Multiple sequence alignment - TraesCS5A01G192700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G192700 chr5A 100.000 2880 0 0 1 2880 396228969 396231848 0.000000e+00 5319.0
1 TraesCS5A01G192700 chr5A 85.161 465 60 5 374 830 671879361 671878898 4.350000e-128 468.0
2 TraesCS5A01G192700 chr5A 88.350 103 11 1 219 321 267898003 267897902 3.900000e-24 122.0
3 TraesCS5A01G192700 chr5D 96.905 2359 66 5 1 2358 504577941 504575589 0.000000e+00 3945.0
4 TraesCS5A01G192700 chr5D 87.633 283 27 4 1728 2006 549812497 549812219 3.580000e-84 322.0
5 TraesCS5A01G192700 chr5D 89.744 156 12 2 2203 2358 463025939 463026090 2.260000e-46 196.0
6 TraesCS5A01G192700 chr4B 95.971 2358 90 3 1 2358 349150121 349152473 0.000000e+00 3823.0
7 TraesCS5A01G192700 chr4B 95.380 303 12 1 2359 2659 107655129 107654827 5.580000e-132 481.0
8 TraesCS5A01G192700 chr4B 93.770 305 15 1 2359 2659 646311689 646311993 3.380000e-124 455.0
9 TraesCS5A01G192700 chr4B 93.750 176 4 1 2712 2880 646311993 646312168 1.020000e-64 257.0
10 TraesCS5A01G192700 chr4B 91.282 195 6 3 2693 2880 107654842 107654652 3.680000e-64 255.0
11 TraesCS5A01G192700 chr4B 94.872 156 6 1 2203 2358 188189446 188189293 2.870000e-60 243.0
12 TraesCS5A01G192700 chr4B 86.857 175 8 6 2046 2207 188189654 188189482 6.340000e-42 182.0
13 TraesCS5A01G192700 chr5B 95.174 1554 52 2 1 1554 100026420 100027950 0.000000e+00 2433.0
14 TraesCS5A01G192700 chr5B 92.453 689 19 5 1671 2358 100027946 100028602 0.000000e+00 953.0
15 TraesCS5A01G192700 chr5B 85.185 540 69 7 374 905 599961500 599962036 7.020000e-151 544.0
16 TraesCS5A01G192700 chr5B 95.410 305 10 1 2359 2659 694268226 694268530 1.550000e-132 483.0
17 TraesCS5A01G192700 chr5B 91.795 195 5 4 2693 2880 694268515 694268705 7.920000e-66 261.0
18 TraesCS5A01G192700 chr5B 88.000 175 8 5 2046 2207 335522232 335522058 8.140000e-46 195.0
19 TraesCS5A01G192700 chr1A 95.532 940 42 0 1279 2218 137799635 137798696 0.000000e+00 1504.0
20 TraesCS5A01G192700 chr1A 95.114 614 27 3 1 614 137803562 137802952 0.000000e+00 965.0
21 TraesCS5A01G192700 chr1A 94.502 582 29 2 663 1243 137800207 137799628 0.000000e+00 894.0
22 TraesCS5A01G192700 chr7A 86.528 1106 93 15 1137 2207 642891056 642892140 0.000000e+00 1166.0
23 TraesCS5A01G192700 chr7A 90.519 675 47 9 412 1075 642890390 642891058 0.000000e+00 876.0
24 TraesCS5A01G192700 chr7A 92.053 151 9 2 2203 2353 642892181 642892328 2.910000e-50 209.0
25 TraesCS5A01G192700 chr6D 88.235 816 90 4 396 1207 465420062 465419249 0.000000e+00 970.0
26 TraesCS5A01G192700 chr6D 84.746 118 16 2 114 231 465420548 465420433 1.810000e-22 117.0
27 TraesCS5A01G192700 chr2D 88.411 535 30 15 2359 2880 91219621 91219106 1.470000e-172 616.0
28 TraesCS5A01G192700 chr2D 82.266 203 28 7 121 321 588722938 588723134 4.940000e-38 169.0
29 TraesCS5A01G192700 chr6A 85.000 540 70 7 374 905 51768760 51768224 3.270000e-149 538.0
30 TraesCS5A01G192700 chr2A 91.003 289 23 3 79 366 526302902 526303188 1.250000e-103 387.0
31 TraesCS5A01G192700 chr3A 88.339 283 25 4 1728 2006 156130359 156130081 1.650000e-87 333.0
32 TraesCS5A01G192700 chr3A 79.418 481 73 18 1235 1712 156130889 156130432 1.670000e-82 316.0
33 TraesCS5A01G192700 chr6B 88.256 281 21 4 1620 1890 109102135 109102413 2.770000e-85 326.0
34 TraesCS5A01G192700 chr6B 87.742 155 17 2 2203 2357 698334300 698334452 2.280000e-41 180.0
35 TraesCS5A01G192700 chr6B 80.628 191 31 6 121 309 462173500 462173686 2.990000e-30 143.0
36 TraesCS5A01G192700 chr2B 91.257 183 15 1 2359 2541 496330057 496330238 6.160000e-62 248.0
37 TraesCS5A01G192700 chr3D 89.706 136 12 1 2203 2338 535690675 535690808 3.820000e-39 172.0
38 TraesCS5A01G192700 chr3D 89.552 134 12 1 2203 2336 32183903 32183772 4.940000e-38 169.0
39 TraesCS5A01G192700 chr3D 88.525 61 0 6 314 368 571697219 571697160 1.850000e-07 67.6
40 TraesCS5A01G192700 chr7D 87.162 148 15 3 175 321 531821176 531821032 6.380000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G192700 chr5A 396228969 396231848 2879 False 5319.000000 5319 100.000000 1 2880 1 chr5A.!!$F1 2879
1 TraesCS5A01G192700 chr5D 504575589 504577941 2352 True 3945.000000 3945 96.905000 1 2358 1 chr5D.!!$R1 2357
2 TraesCS5A01G192700 chr4B 349150121 349152473 2352 False 3823.000000 3823 95.971000 1 2358 1 chr4B.!!$F1 2357
3 TraesCS5A01G192700 chr5B 100026420 100028602 2182 False 1693.000000 2433 93.813500 1 2358 2 chr5B.!!$F2 2357
4 TraesCS5A01G192700 chr5B 599961500 599962036 536 False 544.000000 544 85.185000 374 905 1 chr5B.!!$F1 531
5 TraesCS5A01G192700 chr1A 137798696 137803562 4866 True 1121.000000 1504 95.049333 1 2218 3 chr1A.!!$R1 2217
6 TraesCS5A01G192700 chr7A 642890390 642892328 1938 False 750.333333 1166 89.700000 412 2353 3 chr7A.!!$F1 1941
7 TraesCS5A01G192700 chr6D 465419249 465420548 1299 True 543.500000 970 86.490500 114 1207 2 chr6D.!!$R1 1093
8 TraesCS5A01G192700 chr2D 91219106 91219621 515 True 616.000000 616 88.411000 2359 2880 1 chr2D.!!$R1 521
9 TraesCS5A01G192700 chr6A 51768224 51768760 536 True 538.000000 538 85.000000 374 905 1 chr6A.!!$R1 531
10 TraesCS5A01G192700 chr3A 156130081 156130889 808 True 324.500000 333 83.878500 1235 2006 2 chr3A.!!$R1 771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
901 3933 0.686789 CCATGACATCGGCCATCCTA 59.313 55.0 2.24 0.0 0.0 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2528 5704 0.038159 GACGTCAAGGGAGGACACTG 60.038 60.0 11.55 0.0 34.97 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.122501 TGAAGTGCAGATTCTATTATGGCAAAA 59.877 33.333 11.71 0.00 0.00 2.44
90 91 2.270434 TCAAAGGACAGGAGGGCTAT 57.730 50.000 0.00 0.00 0.00 2.97
131 132 5.552178 AGATTAACCTCACCACTTCTTGAC 58.448 41.667 0.00 0.00 0.00 3.18
185 186 4.641954 CACTTATAGTCTTTGCTTGTGCG 58.358 43.478 0.00 0.00 43.34 5.34
192 193 3.123050 GTCTTTGCTTGTGCGGATTTTT 58.877 40.909 0.00 0.00 43.34 1.94
193 194 4.037446 AGTCTTTGCTTGTGCGGATTTTTA 59.963 37.500 0.00 0.00 43.34 1.52
231 232 7.738437 ACAAGGTATTTGATGAAAATCCCAT 57.262 32.000 0.00 0.00 36.85 4.00
238 239 5.661503 TTGATGAAAATCCCATAGGGCTA 57.338 39.130 0.00 0.00 43.94 3.93
436 766 6.208204 AGCTTTGCTTGTGTTCTATTTGATCT 59.792 34.615 0.00 0.00 33.89 2.75
437 767 6.525976 GCTTTGCTTGTGTTCTATTTGATCTC 59.474 38.462 0.00 0.00 0.00 2.75
830 3862 6.418101 CCATTTTCTTACCTCAATCTCAGGA 58.582 40.000 0.00 0.00 34.75 3.86
901 3933 0.686789 CCATGACATCGGCCATCCTA 59.313 55.000 2.24 0.00 0.00 2.94
1036 4077 3.498841 GGAGGATCGACTAGGAAGGATCA 60.499 52.174 13.17 0.00 37.59 2.92
1081 4122 0.779997 AAGGGTGCCACCAAGATCTT 59.220 50.000 17.22 6.35 41.02 2.40
1188 4231 1.960040 ATGCGATCGAGTTGGAGGCA 61.960 55.000 21.57 3.72 34.95 4.75
1224 4267 5.734498 CAGATTCCTTTACAAATTCGAAGCG 59.266 40.000 3.35 0.00 0.00 4.68
1374 4417 0.034059 CCGTTGAGGAGCTTGTCAGT 59.966 55.000 0.00 0.00 45.00 3.41
1503 4555 4.653868 TCTCTGACTCTTAACTTCTCGGT 58.346 43.478 0.00 0.00 0.00 4.69
1538 4590 4.084265 CACCACATGCTCTTGCCA 57.916 55.556 0.00 0.00 38.71 4.92
1583 4635 5.560966 ATGTTGTATGTTTCGGAATGACC 57.439 39.130 0.00 0.00 0.00 4.02
1649 4701 0.774908 TAAGGGTGTTGGGAAGGTGG 59.225 55.000 0.00 0.00 0.00 4.61
1714 4766 0.397957 TAATAGCGGACCAGAGGCCA 60.398 55.000 5.01 0.00 0.00 5.36
1755 4864 2.050269 CTGGACCACGACAAGGACT 58.950 57.895 0.00 0.00 0.00 3.85
1790 4899 1.202879 TCCGCCATGTGGGATTATTCC 60.203 52.381 0.54 0.00 40.01 3.01
2119 5251 3.070590 TGGAGAGCTATCCATGACATGTG 59.929 47.826 26.10 6.19 44.56 3.21
2129 5261 2.097036 CATGACATGTGTGGGAGCAAT 58.903 47.619 1.15 0.00 0.00 3.56
2187 5319 5.484173 TTTAGAGTTCGGCTGCAATAATG 57.516 39.130 0.50 0.00 0.00 1.90
2358 5534 9.096823 TGTTTCAGGGTTAGTCTCTATTCTTAA 57.903 33.333 0.00 0.00 0.00 1.85
2359 5535 9.589111 GTTTCAGGGTTAGTCTCTATTCTTAAG 57.411 37.037 0.00 0.00 0.00 1.85
2360 5536 9.543231 TTTCAGGGTTAGTCTCTATTCTTAAGA 57.457 33.333 0.00 0.00 0.00 2.10
2361 5537 9.543231 TTCAGGGTTAGTCTCTATTCTTAAGAA 57.457 33.333 19.83 19.83 38.56 2.52
2372 5548 7.117812 TCTCTATTCTTAAGAACAGCGTTTTGG 59.882 37.037 19.94 4.38 36.80 3.28
2375 5551 4.382291 TCTTAAGAACAGCGTTTTGGCTA 58.618 39.130 1.68 0.00 42.53 3.93
2401 5577 1.336131 CCAGCTGCTCCTGCTATCTA 58.664 55.000 8.66 0.00 36.55 1.98
2435 5611 0.804364 GCATCGTGATGTGAGCCAAA 59.196 50.000 11.23 0.00 40.80 3.28
2502 5678 6.040247 ACATAATGTACTGACATGTACCACG 58.960 40.000 0.00 0.00 45.93 4.94
2523 5699 0.109342 ACAGGAAGCCAACTGTCAGG 59.891 55.000 4.53 0.00 44.08 3.86
2530 5706 2.924185 CCAACTGTCAGGCACTCAG 58.076 57.895 4.53 0.00 34.60 3.35
2531 5707 0.107456 CCAACTGTCAGGCACTCAGT 59.893 55.000 4.53 3.39 43.95 3.41
2543 5719 1.342074 CACTCAGTGTCCTCCCTTGA 58.658 55.000 0.00 0.00 0.00 3.02
2554 5730 1.340600 CCTCCCTTGACGTCTCTCTCT 60.341 57.143 17.92 0.00 0.00 3.10
2564 5740 7.392494 TTGACGTCTCTCTCTGTAATAATGT 57.608 36.000 17.92 0.00 0.00 2.71
2572 5748 5.473846 TCTCTCTGTAATAATGTCTAGCCGG 59.526 44.000 0.00 0.00 0.00 6.13
2574 5750 3.895656 TCTGTAATAATGTCTAGCCGGCT 59.104 43.478 34.85 34.85 0.00 5.52
2615 5791 4.463879 CCTCTGCTCCGGTGCCAG 62.464 72.222 24.73 20.12 0.00 4.85
2622 5798 1.372087 GCTCCGGTGCCAGATCAAAG 61.372 60.000 17.73 0.00 0.00 2.77
2650 5826 1.022735 CATCCTTCTCATGTGCAGGC 58.977 55.000 8.41 0.00 0.00 4.85
2696 5872 2.756042 AAGCTGGTGTGGAGGTGCA 61.756 57.895 0.00 0.00 0.00 4.57
2697 5873 2.670934 GCTGGTGTGGAGGTGCAG 60.671 66.667 0.00 0.00 0.00 4.41
2698 5874 2.033141 CTGGTGTGGAGGTGCAGG 59.967 66.667 0.00 0.00 0.00 4.85
2699 5875 4.269523 TGGTGTGGAGGTGCAGGC 62.270 66.667 0.00 0.00 0.00 4.85
2732 5908 1.837538 GCGGCAACAAACACGAGCTA 61.838 55.000 0.00 0.00 0.00 3.32
2740 5916 3.050619 ACAAACACGAGCTAGACGAAAG 58.949 45.455 14.71 7.87 34.70 2.62
2754 5930 4.759782 AGACGAAAGATTGAATCCATCGT 58.240 39.130 25.69 25.69 46.70 3.73
2808 5984 0.231534 CGTGCTGAGATGCATTAGCG 59.768 55.000 19.77 8.58 45.23 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.683681 TGCCATAATAGAATCTGCACTTCA 58.316 37.500 6.95 0.00 0.00 3.02
131 132 2.226674 GGCACCGGAAAGAGAGAAAAAG 59.773 50.000 9.46 0.00 0.00 2.27
185 186 6.901265 TGTAGGCGTACAAAACTAAAAATCC 58.099 36.000 16.50 0.00 36.15 3.01
192 193 4.605640 ACCTTGTAGGCGTACAAAACTA 57.394 40.909 26.74 9.86 46.28 2.24
193 194 3.480505 ACCTTGTAGGCGTACAAAACT 57.519 42.857 26.74 13.05 46.28 2.66
231 232 0.105453 CTCCTTCCCTGCTAGCCCTA 60.105 60.000 13.29 0.00 0.00 3.53
238 239 0.413832 TAGACCACTCCTTCCCTGCT 59.586 55.000 0.00 0.00 0.00 4.24
437 767 5.323900 TCTTTTCTTATTCGCATTCGCAAG 58.676 37.500 0.00 0.00 38.40 4.01
901 3933 1.613630 AGGAGCGGAAGGGACACAT 60.614 57.895 0.00 0.00 0.00 3.21
974 4015 1.887707 GAGAAAATCCGGCGGCGAT 60.888 57.895 34.49 20.52 0.00 4.58
975 4016 2.510691 GAGAAAATCCGGCGGCGA 60.511 61.111 34.49 19.10 0.00 5.54
999 4040 1.632018 CCTCCCAAACGCCTCCCATA 61.632 60.000 0.00 0.00 0.00 2.74
1036 4077 0.250338 GTCTTCTCCAGGTGCCGTTT 60.250 55.000 0.00 0.00 0.00 3.60
1188 4231 7.453393 TGTAAAGGAATCTGTTGTCTGAATCT 58.547 34.615 0.00 0.00 0.00 2.40
1243 4286 1.876497 GCGCCCTTCATTTCCTTGCA 61.876 55.000 0.00 0.00 0.00 4.08
1358 4401 2.563179 GTCCTACTGACAAGCTCCTCAA 59.437 50.000 0.00 0.00 43.85 3.02
1374 4417 2.829003 CGGGAGCAGCTCGTCCTA 60.829 66.667 16.47 0.00 35.19 2.94
1452 4496 2.046988 CCTGCCAGATGTGCACGA 60.047 61.111 13.13 1.58 34.46 4.35
1583 4635 1.615107 GAAGGCAAGGACGTTCGTCG 61.615 60.000 17.03 6.78 46.00 5.12
1587 4639 0.321996 AGGAGAAGGCAAGGACGTTC 59.678 55.000 0.00 0.00 35.24 3.95
1649 4701 4.083110 CCTGACCATCTTGTTCACATTGAC 60.083 45.833 0.00 0.00 0.00 3.18
1714 4766 1.615384 GCTCCCTGATCTTGCCAAGTT 60.615 52.381 4.04 0.00 0.00 2.66
1790 4899 5.278660 CCTGAAGGAATTGTGAAAGGTCAAG 60.279 44.000 0.00 0.00 34.21 3.02
1927 5036 5.656416 TCAGGAAGAAGACCACAAAACAAAT 59.344 36.000 0.00 0.00 0.00 2.32
2119 5251 2.046285 CCGGTTCCATTGCTCCCAC 61.046 63.158 0.00 0.00 0.00 4.61
2129 5261 0.325296 ATCTAGCACCTCCGGTTCCA 60.325 55.000 0.00 0.00 31.02 3.53
2187 5319 7.939784 AGGTTGTACCATCCTAAAAGATTTC 57.060 36.000 0.00 0.00 41.95 2.17
2358 5534 1.235724 GGTAGCCAAAACGCTGTTCT 58.764 50.000 0.00 0.00 40.08 3.01
2359 5535 0.110373 CGGTAGCCAAAACGCTGTTC 60.110 55.000 0.00 0.00 40.08 3.18
2360 5536 0.533308 TCGGTAGCCAAAACGCTGTT 60.533 50.000 0.00 0.00 40.08 3.16
2361 5537 0.949105 CTCGGTAGCCAAAACGCTGT 60.949 55.000 0.00 0.00 40.08 4.40
2391 5567 7.925483 GCTCTATTGAATGGTATAGATAGCAGG 59.075 40.741 7.43 0.00 43.10 4.85
2401 5577 6.101650 TCACGATGCTCTATTGAATGGTAT 57.898 37.500 0.00 0.00 0.00 2.73
2435 5611 7.595819 TGTGGTATTTCCTCAAAAACTGAAT 57.404 32.000 0.00 0.00 36.86 2.57
2502 5678 2.417719 CTGACAGTTGGCTTCCTGTAC 58.582 52.381 0.00 0.00 41.80 2.90
2507 5683 3.673599 GCCTGACAGTTGGCTTCC 58.326 61.111 10.33 0.00 45.26 3.46
2523 5699 0.321122 CAAGGGAGGACACTGAGTGC 60.321 60.000 13.37 5.50 36.98 4.40
2524 5700 1.001406 GTCAAGGGAGGACACTGAGTG 59.999 57.143 11.70 11.70 39.75 3.51
2525 5701 1.343069 GTCAAGGGAGGACACTGAGT 58.657 55.000 0.00 0.00 35.36 3.41
2526 5702 0.244994 CGTCAAGGGAGGACACTGAG 59.755 60.000 0.00 0.00 34.97 3.35
2527 5703 0.469331 ACGTCAAGGGAGGACACTGA 60.469 55.000 0.00 0.00 34.97 3.41
2528 5704 0.038159 GACGTCAAGGGAGGACACTG 60.038 60.000 11.55 0.00 34.97 3.66
2529 5705 0.178958 AGACGTCAAGGGAGGACACT 60.179 55.000 19.50 0.00 34.97 3.55
2530 5706 0.244178 GAGACGTCAAGGGAGGACAC 59.756 60.000 19.50 0.00 34.97 3.67
2531 5707 0.112606 AGAGACGTCAAGGGAGGACA 59.887 55.000 19.50 0.00 34.97 4.02
2543 5719 7.041644 GCTAGACATTATTACAGAGAGAGACGT 60.042 40.741 0.00 0.00 0.00 4.34
2554 5730 3.802329 GCAGCCGGCTAGACATTATTACA 60.802 47.826 32.30 0.00 40.25 2.41
2572 5748 1.593750 CAGTATCGGAGGCAGCAGC 60.594 63.158 0.00 0.00 41.10 5.25
2574 5750 1.676678 GGTCAGTATCGGAGGCAGCA 61.677 60.000 0.00 0.00 0.00 4.41
2586 5762 1.003646 AGCAGAGGGAGAGGTCAGTA 58.996 55.000 0.00 0.00 0.00 2.74
2587 5763 0.324275 GAGCAGAGGGAGAGGTCAGT 60.324 60.000 0.00 0.00 0.00 3.41
2615 5791 3.209410 AGGATGGATTGACGCTTTGATC 58.791 45.455 0.00 0.00 0.00 2.92
2622 5798 2.315925 TGAGAAGGATGGATTGACGC 57.684 50.000 0.00 0.00 0.00 5.19
2650 5826 2.031516 CAAGACAGTCGCCTGCAGG 61.032 63.158 29.34 29.34 42.81 4.85
2696 5872 4.694233 CAGAGTGCTGCACGGCCT 62.694 66.667 25.39 19.97 39.64 5.19
2704 5880 2.062361 TTTGTTGCCGCAGAGTGCTG 62.062 55.000 0.00 0.00 42.25 4.41
2710 5886 1.771073 CTCGTGTTTGTTGCCGCAGA 61.771 55.000 0.00 0.00 0.00 4.26
2722 5898 3.851976 ATCTTTCGTCTAGCTCGTGTT 57.148 42.857 0.00 0.00 0.00 3.32
2732 5908 4.759782 ACGATGGATTCAATCTTTCGTCT 58.240 39.130 17.15 2.67 40.25 4.18
2740 5916 5.704515 ATTCATCAGGACGATGGATTCAATC 59.295 40.000 2.45 0.00 46.68 2.67
2754 5930 7.552330 TCGTGAATGTAATTGAATTCATCAGGA 59.448 33.333 17.74 17.74 42.90 3.86
2793 5969 0.933097 AACGCGCTAATGCATCTCAG 59.067 50.000 5.73 0.00 39.64 3.35
2794 5970 0.652071 CAACGCGCTAATGCATCTCA 59.348 50.000 5.73 0.00 39.64 3.27
2797 5973 0.316196 GTCCAACGCGCTAATGCATC 60.316 55.000 5.73 0.00 39.64 3.91
2808 5984 0.108138 ATAGTGCTCCTGTCCAACGC 60.108 55.000 0.00 0.00 0.00 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.