Multiple sequence alignment - TraesCS5A01G194400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G194400 chr5A 100.000 4288 0 0 1 4288 397781595 397785882 0.000000e+00 7919.0
1 TraesCS5A01G194400 chr5A 83.856 1722 205 41 1958 3631 415629137 415627441 0.000000e+00 1572.0
2 TraesCS5A01G194400 chr5A 93.358 813 47 5 2811 3620 396418218 396417410 0.000000e+00 1195.0
3 TraesCS5A01G194400 chr5A 83.516 1280 169 29 2070 3326 390367470 390366210 0.000000e+00 1157.0
4 TraesCS5A01G194400 chr5A 93.914 608 26 3 3687 4288 396417404 396416802 0.000000e+00 907.0
5 TraesCS5A01G194400 chr5A 85.484 496 50 7 3795 4288 398049636 398050111 8.280000e-137 497.0
6 TraesCS5A01G194400 chr5A 85.475 179 23 2 992 1170 390370476 390370301 2.630000e-42 183.0
7 TraesCS5A01G194400 chr5D 91.683 4112 171 79 262 4279 300142238 300146272 0.000000e+00 5541.0
8 TraesCS5A01G194400 chr5D 90.000 1050 63 10 2869 3899 300313843 300314869 0.000000e+00 1319.0
9 TraesCS5A01G194400 chr5D 84.050 1279 159 33 2070 3326 307089311 307090566 0.000000e+00 1190.0
10 TraesCS5A01G194400 chr5D 92.020 802 52 6 3484 4279 300957530 300956735 0.000000e+00 1116.0
11 TraesCS5A01G194400 chr5D 93.750 624 26 3 2869 3491 300958241 300957630 0.000000e+00 924.0
12 TraesCS5A01G194400 chr5D 90.153 457 28 9 3832 4288 300159301 300159740 2.870000e-161 579.0
13 TraesCS5A01G194400 chr5D 88.393 448 38 6 3832 4279 300321721 300322154 1.060000e-145 527.0
14 TraesCS5A01G194400 chr5D 84.906 477 52 7 3814 4288 299070128 299069670 8.400000e-127 464.0
15 TraesCS5A01G194400 chr5D 84.358 179 25 2 992 1170 307086216 307086391 5.700000e-39 172.0
16 TraesCS5A01G194400 chr5B 92.444 3163 141 52 689 3785 343947795 343950925 0.000000e+00 4427.0
17 TraesCS5A01G194400 chr5B 93.118 1889 100 14 2394 4279 339980742 339978881 0.000000e+00 2741.0
18 TraesCS5A01G194400 chr5B 91.258 1796 98 25 2515 4279 340137497 340135730 0.000000e+00 2392.0
19 TraesCS5A01G194400 chr5B 91.258 1796 98 25 2515 4279 340327570 340325803 0.000000e+00 2392.0
20 TraesCS5A01G194400 chr5B 93.096 898 56 3 3383 4279 344238941 344239833 0.000000e+00 1310.0
21 TraesCS5A01G194400 chr5B 83.450 1287 160 40 2070 3326 352309786 352311049 0.000000e+00 1147.0
22 TraesCS5A01G194400 chr5B 87.946 448 40 6 3832 4279 340569169 340568736 2.290000e-142 516.0
23 TraesCS5A01G194400 chr5B 97.080 137 4 0 2394 2530 340154662 340154526 9.270000e-57 231.0
24 TraesCS5A01G194400 chr5B 84.916 179 24 2 992 1170 352306547 352306722 1.230000e-40 178.0
25 TraesCS5A01G194400 chr3D 85.674 1431 163 26 2084 3483 482007265 482005846 0.000000e+00 1469.0
26 TraesCS5A01G194400 chr1D 84.384 1428 187 25 2082 3483 18804382 18802965 0.000000e+00 1369.0
27 TraesCS5A01G194400 chr1D 76.757 185 30 12 138 316 11671282 11671105 1.640000e-14 91.6
28 TraesCS5A01G194400 chr2B 75.956 183 33 10 138 315 77533894 77534070 2.750000e-12 84.2
29 TraesCS5A01G194400 chr2A 92.683 41 2 1 276 316 751666527 751666488 1.670000e-04 58.4
30 TraesCS5A01G194400 chr7A 100.000 29 0 0 288 316 217736324 217736296 2.000000e-03 54.7
31 TraesCS5A01G194400 chr7A 100.000 29 0 0 288 316 299396511 299396483 2.000000e-03 54.7
32 TraesCS5A01G194400 chr3A 100.000 29 0 0 288 316 261385524 261385496 2.000000e-03 54.7
33 TraesCS5A01G194400 chr3A 100.000 29 0 0 288 316 735710630 735710658 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G194400 chr5A 397781595 397785882 4287 False 7919.0 7919 100.0000 1 4288 1 chr5A.!!$F1 4287
1 TraesCS5A01G194400 chr5A 415627441 415629137 1696 True 1572.0 1572 83.8560 1958 3631 1 chr5A.!!$R1 1673
2 TraesCS5A01G194400 chr5A 396416802 396418218 1416 True 1051.0 1195 93.6360 2811 4288 2 chr5A.!!$R3 1477
3 TraesCS5A01G194400 chr5A 390366210 390370476 4266 True 670.0 1157 84.4955 992 3326 2 chr5A.!!$R2 2334
4 TraesCS5A01G194400 chr5D 300142238 300146272 4034 False 5541.0 5541 91.6830 262 4279 1 chr5D.!!$F1 4017
5 TraesCS5A01G194400 chr5D 300313843 300314869 1026 False 1319.0 1319 90.0000 2869 3899 1 chr5D.!!$F3 1030
6 TraesCS5A01G194400 chr5D 300956735 300958241 1506 True 1020.0 1116 92.8850 2869 4279 2 chr5D.!!$R2 1410
7 TraesCS5A01G194400 chr5D 307086216 307090566 4350 False 681.0 1190 84.2040 992 3326 2 chr5D.!!$F5 2334
8 TraesCS5A01G194400 chr5B 343947795 343950925 3130 False 4427.0 4427 92.4440 689 3785 1 chr5B.!!$F1 3096
9 TraesCS5A01G194400 chr5B 339978881 339980742 1861 True 2741.0 2741 93.1180 2394 4279 1 chr5B.!!$R1 1885
10 TraesCS5A01G194400 chr5B 340135730 340137497 1767 True 2392.0 2392 91.2580 2515 4279 1 chr5B.!!$R2 1764
11 TraesCS5A01G194400 chr5B 340325803 340327570 1767 True 2392.0 2392 91.2580 2515 4279 1 chr5B.!!$R4 1764
12 TraesCS5A01G194400 chr5B 344238941 344239833 892 False 1310.0 1310 93.0960 3383 4279 1 chr5B.!!$F2 896
13 TraesCS5A01G194400 chr5B 352306547 352311049 4502 False 662.5 1147 84.1830 992 3326 2 chr5B.!!$F3 2334
14 TraesCS5A01G194400 chr3D 482005846 482007265 1419 True 1469.0 1469 85.6740 2084 3483 1 chr3D.!!$R1 1399
15 TraesCS5A01G194400 chr1D 18802965 18804382 1417 True 1369.0 1369 84.3840 2082 3483 1 chr1D.!!$R2 1401

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 253 0.034089 AGCCTCCCTGCCAATGTAAC 60.034 55.0 0.00 0.00 0.0 2.50 F
581 584 0.034896 TCCCCTTTCAGCTGACGTTC 59.965 55.0 18.03 0.00 0.0 3.95 F
678 694 0.108281 GAGAACCGGCCCTAACTGAC 60.108 60.0 0.00 0.00 0.0 3.51 F
1585 1708 0.371301 CCGTGCTCATCATGTTGTCG 59.629 55.0 3.76 5.46 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1177 1259 0.107456 AACAGCCAGACACAGACAGG 59.893 55.000 0.0 0.0 0.00 4.00 R
1561 1684 0.107508 ACATGATGAGCACGGGAAGG 60.108 55.000 0.0 0.0 0.00 3.46 R
2489 5086 0.310854 CCTTGCGTCTTGTTTCCCAC 59.689 55.000 0.0 0.0 0.00 4.61 R
3443 6084 1.522580 GGCACAGAGATTCGAGCCC 60.523 63.158 0.0 0.0 36.17 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.281525 GCCGTGTACTTTTTGAAACTGA 57.718 40.909 0.00 0.00 0.00 3.41
22 23 4.033019 GCCGTGTACTTTTTGAAACTGAC 58.967 43.478 0.00 0.00 0.00 3.51
23 24 4.437659 GCCGTGTACTTTTTGAAACTGACA 60.438 41.667 0.00 0.00 0.00 3.58
24 25 5.263185 CCGTGTACTTTTTGAAACTGACAG 58.737 41.667 0.00 0.00 0.00 3.51
25 26 4.728608 CGTGTACTTTTTGAAACTGACAGC 59.271 41.667 1.25 0.00 0.00 4.40
26 27 5.034797 GTGTACTTTTTGAAACTGACAGCC 58.965 41.667 1.25 0.00 0.00 4.85
27 28 4.947388 TGTACTTTTTGAAACTGACAGCCT 59.053 37.500 1.25 0.00 0.00 4.58
28 29 4.639135 ACTTTTTGAAACTGACAGCCTC 57.361 40.909 1.25 0.00 0.00 4.70
29 30 4.016444 ACTTTTTGAAACTGACAGCCTCA 58.984 39.130 1.25 2.61 0.00 3.86
30 31 4.142381 ACTTTTTGAAACTGACAGCCTCAC 60.142 41.667 1.25 0.00 0.00 3.51
31 32 3.281727 TTTGAAACTGACAGCCTCACT 57.718 42.857 1.25 0.00 0.00 3.41
32 33 2.533266 TGAAACTGACAGCCTCACTC 57.467 50.000 1.25 0.00 0.00 3.51
33 34 2.042464 TGAAACTGACAGCCTCACTCT 58.958 47.619 1.25 0.00 0.00 3.24
34 35 2.036475 TGAAACTGACAGCCTCACTCTC 59.964 50.000 1.25 0.00 0.00 3.20
35 36 0.972883 AACTGACAGCCTCACTCTCC 59.027 55.000 1.25 0.00 0.00 3.71
36 37 0.178950 ACTGACAGCCTCACTCTCCA 60.179 55.000 1.25 0.00 0.00 3.86
37 38 0.972134 CTGACAGCCTCACTCTCCAA 59.028 55.000 0.00 0.00 0.00 3.53
38 39 1.345741 CTGACAGCCTCACTCTCCAAA 59.654 52.381 0.00 0.00 0.00 3.28
39 40 1.768275 TGACAGCCTCACTCTCCAAAA 59.232 47.619 0.00 0.00 0.00 2.44
40 41 2.373169 TGACAGCCTCACTCTCCAAAAT 59.627 45.455 0.00 0.00 0.00 1.82
41 42 2.746362 GACAGCCTCACTCTCCAAAATG 59.254 50.000 0.00 0.00 0.00 2.32
42 43 1.471684 CAGCCTCACTCTCCAAAATGC 59.528 52.381 0.00 0.00 0.00 3.56
43 44 1.353694 AGCCTCACTCTCCAAAATGCT 59.646 47.619 0.00 0.00 0.00 3.79
44 45 2.573462 AGCCTCACTCTCCAAAATGCTA 59.427 45.455 0.00 0.00 0.00 3.49
45 46 3.201708 AGCCTCACTCTCCAAAATGCTAT 59.798 43.478 0.00 0.00 0.00 2.97
46 47 4.410228 AGCCTCACTCTCCAAAATGCTATA 59.590 41.667 0.00 0.00 0.00 1.31
47 48 5.072872 AGCCTCACTCTCCAAAATGCTATAT 59.927 40.000 0.00 0.00 0.00 0.86
48 49 5.411053 GCCTCACTCTCCAAAATGCTATATC 59.589 44.000 0.00 0.00 0.00 1.63
49 50 5.936956 CCTCACTCTCCAAAATGCTATATCC 59.063 44.000 0.00 0.00 0.00 2.59
50 51 6.239829 CCTCACTCTCCAAAATGCTATATCCT 60.240 42.308 0.00 0.00 0.00 3.24
51 52 6.763355 TCACTCTCCAAAATGCTATATCCTC 58.237 40.000 0.00 0.00 0.00 3.71
52 53 6.327365 TCACTCTCCAAAATGCTATATCCTCA 59.673 38.462 0.00 0.00 0.00 3.86
53 54 6.994496 CACTCTCCAAAATGCTATATCCTCAA 59.006 38.462 0.00 0.00 0.00 3.02
54 55 7.172875 CACTCTCCAAAATGCTATATCCTCAAG 59.827 40.741 0.00 0.00 0.00 3.02
55 56 6.000219 TCTCCAAAATGCTATATCCTCAAGC 59.000 40.000 0.00 0.00 36.77 4.01
56 57 5.945310 TCCAAAATGCTATATCCTCAAGCT 58.055 37.500 0.00 0.00 37.16 3.74
57 58 6.000219 TCCAAAATGCTATATCCTCAAGCTC 59.000 40.000 0.00 0.00 37.16 4.09
58 59 5.106791 CCAAAATGCTATATCCTCAAGCTCG 60.107 44.000 0.00 0.00 37.16 5.03
59 60 2.732412 TGCTATATCCTCAAGCTCGC 57.268 50.000 0.00 0.00 37.16 5.03
60 61 1.963515 TGCTATATCCTCAAGCTCGCA 59.036 47.619 0.00 0.00 37.16 5.10
61 62 2.288457 TGCTATATCCTCAAGCTCGCAC 60.288 50.000 0.00 0.00 37.16 5.34
62 63 2.590073 CTATATCCTCAAGCTCGCACG 58.410 52.381 0.00 0.00 0.00 5.34
63 64 1.032794 ATATCCTCAAGCTCGCACGA 58.967 50.000 0.00 0.00 0.00 4.35
64 65 1.032794 TATCCTCAAGCTCGCACGAT 58.967 50.000 0.00 0.00 0.00 3.73
65 66 0.176680 ATCCTCAAGCTCGCACGATT 59.823 50.000 0.00 0.00 0.00 3.34
66 67 0.815095 TCCTCAAGCTCGCACGATTA 59.185 50.000 0.00 0.00 0.00 1.75
67 68 0.924090 CCTCAAGCTCGCACGATTAC 59.076 55.000 0.00 0.00 0.00 1.89
68 69 1.629013 CTCAAGCTCGCACGATTACA 58.371 50.000 0.00 0.00 0.00 2.41
69 70 1.321743 CTCAAGCTCGCACGATTACAC 59.678 52.381 0.00 0.00 0.00 2.90
70 71 1.067693 CAAGCTCGCACGATTACACA 58.932 50.000 0.00 0.00 0.00 3.72
71 72 1.068474 AAGCTCGCACGATTACACAC 58.932 50.000 0.00 0.00 0.00 3.82
72 73 0.736325 AGCTCGCACGATTACACACC 60.736 55.000 0.00 0.00 0.00 4.16
73 74 1.988409 CTCGCACGATTACACACCG 59.012 57.895 0.00 0.00 0.00 4.94
74 75 1.410737 CTCGCACGATTACACACCGG 61.411 60.000 0.00 0.00 0.00 5.28
75 76 1.735198 CGCACGATTACACACCGGT 60.735 57.895 0.00 0.00 0.00 5.28
80 81 0.738412 CGATTACACACCGGTGGGTC 60.738 60.000 44.20 28.86 45.52 4.46
81 82 0.322322 GATTACACACCGGTGGGTCA 59.678 55.000 44.20 34.67 45.52 4.02
82 83 0.988832 ATTACACACCGGTGGGTCAT 59.011 50.000 44.20 35.26 45.52 3.06
83 84 0.322322 TTACACACCGGTGGGTCATC 59.678 55.000 44.20 0.00 45.52 2.92
84 85 0.543410 TACACACCGGTGGGTCATCT 60.543 55.000 44.20 23.51 45.52 2.90
85 86 1.375908 CACACCGGTGGGTCATCTG 60.376 63.158 36.47 20.64 46.01 2.90
86 87 1.841556 ACACCGGTGGGTCATCTGT 60.842 57.895 36.47 11.21 46.01 3.41
87 88 1.374947 CACCGGTGGGTCATCTGTT 59.625 57.895 27.57 0.00 46.01 3.16
88 89 0.250727 CACCGGTGGGTCATCTGTTT 60.251 55.000 27.57 0.00 46.01 2.83
89 90 0.036306 ACCGGTGGGTCATCTGTTTC 59.964 55.000 6.12 0.00 46.01 2.78
90 91 1.019278 CCGGTGGGTCATCTGTTTCG 61.019 60.000 0.00 0.00 0.00 3.46
91 92 0.320421 CGGTGGGTCATCTGTTTCGT 60.320 55.000 0.00 0.00 0.00 3.85
92 93 1.156736 GGTGGGTCATCTGTTTCGTG 58.843 55.000 0.00 0.00 0.00 4.35
93 94 1.270625 GGTGGGTCATCTGTTTCGTGA 60.271 52.381 0.00 0.00 0.00 4.35
94 95 2.615493 GGTGGGTCATCTGTTTCGTGAT 60.615 50.000 0.00 0.00 0.00 3.06
95 96 3.369052 GGTGGGTCATCTGTTTCGTGATA 60.369 47.826 0.00 0.00 0.00 2.15
96 97 4.442706 GTGGGTCATCTGTTTCGTGATAT 58.557 43.478 0.00 0.00 0.00 1.63
97 98 4.508124 GTGGGTCATCTGTTTCGTGATATC 59.492 45.833 0.00 0.00 0.00 1.63
98 99 4.161377 TGGGTCATCTGTTTCGTGATATCA 59.839 41.667 0.00 0.00 0.00 2.15
99 100 5.116180 GGGTCATCTGTTTCGTGATATCAA 58.884 41.667 7.07 0.00 0.00 2.57
100 101 5.235186 GGGTCATCTGTTTCGTGATATCAAG 59.765 44.000 7.07 9.83 0.00 3.02
101 102 5.812642 GGTCATCTGTTTCGTGATATCAAGT 59.187 40.000 16.71 0.00 0.00 3.16
102 103 6.978659 GGTCATCTGTTTCGTGATATCAAGTA 59.021 38.462 16.71 6.24 0.00 2.24
103 104 7.168302 GGTCATCTGTTTCGTGATATCAAGTAG 59.832 40.741 16.71 11.52 0.00 2.57
104 105 7.702772 GTCATCTGTTTCGTGATATCAAGTAGT 59.297 37.037 16.71 0.00 0.00 2.73
105 106 8.899771 TCATCTGTTTCGTGATATCAAGTAGTA 58.100 33.333 16.71 0.00 0.00 1.82
106 107 9.684448 CATCTGTTTCGTGATATCAAGTAGTAT 57.316 33.333 16.71 4.16 0.00 2.12
110 111 9.459640 TGTTTCGTGATATCAAGTAGTATAAGC 57.540 33.333 16.71 6.89 0.00 3.09
111 112 9.680315 GTTTCGTGATATCAAGTAGTATAAGCT 57.320 33.333 16.71 0.00 0.00 3.74
131 132 6.966534 AGCTTAATACCCAATTCATTCAGG 57.033 37.500 0.00 0.00 0.00 3.86
132 133 5.302823 AGCTTAATACCCAATTCATTCAGGC 59.697 40.000 0.00 0.00 0.00 4.85
133 134 5.302823 GCTTAATACCCAATTCATTCAGGCT 59.697 40.000 0.00 0.00 0.00 4.58
134 135 6.713762 TTAATACCCAATTCATTCAGGCTG 57.286 37.500 8.58 8.58 0.00 4.85
135 136 2.905415 ACCCAATTCATTCAGGCTGA 57.095 45.000 14.43 14.43 0.00 4.26
136 137 3.173953 ACCCAATTCATTCAGGCTGAA 57.826 42.857 30.29 30.29 41.09 3.02
137 138 3.094572 ACCCAATTCATTCAGGCTGAAG 58.905 45.455 31.17 22.81 40.05 3.02
138 139 3.094572 CCCAATTCATTCAGGCTGAAGT 58.905 45.455 31.17 18.24 40.05 3.01
139 140 4.263905 ACCCAATTCATTCAGGCTGAAGTA 60.264 41.667 31.17 20.21 40.05 2.24
140 141 4.337555 CCCAATTCATTCAGGCTGAAGTAG 59.662 45.833 31.17 23.17 40.05 2.57
141 142 4.946157 CCAATTCATTCAGGCTGAAGTAGT 59.054 41.667 31.17 17.28 40.05 2.73
142 143 5.065731 CCAATTCATTCAGGCTGAAGTAGTC 59.934 44.000 31.17 0.00 40.05 2.59
143 144 3.895232 TCATTCAGGCTGAAGTAGTCC 57.105 47.619 31.17 0.00 40.05 3.85
144 145 3.173151 TCATTCAGGCTGAAGTAGTCCA 58.827 45.455 31.17 9.76 40.05 4.02
145 146 3.776969 TCATTCAGGCTGAAGTAGTCCAT 59.223 43.478 31.17 12.36 40.05 3.41
146 147 3.616956 TTCAGGCTGAAGTAGTCCATG 57.383 47.619 25.38 0.00 31.83 3.66
147 148 2.540383 TCAGGCTGAAGTAGTCCATGT 58.460 47.619 16.28 0.00 0.00 3.21
148 149 2.906389 TCAGGCTGAAGTAGTCCATGTT 59.094 45.455 16.28 0.00 0.00 2.71
149 150 3.005554 CAGGCTGAAGTAGTCCATGTTG 58.994 50.000 9.42 0.00 0.00 3.33
150 151 1.740025 GGCTGAAGTAGTCCATGTTGC 59.260 52.381 0.00 0.00 0.00 4.17
151 152 2.426522 GCTGAAGTAGTCCATGTTGCA 58.573 47.619 0.00 0.00 0.00 4.08
152 153 2.160417 GCTGAAGTAGTCCATGTTGCAC 59.840 50.000 0.00 0.00 0.00 4.57
153 154 2.412870 TGAAGTAGTCCATGTTGCACG 58.587 47.619 0.00 0.00 0.00 5.34
154 155 2.224185 TGAAGTAGTCCATGTTGCACGT 60.224 45.455 0.00 0.00 0.00 4.49
155 156 3.006003 TGAAGTAGTCCATGTTGCACGTA 59.994 43.478 0.00 0.00 0.00 3.57
156 157 3.232213 AGTAGTCCATGTTGCACGTAG 57.768 47.619 0.00 0.00 0.00 3.51
157 158 1.659098 GTAGTCCATGTTGCACGTAGC 59.341 52.381 0.00 0.00 45.96 3.58
158 159 0.321671 AGTCCATGTTGCACGTAGCT 59.678 50.000 10.54 0.00 45.94 3.32
159 160 0.443869 GTCCATGTTGCACGTAGCTG 59.556 55.000 0.00 2.11 45.94 4.24
160 161 0.034756 TCCATGTTGCACGTAGCTGT 59.965 50.000 0.00 0.00 45.94 4.40
161 162 1.273886 TCCATGTTGCACGTAGCTGTA 59.726 47.619 0.00 0.00 45.94 2.74
162 163 2.073056 CCATGTTGCACGTAGCTGTAA 58.927 47.619 0.00 0.00 45.94 2.41
163 164 2.677836 CCATGTTGCACGTAGCTGTAAT 59.322 45.455 0.00 0.00 45.94 1.89
164 165 3.868661 CCATGTTGCACGTAGCTGTAATA 59.131 43.478 0.00 0.00 45.94 0.98
165 166 4.331443 CCATGTTGCACGTAGCTGTAATAA 59.669 41.667 0.00 0.00 45.94 1.40
166 167 5.492854 CATGTTGCACGTAGCTGTAATAAG 58.507 41.667 0.00 0.00 45.94 1.73
167 168 3.369756 TGTTGCACGTAGCTGTAATAAGC 59.630 43.478 0.00 0.00 45.94 3.09
168 169 2.546778 TGCACGTAGCTGTAATAAGCC 58.453 47.619 0.00 0.00 44.68 4.35
169 170 2.093921 TGCACGTAGCTGTAATAAGCCA 60.094 45.455 0.00 0.00 44.68 4.75
170 171 2.540101 GCACGTAGCTGTAATAAGCCAG 59.460 50.000 0.00 0.00 44.68 4.85
178 179 4.282950 CTGTAATAAGCCAGCACATGTG 57.717 45.455 21.83 21.83 0.00 3.21
179 180 3.684908 TGTAATAAGCCAGCACATGTGT 58.315 40.909 26.01 10.99 0.00 3.72
180 181 4.078537 TGTAATAAGCCAGCACATGTGTT 58.921 39.130 26.01 18.60 0.00 3.32
181 182 3.581024 AATAAGCCAGCACATGTGTTG 57.419 42.857 29.61 29.61 40.78 3.33
185 186 2.256158 CAGCACATGTGTTGGCCG 59.744 61.111 29.10 8.80 38.01 6.13
186 187 3.673484 AGCACATGTGTTGGCCGC 61.673 61.111 26.01 10.65 0.00 6.53
187 188 4.722855 GCACATGTGTTGGCCGCC 62.723 66.667 26.01 1.04 0.00 6.13
188 189 3.293714 CACATGTGTTGGCCGCCA 61.294 61.111 18.03 8.43 0.00 5.69
189 190 2.283101 ACATGTGTTGGCCGCCAT 60.283 55.556 14.30 0.00 31.53 4.40
190 191 2.182284 CATGTGTTGGCCGCCATG 59.818 61.111 14.30 4.02 31.53 3.66
191 192 3.069946 ATGTGTTGGCCGCCATGG 61.070 61.111 14.30 7.63 42.50 3.66
200 201 4.511246 CCGCCATGGGTGCAGGAT 62.511 66.667 15.13 0.00 0.00 3.24
201 202 2.440796 CGCCATGGGTGCAGGATT 60.441 61.111 15.13 0.00 0.00 3.01
202 203 1.152984 CGCCATGGGTGCAGGATTA 60.153 57.895 15.13 0.00 0.00 1.75
203 204 1.168407 CGCCATGGGTGCAGGATTAG 61.168 60.000 15.13 0.00 0.00 1.73
204 205 1.458639 GCCATGGGTGCAGGATTAGC 61.459 60.000 15.13 0.00 0.00 3.09
205 206 0.184451 CCATGGGTGCAGGATTAGCT 59.816 55.000 2.85 0.00 0.00 3.32
206 207 1.421268 CCATGGGTGCAGGATTAGCTA 59.579 52.381 2.85 0.00 0.00 3.32
207 208 2.498167 CATGGGTGCAGGATTAGCTAC 58.502 52.381 0.00 0.00 0.00 3.58
208 209 1.879575 TGGGTGCAGGATTAGCTACT 58.120 50.000 0.00 0.00 0.00 2.57
209 210 1.486310 TGGGTGCAGGATTAGCTACTG 59.514 52.381 5.66 5.66 35.40 2.74
210 211 1.202698 GGGTGCAGGATTAGCTACTGG 60.203 57.143 10.80 0.00 32.98 4.00
211 212 1.486726 GGTGCAGGATTAGCTACTGGT 59.513 52.381 10.80 0.00 32.98 4.00
212 213 2.555199 GTGCAGGATTAGCTACTGGTG 58.445 52.381 10.80 1.13 32.98 4.17
213 214 2.168521 GTGCAGGATTAGCTACTGGTGA 59.831 50.000 10.80 0.00 32.98 4.02
214 215 2.837591 TGCAGGATTAGCTACTGGTGAA 59.162 45.455 10.80 0.00 32.98 3.18
215 216 3.118629 TGCAGGATTAGCTACTGGTGAAG 60.119 47.826 10.80 0.00 32.98 3.02
216 217 3.462021 CAGGATTAGCTACTGGTGAAGC 58.538 50.000 0.00 0.00 39.08 3.86
217 218 2.101582 AGGATTAGCTACTGGTGAAGCG 59.898 50.000 0.00 0.00 43.63 4.68
218 219 2.159085 GGATTAGCTACTGGTGAAGCGT 60.159 50.000 0.00 0.00 43.63 5.07
219 220 2.649331 TTAGCTACTGGTGAAGCGTC 57.351 50.000 0.00 0.00 43.63 5.19
220 221 1.835494 TAGCTACTGGTGAAGCGTCT 58.165 50.000 0.31 0.00 43.63 4.18
221 222 0.969894 AGCTACTGGTGAAGCGTCTT 59.030 50.000 0.31 0.00 43.63 3.01
222 223 1.344763 AGCTACTGGTGAAGCGTCTTT 59.655 47.619 0.31 0.00 43.63 2.52
223 224 1.461127 GCTACTGGTGAAGCGTCTTTG 59.539 52.381 0.31 0.00 0.00 2.77
224 225 2.755650 CTACTGGTGAAGCGTCTTTGT 58.244 47.619 0.31 0.00 0.00 2.83
225 226 1.299541 ACTGGTGAAGCGTCTTTGTG 58.700 50.000 0.31 0.00 0.00 3.33
226 227 0.588252 CTGGTGAAGCGTCTTTGTGG 59.412 55.000 0.31 0.00 0.00 4.17
227 228 1.282875 GGTGAAGCGTCTTTGTGGC 59.717 57.895 0.31 0.00 0.00 5.01
228 229 1.166531 GGTGAAGCGTCTTTGTGGCT 61.167 55.000 0.31 0.00 39.01 4.75
230 231 0.662619 TGAAGCGTCTTTGTGGCTTG 59.337 50.000 1.82 0.00 46.23 4.01
231 232 0.944386 GAAGCGTCTTTGTGGCTTGA 59.056 50.000 1.82 0.00 46.23 3.02
232 233 0.663153 AAGCGTCTTTGTGGCTTGAC 59.337 50.000 0.00 0.00 44.69 3.18
233 234 0.463654 AGCGTCTTTGTGGCTTGACA 60.464 50.000 0.00 0.00 31.91 3.58
234 235 0.040958 GCGTCTTTGTGGCTTGACAG 60.041 55.000 0.00 0.00 0.00 3.51
235 236 0.040958 CGTCTTTGTGGCTTGACAGC 60.041 55.000 0.00 0.00 46.52 4.40
243 244 2.749441 GCTTGACAGCCTCCCTGC 60.749 66.667 0.00 0.00 45.78 4.85
244 245 2.045536 CTTGACAGCCTCCCTGCC 60.046 66.667 0.00 0.00 45.78 4.85
245 246 2.853542 TTGACAGCCTCCCTGCCA 60.854 61.111 0.00 0.00 45.78 4.92
246 247 2.416107 CTTGACAGCCTCCCTGCCAA 62.416 60.000 0.00 0.00 45.78 4.52
247 248 1.792757 TTGACAGCCTCCCTGCCAAT 61.793 55.000 0.00 0.00 45.78 3.16
248 249 1.751927 GACAGCCTCCCTGCCAATG 60.752 63.158 0.00 0.00 45.78 2.82
249 250 2.357836 CAGCCTCCCTGCCAATGT 59.642 61.111 0.00 0.00 34.21 2.71
250 251 1.207488 ACAGCCTCCCTGCCAATGTA 61.207 55.000 0.00 0.00 45.78 2.29
251 252 0.034186 CAGCCTCCCTGCCAATGTAA 60.034 55.000 0.00 0.00 34.21 2.41
252 253 0.034089 AGCCTCCCTGCCAATGTAAC 60.034 55.000 0.00 0.00 0.00 2.50
253 254 1.037579 GCCTCCCTGCCAATGTAACC 61.038 60.000 0.00 0.00 0.00 2.85
254 255 0.625849 CCTCCCTGCCAATGTAACCT 59.374 55.000 0.00 0.00 0.00 3.50
255 256 1.683011 CCTCCCTGCCAATGTAACCTG 60.683 57.143 0.00 0.00 0.00 4.00
256 257 1.004745 CTCCCTGCCAATGTAACCTGT 59.995 52.381 0.00 0.00 0.00 4.00
257 258 1.176527 CCCTGCCAATGTAACCTGTG 58.823 55.000 0.00 0.00 0.00 3.66
258 259 1.547675 CCCTGCCAATGTAACCTGTGT 60.548 52.381 0.00 0.00 0.00 3.72
259 260 1.812571 CCTGCCAATGTAACCTGTGTC 59.187 52.381 0.00 0.00 0.00 3.67
260 261 2.503331 CTGCCAATGTAACCTGTGTCA 58.497 47.619 0.00 0.00 0.00 3.58
271 272 0.036388 CCTGTGTCATAACCGGCAGT 60.036 55.000 0.00 0.00 0.00 4.40
286 287 1.565305 GCAGTTCTGCCGTGATCTAG 58.435 55.000 13.11 0.00 0.00 2.43
378 379 7.598759 TGAGCCCTTAATTAGTAAGAGTAGG 57.401 40.000 0.66 0.00 41.70 3.18
398 399 8.293699 AGTAGGCTTCTACAATAAAATTTGGG 57.706 34.615 0.00 0.00 44.32 4.12
438 439 4.102649 TGTTCGCTGTACAGTATGATTCG 58.897 43.478 23.44 15.93 39.69 3.34
450 451 7.916128 ACAGTATGATTCGATAGTTTCTTCG 57.084 36.000 0.00 0.00 39.69 3.79
483 486 9.108284 CAGGGCAATTTCTTTAAAGAAGAAAAA 57.892 29.630 25.38 14.32 45.79 1.94
559 562 3.339253 AAAAAGCATTCCCTTGCCATC 57.661 42.857 0.00 0.00 43.83 3.51
560 563 1.197812 AAAGCATTCCCTTGCCATCC 58.802 50.000 0.00 0.00 43.83 3.51
561 564 0.041535 AAGCATTCCCTTGCCATCCA 59.958 50.000 0.00 0.00 43.83 3.41
581 584 0.034896 TCCCCTTTCAGCTGACGTTC 59.965 55.000 18.03 0.00 0.00 3.95
582 585 1.291877 CCCCTTTCAGCTGACGTTCG 61.292 60.000 18.03 2.94 0.00 3.95
597 600 4.384547 TGACGTTCGTCACTTATCATTGTG 59.615 41.667 21.38 0.00 39.83 3.33
630 633 5.887598 TCTGGATTGGTATGTCAAATCAAGG 59.112 40.000 0.00 0.00 0.00 3.61
678 694 0.108281 GAGAACCGGCCCTAACTGAC 60.108 60.000 0.00 0.00 0.00 3.51
679 695 1.078637 GAACCGGCCCTAACTGACC 60.079 63.158 0.00 0.00 0.00 4.02
726 757 0.584876 CCTTGTCCGTCCACGTTTTC 59.415 55.000 0.00 0.00 37.74 2.29
728 759 1.260561 CTTGTCCGTCCACGTTTTCTG 59.739 52.381 0.00 0.00 37.74 3.02
754 786 3.667960 CGCCTTTTCGTCATCTTTCCTTG 60.668 47.826 0.00 0.00 0.00 3.61
758 790 2.839486 TCGTCATCTTTCCTTGCACT 57.161 45.000 0.00 0.00 0.00 4.40
759 791 3.126001 TCGTCATCTTTCCTTGCACTT 57.874 42.857 0.00 0.00 0.00 3.16
760 792 2.807967 TCGTCATCTTTCCTTGCACTTG 59.192 45.455 0.00 0.00 0.00 3.16
761 793 2.666619 CGTCATCTTTCCTTGCACTTGC 60.667 50.000 0.00 0.00 42.50 4.01
771 803 3.205395 GCACTTGCACCCAACACA 58.795 55.556 0.00 0.00 41.59 3.72
772 804 1.066257 GCACTTGCACCCAACACAG 59.934 57.895 0.00 0.00 41.59 3.66
773 805 1.383456 GCACTTGCACCCAACACAGA 61.383 55.000 0.00 0.00 41.59 3.41
774 806 0.664761 CACTTGCACCCAACACAGAG 59.335 55.000 0.00 0.00 0.00 3.35
799 831 0.907230 AGACAGTGGGCTTCTCTCCC 60.907 60.000 0.00 0.00 44.17 4.30
800 832 1.904990 GACAGTGGGCTTCTCTCCCC 61.905 65.000 0.00 0.00 43.24 4.81
816 848 2.171448 CTCCCCTACAGAAATGGACCAG 59.829 54.545 0.00 0.00 0.00 4.00
817 849 1.916181 CCCCTACAGAAATGGACCAGT 59.084 52.381 0.00 0.00 0.00 4.00
818 850 2.092914 CCCCTACAGAAATGGACCAGTC 60.093 54.545 0.00 0.00 0.00 3.51
842 874 3.295273 ATCCGCATCCGCTCGCTA 61.295 61.111 0.00 0.00 35.30 4.26
875 926 4.781934 ACAAAGGTTAGTTCTTGCTCAGT 58.218 39.130 0.00 0.00 0.00 3.41
876 927 5.925509 ACAAAGGTTAGTTCTTGCTCAGTA 58.074 37.500 0.00 0.00 0.00 2.74
877 928 5.758784 ACAAAGGTTAGTTCTTGCTCAGTAC 59.241 40.000 0.00 0.00 0.00 2.73
917 968 4.475135 GGCTTGTCCCCCTCGCTC 62.475 72.222 0.00 0.00 0.00 5.03
918 969 4.475135 GCTTGTCCCCCTCGCTCC 62.475 72.222 0.00 0.00 0.00 4.70
919 970 3.787001 CTTGTCCCCCTCGCTCCC 61.787 72.222 0.00 0.00 0.00 4.30
939 990 1.376543 CAGTATTGACTGCTGGCAGG 58.623 55.000 23.74 2.59 46.41 4.85
940 991 2.015588 CAGTATTGACTGCTGGCAGGG 61.016 57.143 23.74 4.14 46.41 4.45
983 1062 4.247380 GCCCAGCCTCGGATCCAG 62.247 72.222 13.41 8.30 0.00 3.86
989 1068 2.444706 CCTCGGATCCAGGAGCCA 60.445 66.667 23.99 9.84 38.11 4.75
1177 1259 5.162000 CCTCTTCGAGGTAAATTCATTGC 57.838 43.478 1.71 0.00 44.25 3.56
1178 1260 4.035675 CCTCTTCGAGGTAAATTCATTGCC 59.964 45.833 1.71 0.00 44.25 4.52
1227 1315 2.422597 TCAGTTAGGATGCGTTTGGTG 58.577 47.619 0.00 0.00 0.00 4.17
1383 1482 5.712217 TTCAAACCGTGTTGATATCGATC 57.288 39.130 0.00 0.00 37.36 3.69
1385 1484 2.417339 ACCGTGTTGATATCGATCGG 57.583 50.000 24.99 24.99 41.77 4.18
1409 1528 8.070171 CGGTTCATGGTAATTAGTCAAATGATC 58.930 37.037 0.00 0.00 0.00 2.92
1513 1632 5.007136 GTCAGCTCAATTACTAGATGGTTGC 59.993 44.000 0.00 0.00 30.18 4.17
1528 1647 7.352079 AGATGGTTGCCTTAATAATCAAAGG 57.648 36.000 0.00 0.00 44.32 3.11
1530 1649 6.926630 TGGTTGCCTTAATAATCAAAGGTT 57.073 33.333 3.28 0.00 43.55 3.50
1531 1650 8.602472 ATGGTTGCCTTAATAATCAAAGGTTA 57.398 30.769 3.28 0.00 43.55 2.85
1532 1651 8.062065 TGGTTGCCTTAATAATCAAAGGTTAG 57.938 34.615 3.28 0.00 43.55 2.34
1553 1676 9.120538 GGTTAGTAGATTGGATCAATGCTTAAA 57.879 33.333 0.00 0.00 33.90 1.52
1561 1684 7.542534 TTGGATCAATGCTTAAATTTCATGC 57.457 32.000 0.00 0.00 0.00 4.06
1574 1697 2.046023 CATGCCTTCCCGTGCTCA 60.046 61.111 0.00 0.00 0.00 4.26
1585 1708 0.371301 CCGTGCTCATCATGTTGTCG 59.629 55.000 3.76 5.46 0.00 4.35
1627 1753 1.276138 ACTTGTCATGTGGAGATCGCA 59.724 47.619 0.00 0.00 40.50 5.10
1632 1758 2.799412 GTCATGTGGAGATCGCAGATTC 59.201 50.000 0.00 0.00 45.12 2.52
1673 1800 2.026542 CCCCACCCAAGTAGGTCTTTAC 60.027 54.545 0.00 0.00 38.39 2.01
1682 1809 7.037873 ACCCAAGTAGGTCTTTACATCATGTTA 60.038 37.037 0.00 0.00 33.81 2.41
1688 1815 9.817809 GTAGGTCTTTACATCATGTTATCTGAA 57.182 33.333 0.00 0.00 0.00 3.02
1732 1859 9.975218 ATACATAGGGTACAATTTGGATAATCC 57.025 33.333 0.78 0.00 34.07 3.01
1842 2172 4.701651 TCAGTGATGATGTTGGGATTGAAC 59.298 41.667 0.00 0.00 0.00 3.18
1859 2757 0.981183 AACTAGTGATTGCGGTCCCA 59.019 50.000 0.00 0.00 0.00 4.37
3027 5650 7.994334 AGAAGAATCTACAGAACCTCGTACTAT 59.006 37.037 0.00 0.00 32.88 2.12
3194 5819 6.267471 TGCTCATTTCCTTGGTGTTAGATTTT 59.733 34.615 0.00 0.00 0.00 1.82
3443 6084 4.031652 CAGGCACAAAACGAAAACTGAAAG 59.968 41.667 0.00 0.00 42.29 2.62
3456 6105 2.183679 ACTGAAAGGGCTCGAATCTCT 58.816 47.619 0.00 0.00 39.30 3.10
3592 6378 9.112725 TCCATATGTATGTGAAGATGTCTTTTG 57.887 33.333 1.24 0.00 32.39 2.44
3786 6578 8.862325 AAATGGACATCTCTGTTAAACATGTA 57.138 30.769 0.00 0.00 35.14 2.29
3791 6583 9.035607 GGACATCTCTGTTAAACATGTATACAG 57.964 37.037 20.50 20.50 35.14 2.74
3940 6733 2.543641 CATGAGCGACTGCATCACTTA 58.456 47.619 0.00 0.00 46.23 2.24
4005 6798 3.630312 CCTTCCTCTAGGTCTTCTTCGAG 59.370 52.174 0.00 0.00 36.34 4.04
4105 6904 1.034838 ACAAGTTGTTGGGCTTCGCA 61.035 50.000 1.64 0.00 38.07 5.10
4129 6928 2.602257 TGTACTCATCAATGCCGAGG 57.398 50.000 0.00 0.00 0.00 4.63
4192 6991 0.257328 TCCTCTCCATCTCGAGCACT 59.743 55.000 7.81 0.00 0.00 4.40
4254 7053 2.338785 GCTGCCTTTCCAGAGCACC 61.339 63.158 0.00 0.00 34.77 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.728608 GCTGTCAGTTTCAAAAAGTACACG 59.271 41.667 0.93 0.00 0.00 4.49
3 4 5.034797 GGCTGTCAGTTTCAAAAAGTACAC 58.965 41.667 0.93 0.00 0.00 2.90
4 5 4.947388 AGGCTGTCAGTTTCAAAAAGTACA 59.053 37.500 0.93 0.00 0.00 2.90
5 6 5.065988 TGAGGCTGTCAGTTTCAAAAAGTAC 59.934 40.000 0.93 0.00 0.00 2.73
6 7 5.065988 GTGAGGCTGTCAGTTTCAAAAAGTA 59.934 40.000 0.93 0.00 35.13 2.24
7 8 4.016444 TGAGGCTGTCAGTTTCAAAAAGT 58.984 39.130 0.93 0.00 0.00 2.66
8 9 4.096984 AGTGAGGCTGTCAGTTTCAAAAAG 59.903 41.667 0.93 0.00 34.98 2.27
9 10 4.016444 AGTGAGGCTGTCAGTTTCAAAAA 58.984 39.130 0.93 0.00 34.98 1.94
10 11 3.620488 AGTGAGGCTGTCAGTTTCAAAA 58.380 40.909 0.93 0.00 34.98 2.44
11 12 3.118261 AGAGTGAGGCTGTCAGTTTCAAA 60.118 43.478 0.93 0.00 39.11 2.69
12 13 2.435805 AGAGTGAGGCTGTCAGTTTCAA 59.564 45.455 0.93 0.00 39.11 2.69
13 14 2.036475 GAGAGTGAGGCTGTCAGTTTCA 59.964 50.000 0.93 3.26 39.11 2.69
14 15 2.611722 GGAGAGTGAGGCTGTCAGTTTC 60.612 54.545 0.93 0.61 39.11 2.78
15 16 1.346068 GGAGAGTGAGGCTGTCAGTTT 59.654 52.381 0.93 0.00 39.11 2.66
16 17 0.972883 GGAGAGTGAGGCTGTCAGTT 59.027 55.000 0.93 0.00 39.11 3.16
17 18 0.178950 TGGAGAGTGAGGCTGTCAGT 60.179 55.000 0.93 0.00 41.97 3.41
18 19 0.972134 TTGGAGAGTGAGGCTGTCAG 59.028 55.000 0.00 0.00 39.07 3.51
19 20 1.423584 TTTGGAGAGTGAGGCTGTCA 58.576 50.000 0.00 0.00 39.07 3.58
20 21 2.550830 TTTTGGAGAGTGAGGCTGTC 57.449 50.000 0.00 0.00 36.83 3.51
21 22 2.787994 CATTTTGGAGAGTGAGGCTGT 58.212 47.619 0.00 0.00 0.00 4.40
22 23 1.471684 GCATTTTGGAGAGTGAGGCTG 59.528 52.381 0.00 0.00 0.00 4.85
23 24 1.353694 AGCATTTTGGAGAGTGAGGCT 59.646 47.619 0.00 0.00 0.00 4.58
24 25 1.831580 AGCATTTTGGAGAGTGAGGC 58.168 50.000 0.00 0.00 0.00 4.70
25 26 5.936956 GGATATAGCATTTTGGAGAGTGAGG 59.063 44.000 0.00 0.00 0.00 3.86
26 27 6.767456 AGGATATAGCATTTTGGAGAGTGAG 58.233 40.000 0.00 0.00 0.00 3.51
27 28 6.327365 TGAGGATATAGCATTTTGGAGAGTGA 59.673 38.462 0.00 0.00 0.00 3.41
28 29 6.528321 TGAGGATATAGCATTTTGGAGAGTG 58.472 40.000 0.00 0.00 0.00 3.51
29 30 6.753913 TGAGGATATAGCATTTTGGAGAGT 57.246 37.500 0.00 0.00 0.00 3.24
30 31 6.149142 GCTTGAGGATATAGCATTTTGGAGAG 59.851 42.308 0.00 0.00 35.05 3.20
31 32 6.000219 GCTTGAGGATATAGCATTTTGGAGA 59.000 40.000 0.00 0.00 35.05 3.71
32 33 6.002704 AGCTTGAGGATATAGCATTTTGGAG 58.997 40.000 0.00 0.00 37.37 3.86
33 34 5.945310 AGCTTGAGGATATAGCATTTTGGA 58.055 37.500 0.00 0.00 37.37 3.53
34 35 5.106791 CGAGCTTGAGGATATAGCATTTTGG 60.107 44.000 0.00 0.00 37.37 3.28
35 36 5.616424 GCGAGCTTGAGGATATAGCATTTTG 60.616 44.000 4.70 0.00 37.37 2.44
36 37 4.453819 GCGAGCTTGAGGATATAGCATTTT 59.546 41.667 4.70 0.00 37.37 1.82
37 38 3.999663 GCGAGCTTGAGGATATAGCATTT 59.000 43.478 4.70 0.00 37.37 2.32
38 39 3.007290 TGCGAGCTTGAGGATATAGCATT 59.993 43.478 4.70 0.00 37.37 3.56
39 40 2.564504 TGCGAGCTTGAGGATATAGCAT 59.435 45.455 4.70 0.00 37.37 3.79
40 41 1.963515 TGCGAGCTTGAGGATATAGCA 59.036 47.619 4.70 0.00 37.37 3.49
41 42 2.333014 GTGCGAGCTTGAGGATATAGC 58.667 52.381 4.70 0.00 35.16 2.97
42 43 2.226674 TCGTGCGAGCTTGAGGATATAG 59.773 50.000 4.70 0.00 0.00 1.31
43 44 2.227194 TCGTGCGAGCTTGAGGATATA 58.773 47.619 4.70 0.00 0.00 0.86
44 45 1.032794 TCGTGCGAGCTTGAGGATAT 58.967 50.000 4.70 0.00 0.00 1.63
45 46 1.032794 ATCGTGCGAGCTTGAGGATA 58.967 50.000 4.70 0.00 0.00 2.59
46 47 0.176680 AATCGTGCGAGCTTGAGGAT 59.823 50.000 4.70 4.22 0.00 3.24
47 48 0.815095 TAATCGTGCGAGCTTGAGGA 59.185 50.000 4.70 1.95 0.00 3.71
48 49 0.924090 GTAATCGTGCGAGCTTGAGG 59.076 55.000 4.70 0.00 0.00 3.86
49 50 1.321743 GTGTAATCGTGCGAGCTTGAG 59.678 52.381 4.70 0.00 0.00 3.02
50 51 1.336424 TGTGTAATCGTGCGAGCTTGA 60.336 47.619 4.70 0.00 0.00 3.02
51 52 1.067693 TGTGTAATCGTGCGAGCTTG 58.932 50.000 0.00 0.00 0.00 4.01
52 53 1.068474 GTGTGTAATCGTGCGAGCTT 58.932 50.000 0.00 0.00 0.00 3.74
53 54 0.736325 GGTGTGTAATCGTGCGAGCT 60.736 55.000 0.00 0.00 0.00 4.09
54 55 1.708027 GGTGTGTAATCGTGCGAGC 59.292 57.895 0.00 0.00 0.00 5.03
55 56 1.410737 CCGGTGTGTAATCGTGCGAG 61.411 60.000 0.00 0.00 0.00 5.03
56 57 1.444724 CCGGTGTGTAATCGTGCGA 60.445 57.895 0.00 0.00 0.00 5.10
57 58 1.735198 ACCGGTGTGTAATCGTGCG 60.735 57.895 6.12 0.00 0.00 5.34
58 59 1.632046 CCACCGGTGTGTAATCGTGC 61.632 60.000 31.80 0.00 41.09 5.34
59 60 1.017177 CCCACCGGTGTGTAATCGTG 61.017 60.000 31.80 13.68 41.09 4.35
60 61 1.294138 CCCACCGGTGTGTAATCGT 59.706 57.895 31.80 0.00 41.09 3.73
61 62 0.738412 GACCCACCGGTGTGTAATCG 60.738 60.000 31.80 15.14 44.88 3.34
62 63 0.322322 TGACCCACCGGTGTGTAATC 59.678 55.000 31.80 20.35 44.88 1.75
63 64 0.988832 ATGACCCACCGGTGTGTAAT 59.011 50.000 31.80 23.00 44.88 1.89
64 65 0.322322 GATGACCCACCGGTGTGTAA 59.678 55.000 31.80 21.69 44.88 2.41
65 66 0.543410 AGATGACCCACCGGTGTGTA 60.543 55.000 31.80 16.08 44.88 2.90
66 67 1.841556 AGATGACCCACCGGTGTGT 60.842 57.895 31.80 27.87 44.88 3.72
67 68 1.375908 CAGATGACCCACCGGTGTG 60.376 63.158 31.80 24.51 44.88 3.82
68 69 1.415672 AACAGATGACCCACCGGTGT 61.416 55.000 31.80 15.97 44.88 4.16
69 70 0.250727 AAACAGATGACCCACCGGTG 60.251 55.000 28.26 28.26 44.88 4.94
71 72 1.019278 CGAAACAGATGACCCACCGG 61.019 60.000 0.00 0.00 0.00 5.28
72 73 0.320421 ACGAAACAGATGACCCACCG 60.320 55.000 0.00 0.00 0.00 4.94
73 74 1.156736 CACGAAACAGATGACCCACC 58.843 55.000 0.00 0.00 0.00 4.61
74 75 2.163818 TCACGAAACAGATGACCCAC 57.836 50.000 0.00 0.00 0.00 4.61
75 76 4.161377 TGATATCACGAAACAGATGACCCA 59.839 41.667 0.00 0.00 0.00 4.51
76 77 4.693283 TGATATCACGAAACAGATGACCC 58.307 43.478 0.00 0.00 0.00 4.46
77 78 5.812642 ACTTGATATCACGAAACAGATGACC 59.187 40.000 15.55 0.00 0.00 4.02
78 79 6.893958 ACTTGATATCACGAAACAGATGAC 57.106 37.500 15.55 0.00 0.00 3.06
79 80 7.772166 ACTACTTGATATCACGAAACAGATGA 58.228 34.615 15.55 0.00 0.00 2.92
80 81 7.993821 ACTACTTGATATCACGAAACAGATG 57.006 36.000 15.55 5.97 0.00 2.90
84 85 9.459640 GCTTATACTACTTGATATCACGAAACA 57.540 33.333 15.55 0.00 0.00 2.83
85 86 9.680315 AGCTTATACTACTTGATATCACGAAAC 57.320 33.333 15.55 0.00 0.00 2.78
105 106 9.082313 CCTGAATGAATTGGGTATTAAGCTTAT 57.918 33.333 7.08 0.60 0.00 1.73
106 107 7.014230 GCCTGAATGAATTGGGTATTAAGCTTA 59.986 37.037 0.86 0.86 0.00 3.09
107 108 6.183360 GCCTGAATGAATTGGGTATTAAGCTT 60.183 38.462 3.48 3.48 0.00 3.74
108 109 5.302823 GCCTGAATGAATTGGGTATTAAGCT 59.697 40.000 0.00 0.00 0.00 3.74
109 110 5.302823 AGCCTGAATGAATTGGGTATTAAGC 59.697 40.000 0.00 0.00 0.00 3.09
110 111 6.547141 TCAGCCTGAATGAATTGGGTATTAAG 59.453 38.462 0.00 0.00 0.00 1.85
111 112 6.430864 TCAGCCTGAATGAATTGGGTATTAA 58.569 36.000 0.00 0.00 0.00 1.40
112 113 6.012337 TCAGCCTGAATGAATTGGGTATTA 57.988 37.500 0.00 0.00 0.00 0.98
113 114 4.870636 TCAGCCTGAATGAATTGGGTATT 58.129 39.130 0.00 0.00 0.00 1.89
114 115 4.524802 TCAGCCTGAATGAATTGGGTAT 57.475 40.909 0.00 0.00 0.00 2.73
115 116 4.263905 ACTTCAGCCTGAATGAATTGGGTA 60.264 41.667 7.75 0.00 35.59 3.69
116 117 2.905415 TCAGCCTGAATGAATTGGGT 57.095 45.000 0.00 0.00 0.00 4.51
117 118 3.094572 ACTTCAGCCTGAATGAATTGGG 58.905 45.455 7.75 0.00 35.59 4.12
118 119 4.946157 ACTACTTCAGCCTGAATGAATTGG 59.054 41.667 7.75 0.00 35.59 3.16
119 120 5.065731 GGACTACTTCAGCCTGAATGAATTG 59.934 44.000 7.75 0.00 35.59 2.32
120 121 5.189180 GGACTACTTCAGCCTGAATGAATT 58.811 41.667 7.75 0.00 35.59 2.17
121 122 4.225942 TGGACTACTTCAGCCTGAATGAAT 59.774 41.667 7.75 0.00 35.59 2.57
122 123 3.582647 TGGACTACTTCAGCCTGAATGAA 59.417 43.478 7.75 0.00 35.59 2.57
123 124 3.173151 TGGACTACTTCAGCCTGAATGA 58.827 45.455 7.75 0.00 35.59 2.57
124 125 3.616956 TGGACTACTTCAGCCTGAATG 57.383 47.619 7.75 5.11 35.59 2.67
125 126 3.521126 ACATGGACTACTTCAGCCTGAAT 59.479 43.478 7.75 1.47 35.59 2.57
126 127 2.906389 ACATGGACTACTTCAGCCTGAA 59.094 45.455 7.00 7.00 34.79 3.02
127 128 2.540383 ACATGGACTACTTCAGCCTGA 58.460 47.619 0.00 0.00 0.00 3.86
128 129 3.005554 CAACATGGACTACTTCAGCCTG 58.994 50.000 0.00 0.00 0.00 4.85
129 130 2.616510 GCAACATGGACTACTTCAGCCT 60.617 50.000 0.00 0.00 0.00 4.58
130 131 1.740025 GCAACATGGACTACTTCAGCC 59.260 52.381 0.00 0.00 0.00 4.85
131 132 2.160417 GTGCAACATGGACTACTTCAGC 59.840 50.000 0.00 0.00 35.71 4.26
132 133 2.413112 CGTGCAACATGGACTACTTCAG 59.587 50.000 0.00 0.00 36.50 3.02
133 134 2.224185 ACGTGCAACATGGACTACTTCA 60.224 45.455 0.00 0.00 36.50 3.02
134 135 2.413837 ACGTGCAACATGGACTACTTC 58.586 47.619 0.00 0.00 36.50 3.01
135 136 2.543777 ACGTGCAACATGGACTACTT 57.456 45.000 0.00 0.00 36.50 2.24
136 137 2.674177 GCTACGTGCAACATGGACTACT 60.674 50.000 0.00 0.00 42.31 2.57
137 138 1.659098 GCTACGTGCAACATGGACTAC 59.341 52.381 0.00 0.00 42.31 2.73
138 139 1.548719 AGCTACGTGCAACATGGACTA 59.451 47.619 0.00 0.00 45.94 2.59
139 140 0.321671 AGCTACGTGCAACATGGACT 59.678 50.000 0.00 0.00 45.94 3.85
140 141 0.443869 CAGCTACGTGCAACATGGAC 59.556 55.000 0.00 0.00 45.94 4.02
141 142 0.034756 ACAGCTACGTGCAACATGGA 59.965 50.000 0.00 0.00 45.94 3.41
142 143 1.720805 TACAGCTACGTGCAACATGG 58.279 50.000 0.00 0.00 45.94 3.66
143 144 5.463499 TTATTACAGCTACGTGCAACATG 57.537 39.130 0.00 0.00 45.94 3.21
144 145 4.034048 GCTTATTACAGCTACGTGCAACAT 59.966 41.667 0.00 0.00 45.94 2.71
145 146 3.369756 GCTTATTACAGCTACGTGCAACA 59.630 43.478 0.00 0.00 45.94 3.33
146 147 3.242316 GGCTTATTACAGCTACGTGCAAC 60.242 47.826 0.00 0.00 45.94 4.17
147 148 2.933906 GGCTTATTACAGCTACGTGCAA 59.066 45.455 0.00 0.00 45.94 4.08
148 149 2.093921 TGGCTTATTACAGCTACGTGCA 60.094 45.455 0.00 0.00 45.94 4.57
149 150 2.540101 CTGGCTTATTACAGCTACGTGC 59.460 50.000 0.00 0.00 39.97 5.34
157 158 3.691118 ACACATGTGCTGGCTTATTACAG 59.309 43.478 25.68 0.00 37.76 2.74
158 159 3.684908 ACACATGTGCTGGCTTATTACA 58.315 40.909 25.68 0.00 0.00 2.41
159 160 4.414852 CAACACATGTGCTGGCTTATTAC 58.585 43.478 25.68 0.00 0.00 1.89
160 161 3.443329 CCAACACATGTGCTGGCTTATTA 59.557 43.478 29.97 0.00 39.61 0.98
161 162 2.231964 CCAACACATGTGCTGGCTTATT 59.768 45.455 29.97 11.16 39.61 1.40
162 163 1.820519 CCAACACATGTGCTGGCTTAT 59.179 47.619 29.97 5.47 39.61 1.73
163 164 1.246649 CCAACACATGTGCTGGCTTA 58.753 50.000 29.97 0.00 39.61 3.09
164 165 2.043625 CCAACACATGTGCTGGCTT 58.956 52.632 29.97 13.22 39.61 4.35
165 166 3.767816 CCAACACATGTGCTGGCT 58.232 55.556 29.97 7.67 39.61 4.75
167 168 2.652530 GGCCAACACATGTGCTGG 59.347 61.111 34.29 34.29 46.66 4.85
168 169 2.256158 CGGCCAACACATGTGCTG 59.744 61.111 25.68 22.68 0.00 4.41
169 170 3.673484 GCGGCCAACACATGTGCT 61.673 61.111 25.68 11.31 0.00 4.40
170 171 4.722855 GGCGGCCAACACATGTGC 62.723 66.667 25.68 11.54 0.00 4.57
171 172 2.638354 ATGGCGGCCAACACATGTG 61.638 57.895 27.70 24.25 36.95 3.21
172 173 2.283101 ATGGCGGCCAACACATGT 60.283 55.556 27.70 4.18 36.95 3.21
173 174 2.182284 CATGGCGGCCAACACATG 59.818 61.111 27.70 15.57 36.95 3.21
174 175 3.069946 CCATGGCGGCCAACACAT 61.070 61.111 27.70 5.93 36.95 3.21
183 184 2.623094 TAATCCTGCACCCATGGCGG 62.623 60.000 6.09 0.72 37.39 6.13
184 185 1.152984 TAATCCTGCACCCATGGCG 60.153 57.895 6.09 2.02 0.00 5.69
185 186 1.458639 GCTAATCCTGCACCCATGGC 61.459 60.000 6.09 0.00 0.00 4.40
186 187 0.184451 AGCTAATCCTGCACCCATGG 59.816 55.000 4.14 4.14 0.00 3.66
187 188 2.105477 AGTAGCTAATCCTGCACCCATG 59.895 50.000 0.00 0.00 0.00 3.66
188 189 2.105477 CAGTAGCTAATCCTGCACCCAT 59.895 50.000 0.00 0.00 0.00 4.00
189 190 1.486310 CAGTAGCTAATCCTGCACCCA 59.514 52.381 0.00 0.00 0.00 4.51
190 191 1.202698 CCAGTAGCTAATCCTGCACCC 60.203 57.143 0.00 0.00 0.00 4.61
191 192 1.486726 ACCAGTAGCTAATCCTGCACC 59.513 52.381 0.00 0.00 0.00 5.01
192 193 2.168521 TCACCAGTAGCTAATCCTGCAC 59.831 50.000 0.00 0.00 0.00 4.57
193 194 2.466846 TCACCAGTAGCTAATCCTGCA 58.533 47.619 0.00 0.00 0.00 4.41
194 195 3.462021 CTTCACCAGTAGCTAATCCTGC 58.538 50.000 0.00 0.00 0.00 4.85
195 196 3.462021 GCTTCACCAGTAGCTAATCCTG 58.538 50.000 0.00 0.00 35.51 3.86
196 197 2.101582 CGCTTCACCAGTAGCTAATCCT 59.898 50.000 0.00 0.00 36.16 3.24
197 198 2.159085 ACGCTTCACCAGTAGCTAATCC 60.159 50.000 0.00 0.00 36.16 3.01
198 199 3.117046 GACGCTTCACCAGTAGCTAATC 58.883 50.000 0.00 0.00 36.16 1.75
199 200 2.761208 AGACGCTTCACCAGTAGCTAAT 59.239 45.455 0.00 0.00 36.16 1.73
200 201 2.168496 AGACGCTTCACCAGTAGCTAA 58.832 47.619 0.00 0.00 36.16 3.09
201 202 1.835494 AGACGCTTCACCAGTAGCTA 58.165 50.000 0.00 0.00 36.16 3.32
202 203 0.969894 AAGACGCTTCACCAGTAGCT 59.030 50.000 0.00 0.00 36.16 3.32
203 204 1.461127 CAAAGACGCTTCACCAGTAGC 59.539 52.381 0.00 0.00 35.10 3.58
204 205 2.476619 CACAAAGACGCTTCACCAGTAG 59.523 50.000 0.00 0.00 0.00 2.57
205 206 2.479837 CACAAAGACGCTTCACCAGTA 58.520 47.619 0.00 0.00 0.00 2.74
206 207 1.299541 CACAAAGACGCTTCACCAGT 58.700 50.000 0.00 0.00 0.00 4.00
207 208 0.588252 CCACAAAGACGCTTCACCAG 59.412 55.000 0.00 0.00 0.00 4.00
208 209 1.444119 GCCACAAAGACGCTTCACCA 61.444 55.000 0.00 0.00 0.00 4.17
209 210 1.166531 AGCCACAAAGACGCTTCACC 61.167 55.000 0.00 0.00 0.00 4.02
210 211 0.663153 AAGCCACAAAGACGCTTCAC 59.337 50.000 0.00 0.00 38.44 3.18
211 212 0.662619 CAAGCCACAAAGACGCTTCA 59.337 50.000 0.00 0.00 40.79 3.02
212 213 0.944386 TCAAGCCACAAAGACGCTTC 59.056 50.000 0.00 0.00 40.79 3.86
213 214 0.663153 GTCAAGCCACAAAGACGCTT 59.337 50.000 0.00 0.00 43.45 4.68
214 215 0.463654 TGTCAAGCCACAAAGACGCT 60.464 50.000 0.00 0.00 33.83 5.07
215 216 0.040958 CTGTCAAGCCACAAAGACGC 60.041 55.000 0.00 0.00 33.83 5.19
216 217 0.040958 GCTGTCAAGCCACAAAGACG 60.041 55.000 0.00 0.00 44.22 4.18
217 218 3.853623 GCTGTCAAGCCACAAAGAC 57.146 52.632 0.00 0.00 44.22 3.01
227 228 2.045536 GGCAGGGAGGCTGTCAAG 60.046 66.667 0.00 0.00 40.24 3.02
228 229 2.459969 TTGGCAGGGAGGCTGTCAA 61.460 57.895 0.00 0.00 43.07 3.18
229 230 2.233566 ATTGGCAGGGAGGCTGTCA 61.234 57.895 0.00 0.00 44.55 3.58
230 231 1.751927 CATTGGCAGGGAGGCTGTC 60.752 63.158 0.00 0.00 44.55 3.51
231 232 1.207488 TACATTGGCAGGGAGGCTGT 61.207 55.000 0.00 0.00 44.55 4.40
232 233 0.034186 TTACATTGGCAGGGAGGCTG 60.034 55.000 0.00 0.00 44.55 4.85
233 234 0.034089 GTTACATTGGCAGGGAGGCT 60.034 55.000 0.00 0.00 44.55 4.58
234 235 1.037579 GGTTACATTGGCAGGGAGGC 61.038 60.000 0.00 0.00 44.50 4.70
235 236 0.625849 AGGTTACATTGGCAGGGAGG 59.374 55.000 0.00 0.00 0.00 4.30
236 237 1.004745 ACAGGTTACATTGGCAGGGAG 59.995 52.381 0.00 0.00 0.00 4.30
237 238 1.072266 ACAGGTTACATTGGCAGGGA 58.928 50.000 0.00 0.00 0.00 4.20
238 239 1.176527 CACAGGTTACATTGGCAGGG 58.823 55.000 0.00 0.00 0.00 4.45
239 240 1.812571 GACACAGGTTACATTGGCAGG 59.187 52.381 0.00 0.00 0.00 4.85
240 241 2.503331 TGACACAGGTTACATTGGCAG 58.497 47.619 0.00 0.00 0.00 4.85
241 242 2.647683 TGACACAGGTTACATTGGCA 57.352 45.000 0.00 0.00 0.00 4.92
242 243 4.142469 GGTTATGACACAGGTTACATTGGC 60.142 45.833 0.00 0.00 0.00 4.52
243 244 4.094294 CGGTTATGACACAGGTTACATTGG 59.906 45.833 0.00 0.00 0.00 3.16
244 245 4.094294 CCGGTTATGACACAGGTTACATTG 59.906 45.833 0.00 0.00 0.00 2.82
245 246 4.258543 CCGGTTATGACACAGGTTACATT 58.741 43.478 0.00 0.00 0.00 2.71
246 247 3.869065 CCGGTTATGACACAGGTTACAT 58.131 45.455 0.00 0.00 0.00 2.29
247 248 2.613474 GCCGGTTATGACACAGGTTACA 60.613 50.000 1.90 0.00 0.00 2.41
248 249 2.004733 GCCGGTTATGACACAGGTTAC 58.995 52.381 1.90 0.00 0.00 2.50
249 250 1.624312 TGCCGGTTATGACACAGGTTA 59.376 47.619 1.90 0.00 0.00 2.85
250 251 0.398696 TGCCGGTTATGACACAGGTT 59.601 50.000 1.90 0.00 0.00 3.50
251 252 0.036388 CTGCCGGTTATGACACAGGT 60.036 55.000 1.90 0.00 0.00 4.00
252 253 0.036388 ACTGCCGGTTATGACACAGG 60.036 55.000 1.90 1.90 31.09 4.00
253 254 1.732259 GAACTGCCGGTTATGACACAG 59.268 52.381 1.90 1.08 38.41 3.66
254 255 1.346395 AGAACTGCCGGTTATGACACA 59.654 47.619 1.90 0.00 38.41 3.72
255 256 1.732259 CAGAACTGCCGGTTATGACAC 59.268 52.381 5.06 0.00 46.50 3.67
256 257 2.093306 CAGAACTGCCGGTTATGACA 57.907 50.000 5.06 0.00 46.50 3.58
271 272 2.666317 TCCATCTAGATCACGGCAGAA 58.334 47.619 1.03 0.00 0.00 3.02
327 328 8.797674 ACATTCCCCCTAGAAATATAAAAAGGA 58.202 33.333 0.00 0.00 0.00 3.36
332 333 7.724061 GCTCAACATTCCCCCTAGAAATATAAA 59.276 37.037 0.00 0.00 0.00 1.40
333 334 7.231467 GCTCAACATTCCCCCTAGAAATATAA 58.769 38.462 0.00 0.00 0.00 0.98
334 335 6.240176 GGCTCAACATTCCCCCTAGAAATATA 60.240 42.308 0.00 0.00 0.00 0.86
335 336 5.458215 GGCTCAACATTCCCCCTAGAAATAT 60.458 44.000 0.00 0.00 0.00 1.28
336 337 4.141251 GGCTCAACATTCCCCCTAGAAATA 60.141 45.833 0.00 0.00 0.00 1.40
337 338 3.373110 GGCTCAACATTCCCCCTAGAAAT 60.373 47.826 0.00 0.00 0.00 2.17
346 347 5.201243 ACTAATTAAGGGCTCAACATTCCC 58.799 41.667 0.00 0.00 40.36 3.97
378 379 4.803613 CGGCCCAAATTTTATTGTAGAAGC 59.196 41.667 0.00 0.00 0.00 3.86
398 399 0.163788 CATTCGTCGGATATTGCGGC 59.836 55.000 0.00 0.00 30.70 6.53
425 426 8.618677 ACGAAGAAACTATCGAATCATACTGTA 58.381 33.333 1.84 0.00 41.43 2.74
427 428 7.916128 ACGAAGAAACTATCGAATCATACTG 57.084 36.000 1.84 0.00 41.43 2.74
450 451 3.297830 AAGAAATTGCCCTGCGTTTAC 57.702 42.857 0.00 0.00 0.00 2.01
514 517 7.754851 TTTTCAACTTTACCCCATAGAAGAC 57.245 36.000 0.00 0.00 0.00 3.01
544 547 0.677842 GATGGATGGCAAGGGAATGC 59.322 55.000 0.00 0.00 45.67 3.56
550 553 0.031817 AAAGGGGATGGATGGCAAGG 60.032 55.000 0.00 0.00 0.00 3.61
558 561 0.620556 GTCAGCTGAAAGGGGATGGA 59.379 55.000 20.19 0.00 0.00 3.41
559 562 0.745845 CGTCAGCTGAAAGGGGATGG 60.746 60.000 20.19 0.00 0.00 3.51
560 563 0.036010 ACGTCAGCTGAAAGGGGATG 60.036 55.000 20.19 2.20 0.00 3.51
561 564 0.693049 AACGTCAGCTGAAAGGGGAT 59.307 50.000 20.19 0.00 0.00 3.85
597 600 8.908786 TGACATACCAATCCAGATTTCTTATC 57.091 34.615 0.00 0.00 0.00 1.75
602 605 7.999679 TGATTTGACATACCAATCCAGATTTC 58.000 34.615 0.00 0.00 0.00 2.17
607 610 5.653769 ACCTTGATTTGACATACCAATCCAG 59.346 40.000 0.00 0.00 0.00 3.86
609 612 5.163519 CCACCTTGATTTGACATACCAATCC 60.164 44.000 0.00 0.00 0.00 3.01
678 694 3.142393 CTACTGGATCTGCCCCGG 58.858 66.667 0.00 0.00 34.97 5.73
679 695 2.423446 GCTACTGGATCTGCCCCG 59.577 66.667 0.00 0.00 34.97 5.73
754 786 1.066257 CTGTGTTGGGTGCAAGTGC 59.934 57.895 0.00 0.00 42.50 4.40
758 790 1.077140 TGCTCTGTGTTGGGTGCAA 60.077 52.632 0.00 0.00 0.00 4.08
759 791 1.526686 CTGCTCTGTGTTGGGTGCA 60.527 57.895 0.00 0.00 0.00 4.57
760 792 1.227943 TCTGCTCTGTGTTGGGTGC 60.228 57.895 0.00 0.00 0.00 5.01
761 793 0.179048 TGTCTGCTCTGTGTTGGGTG 60.179 55.000 0.00 0.00 0.00 4.61
762 794 0.107456 CTGTCTGCTCTGTGTTGGGT 59.893 55.000 0.00 0.00 0.00 4.51
763 795 0.394192 TCTGTCTGCTCTGTGTTGGG 59.606 55.000 0.00 0.00 0.00 4.12
764 796 1.202568 TGTCTGTCTGCTCTGTGTTGG 60.203 52.381 0.00 0.00 0.00 3.77
765 797 2.133553 CTGTCTGTCTGCTCTGTGTTG 58.866 52.381 0.00 0.00 0.00 3.33
766 798 1.759445 ACTGTCTGTCTGCTCTGTGTT 59.241 47.619 0.00 0.00 0.00 3.32
767 799 1.068281 CACTGTCTGTCTGCTCTGTGT 59.932 52.381 0.00 0.00 0.00 3.72
768 800 1.604947 CCACTGTCTGTCTGCTCTGTG 60.605 57.143 0.00 0.00 0.00 3.66
769 801 0.678395 CCACTGTCTGTCTGCTCTGT 59.322 55.000 0.00 0.00 0.00 3.41
770 802 0.037512 CCCACTGTCTGTCTGCTCTG 60.038 60.000 0.00 0.00 0.00 3.35
771 803 1.825281 GCCCACTGTCTGTCTGCTCT 61.825 60.000 0.00 0.00 0.00 4.09
772 804 1.375268 GCCCACTGTCTGTCTGCTC 60.375 63.158 0.00 0.00 0.00 4.26
773 805 1.414061 AAGCCCACTGTCTGTCTGCT 61.414 55.000 0.00 0.00 35.00 4.24
774 806 0.952984 GAAGCCCACTGTCTGTCTGC 60.953 60.000 0.00 0.00 0.00 4.26
816 848 2.280186 GATGCGGATGGACGGGAC 60.280 66.667 0.00 0.00 0.00 4.46
817 849 3.546543 GGATGCGGATGGACGGGA 61.547 66.667 0.00 0.00 0.00 5.14
818 850 4.969196 CGGATGCGGATGGACGGG 62.969 72.222 0.00 0.00 0.00 5.28
842 874 6.549736 AGAACTAACCTTTGTTTATTGGTGCT 59.450 34.615 0.00 0.00 35.87 4.40
855 906 6.176014 AGTACTGAGCAAGAACTAACCTTT 57.824 37.500 0.00 0.00 0.00 3.11
875 926 7.175119 CCGAGATTTGAGATGGTGATAGTAGTA 59.825 40.741 0.00 0.00 0.00 1.82
876 927 6.015856 CCGAGATTTGAGATGGTGATAGTAGT 60.016 42.308 0.00 0.00 0.00 2.73
877 928 6.385843 CCGAGATTTGAGATGGTGATAGTAG 58.614 44.000 0.00 0.00 0.00 2.57
939 990 1.636003 AGAGTGGGAAAAGGGATGACC 59.364 52.381 0.00 0.00 40.67 4.02
940 991 2.305927 TGAGAGTGGGAAAAGGGATGAC 59.694 50.000 0.00 0.00 0.00 3.06
947 998 1.630244 CGCGCTGAGAGTGGGAAAAG 61.630 60.000 5.56 0.00 40.59 2.27
949 1000 2.048222 CGCGCTGAGAGTGGGAAA 60.048 61.111 5.56 0.00 40.59 3.13
971 1029 3.934962 GGCTCCTGGATCCGAGGC 61.935 72.222 21.83 21.83 43.39 4.70
1170 1252 2.497138 CAGACACAGACAGGCAATGAA 58.503 47.619 0.00 0.00 0.00 2.57
1171 1253 1.271001 CCAGACACAGACAGGCAATGA 60.271 52.381 0.00 0.00 0.00 2.57
1172 1254 1.162698 CCAGACACAGACAGGCAATG 58.837 55.000 0.00 0.00 0.00 2.82
1174 1256 1.227943 GCCAGACACAGACAGGCAA 60.228 57.895 0.00 0.00 44.59 4.52
1176 1258 1.670406 CAGCCAGACACAGACAGGC 60.670 63.158 0.00 0.00 45.54 4.85
1177 1259 0.107456 AACAGCCAGACACAGACAGG 59.893 55.000 0.00 0.00 0.00 4.00
1178 1260 1.869767 GAAACAGCCAGACACAGACAG 59.130 52.381 0.00 0.00 0.00 3.51
1179 1261 1.475034 GGAAACAGCCAGACACAGACA 60.475 52.381 0.00 0.00 0.00 3.41
1182 1264 0.109342 AGGGAAACAGCCAGACACAG 59.891 55.000 0.00 0.00 0.00 3.66
1183 1265 0.108585 GAGGGAAACAGCCAGACACA 59.891 55.000 0.00 0.00 0.00 3.72
1184 1266 0.398318 AGAGGGAAACAGCCAGACAC 59.602 55.000 0.00 0.00 0.00 3.67
1227 1315 4.314440 TGGACTCACTGCCCACGC 62.314 66.667 0.00 0.00 0.00 5.34
1339 1438 1.238439 TCTTGCAGGAAGCTTTTCCG 58.762 50.000 0.00 0.00 45.64 4.30
1383 1482 7.315247 TCATTTGACTAATTACCATGAACCG 57.685 36.000 0.00 0.00 0.00 4.44
1409 1528 3.834610 ACGAAGAGTACCAACGATCAAG 58.165 45.455 0.00 0.00 0.00 3.02
1526 1645 6.506538 AGCATTGATCCAATCTACTAACCT 57.493 37.500 0.00 0.00 31.05 3.50
1553 1676 0.323725 AGCACGGGAAGGCATGAAAT 60.324 50.000 0.00 0.00 0.00 2.17
1561 1684 0.107508 ACATGATGAGCACGGGAAGG 60.108 55.000 0.00 0.00 0.00 3.46
1574 1697 0.895530 AGGGACGACGACAACATGAT 59.104 50.000 0.00 0.00 0.00 2.45
1627 1753 3.753272 AGCACATGTTGTTTAGCGAATCT 59.247 39.130 0.00 0.00 0.00 2.40
1632 1758 3.488489 GGTAAGCACATGTTGTTTAGCG 58.512 45.455 0.00 0.00 38.91 4.26
1682 1809 7.595819 TGTTGTCAAATTTAAGGGTTCAGAT 57.404 32.000 0.00 0.00 0.00 2.90
1688 1815 8.966868 CCTATGTATGTTGTCAAATTTAAGGGT 58.033 33.333 0.00 0.00 0.00 4.34
1732 1859 8.619146 ATGCTTTGATTAATTGTTACACGATG 57.381 30.769 0.00 0.00 0.00 3.84
1787 1928 5.127682 AGGCAATTCATAAACTTCCATGTCC 59.872 40.000 0.00 0.00 0.00 4.02
1788 1929 6.096001 AGAGGCAATTCATAAACTTCCATGTC 59.904 38.462 0.00 0.00 0.00 3.06
1842 2172 2.107950 TTTGGGACCGCAATCACTAG 57.892 50.000 0.36 0.00 0.00 2.57
1859 2757 5.944007 GGTCATACCAGTCTTTGTACCATTT 59.056 40.000 0.00 0.00 38.42 2.32
1953 4351 1.135859 AGACAAGTACGCGGTAAGTCG 60.136 52.381 12.47 0.00 0.00 4.18
2489 5086 0.310854 CCTTGCGTCTTGTTTCCCAC 59.689 55.000 0.00 0.00 0.00 4.61
3194 5819 6.000219 AGAGTATGCTGCTGAGAAAGAAAAA 59.000 36.000 0.00 0.00 0.00 1.94
3443 6084 1.522580 GGCACAGAGATTCGAGCCC 60.523 63.158 0.00 0.00 36.17 5.19
3456 6105 1.827789 GGCTTGTTCCAGTGGCACA 60.828 57.895 21.41 10.88 0.00 4.57
3497 6283 7.605309 TGATAGCATCACCTCATACATTCAATC 59.395 37.037 0.00 0.00 33.59 2.67
3592 6378 4.479786 ACTTGGAGGCTCAGTATTTCTC 57.520 45.455 17.69 0.00 0.00 2.87
3850 6642 7.446001 TTGTATGTGTGCTGAACATGATTAA 57.554 32.000 0.00 0.00 41.97 1.40
3851 6643 7.628769 ATTGTATGTGTGCTGAACATGATTA 57.371 32.000 0.00 0.00 41.97 1.75
3852 6644 5.963176 TTGTATGTGTGCTGAACATGATT 57.037 34.783 0.00 0.00 41.97 2.57
4005 6798 4.214971 AGCATTATCATCATCGTCAAAGCC 59.785 41.667 0.00 0.00 0.00 4.35
4046 6839 1.421485 GCAAGCTTGACGACGATGG 59.579 57.895 30.39 0.00 0.00 3.51
4105 6904 3.002791 CGGCATTGATGAGTACAACACT 58.997 45.455 0.00 0.00 41.47 3.55
4192 6991 2.291043 GGAGAAGGCCCGTCAGGAA 61.291 63.158 0.00 0.00 41.02 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.