAACAACATATCGA 57.855 32.000 4.94 0.00 31.03 3.59
48 49 7.801547 AAGAAATTGCAAGAACAACATATCG 57.198 32.000 4.94 0.00 31.03 2.92
53 54 9.429359 TCTTTTTAAGAAATTGCAAGAACAACA 57.571 25.926 4.94 0.00 33.83 3.33
93 94 9.700831 AAGCCTACTTGTTTTTAGGATTATGAT 57.299 29.630 0.00 0.00 41.31 2.45
94 95 8.956426 CAAGCCTACTTGTTTTTAGGATTATGA 58.044 33.333 0.00 0.00 46.84 2.15
110 111 1.272769 GACGGAGACACAAGCCTACTT 59.727 52.381 0.00 0.00 36.19 2.24
111 112 0.889306 GACGGAGACACAAGCCTACT 59.111 55.000 0.00 0.00 0.00 2.57
112 113 0.889306 AGACGGAGACACAAGCCTAC 59.111 55.000 0.00 0.00 0.00 3.18
113 114 1.174783 GAGACGGAGACACAAGCCTA 58.825 55.000 0.00 0.00 0.00 3.93
114 115 1.536943 GGAGACGGAGACACAAGCCT 61.537 60.000 0.00 0.00 0.00 4.58
115 116 1.079750 GGAGACGGAGACACAAGCC 60.080 63.158 0.00 0.00 0.00 4.35
116 117 1.174783 TAGGAGACGGAGACACAAGC 58.825 55.000 0.00 0.00 0.00 4.01
117 118 3.936372 TTTAGGAGACGGAGACACAAG 57.064 47.619 0.00 0.00 0.00 3.16
118 119 3.893200 TCTTTTAGGAGACGGAGACACAA 59.107 43.478 0.00 0.00 0.00 3.33
119 120 3.493334 TCTTTTAGGAGACGGAGACACA 58.507 45.455 0.00 0.00 0.00 3.72
120 121 4.217983 TCTTCTTTTAGGAGACGGAGACAC 59.782 45.833 0.00 0.00 0.00 3.67
121 122 4.404640 TCTTCTTTTAGGAGACGGAGACA 58.595 43.478 0.00 0.00 0.00 3.41
122 123 5.358725 AGATCTTCTTTTAGGAGACGGAGAC 59.641 44.000 0.00 0.00 0.00 3.36
123 124 5.511363 AGATCTTCTTTTAGGAGACGGAGA 58.489 41.667 0.00 0.00 0.00 3.71
124 125 5.845391 AGATCTTCTTTTAGGAGACGGAG 57.155 43.478 0.00 0.00 0.00 4.63
125 126 8.991783 TTATAGATCTTCTTTTAGGAGACGGA 57.008 34.615 0.00 0.00 0.00 4.69
152 153 7.323049 TGTACCGTTTGAATTGAGAGAAAAA 57.677 32.000 0.00 0.00 0.00 1.94
153 154 6.928979 TGTACCGTTTGAATTGAGAGAAAA 57.071 33.333 0.00 0.00 0.00 2.29
154 155 6.928979 TTGTACCGTTTGAATTGAGAGAAA 57.071 33.333 0.00 0.00 0.00 2.52
155 156 6.928979 TTTGTACCGTTTGAATTGAGAGAA 57.071 33.333 0.00 0.00 0.00 2.87
156 157 6.928979 TTTTGTACCGTTTGAATTGAGAGA 57.071 33.333 0.00 0.00 0.00 3.10
157 158 8.479280 CAAATTTTGTACCGTTTGAATTGAGAG 58.521 33.333 0.78 0.00 34.38 3.20
158 159 8.191446 TCAAATTTTGTACCGTTTGAATTGAGA 58.809 29.630 8.89 0.00 37.56 3.27
159 160 8.265998 GTCAAATTTTGTACCGTTTGAATTGAG 58.734 33.333 8.89 0.00 40.85 3.02
160 161 7.222999 GGTCAAATTTTGTACCGTTTGAATTGA 59.777 33.333 8.89 0.00 40.85 2.57
161 162 7.010552 TGGTCAAATTTTGTACCGTTTGAATTG 59.989 33.333 17.94 0.00 40.85 2.32
162 163 7.042335 TGGTCAAATTTTGTACCGTTTGAATT 58.958 30.769 17.94 0.00 40.85 2.17
163 164 6.574350 TGGTCAAATTTTGTACCGTTTGAAT 58.426 32.000 17.94 0.00 40.85 2.57
164 165 5.962433 TGGTCAAATTTTGTACCGTTTGAA 58.038 33.333 17.94 5.12 40.85 2.69
165 166 5.578005 TGGTCAAATTTTGTACCGTTTGA 57.422 34.783 17.94 7.53 38.01 2.69
166 167 6.648725 TTTGGTCAAATTTTGTACCGTTTG 57.351 33.333 17.94 0.00 35.18 2.93
167 168 7.851387 ATTTTGGTCAAATTTTGTACCGTTT 57.149 28.000 17.94 7.34 35.18 3.60
168 169 7.851387 AATTTTGGTCAAATTTTGTACCGTT 57.149 28.000 17.94 11.41 41.57 4.44
199 200 9.930693 TCTTGTATTGTGGTTGTTTAAAGTTTT 57.069 25.926 0.00 0.00 0.00 2.43
208 209 9.344772 TGTTACTAATCTTGTATTGTGGTTGTT 57.655 29.630 0.00 0.00 0.00 2.83
209 210 8.780249 GTGTTACTAATCTTGTATTGTGGTTGT 58.220 33.333 0.00 0.00 0.00 3.32
210 211 8.999431 AGTGTTACTAATCTTGTATTGTGGTTG 58.001 33.333 0.00 0.00 0.00 3.77
290 291 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
291 292 6.483307 TGACTTAGATGTGCAATACTTATGGC 59.517 38.462 0.00 0.00 33.16 4.40
292 293 8.613060 ATGACTTAGATGTGCAATACTTATGG 57.387 34.615 0.00 0.00 0.00 2.74
296 297 9.265901 GACATATGACTTAGATGTGCAATACTT 57.734 33.333 10.38 0.00 41.09 2.24
297 298 8.424133 TGACATATGACTTAGATGTGCAATACT 58.576 33.333 10.38 0.00 41.09 2.12
298 299 8.593492 TGACATATGACTTAGATGTGCAATAC 57.407 34.615 10.38 0.00 41.09 1.89
299 300 9.428097 GATGACATATGACTTAGATGTGCAATA 57.572 33.333 10.38 0.00 41.09 1.90
300 301 7.117379 CGATGACATATGACTTAGATGTGCAAT 59.883 37.037 10.38 0.00 41.09 3.56
301 302 6.421801 CGATGACATATGACTTAGATGTGCAA 59.578 38.462 10.38 0.00 41.09 4.08
302 303 5.922544 CGATGACATATGACTTAGATGTGCA 59.077 40.000 10.38 0.00 41.09 4.57
303 304 6.152379 TCGATGACATATGACTTAGATGTGC 58.848 40.000 10.38 0.00 41.09 4.57
304 305 8.242739 AGATCGATGACATATGACTTAGATGTG 58.757 37.037 10.38 0.00 41.09 3.21
305 306 8.347004 AGATCGATGACATATGACTTAGATGT 57.653 34.615 10.38 8.52 43.56 3.06
308 309 9.284968 TGTAAGATCGATGACATATGACTTAGA 57.715 33.333 10.38 7.91 0.00 2.10
311 312 9.201127 CAATGTAAGATCGATGACATATGACTT 57.799 33.333 10.38 1.02 32.31 3.01
312 313 8.579863 TCAATGTAAGATCGATGACATATGACT 58.420 33.333 10.38 0.00 32.31 3.41
313 314 8.748380 TCAATGTAAGATCGATGACATATGAC 57.252 34.615 10.38 3.62 32.31 3.06
314 315 8.796475 TCTCAATGTAAGATCGATGACATATGA 58.204 33.333 10.38 13.27 32.31 2.15
315 316 8.976986 TCTCAATGTAAGATCGATGACATATG 57.023 34.615 0.54 0.00 32.31 1.78
317 318 9.631452 GAATCTCAATGTAAGATCGATGACATA 57.369 33.333 0.54 0.00 32.29 2.29
318 319 7.328005 CGAATCTCAATGTAAGATCGATGACAT 59.672 37.037 0.54 7.00 32.29 3.06
319 320 6.638468 CGAATCTCAATGTAAGATCGATGACA 59.362 38.462 0.54 4.65 32.29 3.58
320 321 6.638873 ACGAATCTCAATGTAAGATCGATGAC 59.361 38.462 0.54 0.00 32.29 3.06
321 322 6.739112 ACGAATCTCAATGTAAGATCGATGA 58.261 36.000 0.54 0.00 32.29 2.92
322 323 6.999956 ACGAATCTCAATGTAAGATCGATG 57.000 37.500 0.54 0.00 32.29 3.84
323 324 8.515414 TCATACGAATCTCAATGTAAGATCGAT 58.485 33.333 0.00 0.00 32.29 3.59
324 325 7.871853 TCATACGAATCTCAATGTAAGATCGA 58.128 34.615 0.00 0.00 32.29 3.59
325 326 8.507470 TTCATACGAATCTCAATGTAAGATCG 57.493 34.615 0.00 0.00 32.29 3.69
368 369 9.683069 GTGAATCAAGCATAAAGAGAAAAAGAA 57.317 29.630 0.00 0.00 0.00 2.52
369 370 9.071276 AGTGAATCAAGCATAAAGAGAAAAAGA 57.929 29.630 0.00 0.00 0.00 2.52
370 371 9.339492 GAGTGAATCAAGCATAAAGAGAAAAAG 57.661 33.333 0.00 0.00 0.00 2.27
371 372 8.849168 TGAGTGAATCAAGCATAAAGAGAAAAA 58.151 29.630 0.00 0.00 34.02 1.94
372 373 8.292448 GTGAGTGAATCAAGCATAAAGAGAAAA 58.708 33.333 0.00 0.00 40.43 2.29
373 374 7.663081 AGTGAGTGAATCAAGCATAAAGAGAAA 59.337 33.333 0.00 0.00 40.43 2.52
374 375 7.164122 AGTGAGTGAATCAAGCATAAAGAGAA 58.836 34.615 0.00 0.00 40.43 2.87
375 376 6.705302 AGTGAGTGAATCAAGCATAAAGAGA 58.295 36.000 0.00 0.00 40.43 3.10
376 377 6.981762 AGTGAGTGAATCAAGCATAAAGAG 57.018 37.500 0.00 0.00 40.43 2.85
377 378 8.314021 TCTAAGTGAGTGAATCAAGCATAAAGA 58.686 33.333 0.00 0.00 40.43 2.52
378 379 8.484641 TCTAAGTGAGTGAATCAAGCATAAAG 57.515 34.615 0.00 0.00 40.43 1.85
379 380 8.886719 CATCTAAGTGAGTGAATCAAGCATAAA 58.113 33.333 0.00 0.00 40.43 1.40
380 381 8.043113 ACATCTAAGTGAGTGAATCAAGCATAA 58.957 33.333 0.00 0.00 40.43 1.90
381 382 7.493645 CACATCTAAGTGAGTGAATCAAGCATA 59.506 37.037 0.00 0.00 42.05 3.14
382 383 6.315642 CACATCTAAGTGAGTGAATCAAGCAT 59.684 38.462 0.00 0.00 42.05 3.79
383 384 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
384 385 5.447010 GCACATCTAAGTGAGTGAATCAAGC 60.447 44.000 0.00 0.00 42.05 4.01
385 386 5.640783 TGCACATCTAAGTGAGTGAATCAAG 59.359 40.000 0.00 0.00 42.05 3.02
386 387 5.550290 TGCACATCTAAGTGAGTGAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
387 388 5.151297 TGCACATCTAAGTGAGTGAATCA 57.849 39.130 0.00 0.00 42.05 2.57
388 389 6.674694 ATTGCACATCTAAGTGAGTGAATC 57.325 37.500 0.00 0.00 42.05 2.52
389 390 8.743085 ATTATTGCACATCTAAGTGAGTGAAT 57.257 30.769 0.00 0.00 42.05 2.57
390 391 8.565896 AATTATTGCACATCTAAGTGAGTGAA 57.434 30.769 0.00 0.00 42.05 3.18
391 392 9.317936 CTAATTATTGCACATCTAAGTGAGTGA 57.682 33.333 0.00 0.00 42.05 3.41
392 393 9.317936 TCTAATTATTGCACATCTAAGTGAGTG 57.682 33.333 0.00 0.00 42.05 3.51
393 394 9.539825 CTCTAATTATTGCACATCTAAGTGAGT 57.460 33.333 0.00 0.00 42.05 3.41
394 395 8.494347 GCTCTAATTATTGCACATCTAAGTGAG 58.506 37.037 0.00 0.00 42.05 3.51
395 396 7.986889 TGCTCTAATTATTGCACATCTAAGTGA 59.013 33.333 8.01 0.00 42.05 3.41
396 397 8.146479 TGCTCTAATTATTGCACATCTAAGTG 57.854 34.615 8.01 0.00 42.37 3.16
406 407 8.543862 CATCTAGATGTGCTCTAATTATTGCA 57.456 34.615 22.42 8.01 36.02 4.08
422 423 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
423 424 3.916035 TGTGTCTAGGGCACATCTAGAT 58.084 45.455 14.22 0.00 43.25 1.98
424 425 3.382083 TGTGTCTAGGGCACATCTAGA 57.618 47.619 14.22 0.00 41.32 2.43
489 490 6.458615 GCACAAAAGTTACCGAGTTTTAGGAA 60.459 38.462 0.00 0.00 38.52 3.36
490 491 5.007921 GCACAAAAGTTACCGAGTTTTAGGA 59.992 40.000 0.00 0.00 38.52 2.94
491 492 5.209977 GCACAAAAGTTACCGAGTTTTAGG 58.790 41.667 0.00 0.00 38.52 2.69
492 493 5.812652 TGCACAAAAGTTACCGAGTTTTAG 58.187 37.500 0.00 0.00 38.52 1.85
493 494 5.731126 GCTGCACAAAAGTTACCGAGTTTTA 60.731 40.000 0.00 0.00 38.52 1.52
497 498 1.602377 GCTGCACAAAAGTTACCGAGT 59.398 47.619 0.00 0.00 0.00 4.18
498 499 1.601903 TGCTGCACAAAAGTTACCGAG 59.398 47.619 0.00 0.00 0.00 4.63
500 501 2.704725 ATGCTGCACAAAAGTTACCG 57.295 45.000 3.57 0.00 0.00 4.02
502 503 6.129457 CGAGTTAAATGCTGCACAAAAGTTAC 60.129 38.462 3.57 0.00 0.00 2.50
503 504 5.912396 CGAGTTAAATGCTGCACAAAAGTTA 59.088 36.000 3.57 0.00 0.00 2.24
506 507 4.536065 TCGAGTTAAATGCTGCACAAAAG 58.464 39.130 3.57 0.00 0.00 2.27
507 508 4.274705 TCTCGAGTTAAATGCTGCACAAAA 59.725 37.500 13.13 0.00 0.00 2.44
508 509 3.812609 TCTCGAGTTAAATGCTGCACAAA 59.187 39.130 13.13 0.00 0.00 2.83
509 510 3.186409 GTCTCGAGTTAAATGCTGCACAA 59.814 43.478 13.13 0.00 0.00 3.33
511 512 2.736721 TGTCTCGAGTTAAATGCTGCAC 59.263 45.455 13.13 0.00 0.00 4.57
514 515 5.990408 ACTTTTGTCTCGAGTTAAATGCTG 58.010 37.500 13.13 8.23 0.00 4.41
519 520 8.715088 GGCTTATAACTTTTGTCTCGAGTTAAA 58.285 33.333 13.13 11.88 38.80 1.52
522 523 6.465084 AGGCTTATAACTTTTGTCTCGAGTT 58.535 36.000 13.13 0.49 37.40 3.01
524 525 8.649973 AATAGGCTTATAACTTTTGTCTCGAG 57.350 34.615 5.93 5.93 0.00 4.04
526 527 8.649973 AGAATAGGCTTATAACTTTTGTCTCG 57.350 34.615 0.00 0.00 0.00 4.04
582 585 9.462606 CAAATCCTCTTACTAAATTAGGTGGTT 57.537 33.333 4.92 0.00 0.00 3.67
584 587 9.681062 TTCAAATCCTCTTACTAAATTAGGTGG 57.319 33.333 4.92 0.00 0.00 4.61
622 625 8.188139 CAGCAACGTCCATATAAAAATTTACCT 58.812 33.333 0.00 0.00 0.00 3.08
629 632 6.751514 ACATCAGCAACGTCCATATAAAAA 57.248 33.333 0.00 0.00 0.00 1.94
630 633 6.751514 AACATCAGCAACGTCCATATAAAA 57.248 33.333 0.00 0.00 0.00 1.52
631 634 6.751514 AAACATCAGCAACGTCCATATAAA 57.248 33.333 0.00 0.00 0.00 1.40
632 635 6.751514 AAAACATCAGCAACGTCCATATAA 57.248 33.333 0.00 0.00 0.00 0.98
633 636 6.751514 AAAAACATCAGCAACGTCCATATA 57.248 33.333 0.00 0.00 0.00 0.86
634 637 5.643379 AAAAACATCAGCAACGTCCATAT 57.357 34.783 0.00 0.00 0.00 1.78
657 660 1.925185 GCAACGTTTAACCCGCAAAAA 59.075 42.857 0.00 0.00 0.00 1.94
659 662 0.739561 AGCAACGTTTAACCCGCAAA 59.260 45.000 0.00 0.00 0.00 3.68
661 664 0.814410 TCAGCAACGTTTAACCCGCA 60.814 50.000 0.00 0.00 0.00 5.69
663 666 1.533731 ACATCAGCAACGTTTAACCCG 59.466 47.619 0.00 0.00 0.00 5.28
664 667 3.636282 AACATCAGCAACGTTTAACCC 57.364 42.857 0.00 0.00 0.00 4.11
665 668 4.602995 TCAAACATCAGCAACGTTTAACC 58.397 39.130 0.00 0.00 31.85 2.85
668 671 4.517075 TGGATCAAACATCAGCAACGTTTA 59.483 37.500 0.00 0.00 31.85 2.01
669 672 3.317711 TGGATCAAACATCAGCAACGTTT 59.682 39.130 0.00 0.00 33.24 3.60
672 675 3.119743 ACATGGATCAAACATCAGCAACG 60.120 43.478 0.00 0.00 0.00 4.10
673 676 4.082625 TGACATGGATCAAACATCAGCAAC 60.083 41.667 0.00 0.00 0.00 4.17
677 680 7.544622 AGATTTTGACATGGATCAAACATCAG 58.455 34.615 20.49 0.00 45.84 2.90
681 684 7.287512 TGAAGATTTTGACATGGATCAAACA 57.712 32.000 10.18 3.88 45.84 2.83
722 741 3.763897 CGGGGAATGAATCTTTGGTCTTT 59.236 43.478 0.00 0.00 0.00 2.52
725 744 2.423538 CACGGGGAATGAATCTTTGGTC 59.576 50.000 0.00 0.00 0.00 4.02
731 750 2.439507 ACTATGCACGGGGAATGAATCT 59.560 45.455 0.00 0.00 0.00 2.40
783 802 6.581171 ATTCTAGGAGAGTTTGCCTTTTTG 57.419 37.500 0.00 0.00 35.73 2.44
787 806 5.013599 AGTGAATTCTAGGAGAGTTTGCCTT 59.986 40.000 7.05 0.00 35.73 4.35
808 827 6.587608 AGAAGAGTTTGCAAGTTCAAAAAGTG 59.412 34.615 12.88 0.00 37.65 3.16
809 828 6.691508 AGAAGAGTTTGCAAGTTCAAAAAGT 58.308 32.000 12.88 0.00 37.65 2.66
810 829 6.021153 CGAGAAGAGTTTGCAAGTTCAAAAAG 60.021 38.462 12.88 1.12 37.65 2.27
859 881 4.700213 GGGCCTCGCATATATATGTGTTTT 59.300 41.667 27.37 0.00 42.98 2.43
863 885 2.473816 CGGGCCTCGCATATATATGTG 58.526 52.381 24.38 24.38 43.61 3.21
901 923 2.481471 GGGCCTTGGATAAGCGTGC 61.481 63.158 0.84 0.00 32.40 5.34
904 926 0.815615 GACTGGGCCTTGGATAAGCG 60.816 60.000 4.53 0.00 32.40 4.68
905 927 0.815615 CGACTGGGCCTTGGATAAGC 60.816 60.000 4.53 0.00 32.40 3.09
910 932 4.020617 CAGCGACTGGGCCTTGGA 62.021 66.667 4.53 0.00 0.00 3.53
922 944 1.301401 CAGGTCCGGAAAACAGCGA 60.301 57.895 5.23 0.00 0.00 4.93
984 1031 1.777101 CCATCTCCTCGCGATTCTTC 58.223 55.000 10.36 0.00 0.00 2.87
1194 1268 0.682855 AGGAGGACAGCGAGAAGGAG 60.683 60.000 0.00 0.00 0.00 3.69
1277 1384 0.271927 AATAGAGCAGGGATGGGGGA 59.728 55.000 0.00 0.00 0.00 4.81
1371 1481 1.756375 GCTGTGCGCTTGGACGATAG 61.756 60.000 9.73 0.00 36.61 2.08
1372 1482 1.809619 GCTGTGCGCTTGGACGATA 60.810 57.895 9.73 0.00 36.61 2.92
1399 1509 3.367992 TTGTAGAACTTGGCGTCGTAA 57.632 42.857 0.00 0.00 0.00 3.18
1420 1530 1.227350 CAGCGGCTGAATCGGATCA 60.227 57.895 25.33 0.00 32.44 2.92
1481 1591 1.173043 GACAATCCCACGGCATCAAA 58.827 50.000 0.00 0.00 0.00 2.69
1485 1595 2.124736 CCGACAATCCCACGGCAT 60.125 61.111 0.00 0.00 40.19 4.40
1499 1609 0.756294 TTGAGAACACTCTTGGCCGA 59.244 50.000 0.00 0.00 29.54 5.54
1549 1666 4.457496 ATCCCCGCAGCTGTCACG 62.457 66.667 16.64 10.42 0.00 4.35
1653 1770 0.948678 TAGCAAACCAAGCCACGAAC 59.051 50.000 0.00 0.00 0.00 3.95
1815 3792 9.672673 ATTCAACTGCTGTAAATCAACTATAGT 57.327 29.630 0.00 0.00 0.00 2.12
1872 3849 9.905713 TCATTCATGCTCTAAATTAGTAAGGTT 57.094 29.630 0.00 0.00 0.00 3.50
1873 3850 9.905713 TTCATTCATGCTCTAAATTAGTAAGGT 57.094 29.630 0.00 0.00 0.00 3.50
1913 3890 6.142320 GCACAACTATCAAGCACTTTTACAAC 59.858 38.462 0.00 0.00 0.00 3.32
1982 3959 5.809001 TCATCAAGCCACAGGGATAATATC 58.191 41.667 0.00 0.00 35.59 1.63
2011 3993 7.879677 TGACTCAACTCATTGACAAACTATCAT 59.120 33.333 0.00 0.00 40.01 2.45
2071 4053 8.991783 TTTTAGGTAGCTTAGCTAGACAGATA 57.008 34.615 14.87 0.00 42.11 1.98
2118 4104 8.190888 AGAAAGATCAAAATAAGTGCTCTACG 57.809 34.615 0.00 0.00 0.00 3.51
2265 4288 4.394729 TGGTGTATTCCTCAGGAACAAAC 58.605 43.478 8.82 1.37 45.07 2.93
2415 4438 7.027161 GCTTTCTTCAAACAGTGTGAAAGTAA 58.973 34.615 23.39 14.56 43.05 2.24
2443 4466 1.065926 CATAAGAGGCTGGTGTGCTGA 60.066 52.381 0.00 0.00 0.00 4.26
2757 4781 3.868077 AGCAGACATGAGCGAAACTATTC 59.132 43.478 0.00 0.00 35.48 1.75
2768 4792 2.233186 TCCTGAGACAAGCAGACATGAG 59.767 50.000 0.00 0.00 35.39 2.90
2856 4880 1.889530 GAGCTACCTGGTGGTTCGCT 61.890 60.000 10.23 9.11 46.05 4.93
2859 4883 2.789409 AATGAGCTACCTGGTGGTTC 57.211 50.000 18.00 18.00 46.05 3.62
2970 5010 1.615424 ACCCCAGATACGGGCTGTT 60.615 57.895 3.31 0.00 45.90 3.16
3203 5243 6.759497 AGCCTACCAAAATTGAACTCATAC 57.241 37.500 0.00 0.00 0.00 2.39
3207 5247 9.140286 GAATAAAAGCCTACCAAAATTGAACTC 57.860 33.333 0.00 0.00 0.00 3.01
3235 5275 8.689061 ACAAAGAGCATGAATAAGCATGATAAA 58.311 29.630 8.40 0.00 46.64 1.40
3346 5386 0.101579 TCGCATCAATGGCAATGCAG 59.898 50.000 19.41 13.10 46.83 4.41
3395 5435 9.765795 AACAAACACTTAGTATCTATATGAGCC 57.234 33.333 0.00 0.00 0.00 4.70
3473 5514 3.535561 CACAAGCCTGGGAATAGTACAG 58.464 50.000 0.00 0.00 0.00 2.74
3578 5619 9.139174 ACTTACTTGATTTTTGTCAAACAACAG 57.861 29.630 0.00 0.00 37.90 3.16
3619 5660 2.632512 GGCAGGGAGGAAACAAATGAAA 59.367 45.455 0.00 0.00 0.00 2.69
3663 5704 7.833285 TTTGAAGTTTTATTCCAACCTAGCT 57.167 32.000 0.00 0.00 0.00 3.32
3691 5732 8.525290 AGGTATGAGCATTATAAAAACTGCTT 57.475 30.769 11.55 1.78 44.56 3.91
3693 5734 9.831737 CATAGGTATGAGCATTATAAAAACTGC 57.168 33.333 1.30 1.30 35.75 4.40
3714 5755 8.928270 AAGTGTTCGTCTATAAAACTCATAGG 57.072 34.615 0.00 0.00 0.00 2.57
3793 5834 4.701171 TGTTCTCGGTTAAGTTTTGGTGTT 59.299 37.500 0.00 0.00 0.00 3.32
3794 5835 4.095334 GTGTTCTCGGTTAAGTTTTGGTGT 59.905 41.667 0.00 0.00 0.00 4.16
3795 5836 4.594136 GTGTTCTCGGTTAAGTTTTGGTG 58.406 43.478 0.00 0.00 0.00 4.17
3796 5837 3.310501 CGTGTTCTCGGTTAAGTTTTGGT 59.689 43.478 0.00 0.00 0.00 3.67
3797 5838 3.310501 ACGTGTTCTCGGTTAAGTTTTGG 59.689 43.478 0.00 0.00 34.94 3.28
3798 5839 4.525411 ACGTGTTCTCGGTTAAGTTTTG 57.475 40.909 0.00 0.00 34.94 2.44
3799 5840 5.550232 AAACGTGTTCTCGGTTAAGTTTT 57.450 34.783 0.00 0.00 39.00 2.43
3800 5841 5.812127 ACTAAACGTGTTCTCGGTTAAGTTT 59.188 36.000 0.00 0.00 41.36 2.66
3915 5956 4.215613 GGAAGCAACCTTACCAGTTTACTG 59.784 45.833 2.86 2.86 43.40 2.74
3916 5957 4.395625 GGAAGCAACCTTACCAGTTTACT 58.604 43.478 0.00 0.00 0.00 2.24
3917 5958 4.761235 GGAAGCAACCTTACCAGTTTAC 57.239 45.455 0.00 0.00 0.00 2.01
3925 5966 4.929819 TTTTTGAGGGAAGCAACCTTAC 57.070 40.909 0.00 0.00 38.79 2.34
3946 5987 4.618227 GCATCGAGCAACCTTACCATTTTT 60.618 41.667 0.00 0.00 44.79 1.94
3950 5991 1.668419 GCATCGAGCAACCTTACCAT 58.332 50.000 0.00 0.00 44.79 3.55
4039 6080 6.821665 GCATTAGATAACCTGACCAGTTTACA 59.178 38.462 0.00 0.00 0.00 2.41
4061 6102 8.839310 ACGAGCTATTTTCTATTAATGAGCAT 57.161 30.769 0.00 0.00 0.00 3.79
4078 6119 7.064847 CCGATCTATAAACTAGTGACGAGCTAT 59.935 40.741 0.00 0.00 0.00 2.97
4085 6126 5.241064 TCCTGCCGATCTATAAACTAGTGAC 59.759 44.000 0.00 0.00 0.00 3.67
4096 6137 4.285517 ACTGATCATTTCCTGCCGATCTAT 59.714 41.667 0.00 0.00 36.16 1.98
4102 6143 1.742761 ACACTGATCATTTCCTGCCG 58.257 50.000 0.00 0.00 0.00 5.69
4169 6210 4.463891 CCTGTCCACTTTTAAGCCAATGAT 59.536 41.667 0.00 0.00 0.00 2.45
4183 6224 3.780294 TCCAGTATTATTGCCTGTCCACT 59.220 43.478 0.00 0.00 0.00 4.00
4215 6256 5.820423 TGCTTGCTAAACTCACTAAAGACAA 59.180 36.000 0.00 0.00 0.00 3.18
4218 6259 5.611374 AGTGCTTGCTAAACTCACTAAAGA 58.389 37.500 0.00 0.00 36.37 2.52
4224 6265 3.181506 GCCATAGTGCTTGCTAAACTCAC 60.182 47.826 0.00 0.00 0.00 3.51
4325 6366 4.821805 GTGATAAATCATACACCAGTGGGG 59.178 45.833 10.81 10.81 39.30 4.96
4350 6391 8.307483 TCTTCAGTGATAAATCTCGAAGTCTTT 58.693 33.333 16.63 0.00 35.32 2.52
4357 6398 5.185056 TGGTGTCTTCAGTGATAAATCTCGA 59.815 40.000 0.00 0.00 0.00 4.04
4358 6399 5.410924 TGGTGTCTTCAGTGATAAATCTCG 58.589 41.667 0.00 0.00 0.00 4.04
4361 6404 6.256757 GCTACTGGTGTCTTCAGTGATAAATC 59.743 42.308 6.95 0.00 44.24 2.17
4372 6415 3.075148 GGAAAAGGCTACTGGTGTCTTC 58.925 50.000 0.00 0.00 0.00 2.87
4661 7451 7.116736 GGGGTATTTCTTGGAAGAAGAATACA 58.883 38.462 17.69 1.03 45.01 2.29
4665 7455 5.592587 TGGGGTATTTCTTGGAAGAAGAA 57.407 39.130 2.25 0.00 45.01 2.52
4763 7553 6.883756 TGAGATAAACCATGCATGTCACTTTA 59.116 34.615 24.58 18.10 0.00 1.85
4770 7560 5.503927 AGAGTTGAGATAAACCATGCATGT 58.496 37.500 24.58 9.62 0.00 3.21
4817 7607 4.759782 TGAAAAGGAAAAATGCCGAAACA 58.240 34.783 0.00 0.00 0.00 2.83
5019 7812 4.936411 CAGATATTGGGAGATGATGCAGAC 59.064 45.833 0.00 0.00 0.00 3.51
5054 7847 1.602311 AGCAAGCAAGTGAGAACAGG 58.398 50.000 0.00 0.00 0.00 4.00
5200 7993 2.741930 CGCAGAGACGCTTCATCAA 58.258 52.632 0.00 0.00 0.00 2.57
5212 8005 1.330306 CAAACGGAAATTGCGCAGAG 58.670 50.000 11.31 2.22 33.30 3.35
5213 8006 0.662970 GCAAACGGAAATTGCGCAGA 60.663 50.000 11.31 1.94 43.14 4.26
5361 8160 7.623999 TCAAAAGCTCCAGGAGAATATCTAT 57.376 36.000 21.89 0.00 0.00 1.98
5372 8172 2.755103 GGGTTGTATCAAAAGCTCCAGG 59.245 50.000 0.00 0.00 0.00 4.45
5373 8173 3.420893 TGGGTTGTATCAAAAGCTCCAG 58.579 45.455 0.00 0.00 0.00 3.86
5379 8179 7.121759 ACAGATTGAGATGGGTTGTATCAAAAG 59.878 37.037 0.00 0.00 33.91 2.27
5383 8183 5.698741 ACAGATTGAGATGGGTTGTATCA 57.301 39.130 0.00 0.00 0.00 2.15
5391 8191 3.671433 CGTGCAAAACAGATTGAGATGGG 60.671 47.826 0.00 0.00 31.84 4.00
5394 8194 4.836125 AACGTGCAAAACAGATTGAGAT 57.164 36.364 0.00 0.00 31.84 2.75
5408 8208 7.489757 AGCTAAATTCAAAAGTTAAAACGTGCA 59.510 29.630 0.00 0.00 0.00 4.57
5409 8209 7.837505 AGCTAAATTCAAAAGTTAAAACGTGC 58.162 30.769 0.00 0.00 0.00 5.34
5420 8220 9.818796 GTGACTCTTTCTAGCTAAATTCAAAAG 57.181 33.333 0.00 0.00 0.00 2.27
5426 8226 7.327214 CAGGAGTGACTCTTTCTAGCTAAATT 58.673 38.462 12.92 0.00 0.00 1.82
5428 8228 5.336849 GCAGGAGTGACTCTTTCTAGCTAAA 60.337 44.000 12.92 0.00 0.00 1.85
5443 8247 0.976641 CAGTAGGGTTGCAGGAGTGA 59.023 55.000 0.00 0.00 0.00 3.41
5444 8248 0.674895 GCAGTAGGGTTGCAGGAGTG 60.675 60.000 0.00 0.00 41.17 3.51
5456 8260 3.679389 ACAAAGTCCATCAAGCAGTAGG 58.321 45.455 0.00 0.00 0.00 3.18
5459 8263 4.646492 AGAAAACAAAGTCCATCAAGCAGT 59.354 37.500 0.00 0.00 0.00 4.40
5460 8264 4.980434 CAGAAAACAAAGTCCATCAAGCAG 59.020 41.667 0.00 0.00 0.00 4.24
5461 8265 4.644234 TCAGAAAACAAAGTCCATCAAGCA 59.356 37.500 0.00 0.00 0.00 3.91
5462 8266 5.009010 TCTCAGAAAACAAAGTCCATCAAGC 59.991 40.000 0.00 0.00 0.00 4.01
5463 8267 6.624352 TCTCAGAAAACAAAGTCCATCAAG 57.376 37.500 0.00 0.00 0.00 3.02
5464 8268 7.587037 AATCTCAGAAAACAAAGTCCATCAA 57.413 32.000 0.00 0.00 0.00 2.57
5466 8270 9.965824 TTTTAATCTCAGAAAACAAAGTCCATC 57.034 29.630 0.00 0.00 0.00 3.51
5477 8281 9.720769 ACCGAGAGTTATTTTAATCTCAGAAAA 57.279 29.630 0.00 0.00 38.46 2.29
5495 8299 8.362639 TGTTGATAGTTTAAAGTTACCGAGAGT 58.637 33.333 0.00 0.00 0.00 3.24
5500 8304 9.590088 GTTCTTGTTGATAGTTTAAAGTTACCG 57.410 33.333 0.00 0.00 0.00 4.02
5538 8345 3.553904 AGCACAATTTGGTGGCAATTTT 58.446 36.364 0.78 0.00 39.19 1.82
5565 8374 2.543777 TACTCAGCTTGGTGTTGACC 57.456 50.000 0.00 0.00 43.48 4.02
5633 8442 2.017049 CTACATGTAAACCTGGGCAGC 58.983 52.381 7.06 0.00 0.00 5.25
5635 8444 2.354303 CGACTACATGTAAACCTGGGCA 60.354 50.000 7.06 0.00 0.00 5.36
5790 8599 0.474184 CCTGAGTGGTGGTGGAACTT 59.526 55.000 0.00 0.00 36.74 2.66
5936 8745 2.104451 AGCCTTGCTGGTGATATCTCTG 59.896 50.000 3.98 2.36 37.57 3.35
5966 8779 6.373005 TGATGGAATTCTTAGAACCACTCA 57.627 37.500 6.48 8.62 33.38 3.41
6021 8834 3.008704 GGTGGTAGGTAAAGAAAGCTCCA 59.991 47.826 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.