Multiple sequence alignment - TraesCS5A01G191900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G191900 chr5A 100.000 3092 0 0 1 3092 395853816 395850725 0.000000e+00 5710.0
1 TraesCS5A01G191900 chr5A 95.977 174 6 1 2400 2572 168438166 168437993 6.530000e-72 281.0
2 TraesCS5A01G191900 chr5A 93.889 180 9 2 2402 2581 117510486 117510663 1.410000e-68 270.0
3 TraesCS5A01G191900 chr5A 93.443 183 10 2 2402 2584 118345414 118345234 1.410000e-68 270.0
4 TraesCS5A01G191900 chr5D 92.937 2067 72 34 387 2407 301994561 301996599 0.000000e+00 2940.0
5 TraesCS5A01G191900 chr5D 87.671 292 30 4 3 292 301994042 301994329 4.940000e-88 335.0
6 TraesCS5A01G191900 chr5D 97.576 165 4 0 2405 2569 66671784 66671948 1.820000e-72 283.0
7 TraesCS5A01G191900 chr5D 92.254 142 5 3 2570 2707 301996598 301996737 2.430000e-46 196.0
8 TraesCS5A01G191900 chr5B 91.626 2030 89 40 422 2405 344943277 344945271 0.000000e+00 2732.0
9 TraesCS5A01G191900 chr5B 91.262 103 3 2 2571 2669 344945275 344945375 5.380000e-28 135.0
10 TraesCS5A01G191900 chr5B 89.333 75 3 2 2692 2761 344945376 344945450 4.250000e-14 89.8
11 TraesCS5A01G191900 chr7B 96.429 168 6 0 2406 2573 186866684 186866517 8.440000e-71 278.0
12 TraesCS5A01G191900 chr4B 96.429 168 6 0 2403 2570 549133883 549133716 8.440000e-71 278.0
13 TraesCS5A01G191900 chr3A 93.956 182 9 1 2388 2569 157045203 157045382 1.090000e-69 274.0
14 TraesCS5A01G191900 chr3A 78.963 328 59 10 1178 1500 719195022 719194700 6.720000e-52 215.0
15 TraesCS5A01G191900 chr1B 94.382 178 9 1 2392 2569 492367936 492368112 3.930000e-69 272.0
16 TraesCS5A01G191900 chr2A 92.935 184 11 2 2399 2580 603083618 603083435 1.830000e-67 267.0
17 TraesCS5A01G191900 chr3B 79.412 340 57 8 1178 1512 787655026 787654695 8.630000e-56 228.0
18 TraesCS5A01G191900 chr3D 79.331 329 56 12 1178 1500 589153985 589154307 1.440000e-53 220.0
19 TraesCS5A01G191900 chr7A 94.737 38 0 2 263 299 526150524 526150560 1.200000e-04 58.4
20 TraesCS5A01G191900 chr4A 100.000 29 0 0 271 299 5813920 5813948 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G191900 chr5A 395850725 395853816 3091 True 5710.0 5710 100.000000 1 3092 1 chr5A.!!$R3 3091
1 TraesCS5A01G191900 chr5D 301994042 301996737 2695 False 1157.0 2940 90.954000 3 2707 3 chr5D.!!$F2 2704
2 TraesCS5A01G191900 chr5B 344943277 344945450 2173 False 985.6 2732 90.740333 422 2761 3 chr5B.!!$F1 2339

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 1107 0.178973 GAGGTAGCCTCCTCCTCCTC 60.179 65.0 12.22 0.0 44.36 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2847 3067 0.036732 TGCTTGCTTCTCCACCGAAT 59.963 50.0 0.0 0.0 0.0 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 96 6.973474 CGAGATTGTCTTAACCGAGTTAGAAT 59.027 38.462 0.00 0.00 29.41 2.40
137 139 9.372541 CACTGTTTGAATTTGTTTATGCATTTC 57.627 29.630 3.54 0.83 0.00 2.17
138 140 9.107177 ACTGTTTGAATTTGTTTATGCATTTCA 57.893 25.926 3.54 3.88 0.00 2.69
157 159 8.431593 GCATTTCAACGATATTTAAACTTTGCA 58.568 29.630 0.00 0.00 0.00 4.08
160 162 9.522804 TTTCAACGATATTTAAACTTTGCAACT 57.477 25.926 0.00 0.00 0.00 3.16
162 164 8.564574 TCAACGATATTTAAACTTTGCAACTCT 58.435 29.630 0.00 0.00 0.00 3.24
163 165 9.820229 CAACGATATTTAAACTTTGCAACTCTA 57.180 29.630 0.00 0.00 0.00 2.43
166 168 9.358123 CGATATTTAAACTTTGCAACTCTATCG 57.642 33.333 0.00 5.91 0.00 2.92
226 228 6.921914 ACAGACTCGCTATATAACAATACCC 58.078 40.000 0.00 0.00 0.00 3.69
228 230 5.709164 AGACTCGCTATATAACAATACCCGT 59.291 40.000 0.00 0.00 0.00 5.28
246 248 3.313690 CCGTTACAAAAATGTGGGCTTC 58.686 45.455 0.00 0.00 0.00 3.86
249 251 4.806247 CGTTACAAAAATGTGGGCTTCAAA 59.194 37.500 0.00 0.00 0.00 2.69
257 259 6.859420 AAATGTGGGCTTCAAAAATAACAC 57.141 33.333 0.00 0.00 0.00 3.32
298 335 3.185455 AGCTCAGATGGTTAGGTTCCTT 58.815 45.455 0.00 0.00 0.00 3.36
299 336 4.362677 AGCTCAGATGGTTAGGTTCCTTA 58.637 43.478 0.00 0.00 0.00 2.69
300 337 4.971924 AGCTCAGATGGTTAGGTTCCTTAT 59.028 41.667 0.00 0.00 0.00 1.73
301 338 5.059833 GCTCAGATGGTTAGGTTCCTTATG 58.940 45.833 0.00 0.00 0.00 1.90
305 342 5.590259 CAGATGGTTAGGTTCCTTATGTTGG 59.410 44.000 0.00 0.00 0.00 3.77
306 343 3.692690 TGGTTAGGTTCCTTATGTTGGC 58.307 45.455 0.00 0.00 0.00 4.52
310 347 5.889289 GGTTAGGTTCCTTATGTTGGCATTA 59.111 40.000 0.00 0.00 36.58 1.90
356 393 8.547967 TTATTTCAGACTTTCTAGCGATGTTT 57.452 30.769 0.00 0.00 0.00 2.83
361 398 5.406780 CAGACTTTCTAGCGATGTTTGTTCT 59.593 40.000 0.00 0.00 0.00 3.01
362 399 6.586463 CAGACTTTCTAGCGATGTTTGTTCTA 59.414 38.462 0.00 0.00 0.00 2.10
365 402 3.766151 TCTAGCGATGTTTGTTCTACGG 58.234 45.455 0.00 0.00 0.00 4.02
369 406 2.268298 CGATGTTTGTTCTACGGGAGG 58.732 52.381 0.00 0.00 0.00 4.30
370 407 2.094390 CGATGTTTGTTCTACGGGAGGA 60.094 50.000 0.00 0.00 0.00 3.71
377 414 3.165606 TCTACGGGAGGAGACGTTC 57.834 57.895 0.00 0.00 44.03 3.95
378 415 0.617413 TCTACGGGAGGAGACGTTCT 59.383 55.000 0.00 0.00 44.03 3.01
380 417 0.679002 TACGGGAGGAGACGTTCTGG 60.679 60.000 0.00 0.00 43.79 3.86
381 418 1.977544 CGGGAGGAGACGTTCTGGT 60.978 63.158 0.00 0.00 0.00 4.00
382 419 1.891616 GGGAGGAGACGTTCTGGTC 59.108 63.158 0.00 0.00 37.19 4.02
383 420 0.898789 GGGAGGAGACGTTCTGGTCA 60.899 60.000 0.00 0.00 39.42 4.02
385 422 1.336980 GGAGGAGACGTTCTGGTCAAC 60.337 57.143 0.00 0.00 39.42 3.18
393 533 6.282199 AGACGTTCTGGTCAACTATGTAAT 57.718 37.500 0.00 0.00 39.42 1.89
419 560 9.625747 TCATCTATGATTGTACCATGCTAAAAA 57.374 29.630 0.00 0.00 0.00 1.94
479 621 5.438761 AAAAGGAAAACCGAGAGTTGATG 57.561 39.130 0.00 0.00 39.19 3.07
563 709 4.098654 ACCGTGTGGATCAATTCAAAAACA 59.901 37.500 0.00 0.00 39.21 2.83
574 720 6.467677 TCAATTCAAAAACAGAACAAACCCA 58.532 32.000 0.00 0.00 0.00 4.51
579 725 1.099689 AACAGAACAAACCCACGGTG 58.900 50.000 0.00 0.00 35.34 4.94
580 726 1.358759 CAGAACAAACCCACGGTGC 59.641 57.895 1.68 0.00 35.34 5.01
609 755 4.461081 TGTTGTAACAACTCAACAAAGCCT 59.539 37.500 3.51 0.00 46.72 4.58
628 774 2.544277 CCTCGAACGGCATTACGGATTA 60.544 50.000 0.00 0.00 38.39 1.75
630 776 3.719924 TCGAACGGCATTACGGATTAAT 58.280 40.909 0.00 0.00 38.39 1.40
631 777 4.121317 TCGAACGGCATTACGGATTAATT 58.879 39.130 0.00 0.00 38.39 1.40
632 778 4.209703 TCGAACGGCATTACGGATTAATTC 59.790 41.667 0.00 0.00 38.39 2.17
633 779 4.025563 CGAACGGCATTACGGATTAATTCA 60.026 41.667 0.00 0.00 38.39 2.57
634 780 5.502706 CGAACGGCATTACGGATTAATTCAA 60.503 40.000 0.00 0.00 38.39 2.69
635 781 5.418310 ACGGCATTACGGATTAATTCAAG 57.582 39.130 0.00 0.00 38.39 3.02
636 782 4.879545 ACGGCATTACGGATTAATTCAAGT 59.120 37.500 0.00 0.00 38.39 3.16
637 783 6.050432 ACGGCATTACGGATTAATTCAAGTA 58.950 36.000 0.00 0.00 38.39 2.24
638 784 6.018507 ACGGCATTACGGATTAATTCAAGTAC 60.019 38.462 0.00 0.00 38.39 2.73
641 790 8.709646 GGCATTACGGATTAATTCAAGTACTAG 58.290 37.037 0.00 0.00 0.00 2.57
669 818 1.212751 GAAATGGCCCGTTGACTGC 59.787 57.895 0.00 0.00 0.00 4.40
675 824 1.375908 GCCCGTTGACTGCAGATGA 60.376 57.895 23.35 1.78 0.00 2.92
681 830 3.873361 CCGTTGACTGCAGATGATGTTAT 59.127 43.478 23.35 0.00 0.00 1.89
685 834 4.635223 TGACTGCAGATGATGTTATAGCC 58.365 43.478 23.35 0.00 0.00 3.93
686 835 4.346127 TGACTGCAGATGATGTTATAGCCT 59.654 41.667 23.35 0.00 0.00 4.58
687 836 4.639334 ACTGCAGATGATGTTATAGCCTG 58.361 43.478 23.35 0.00 0.00 4.85
688 837 3.405831 TGCAGATGATGTTATAGCCTGC 58.594 45.455 0.00 0.00 43.94 4.85
689 838 3.405831 GCAGATGATGTTATAGCCTGCA 58.594 45.455 0.00 0.00 43.37 4.41
690 839 3.188048 GCAGATGATGTTATAGCCTGCAC 59.812 47.826 0.00 0.00 43.37 4.57
696 845 2.171079 TTATAGCCTGCACGCACGC 61.171 57.895 10.37 5.04 0.00 5.34
720 869 4.072088 GAGTTTGTCGGGCACGCG 62.072 66.667 1.67 3.53 40.69 6.01
770 921 3.262686 GCCGCACGTAGCTTAGCC 61.263 66.667 0.00 0.00 42.61 3.93
771 922 2.494918 CCGCACGTAGCTTAGCCT 59.505 61.111 0.00 0.00 42.61 4.58
772 923 1.731700 CCGCACGTAGCTTAGCCTA 59.268 57.895 0.00 0.00 42.61 3.93
773 924 0.317938 CCGCACGTAGCTTAGCCTAG 60.318 60.000 0.00 0.00 42.61 3.02
774 925 0.935366 CGCACGTAGCTTAGCCTAGC 60.935 60.000 0.00 0.00 42.61 3.42
777 928 0.745468 ACGTAGCTTAGCCTAGCCAC 59.255 55.000 0.00 0.71 42.20 5.01
838 991 5.817816 TCTTCTGTGTCCAACTTTTCTTCTC 59.182 40.000 0.00 0.00 0.00 2.87
942 1105 4.611119 GAGGTAGCCTCCTCCTCC 57.389 66.667 12.22 0.00 44.36 4.30
943 1106 1.935191 GAGGTAGCCTCCTCCTCCT 59.065 63.158 12.22 0.00 44.36 3.69
944 1107 0.178973 GAGGTAGCCTCCTCCTCCTC 60.179 65.000 12.22 0.00 44.36 3.71
945 1108 1.152419 GGTAGCCTCCTCCTCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
1684 1878 1.227527 CATTATCTGGTCGGCGCCA 60.228 57.895 28.98 19.17 36.97 5.69
1716 1916 4.711949 CCGCAGAAGCACCAGCCT 62.712 66.667 0.00 0.00 43.56 4.58
1770 1970 2.047844 GACGAGAGCAGCAGCCAA 60.048 61.111 0.00 0.00 43.56 4.52
1840 2040 3.833645 CCGAATCTCCGGTGGCGA 61.834 66.667 0.00 0.00 44.23 5.54
1908 2111 2.608268 CCAGAGATAGCAGCATCATCG 58.392 52.381 0.00 0.00 0.00 3.84
1913 2116 1.725706 GATAGCAGCATCATCGTCAGC 59.274 52.381 0.00 0.00 0.00 4.26
1982 2185 2.045536 CCACCTGGAGCAGAAGGC 60.046 66.667 0.00 0.00 45.30 4.35
2055 2258 2.505118 GCAGCAGAGTCGTCGTCC 60.505 66.667 0.00 0.00 0.00 4.79
2157 2364 1.872234 CGCGTGGTGGACATAGACG 60.872 63.158 0.00 0.00 0.00 4.18
2163 2370 1.066430 TGGTGGACATAGACGCCTTTC 60.066 52.381 0.00 0.00 38.09 2.62
2246 2455 7.810658 TCTCTGTTGCATTTCTCAATTTAGTC 58.189 34.615 0.00 0.00 0.00 2.59
2251 2460 7.177216 TGTTGCATTTCTCAATTTAGTCTCCAT 59.823 33.333 0.00 0.00 0.00 3.41
2346 2555 1.785041 CGCCATTGGTTATGCGAGGG 61.785 60.000 4.26 0.00 36.52 4.30
2410 2619 9.800433 GTACTCCATTTTTCTAGTTAGTACTCC 57.200 37.037 0.00 0.00 36.65 3.85
2411 2620 7.849160 ACTCCATTTTTCTAGTTAGTACTCCC 58.151 38.462 0.00 0.00 35.78 4.30
2412 2621 7.679025 ACTCCATTTTTCTAGTTAGTACTCCCT 59.321 37.037 0.00 0.00 35.78 4.20
2413 2622 8.075761 TCCATTTTTCTAGTTAGTACTCCCTC 57.924 38.462 0.00 0.00 35.78 4.30
2414 2623 7.125356 TCCATTTTTCTAGTTAGTACTCCCTCC 59.875 40.741 0.00 0.00 35.78 4.30
2415 2624 6.521151 TTTTTCTAGTTAGTACTCCCTCCG 57.479 41.667 0.00 0.00 35.78 4.63
2416 2625 4.851639 TTCTAGTTAGTACTCCCTCCGT 57.148 45.455 0.00 0.00 35.78 4.69
2417 2626 4.851639 TCTAGTTAGTACTCCCTCCGTT 57.148 45.455 0.00 0.00 35.78 4.44
2418 2627 4.775236 TCTAGTTAGTACTCCCTCCGTTC 58.225 47.826 0.00 0.00 35.78 3.95
2419 2628 2.732763 AGTTAGTACTCCCTCCGTTCC 58.267 52.381 0.00 0.00 0.00 3.62
2420 2629 2.311243 AGTTAGTACTCCCTCCGTTCCT 59.689 50.000 0.00 0.00 0.00 3.36
2421 2630 3.525199 AGTTAGTACTCCCTCCGTTCCTA 59.475 47.826 0.00 0.00 0.00 2.94
2422 2631 4.018050 AGTTAGTACTCCCTCCGTTCCTAA 60.018 45.833 0.00 0.00 0.00 2.69
2423 2632 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2424 2633 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2425 2634 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2426 2635 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2427 2636 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
2428 2637 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2429 2638 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2430 2639 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2431 2640 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2432 2641 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2433 2642 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2434 2643 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2435 2644 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2436 2645 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2437 2646 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2438 2647 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2439 2648 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2463 2672 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
2464 2673 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
2465 2674 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
2466 2675 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
2467 2676 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
2469 2678 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
2470 2679 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
2508 2717 9.944376 TTAGAGTGTAGATTCACTTATTTTGCT 57.056 29.630 0.98 0.00 46.81 3.91
2509 2718 8.854614 AGAGTGTAGATTCACTTATTTTGCTT 57.145 30.769 0.98 0.00 46.81 3.91
2510 2719 9.289782 AGAGTGTAGATTCACTTATTTTGCTTT 57.710 29.630 0.98 0.00 46.81 3.51
2511 2720 9.334693 GAGTGTAGATTCACTTATTTTGCTTTG 57.665 33.333 0.98 0.00 46.81 2.77
2512 2721 8.850156 AGTGTAGATTCACTTATTTTGCTTTGT 58.150 29.630 0.00 0.00 44.92 2.83
2521 2730 9.278978 TCACTTATTTTGCTTTGTATGTAGTCA 57.721 29.630 0.00 0.00 0.00 3.41
2522 2731 9.329913 CACTTATTTTGCTTTGTATGTAGTCAC 57.670 33.333 0.00 0.00 0.00 3.67
2523 2732 9.284968 ACTTATTTTGCTTTGTATGTAGTCACT 57.715 29.630 0.00 0.00 0.00 3.41
2528 2737 9.891828 TTTTGCTTTGTATGTAGTCACTTATTG 57.108 29.630 0.00 0.00 0.00 1.90
2529 2738 8.840833 TTGCTTTGTATGTAGTCACTTATTGA 57.159 30.769 0.00 0.00 0.00 2.57
2530 2739 8.840833 TGCTTTGTATGTAGTCACTTATTGAA 57.159 30.769 0.00 0.00 35.39 2.69
2531 2740 9.278978 TGCTTTGTATGTAGTCACTTATTGAAA 57.721 29.630 0.00 0.00 35.39 2.69
2560 2769 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2561 2770 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2562 2771 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2563 2772 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2564 2773 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2565 2774 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2566 2775 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2567 2776 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2568 2777 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2609 2820 9.826574 ATAGCTCGTTGGACTACAAAAATATAA 57.173 29.630 0.00 0.00 41.58 0.98
2655 2870 9.821240 AGATGGGGTAATATTTTGCAACATATA 57.179 29.630 16.45 7.77 0.00 0.86
2722 2937 1.869132 TTCGTAGATGAGCATGCATGC 59.131 47.619 38.60 38.60 46.35 4.06
2748 2968 9.140286 CTCTATCTAAATGACACACTTTCGAAA 57.860 33.333 10.71 10.71 0.00 3.46
2754 2974 5.560966 ATGACACACTTTCGAAAACTTGT 57.439 34.783 12.41 13.65 0.00 3.16
2761 2981 8.548721 ACACACTTTCGAAAACTTGTAATCTAG 58.451 33.333 12.41 5.44 0.00 2.43
2762 2982 8.548721 CACACTTTCGAAAACTTGTAATCTAGT 58.451 33.333 12.41 0.00 0.00 2.57
2763 2983 9.754382 ACACTTTCGAAAACTTGTAATCTAGTA 57.246 29.630 12.41 0.00 0.00 1.82
2765 2985 9.978044 ACTTTCGAAAACTTGTAATCTAGTAGT 57.022 29.630 12.41 0.00 0.00 2.73
2768 2988 9.970395 TTCGAAAACTTGTAATCTAGTAGTTCA 57.030 29.630 0.00 0.00 31.21 3.18
2769 2989 9.970395 TCGAAAACTTGTAATCTAGTAGTTCAA 57.030 29.630 0.00 0.00 31.21 2.69
2795 3015 1.974265 TTTTCATGCCGACCTTGACA 58.026 45.000 0.00 0.00 0.00 3.58
2796 3016 2.198827 TTTCATGCCGACCTTGACAT 57.801 45.000 0.00 0.00 0.00 3.06
2797 3017 3.342377 TTTCATGCCGACCTTGACATA 57.658 42.857 0.00 0.00 0.00 2.29
2798 3018 2.602257 TCATGCCGACCTTGACATAG 57.398 50.000 0.00 0.00 0.00 2.23
2799 3019 1.831106 TCATGCCGACCTTGACATAGT 59.169 47.619 0.00 0.00 0.00 2.12
2800 3020 3.028130 TCATGCCGACCTTGACATAGTA 58.972 45.455 0.00 0.00 0.00 1.82
2801 3021 3.068165 TCATGCCGACCTTGACATAGTAG 59.932 47.826 0.00 0.00 0.00 2.57
2802 3022 2.453521 TGCCGACCTTGACATAGTAGT 58.546 47.619 0.00 0.00 0.00 2.73
2803 3023 2.829720 TGCCGACCTTGACATAGTAGTT 59.170 45.455 0.00 0.00 0.00 2.24
2804 3024 3.259876 TGCCGACCTTGACATAGTAGTTT 59.740 43.478 0.00 0.00 0.00 2.66
2805 3025 4.251268 GCCGACCTTGACATAGTAGTTTT 58.749 43.478 0.00 0.00 0.00 2.43
2806 3026 4.092968 GCCGACCTTGACATAGTAGTTTTG 59.907 45.833 0.00 0.00 0.00 2.44
2807 3027 4.092968 CCGACCTTGACATAGTAGTTTTGC 59.907 45.833 0.00 0.00 0.00 3.68
2808 3028 4.929808 CGACCTTGACATAGTAGTTTTGCT 59.070 41.667 0.00 0.00 0.00 3.91
2809 3029 5.163953 CGACCTTGACATAGTAGTTTTGCTG 60.164 44.000 0.00 0.00 0.00 4.41
2810 3030 5.003804 ACCTTGACATAGTAGTTTTGCTGG 58.996 41.667 0.00 0.00 0.00 4.85
2811 3031 5.221843 ACCTTGACATAGTAGTTTTGCTGGA 60.222 40.000 0.00 0.00 0.00 3.86
2812 3032 5.705441 CCTTGACATAGTAGTTTTGCTGGAA 59.295 40.000 0.00 0.00 0.00 3.53
2813 3033 6.348540 CCTTGACATAGTAGTTTTGCTGGAAC 60.349 42.308 0.00 0.00 0.00 3.62
2814 3034 5.865085 TGACATAGTAGTTTTGCTGGAACT 58.135 37.500 5.51 5.51 40.28 3.01
2815 3035 6.999950 TGACATAGTAGTTTTGCTGGAACTA 58.000 36.000 3.94 3.94 38.28 2.24
2816 3036 7.446769 TGACATAGTAGTTTTGCTGGAACTAA 58.553 34.615 8.15 0.00 40.25 2.24
2817 3037 7.602644 TGACATAGTAGTTTTGCTGGAACTAAG 59.397 37.037 8.15 0.00 40.25 2.18
2818 3038 7.450903 ACATAGTAGTTTTGCTGGAACTAAGT 58.549 34.615 8.15 0.00 40.25 2.24
2819 3039 7.937394 ACATAGTAGTTTTGCTGGAACTAAGTT 59.063 33.333 8.15 0.00 40.25 2.66
2820 3040 6.619801 AGTAGTTTTGCTGGAACTAAGTTG 57.380 37.500 8.15 0.00 40.25 3.16
2821 3041 4.307443 AGTTTTGCTGGAACTAAGTTGC 57.693 40.909 0.00 0.00 35.68 4.17
2822 3042 3.954258 AGTTTTGCTGGAACTAAGTTGCT 59.046 39.130 0.00 0.00 35.68 3.91
2823 3043 4.402474 AGTTTTGCTGGAACTAAGTTGCTT 59.598 37.500 0.00 0.00 35.68 3.91
2824 3044 3.988379 TTGCTGGAACTAAGTTGCTTG 57.012 42.857 0.00 0.00 34.98 4.01
2825 3045 3.207265 TGCTGGAACTAAGTTGCTTGA 57.793 42.857 0.00 0.00 34.98 3.02
2826 3046 3.550820 TGCTGGAACTAAGTTGCTTGAA 58.449 40.909 0.00 0.00 34.98 2.69
2827 3047 4.144297 TGCTGGAACTAAGTTGCTTGAAT 58.856 39.130 0.00 0.00 34.98 2.57
2828 3048 4.584325 TGCTGGAACTAAGTTGCTTGAATT 59.416 37.500 0.00 0.00 34.98 2.17
2829 3049 5.068987 TGCTGGAACTAAGTTGCTTGAATTT 59.931 36.000 0.00 0.00 34.98 1.82
2830 3050 5.631096 GCTGGAACTAAGTTGCTTGAATTTC 59.369 40.000 0.00 0.00 34.98 2.17
2831 3051 6.707440 TGGAACTAAGTTGCTTGAATTTCA 57.293 33.333 0.00 0.00 34.98 2.69
2832 3052 7.106439 TGGAACTAAGTTGCTTGAATTTCAA 57.894 32.000 11.19 11.19 34.98 2.69
2833 3053 7.551585 TGGAACTAAGTTGCTTGAATTTCAAA 58.448 30.769 12.62 0.00 35.73 2.69
2834 3054 8.203485 TGGAACTAAGTTGCTTGAATTTCAAAT 58.797 29.630 12.62 0.00 35.73 2.32
2835 3055 9.045223 GGAACTAAGTTGCTTGAATTTCAAATT 57.955 29.630 12.62 0.00 35.73 1.82
2837 3057 8.285776 ACTAAGTTGCTTGAATTTCAAATTCG 57.714 30.769 16.41 6.00 35.73 3.34
2838 3058 6.529463 AAGTTGCTTGAATTTCAAATTCGG 57.471 33.333 16.41 12.81 35.73 4.30
2839 3059 4.990426 AGTTGCTTGAATTTCAAATTCGGG 59.010 37.500 16.41 12.52 35.73 5.14
2840 3060 4.599047 TGCTTGAATTTCAAATTCGGGT 57.401 36.364 16.41 0.00 35.73 5.28
2841 3061 4.555262 TGCTTGAATTTCAAATTCGGGTC 58.445 39.130 16.41 7.53 35.73 4.46
2842 3062 4.038522 TGCTTGAATTTCAAATTCGGGTCA 59.961 37.500 16.41 9.60 35.73 4.02
2843 3063 4.622740 GCTTGAATTTCAAATTCGGGTCAG 59.377 41.667 16.41 9.02 35.73 3.51
2844 3064 5.772521 CTTGAATTTCAAATTCGGGTCAGT 58.227 37.500 16.41 0.00 35.73 3.41
2845 3065 5.371115 TGAATTTCAAATTCGGGTCAGTC 57.629 39.130 16.41 0.00 0.00 3.51
2846 3066 4.824537 TGAATTTCAAATTCGGGTCAGTCA 59.175 37.500 16.41 0.00 0.00 3.41
2847 3067 5.300539 TGAATTTCAAATTCGGGTCAGTCAA 59.699 36.000 16.41 0.00 0.00 3.18
2848 3068 5.982890 ATTTCAAATTCGGGTCAGTCAAT 57.017 34.783 0.00 0.00 0.00 2.57
2849 3069 5.782893 TTTCAAATTCGGGTCAGTCAATT 57.217 34.783 0.00 0.00 0.00 2.32
2850 3070 5.371115 TTCAAATTCGGGTCAGTCAATTC 57.629 39.130 0.00 0.00 0.00 2.17
2851 3071 3.435327 TCAAATTCGGGTCAGTCAATTCG 59.565 43.478 0.00 0.00 0.00 3.34
2852 3072 2.024176 ATTCGGGTCAGTCAATTCGG 57.976 50.000 0.00 0.00 0.00 4.30
2853 3073 0.682852 TTCGGGTCAGTCAATTCGGT 59.317 50.000 0.00 0.00 0.00 4.69
2854 3074 0.037697 TCGGGTCAGTCAATTCGGTG 60.038 55.000 0.00 0.00 0.00 4.94
2855 3075 1.019278 CGGGTCAGTCAATTCGGTGG 61.019 60.000 0.00 0.00 0.00 4.61
2856 3076 0.323629 GGGTCAGTCAATTCGGTGGA 59.676 55.000 0.00 0.00 0.00 4.02
2857 3077 1.676014 GGGTCAGTCAATTCGGTGGAG 60.676 57.143 0.00 0.00 0.00 3.86
2858 3078 1.275291 GGTCAGTCAATTCGGTGGAGA 59.725 52.381 0.00 0.00 0.00 3.71
2859 3079 2.289444 GGTCAGTCAATTCGGTGGAGAA 60.289 50.000 0.00 0.00 34.31 2.87
2860 3080 2.996621 GTCAGTCAATTCGGTGGAGAAG 59.003 50.000 0.00 0.00 33.19 2.85
2861 3081 1.734465 CAGTCAATTCGGTGGAGAAGC 59.266 52.381 0.00 0.00 33.19 3.86
2862 3082 1.347707 AGTCAATTCGGTGGAGAAGCA 59.652 47.619 0.00 0.00 33.19 3.91
2863 3083 2.151202 GTCAATTCGGTGGAGAAGCAA 58.849 47.619 0.00 0.00 33.19 3.91
2864 3084 2.160417 GTCAATTCGGTGGAGAAGCAAG 59.840 50.000 0.00 0.00 33.19 4.01
2865 3085 1.135575 CAATTCGGTGGAGAAGCAAGC 60.136 52.381 0.00 0.00 33.19 4.01
2866 3086 0.036732 ATTCGGTGGAGAAGCAAGCA 59.963 50.000 0.00 0.00 33.19 3.91
2867 3087 0.179032 TTCGGTGGAGAAGCAAGCAA 60.179 50.000 0.00 0.00 0.00 3.91
2868 3088 0.603707 TCGGTGGAGAAGCAAGCAAG 60.604 55.000 0.00 0.00 0.00 4.01
2869 3089 1.583477 GGTGGAGAAGCAAGCAAGC 59.417 57.895 0.00 0.00 0.00 4.01
2870 3090 1.208614 GTGGAGAAGCAAGCAAGCG 59.791 57.895 0.00 0.00 40.15 4.68
2871 3091 1.071299 TGGAGAAGCAAGCAAGCGA 59.929 52.632 0.00 0.00 40.15 4.93
2872 3092 1.230635 TGGAGAAGCAAGCAAGCGAC 61.231 55.000 0.00 0.00 40.15 5.19
2873 3093 1.131420 GAGAAGCAAGCAAGCGACG 59.869 57.895 0.00 0.00 40.15 5.12
2874 3094 1.284982 GAGAAGCAAGCAAGCGACGA 61.285 55.000 0.00 0.00 40.15 4.20
2875 3095 1.131420 GAAGCAAGCAAGCGACGAG 59.869 57.895 0.00 0.00 40.15 4.18
2876 3096 1.284982 GAAGCAAGCAAGCGACGAGA 61.285 55.000 0.00 0.00 40.15 4.04
2877 3097 1.560860 AAGCAAGCAAGCGACGAGAC 61.561 55.000 0.00 0.00 40.15 3.36
2878 3098 2.765785 CAAGCAAGCGACGAGACG 59.234 61.111 0.00 0.00 0.00 4.18
2879 3099 2.430921 AAGCAAGCGACGAGACGG 60.431 61.111 0.00 0.00 0.00 4.79
2880 3100 2.916052 AAGCAAGCGACGAGACGGA 61.916 57.895 0.00 0.00 0.00 4.69
2881 3101 2.804368 AAGCAAGCGACGAGACGGAG 62.804 60.000 0.00 0.00 0.00 4.63
2882 3102 2.876645 CAAGCGACGAGACGGAGC 60.877 66.667 0.00 0.00 34.72 4.70
2883 3103 3.362797 AAGCGACGAGACGGAGCA 61.363 61.111 0.00 0.00 36.29 4.26
2884 3104 2.916052 AAGCGACGAGACGGAGCAA 61.916 57.895 0.00 0.00 36.29 3.91
2885 3105 3.173240 GCGACGAGACGGAGCAAC 61.173 66.667 0.00 0.00 34.67 4.17
2886 3106 2.561885 CGACGAGACGGAGCAACT 59.438 61.111 0.00 0.00 0.00 3.16
2887 3107 1.792301 CGACGAGACGGAGCAACTA 59.208 57.895 0.00 0.00 0.00 2.24
2888 3108 0.247735 CGACGAGACGGAGCAACTAG 60.248 60.000 0.00 0.00 0.00 2.57
2889 3109 0.099082 GACGAGACGGAGCAACTAGG 59.901 60.000 0.00 0.00 0.00 3.02
2890 3110 1.226717 CGAGACGGAGCAACTAGGC 60.227 63.158 0.00 0.00 0.00 3.93
2891 3111 1.226717 GAGACGGAGCAACTAGGCG 60.227 63.158 0.00 0.00 39.27 5.52
2892 3112 2.202756 GACGGAGCAACTAGGCGG 60.203 66.667 0.00 0.00 39.27 6.13
2893 3113 4.452733 ACGGAGCAACTAGGCGGC 62.453 66.667 0.00 0.00 39.27 6.53
2895 3115 3.787001 GGAGCAACTAGGCGGCCT 61.787 66.667 26.95 26.95 39.27 5.19
2896 3116 2.432300 GGAGCAACTAGGCGGCCTA 61.432 63.158 26.26 26.26 39.27 3.93
2897 3117 1.520666 GAGCAACTAGGCGGCCTAA 59.479 57.895 27.54 12.98 35.49 2.69
2898 3118 0.530870 GAGCAACTAGGCGGCCTAAG 60.531 60.000 27.54 22.17 35.49 2.18
2899 3119 1.523938 GCAACTAGGCGGCCTAAGG 60.524 63.158 27.54 19.61 35.49 2.69
2910 3130 3.717294 CCTAAGGCGGTGCTGGGT 61.717 66.667 0.00 0.00 0.00 4.51
2911 3131 2.436646 CTAAGGCGGTGCTGGGTG 60.437 66.667 0.00 0.00 0.00 4.61
2912 3132 4.715523 TAAGGCGGTGCTGGGTGC 62.716 66.667 0.00 0.00 43.25 5.01
2974 3194 3.139029 GGCCAAGGACGAGTTGTAG 57.861 57.895 0.00 0.00 0.00 2.74
2975 3195 1.019805 GGCCAAGGACGAGTTGTAGC 61.020 60.000 0.00 0.00 0.00 3.58
2976 3196 1.019805 GCCAAGGACGAGTTGTAGCC 61.020 60.000 0.00 0.00 0.00 3.93
2977 3197 0.736325 CCAAGGACGAGTTGTAGCCG 60.736 60.000 0.00 0.00 0.00 5.52
2978 3198 0.736325 CAAGGACGAGTTGTAGCCGG 60.736 60.000 0.00 0.00 0.00 6.13
2979 3199 2.502692 AAGGACGAGTTGTAGCCGGC 62.503 60.000 21.89 21.89 0.00 6.13
2980 3200 2.260434 GACGAGTTGTAGCCGGCA 59.740 61.111 31.54 12.31 0.00 5.69
2981 3201 1.805945 GACGAGTTGTAGCCGGCAG 60.806 63.158 31.54 11.08 0.00 4.85
2982 3202 2.261671 CGAGTTGTAGCCGGCAGT 59.738 61.111 31.54 12.06 0.00 4.40
2983 3203 1.246056 ACGAGTTGTAGCCGGCAGTA 61.246 55.000 31.54 10.80 0.00 2.74
2984 3204 0.525668 CGAGTTGTAGCCGGCAGTAG 60.526 60.000 31.54 7.16 0.00 2.57
2985 3205 0.806492 GAGTTGTAGCCGGCAGTAGC 60.806 60.000 31.54 15.53 41.10 3.58
3001 3221 4.617875 GCCAACACAGGCGAGTAT 57.382 55.556 0.00 0.00 46.12 2.12
3002 3222 2.089854 GCCAACACAGGCGAGTATG 58.910 57.895 0.00 0.00 46.12 2.39
3003 3223 0.391130 GCCAACACAGGCGAGTATGA 60.391 55.000 0.00 0.00 46.12 2.15
3004 3224 1.943968 GCCAACACAGGCGAGTATGAA 60.944 52.381 0.00 0.00 46.12 2.57
3005 3225 2.422597 CCAACACAGGCGAGTATGAAA 58.577 47.619 0.00 0.00 0.00 2.69
3006 3226 2.159627 CCAACACAGGCGAGTATGAAAC 59.840 50.000 0.00 0.00 0.00 2.78
3007 3227 3.067106 CAACACAGGCGAGTATGAAACT 58.933 45.455 0.00 0.00 42.80 2.66
3008 3228 3.402628 ACACAGGCGAGTATGAAACTT 57.597 42.857 0.00 0.00 39.07 2.66
3009 3229 3.067106 ACACAGGCGAGTATGAAACTTG 58.933 45.455 0.00 0.00 39.07 3.16
3010 3230 3.244078 ACACAGGCGAGTATGAAACTTGA 60.244 43.478 0.00 0.00 41.61 3.02
3013 3233 2.602878 GGCGAGTATGAAACTTGACGA 58.397 47.619 0.00 0.00 41.61 4.20
3014 3234 3.187700 GGCGAGTATGAAACTTGACGAT 58.812 45.455 0.00 0.00 41.61 3.73
3015 3235 3.617263 GGCGAGTATGAAACTTGACGATT 59.383 43.478 0.00 0.00 41.61 3.34
3016 3236 4.259850 GGCGAGTATGAAACTTGACGATTC 60.260 45.833 0.00 0.00 41.61 2.52
3017 3237 4.326278 GCGAGTATGAAACTTGACGATTCA 59.674 41.667 0.00 0.00 41.61 2.57
3018 3238 5.163992 GCGAGTATGAAACTTGACGATTCAA 60.164 40.000 0.00 0.00 41.61 2.69
3026 3246 2.691409 TTGACGATTCAAGGCTAGGG 57.309 50.000 0.00 0.00 36.79 3.53
3027 3247 0.830648 TGACGATTCAAGGCTAGGGG 59.169 55.000 0.00 0.00 0.00 4.79
3028 3248 0.831307 GACGATTCAAGGCTAGGGGT 59.169 55.000 0.00 0.00 0.00 4.95
3029 3249 0.541863 ACGATTCAAGGCTAGGGGTG 59.458 55.000 0.00 0.00 0.00 4.61
3030 3250 0.815615 CGATTCAAGGCTAGGGGTGC 60.816 60.000 0.00 0.00 0.00 5.01
3031 3251 0.255890 GATTCAAGGCTAGGGGTGCA 59.744 55.000 0.00 0.00 0.00 4.57
3032 3252 0.704076 ATTCAAGGCTAGGGGTGCAA 59.296 50.000 0.00 0.00 0.00 4.08
3033 3253 0.038166 TTCAAGGCTAGGGGTGCAAG 59.962 55.000 0.00 0.00 0.00 4.01
3034 3254 2.048603 CAAGGCTAGGGGTGCAAGC 61.049 63.158 0.00 0.00 35.47 4.01
3035 3255 2.234296 AAGGCTAGGGGTGCAAGCT 61.234 57.895 7.24 0.00 36.48 3.74
3036 3256 0.914417 AAGGCTAGGGGTGCAAGCTA 60.914 55.000 7.24 0.00 36.48 3.32
3037 3257 1.147153 GGCTAGGGGTGCAAGCTAG 59.853 63.158 7.24 0.00 36.48 3.42
3038 3258 1.147153 GCTAGGGGTGCAAGCTAGG 59.853 63.158 0.00 0.00 33.40 3.02
3039 3259 1.147153 CTAGGGGTGCAAGCTAGGC 59.853 63.158 3.45 3.45 0.00 3.93
3040 3260 1.615124 TAGGGGTGCAAGCTAGGCA 60.615 57.895 8.77 8.77 39.32 4.75
3041 3261 1.626356 TAGGGGTGCAAGCTAGGCAG 61.626 60.000 12.78 0.00 42.85 4.85
3042 3262 2.352805 GGGTGCAAGCTAGGCAGT 59.647 61.111 12.78 0.00 42.85 4.40
3043 3263 1.303643 GGGTGCAAGCTAGGCAGTT 60.304 57.895 12.78 0.00 42.85 3.16
3044 3264 0.895559 GGGTGCAAGCTAGGCAGTTT 60.896 55.000 12.78 0.00 42.85 2.66
3045 3265 0.242017 GGTGCAAGCTAGGCAGTTTG 59.758 55.000 12.78 8.41 43.66 2.93
3046 3266 0.242017 GTGCAAGCTAGGCAGTTTGG 59.758 55.000 12.78 0.37 41.76 3.28
3047 3267 0.110295 TGCAAGCTAGGCAGTTTGGA 59.890 50.000 8.77 8.73 41.76 3.53
3048 3268 0.807496 GCAAGCTAGGCAGTTTGGAG 59.193 55.000 5.48 0.00 41.76 3.86
3049 3269 1.457346 CAAGCTAGGCAGTTTGGAGG 58.543 55.000 0.00 0.00 38.82 4.30
3050 3270 0.329596 AAGCTAGGCAGTTTGGAGGG 59.670 55.000 0.00 0.00 0.00 4.30
3051 3271 0.547712 AGCTAGGCAGTTTGGAGGGA 60.548 55.000 0.00 0.00 0.00 4.20
3052 3272 0.548510 GCTAGGCAGTTTGGAGGGAT 59.451 55.000 0.00 0.00 0.00 3.85
3053 3273 1.748591 GCTAGGCAGTTTGGAGGGATG 60.749 57.143 0.00 0.00 0.00 3.51
3054 3274 0.918983 TAGGCAGTTTGGAGGGATGG 59.081 55.000 0.00 0.00 0.00 3.51
3055 3275 0.846427 AGGCAGTTTGGAGGGATGGA 60.846 55.000 0.00 0.00 0.00 3.41
3056 3276 0.394899 GGCAGTTTGGAGGGATGGAG 60.395 60.000 0.00 0.00 0.00 3.86
3057 3277 0.394899 GCAGTTTGGAGGGATGGAGG 60.395 60.000 0.00 0.00 0.00 4.30
3058 3278 0.995024 CAGTTTGGAGGGATGGAGGT 59.005 55.000 0.00 0.00 0.00 3.85
3059 3279 0.995024 AGTTTGGAGGGATGGAGGTG 59.005 55.000 0.00 0.00 0.00 4.00
3060 3280 0.034089 GTTTGGAGGGATGGAGGTGG 60.034 60.000 0.00 0.00 0.00 4.61
3061 3281 1.214305 TTTGGAGGGATGGAGGTGGG 61.214 60.000 0.00 0.00 0.00 4.61
3062 3282 2.042930 GGAGGGATGGAGGTGGGT 59.957 66.667 0.00 0.00 0.00 4.51
3063 3283 2.378634 GGAGGGATGGAGGTGGGTG 61.379 68.421 0.00 0.00 0.00 4.61
3064 3284 1.306997 GAGGGATGGAGGTGGGTGA 60.307 63.158 0.00 0.00 0.00 4.02
3065 3285 1.616628 AGGGATGGAGGTGGGTGAC 60.617 63.158 0.00 0.00 0.00 3.67
3066 3286 2.584608 GGATGGAGGTGGGTGACG 59.415 66.667 0.00 0.00 0.00 4.35
3067 3287 2.125106 GATGGAGGTGGGTGACGC 60.125 66.667 0.00 0.00 0.00 5.19
3074 3294 2.426023 GTGGGTGACGCCAAGACT 59.574 61.111 7.48 0.00 39.65 3.24
3075 3295 1.961277 GTGGGTGACGCCAAGACTG 60.961 63.158 7.48 0.00 39.65 3.51
3076 3296 2.426023 GGGTGACGCCAAGACTGT 59.574 61.111 7.48 0.00 39.65 3.55
3077 3297 1.668151 GGGTGACGCCAAGACTGTC 60.668 63.158 7.48 0.00 39.65 3.51
3078 3298 1.069090 GGTGACGCCAAGACTGTCA 59.931 57.895 10.88 0.00 40.12 3.58
3079 3299 0.320771 GGTGACGCCAAGACTGTCAT 60.321 55.000 10.88 0.00 43.75 3.06
3080 3300 0.792640 GTGACGCCAAGACTGTCATG 59.207 55.000 10.88 8.34 43.75 3.07
3081 3301 0.320683 TGACGCCAAGACTGTCATGG 60.321 55.000 23.88 23.88 38.22 3.66
3082 3302 0.037326 GACGCCAAGACTGTCATGGA 60.037 55.000 30.24 0.00 37.42 3.41
3083 3303 0.320771 ACGCCAAGACTGTCATGGAC 60.321 55.000 30.24 20.81 37.42 4.02
3084 3304 0.320683 CGCCAAGACTGTCATGGACA 60.321 55.000 30.24 0.00 37.42 4.02
3085 3305 1.877680 CGCCAAGACTGTCATGGACAA 60.878 52.381 30.24 0.00 42.26 3.18
3086 3306 1.537202 GCCAAGACTGTCATGGACAAC 59.463 52.381 30.24 12.60 42.26 3.32
3087 3307 1.800586 CCAAGACTGTCATGGACAACG 59.199 52.381 23.88 0.00 42.26 4.10
3088 3308 1.800586 CAAGACTGTCATGGACAACGG 59.199 52.381 10.88 0.00 42.26 4.44
3089 3309 1.048601 AGACTGTCATGGACAACGGT 58.951 50.000 10.88 0.00 42.26 4.83
3090 3310 1.148310 GACTGTCATGGACAACGGTG 58.852 55.000 0.00 0.00 42.26 4.94
3091 3311 0.756294 ACTGTCATGGACAACGGTGA 59.244 50.000 7.88 0.00 42.26 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 96 7.826744 TCAAACAGTGGCATTTGATACATAGTA 59.173 33.333 9.96 0.00 39.34 1.82
103 105 5.426504 ACAAATTCAAACAGTGGCATTTGA 58.573 33.333 9.96 9.96 41.80 2.69
108 110 5.236047 GCATAAACAAATTCAAACAGTGGCA 59.764 36.000 0.00 0.00 0.00 4.92
109 111 5.236047 TGCATAAACAAATTCAAACAGTGGC 59.764 36.000 0.00 0.00 0.00 5.01
110 112 6.841443 TGCATAAACAAATTCAAACAGTGG 57.159 33.333 0.00 0.00 0.00 4.00
111 113 9.372541 GAAATGCATAAACAAATTCAAACAGTG 57.627 29.630 0.00 0.00 0.00 3.66
114 116 9.713740 GTTGAAATGCATAAACAAATTCAAACA 57.286 25.926 17.56 0.00 39.27 2.83
137 139 8.728088 AGAGTTGCAAAGTTTAAATATCGTTG 57.272 30.769 0.00 0.00 0.00 4.10
187 189 8.542497 AGCGAGTCTGTTTAAAATTATGTACA 57.458 30.769 0.00 0.00 0.00 2.90
204 206 5.709164 ACGGGTATTGTTATATAGCGAGTCT 59.291 40.000 0.00 0.00 30.98 3.24
205 207 5.947443 ACGGGTATTGTTATATAGCGAGTC 58.053 41.667 0.00 0.00 30.98 3.36
209 211 7.872163 TTGTAACGGGTATTGTTATATAGCG 57.128 36.000 0.00 0.00 34.59 4.26
226 228 3.971150 TGAAGCCCACATTTTTGTAACG 58.029 40.909 0.00 0.00 0.00 3.18
228 230 7.872113 ATTTTTGAAGCCCACATTTTTGTAA 57.128 28.000 0.00 0.00 0.00 2.41
236 238 5.543507 TGTGTTATTTTTGAAGCCCACAT 57.456 34.783 0.00 0.00 0.00 3.21
246 248 6.804534 TCTCGCAACTTTGTGTTATTTTTG 57.195 33.333 2.60 0.00 39.58 2.44
249 251 6.312399 TCATCTCGCAACTTTGTGTTATTT 57.688 33.333 2.60 0.00 39.58 1.40
257 259 3.545624 GCTATGCTCATCTCGCAACTTTG 60.546 47.826 0.00 0.00 41.26 2.77
283 286 4.338400 GCCAACATAAGGAACCTAACCATC 59.662 45.833 0.00 0.00 0.00 3.51
306 343 9.603921 AAACCCAGAAAAATATGAGCATTAATG 57.396 29.630 11.27 11.27 0.00 1.90
322 359 9.284968 CTAGAAAGTCTGAAATAAACCCAGAAA 57.715 33.333 0.00 0.00 38.49 2.52
324 361 6.879458 GCTAGAAAGTCTGAAATAAACCCAGA 59.121 38.462 0.00 0.00 34.87 3.86
329 366 7.965045 ACATCGCTAGAAAGTCTGAAATAAAC 58.035 34.615 0.00 0.00 0.00 2.01
356 393 0.037303 ACGTCTCCTCCCGTAGAACA 59.963 55.000 0.00 0.00 35.16 3.18
361 398 0.679002 CCAGAACGTCTCCTCCCGTA 60.679 60.000 0.00 0.00 36.04 4.02
362 399 1.977544 CCAGAACGTCTCCTCCCGT 60.978 63.158 0.00 0.00 39.32 5.28
365 402 0.966920 TTGACCAGAACGTCTCCTCC 59.033 55.000 0.00 0.00 33.70 4.30
369 406 4.175787 ACATAGTTGACCAGAACGTCTC 57.824 45.455 0.00 0.00 33.70 3.36
370 407 5.717078 TTACATAGTTGACCAGAACGTCT 57.283 39.130 0.00 0.00 33.70 4.18
373 410 6.980978 AGATGATTACATAGTTGACCAGAACG 59.019 38.462 0.00 0.00 36.82 3.95
374 411 9.988815 ATAGATGATTACATAGTTGACCAGAAC 57.011 33.333 0.00 0.00 36.82 3.01
375 412 9.987272 CATAGATGATTACATAGTTGACCAGAA 57.013 33.333 0.00 0.00 36.82 3.02
376 413 9.367160 TCATAGATGATTACATAGTTGACCAGA 57.633 33.333 0.00 0.00 36.82 3.86
563 709 0.681564 TTGCACCGTGGGTTTGTTCT 60.682 50.000 0.00 0.00 31.02 3.01
574 720 4.111375 TGTTACAACAAATTTGCACCGT 57.889 36.364 18.12 11.79 35.67 4.83
609 755 2.867287 TAATCCGTAATGCCGTTCGA 57.133 45.000 0.00 0.00 0.00 3.71
628 774 7.406031 TCGATCCAGAACTAGTACTTGAATT 57.594 36.000 11.43 0.00 0.00 2.17
630 776 6.829229 TTCGATCCAGAACTAGTACTTGAA 57.171 37.500 11.43 0.00 0.00 2.69
631 777 6.829229 TTTCGATCCAGAACTAGTACTTGA 57.171 37.500 11.43 0.00 0.00 3.02
632 778 6.477033 CCATTTCGATCCAGAACTAGTACTTG 59.523 42.308 0.00 0.59 0.00 3.16
633 779 6.574350 CCATTTCGATCCAGAACTAGTACTT 58.426 40.000 0.00 0.00 0.00 2.24
634 780 5.452077 GCCATTTCGATCCAGAACTAGTACT 60.452 44.000 0.00 0.00 0.00 2.73
635 781 4.745620 GCCATTTCGATCCAGAACTAGTAC 59.254 45.833 0.00 0.00 0.00 2.73
636 782 4.202223 GGCCATTTCGATCCAGAACTAGTA 60.202 45.833 0.00 0.00 0.00 1.82
637 783 3.432326 GGCCATTTCGATCCAGAACTAGT 60.432 47.826 0.00 0.00 0.00 2.57
638 784 3.134458 GGCCATTTCGATCCAGAACTAG 58.866 50.000 0.00 0.00 0.00 2.57
641 790 1.025041 GGGCCATTTCGATCCAGAAC 58.975 55.000 4.39 0.00 0.00 3.01
669 818 3.431233 CGTGCAGGCTATAACATCATCTG 59.569 47.826 0.00 0.00 0.00 2.90
675 824 1.299541 GTGCGTGCAGGCTATAACAT 58.700 50.000 29.43 0.00 0.00 2.71
770 921 3.467776 GGAAGCTTCCTGTGGCTAG 57.532 57.895 33.98 0.00 44.11 3.42
793 944 0.810016 AGAGAAGACTACGTTCCCGC 59.190 55.000 0.00 0.00 37.70 6.13
804 955 3.823873 TGGACACAGAAGAGAGAGAAGAC 59.176 47.826 0.00 0.00 0.00 3.01
808 961 3.838565 AGTTGGACACAGAAGAGAGAGA 58.161 45.455 0.00 0.00 0.00 3.10
809 962 4.599047 AAGTTGGACACAGAAGAGAGAG 57.401 45.455 0.00 0.00 0.00 3.20
810 963 5.129485 AGAAAAGTTGGACACAGAAGAGAGA 59.871 40.000 0.00 0.00 0.00 3.10
811 964 5.363939 AGAAAAGTTGGACACAGAAGAGAG 58.636 41.667 0.00 0.00 0.00 3.20
838 991 2.415512 GACATTTTCCGTCCGAAGAAGG 59.584 50.000 0.00 0.00 42.54 3.46
939 1102 2.018086 AGGGGAGGAGGAGGAGGAG 61.018 68.421 0.00 0.00 0.00 3.69
940 1103 2.015726 GAGGGGAGGAGGAGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
941 1104 2.612251 GAGGGGAGGAGGAGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
942 1105 2.018086 AGGAGGGGAGGAGGAGGAG 61.018 68.421 0.00 0.00 0.00 3.69
943 1106 2.015726 GAGGAGGGGAGGAGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
944 1107 2.018086 AGAGGAGGGGAGGAGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
945 1108 1.541672 GAGAGGAGGGGAGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
1090 1278 2.768344 GGAGGGATTGGCGGAGGA 60.768 66.667 0.00 0.00 0.00 3.71
1122 1310 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1123 1311 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1124 1312 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1125 1313 1.541672 GGAGGAGGAGGAGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
1534 1728 2.187946 CAGCATCCCTGGGTCGTC 59.812 66.667 13.56 0.91 37.93 4.20
1716 1916 4.798907 CCGTCGTAGTAGAAGTAGTCGTAA 59.201 45.833 0.00 0.00 0.00 3.18
1770 1970 2.753043 CCGGCATTGCTCCAAGCT 60.753 61.111 8.82 0.00 42.97 3.74
1800 2000 0.319083 TGACGCCATTTCCGTAGTGT 59.681 50.000 0.00 0.00 39.30 3.55
1803 2003 1.006832 CCTTGACGCCATTTCCGTAG 58.993 55.000 0.00 0.00 39.30 3.51
1908 2111 3.950794 TTCCATGACGGCGGCTGAC 62.951 63.158 16.45 10.34 33.14 3.51
1913 2116 3.487202 CGTGTTCCATGACGGCGG 61.487 66.667 13.24 0.00 33.14 6.13
2163 2370 3.423154 GAAACTGTGCCTCGCCCG 61.423 66.667 0.00 0.00 0.00 6.13
2246 2455 7.766278 AGCTGAATTAACTAACACTACATGGAG 59.234 37.037 2.41 2.41 0.00 3.86
2251 2460 7.837863 AGCTAGCTGAATTAACTAACACTACA 58.162 34.615 18.57 0.00 0.00 2.74
2397 2606 3.882288 GGAACGGAGGGAGTACTAACTAG 59.118 52.174 0.00 0.00 35.56 2.57
2405 2614 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2406 2615 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2407 2616 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2408 2617 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2409 2618 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2410 2619 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2411 2620 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2412 2621 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2413 2622 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2437 2646 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
2438 2647 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
2439 2648 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
2440 2649 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
2441 2650 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
2442 2651 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
2443 2652 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
2444 2653 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
2495 2704 9.278978 TGACTACATACAAAGCAAAATAAGTGA 57.721 29.630 0.00 0.00 0.00 3.41
2496 2705 9.329913 GTGACTACATACAAAGCAAAATAAGTG 57.670 33.333 0.00 0.00 0.00 3.16
2497 2706 9.284968 AGTGACTACATACAAAGCAAAATAAGT 57.715 29.630 0.00 0.00 0.00 2.24
2502 2711 9.891828 CAATAAGTGACTACATACAAAGCAAAA 57.108 29.630 0.00 0.00 0.00 2.44
2503 2712 9.278978 TCAATAAGTGACTACATACAAAGCAAA 57.721 29.630 0.00 0.00 0.00 3.68
2504 2713 8.840833 TCAATAAGTGACTACATACAAAGCAA 57.159 30.769 0.00 0.00 0.00 3.91
2505 2714 8.840833 TTCAATAAGTGACTACATACAAAGCA 57.159 30.769 0.00 0.00 35.39 3.91
2534 2743 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2535 2744 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2536 2745 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2537 2746 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2538 2747 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2539 2748 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2540 2749 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2541 2750 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2542 2751 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2543 2752 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2544 2753 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2545 2754 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2546 2755 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
2547 2756 8.345306 AGATATACTCCCTCCGTTCCTAAATAT 58.655 37.037 0.00 0.00 0.00 1.28
2548 2757 7.706674 AGATATACTCCCTCCGTTCCTAAATA 58.293 38.462 0.00 0.00 0.00 1.40
2549 2758 6.563163 AGATATACTCCCTCCGTTCCTAAAT 58.437 40.000 0.00 0.00 0.00 1.40
2550 2759 5.961897 AGATATACTCCCTCCGTTCCTAAA 58.038 41.667 0.00 0.00 0.00 1.85
2551 2760 5.595814 AGATATACTCCCTCCGTTCCTAA 57.404 43.478 0.00 0.00 0.00 2.69
2552 2761 6.446110 TCATAGATATACTCCCTCCGTTCCTA 59.554 42.308 0.00 0.00 0.00 2.94
2553 2762 5.253330 TCATAGATATACTCCCTCCGTTCCT 59.747 44.000 0.00 0.00 0.00 3.36
2554 2763 5.507637 TCATAGATATACTCCCTCCGTTCC 58.492 45.833 0.00 0.00 0.00 3.62
2555 2764 7.363094 CCTTTCATAGATATACTCCCTCCGTTC 60.363 44.444 0.00 0.00 0.00 3.95
2556 2765 6.437793 CCTTTCATAGATATACTCCCTCCGTT 59.562 42.308 0.00 0.00 0.00 4.44
2557 2766 5.952947 CCTTTCATAGATATACTCCCTCCGT 59.047 44.000 0.00 0.00 0.00 4.69
2558 2767 6.188407 TCCTTTCATAGATATACTCCCTCCG 58.812 44.000 0.00 0.00 0.00 4.63
2559 2768 8.616799 ATTCCTTTCATAGATATACTCCCTCC 57.383 38.462 0.00 0.00 0.00 4.30
2561 2770 9.207868 GCTATTCCTTTCATAGATATACTCCCT 57.792 37.037 0.00 0.00 0.00 4.20
2562 2771 9.207868 AGCTATTCCTTTCATAGATATACTCCC 57.792 37.037 0.00 0.00 0.00 4.30
2564 2773 9.944663 CGAGCTATTCCTTTCATAGATATACTC 57.055 37.037 0.00 0.00 0.00 2.59
2565 2774 9.469097 ACGAGCTATTCCTTTCATAGATATACT 57.531 33.333 0.00 0.00 0.00 2.12
2568 2777 8.037758 CCAACGAGCTATTCCTTTCATAGATAT 58.962 37.037 0.00 0.00 0.00 1.63
2656 2871 8.816144 GCTTTTGTGAAAAAGTTCATCAATACA 58.184 29.630 11.42 0.00 45.38 2.29
2680 2895 2.639839 AGGAGTGAACTTGGTATGTGCT 59.360 45.455 0.00 0.00 0.00 4.40
2688 2903 4.252971 TCTACGAAAGGAGTGAACTTGG 57.747 45.455 0.00 0.00 44.57 3.61
2722 2937 8.689251 TTCGAAAGTGTGTCATTTAGATAGAG 57.311 34.615 0.00 0.00 0.00 2.43
2732 2952 5.560966 ACAAGTTTTCGAAAGTGTGTCAT 57.439 34.783 17.83 0.26 0.00 3.06
2775 2995 2.302260 TGTCAAGGTCGGCATGAAAAA 58.698 42.857 0.00 0.00 0.00 1.94
2776 2996 1.974265 TGTCAAGGTCGGCATGAAAA 58.026 45.000 0.00 0.00 0.00 2.29
2777 2997 2.198827 ATGTCAAGGTCGGCATGAAA 57.801 45.000 0.00 0.00 0.00 2.69
2778 2998 2.236146 ACTATGTCAAGGTCGGCATGAA 59.764 45.455 0.00 0.00 0.00 2.57
2779 2999 1.831106 ACTATGTCAAGGTCGGCATGA 59.169 47.619 0.00 0.00 0.00 3.07
2780 3000 2.315925 ACTATGTCAAGGTCGGCATG 57.684 50.000 0.00 0.00 0.00 4.06
2781 3001 3.031736 ACTACTATGTCAAGGTCGGCAT 58.968 45.455 0.00 0.00 0.00 4.40
2782 3002 2.453521 ACTACTATGTCAAGGTCGGCA 58.546 47.619 0.00 0.00 0.00 5.69
2783 3003 3.521947 AACTACTATGTCAAGGTCGGC 57.478 47.619 0.00 0.00 0.00 5.54
2784 3004 4.092968 GCAAAACTACTATGTCAAGGTCGG 59.907 45.833 0.00 0.00 0.00 4.79
2785 3005 4.929808 AGCAAAACTACTATGTCAAGGTCG 59.070 41.667 0.00 0.00 0.00 4.79
2786 3006 5.122396 CCAGCAAAACTACTATGTCAAGGTC 59.878 44.000 0.00 0.00 0.00 3.85
2787 3007 5.003804 CCAGCAAAACTACTATGTCAAGGT 58.996 41.667 0.00 0.00 0.00 3.50
2788 3008 5.245531 TCCAGCAAAACTACTATGTCAAGG 58.754 41.667 0.00 0.00 0.00 3.61
2789 3009 6.428159 AGTTCCAGCAAAACTACTATGTCAAG 59.572 38.462 0.00 0.00 35.25 3.02
2790 3010 6.296026 AGTTCCAGCAAAACTACTATGTCAA 58.704 36.000 0.00 0.00 35.25 3.18
2791 3011 5.865085 AGTTCCAGCAAAACTACTATGTCA 58.135 37.500 0.00 0.00 35.25 3.58
2792 3012 7.603024 ACTTAGTTCCAGCAAAACTACTATGTC 59.397 37.037 5.42 0.00 38.57 3.06
2793 3013 7.450903 ACTTAGTTCCAGCAAAACTACTATGT 58.549 34.615 5.42 0.00 38.57 2.29
2794 3014 7.907214 ACTTAGTTCCAGCAAAACTACTATG 57.093 36.000 5.42 0.00 38.57 2.23
2795 3015 7.094762 GCAACTTAGTTCCAGCAAAACTACTAT 60.095 37.037 0.00 0.00 38.57 2.12
2796 3016 6.204108 GCAACTTAGTTCCAGCAAAACTACTA 59.796 38.462 0.00 0.00 38.57 1.82
2797 3017 5.008712 GCAACTTAGTTCCAGCAAAACTACT 59.991 40.000 0.00 0.00 38.57 2.57
2798 3018 5.008712 AGCAACTTAGTTCCAGCAAAACTAC 59.991 40.000 8.28 0.00 38.57 2.73
2799 3019 5.130350 AGCAACTTAGTTCCAGCAAAACTA 58.870 37.500 8.28 2.55 38.00 2.24
2800 3020 3.954258 AGCAACTTAGTTCCAGCAAAACT 59.046 39.130 8.28 4.20 40.06 2.66
2801 3021 4.307443 AGCAACTTAGTTCCAGCAAAAC 57.693 40.909 8.28 0.00 0.00 2.43
2802 3022 4.400884 TCAAGCAACTTAGTTCCAGCAAAA 59.599 37.500 8.28 0.00 0.00 2.44
2803 3023 3.951037 TCAAGCAACTTAGTTCCAGCAAA 59.049 39.130 8.28 0.00 0.00 3.68
2804 3024 3.550820 TCAAGCAACTTAGTTCCAGCAA 58.449 40.909 8.28 0.00 0.00 3.91
2805 3025 3.207265 TCAAGCAACTTAGTTCCAGCA 57.793 42.857 8.28 0.00 0.00 4.41
2806 3026 4.773323 ATTCAAGCAACTTAGTTCCAGC 57.227 40.909 0.00 0.00 0.00 4.85
2807 3027 6.738114 TGAAATTCAAGCAACTTAGTTCCAG 58.262 36.000 0.00 0.00 0.00 3.86
2808 3028 6.707440 TGAAATTCAAGCAACTTAGTTCCA 57.293 33.333 0.00 0.00 0.00 3.53
2809 3029 8.593492 ATTTGAAATTCAAGCAACTTAGTTCC 57.407 30.769 8.51 0.00 37.70 3.62
2811 3031 8.755018 CGAATTTGAAATTCAAGCAACTTAGTT 58.245 29.630 25.10 0.00 37.70 2.24
2812 3032 7.382218 CCGAATTTGAAATTCAAGCAACTTAGT 59.618 33.333 25.10 0.00 37.70 2.24
2813 3033 7.148755 CCCGAATTTGAAATTCAAGCAACTTAG 60.149 37.037 25.10 8.89 37.70 2.18
2814 3034 6.644592 CCCGAATTTGAAATTCAAGCAACTTA 59.355 34.615 25.10 0.00 37.70 2.24
2815 3035 5.466393 CCCGAATTTGAAATTCAAGCAACTT 59.534 36.000 25.10 0.13 37.70 2.66
2816 3036 4.990426 CCCGAATTTGAAATTCAAGCAACT 59.010 37.500 25.10 0.00 37.70 3.16
2817 3037 4.749598 ACCCGAATTTGAAATTCAAGCAAC 59.250 37.500 25.10 3.04 37.70 4.17
2818 3038 4.954875 ACCCGAATTTGAAATTCAAGCAA 58.045 34.783 25.10 0.00 37.70 3.91
2819 3039 4.038522 TGACCCGAATTTGAAATTCAAGCA 59.961 37.500 25.10 15.89 37.70 3.91
2820 3040 4.555262 TGACCCGAATTTGAAATTCAAGC 58.445 39.130 25.10 14.01 37.70 4.01
2821 3041 5.772521 ACTGACCCGAATTTGAAATTCAAG 58.227 37.500 25.10 18.62 37.70 3.02
2822 3042 5.300539 TGACTGACCCGAATTTGAAATTCAA 59.699 36.000 25.10 4.03 34.03 2.69
2823 3043 4.824537 TGACTGACCCGAATTTGAAATTCA 59.175 37.500 25.10 9.55 0.00 2.57
2824 3044 5.371115 TGACTGACCCGAATTTGAAATTC 57.629 39.130 18.21 18.21 0.00 2.17
2825 3045 5.782893 TTGACTGACCCGAATTTGAAATT 57.217 34.783 2.27 2.27 0.00 1.82
2826 3046 5.982890 ATTGACTGACCCGAATTTGAAAT 57.017 34.783 0.00 0.00 0.00 2.17
2827 3047 5.561919 CGAATTGACTGACCCGAATTTGAAA 60.562 40.000 0.00 0.00 0.00 2.69
2828 3048 4.083537 CGAATTGACTGACCCGAATTTGAA 60.084 41.667 0.00 0.00 0.00 2.69
2829 3049 3.435327 CGAATTGACTGACCCGAATTTGA 59.565 43.478 0.00 0.00 0.00 2.69
2830 3050 3.426159 CCGAATTGACTGACCCGAATTTG 60.426 47.826 0.00 0.00 0.00 2.32
2831 3051 2.747446 CCGAATTGACTGACCCGAATTT 59.253 45.455 0.00 0.00 0.00 1.82
2832 3052 2.290071 ACCGAATTGACTGACCCGAATT 60.290 45.455 0.00 0.00 0.00 2.17
2833 3053 1.278127 ACCGAATTGACTGACCCGAAT 59.722 47.619 0.00 0.00 0.00 3.34
2834 3054 0.682852 ACCGAATTGACTGACCCGAA 59.317 50.000 0.00 0.00 0.00 4.30
2835 3055 0.037697 CACCGAATTGACTGACCCGA 60.038 55.000 0.00 0.00 0.00 5.14
2836 3056 1.019278 CCACCGAATTGACTGACCCG 61.019 60.000 0.00 0.00 0.00 5.28
2837 3057 0.323629 TCCACCGAATTGACTGACCC 59.676 55.000 0.00 0.00 0.00 4.46
2838 3058 1.275291 TCTCCACCGAATTGACTGACC 59.725 52.381 0.00 0.00 0.00 4.02
2839 3059 2.743636 TCTCCACCGAATTGACTGAC 57.256 50.000 0.00 0.00 0.00 3.51
2840 3060 2.612972 GCTTCTCCACCGAATTGACTGA 60.613 50.000 0.00 0.00 0.00 3.41
2841 3061 1.734465 GCTTCTCCACCGAATTGACTG 59.266 52.381 0.00 0.00 0.00 3.51
2842 3062 1.347707 TGCTTCTCCACCGAATTGACT 59.652 47.619 0.00 0.00 0.00 3.41
2843 3063 1.808411 TGCTTCTCCACCGAATTGAC 58.192 50.000 0.00 0.00 0.00 3.18
2844 3064 2.426522 CTTGCTTCTCCACCGAATTGA 58.573 47.619 0.00 0.00 0.00 2.57
2845 3065 1.135575 GCTTGCTTCTCCACCGAATTG 60.136 52.381 0.00 0.00 0.00 2.32
2846 3066 1.168714 GCTTGCTTCTCCACCGAATT 58.831 50.000 0.00 0.00 0.00 2.17
2847 3067 0.036732 TGCTTGCTTCTCCACCGAAT 59.963 50.000 0.00 0.00 0.00 3.34
2848 3068 0.179032 TTGCTTGCTTCTCCACCGAA 60.179 50.000 0.00 0.00 0.00 4.30
2849 3069 0.603707 CTTGCTTGCTTCTCCACCGA 60.604 55.000 0.00 0.00 0.00 4.69
2850 3070 1.871772 CTTGCTTGCTTCTCCACCG 59.128 57.895 0.00 0.00 0.00 4.94
2851 3071 1.583477 GCTTGCTTGCTTCTCCACC 59.417 57.895 0.00 0.00 0.00 4.61
2852 3072 1.208614 CGCTTGCTTGCTTCTCCAC 59.791 57.895 0.00 0.00 0.00 4.02
2853 3073 1.071299 TCGCTTGCTTGCTTCTCCA 59.929 52.632 0.00 0.00 0.00 3.86
2854 3074 1.499502 GTCGCTTGCTTGCTTCTCC 59.500 57.895 0.00 0.00 0.00 3.71
2855 3075 1.131420 CGTCGCTTGCTTGCTTCTC 59.869 57.895 0.00 0.00 0.00 2.87
2856 3076 1.287730 CTCGTCGCTTGCTTGCTTCT 61.288 55.000 0.00 0.00 0.00 2.85
2857 3077 1.131420 CTCGTCGCTTGCTTGCTTC 59.869 57.895 0.00 0.00 0.00 3.86
2858 3078 1.300931 TCTCGTCGCTTGCTTGCTT 60.301 52.632 0.00 0.00 0.00 3.91
2859 3079 2.024319 GTCTCGTCGCTTGCTTGCT 61.024 57.895 0.00 0.00 0.00 3.91
2860 3080 2.472049 GTCTCGTCGCTTGCTTGC 59.528 61.111 0.00 0.00 0.00 4.01
2861 3081 2.720758 CCGTCTCGTCGCTTGCTTG 61.721 63.158 0.00 0.00 0.00 4.01
2862 3082 2.430921 CCGTCTCGTCGCTTGCTT 60.431 61.111 0.00 0.00 0.00 3.91
2863 3083 3.329688 CTCCGTCTCGTCGCTTGCT 62.330 63.158 0.00 0.00 0.00 3.91
2864 3084 2.876645 CTCCGTCTCGTCGCTTGC 60.877 66.667 0.00 0.00 0.00 4.01
2865 3085 2.876645 GCTCCGTCTCGTCGCTTG 60.877 66.667 0.00 0.00 0.00 4.01
2866 3086 2.916052 TTGCTCCGTCTCGTCGCTT 61.916 57.895 0.00 0.00 0.00 4.68
2867 3087 3.362797 TTGCTCCGTCTCGTCGCT 61.363 61.111 0.00 0.00 0.00 4.93
2868 3088 2.249557 TAGTTGCTCCGTCTCGTCGC 62.250 60.000 0.00 0.00 0.00 5.19
2869 3089 0.247735 CTAGTTGCTCCGTCTCGTCG 60.248 60.000 0.00 0.00 0.00 5.12
2870 3090 0.099082 CCTAGTTGCTCCGTCTCGTC 59.901 60.000 0.00 0.00 0.00 4.20
2871 3091 1.935327 GCCTAGTTGCTCCGTCTCGT 61.935 60.000 0.00 0.00 0.00 4.18
2872 3092 1.226717 GCCTAGTTGCTCCGTCTCG 60.227 63.158 0.00 0.00 0.00 4.04
2873 3093 1.226717 CGCCTAGTTGCTCCGTCTC 60.227 63.158 0.00 0.00 0.00 3.36
2874 3094 2.711922 CCGCCTAGTTGCTCCGTCT 61.712 63.158 0.00 0.00 0.00 4.18
2875 3095 2.202756 CCGCCTAGTTGCTCCGTC 60.203 66.667 0.00 0.00 0.00 4.79
2876 3096 4.452733 GCCGCCTAGTTGCTCCGT 62.453 66.667 0.00 0.00 0.00 4.69
2878 3098 1.968050 TTAGGCCGCCTAGTTGCTCC 61.968 60.000 18.59 0.00 37.42 4.70
2879 3099 0.530870 CTTAGGCCGCCTAGTTGCTC 60.531 60.000 18.59 0.00 37.42 4.26
2880 3100 1.522569 CTTAGGCCGCCTAGTTGCT 59.477 57.895 18.59 0.00 37.42 3.91
2881 3101 1.523938 CCTTAGGCCGCCTAGTTGC 60.524 63.158 18.59 0.00 37.42 4.17
2882 3102 1.523938 GCCTTAGGCCGCCTAGTTG 60.524 63.158 18.59 12.19 44.06 3.16
2883 3103 2.908796 GCCTTAGGCCGCCTAGTT 59.091 61.111 18.59 0.00 44.06 2.24
2893 3113 3.717294 ACCCAGCACCGCCTTAGG 61.717 66.667 0.00 0.00 37.30 2.69
2894 3114 2.436646 CACCCAGCACCGCCTTAG 60.437 66.667 0.00 0.00 0.00 2.18
2895 3115 4.715523 GCACCCAGCACCGCCTTA 62.716 66.667 0.00 0.00 44.79 2.69
2920 3140 4.499116 ATGGGCCTCCCTACCGCT 62.499 66.667 4.53 0.00 45.70 5.52
2921 3141 4.256180 CATGGGCCTCCCTACCGC 62.256 72.222 4.53 0.00 45.70 5.68
2922 3142 3.560251 CCATGGGCCTCCCTACCG 61.560 72.222 2.85 0.00 45.70 4.02
2923 3143 3.178611 CCCATGGGCCTCCCTACC 61.179 72.222 20.41 0.00 45.70 3.18
2951 3171 4.821589 CTCGTCCTTGGCCGAGGC 62.822 72.222 32.12 24.57 45.12 4.70
2954 3174 1.180456 TACAACTCGTCCTTGGCCGA 61.180 55.000 0.00 0.00 0.00 5.54
2955 3175 0.736325 CTACAACTCGTCCTTGGCCG 60.736 60.000 0.00 0.00 0.00 6.13
2956 3176 1.019805 GCTACAACTCGTCCTTGGCC 61.020 60.000 0.00 0.00 0.00 5.36
2957 3177 1.019805 GGCTACAACTCGTCCTTGGC 61.020 60.000 0.00 0.00 0.00 4.52
2958 3178 0.736325 CGGCTACAACTCGTCCTTGG 60.736 60.000 0.00 0.00 0.00 3.61
2959 3179 0.736325 CCGGCTACAACTCGTCCTTG 60.736 60.000 0.00 0.00 0.00 3.61
2960 3180 1.590147 CCGGCTACAACTCGTCCTT 59.410 57.895 0.00 0.00 0.00 3.36
2961 3181 3.003113 GCCGGCTACAACTCGTCCT 62.003 63.158 22.15 0.00 0.00 3.85
2962 3182 2.508663 GCCGGCTACAACTCGTCC 60.509 66.667 22.15 0.00 0.00 4.79
2963 3183 1.805945 CTGCCGGCTACAACTCGTC 60.806 63.158 29.70 0.00 0.00 4.20
2964 3184 1.246056 TACTGCCGGCTACAACTCGT 61.246 55.000 29.70 13.10 0.00 4.18
2965 3185 0.525668 CTACTGCCGGCTACAACTCG 60.526 60.000 29.70 7.89 0.00 4.18
2966 3186 0.806492 GCTACTGCCGGCTACAACTC 60.806 60.000 29.70 6.96 0.00 3.01
2967 3187 1.218316 GCTACTGCCGGCTACAACT 59.782 57.895 29.70 5.67 0.00 3.16
2968 3188 3.795638 GCTACTGCCGGCTACAAC 58.204 61.111 29.70 10.89 0.00 3.32
2985 3205 2.093306 TTCATACTCGCCTGTGTTGG 57.907 50.000 0.00 0.00 0.00 3.77
2986 3206 3.067106 AGTTTCATACTCGCCTGTGTTG 58.933 45.455 0.00 0.00 28.23 3.33
2987 3207 3.402628 AGTTTCATACTCGCCTGTGTT 57.597 42.857 0.00 0.00 28.23 3.32
2988 3208 3.067106 CAAGTTTCATACTCGCCTGTGT 58.933 45.455 0.00 0.00 35.54 3.72
2989 3209 3.123621 GTCAAGTTTCATACTCGCCTGTG 59.876 47.826 0.00 0.00 35.54 3.66
2990 3210 3.326747 GTCAAGTTTCATACTCGCCTGT 58.673 45.455 0.00 0.00 35.54 4.00
2991 3211 2.345641 CGTCAAGTTTCATACTCGCCTG 59.654 50.000 0.00 0.00 35.54 4.85
2992 3212 2.230508 TCGTCAAGTTTCATACTCGCCT 59.769 45.455 0.00 0.00 35.54 5.52
2993 3213 2.602878 TCGTCAAGTTTCATACTCGCC 58.397 47.619 0.00 0.00 35.54 5.54
2994 3214 4.326278 TGAATCGTCAAGTTTCATACTCGC 59.674 41.667 0.00 0.00 35.54 5.03
2995 3215 6.389622 TTGAATCGTCAAGTTTCATACTCG 57.610 37.500 0.00 0.00 38.88 4.18
3007 3227 1.209504 CCCCTAGCCTTGAATCGTCAA 59.790 52.381 0.00 0.00 41.57 3.18
3008 3228 0.830648 CCCCTAGCCTTGAATCGTCA 59.169 55.000 0.00 0.00 0.00 4.35
3009 3229 0.831307 ACCCCTAGCCTTGAATCGTC 59.169 55.000 0.00 0.00 0.00 4.20
3010 3230 0.541863 CACCCCTAGCCTTGAATCGT 59.458 55.000 0.00 0.00 0.00 3.73
3011 3231 0.815615 GCACCCCTAGCCTTGAATCG 60.816 60.000 0.00 0.00 0.00 3.34
3012 3232 0.255890 TGCACCCCTAGCCTTGAATC 59.744 55.000 0.00 0.00 0.00 2.52
3013 3233 0.704076 TTGCACCCCTAGCCTTGAAT 59.296 50.000 0.00 0.00 0.00 2.57
3014 3234 0.038166 CTTGCACCCCTAGCCTTGAA 59.962 55.000 0.00 0.00 0.00 2.69
3015 3235 1.685224 CTTGCACCCCTAGCCTTGA 59.315 57.895 0.00 0.00 0.00 3.02
3016 3236 2.048603 GCTTGCACCCCTAGCCTTG 61.049 63.158 0.00 0.00 36.48 3.61
3017 3237 0.914417 TAGCTTGCACCCCTAGCCTT 60.914 55.000 3.72 0.00 42.28 4.35
3018 3238 1.306997 TAGCTTGCACCCCTAGCCT 60.307 57.895 3.72 0.00 42.28 4.58
3019 3239 1.147153 CTAGCTTGCACCCCTAGCC 59.853 63.158 3.72 0.00 42.28 3.93
3020 3240 1.147153 CCTAGCTTGCACCCCTAGC 59.853 63.158 0.00 0.00 41.74 3.42
3021 3241 1.147153 GCCTAGCTTGCACCCCTAG 59.853 63.158 0.00 7.26 0.00 3.02
3022 3242 1.615124 TGCCTAGCTTGCACCCCTA 60.615 57.895 6.52 0.00 32.85 3.53
3023 3243 2.935481 TGCCTAGCTTGCACCCCT 60.935 61.111 6.52 0.00 32.85 4.79
3024 3244 2.439156 CTGCCTAGCTTGCACCCC 60.439 66.667 6.52 0.00 34.46 4.95
3025 3245 0.895559 AAACTGCCTAGCTTGCACCC 60.896 55.000 6.52 0.00 34.46 4.61
3026 3246 0.242017 CAAACTGCCTAGCTTGCACC 59.758 55.000 6.52 0.00 34.46 5.01
3027 3247 0.242017 CCAAACTGCCTAGCTTGCAC 59.758 55.000 6.52 0.00 34.46 4.57
3028 3248 0.110295 TCCAAACTGCCTAGCTTGCA 59.890 50.000 9.87 9.87 37.17 4.08
3029 3249 0.807496 CTCCAAACTGCCTAGCTTGC 59.193 55.000 0.00 0.00 30.42 4.01
3030 3250 1.457346 CCTCCAAACTGCCTAGCTTG 58.543 55.000 0.00 0.00 31.35 4.01
3031 3251 0.329596 CCCTCCAAACTGCCTAGCTT 59.670 55.000 0.00 0.00 0.00 3.74
3032 3252 0.547712 TCCCTCCAAACTGCCTAGCT 60.548 55.000 0.00 0.00 0.00 3.32
3033 3253 0.548510 ATCCCTCCAAACTGCCTAGC 59.451 55.000 0.00 0.00 0.00 3.42
3034 3254 1.133976 CCATCCCTCCAAACTGCCTAG 60.134 57.143 0.00 0.00 0.00 3.02
3035 3255 0.918983 CCATCCCTCCAAACTGCCTA 59.081 55.000 0.00 0.00 0.00 3.93
3036 3256 0.846427 TCCATCCCTCCAAACTGCCT 60.846 55.000 0.00 0.00 0.00 4.75
3037 3257 0.394899 CTCCATCCCTCCAAACTGCC 60.395 60.000 0.00 0.00 0.00 4.85
3038 3258 0.394899 CCTCCATCCCTCCAAACTGC 60.395 60.000 0.00 0.00 0.00 4.40
3039 3259 0.995024 ACCTCCATCCCTCCAAACTG 59.005 55.000 0.00 0.00 0.00 3.16
3040 3260 0.995024 CACCTCCATCCCTCCAAACT 59.005 55.000 0.00 0.00 0.00 2.66
3041 3261 0.034089 CCACCTCCATCCCTCCAAAC 60.034 60.000 0.00 0.00 0.00 2.93
3042 3262 1.214305 CCCACCTCCATCCCTCCAAA 61.214 60.000 0.00 0.00 0.00 3.28
3043 3263 1.619363 CCCACCTCCATCCCTCCAA 60.619 63.158 0.00 0.00 0.00 3.53
3044 3264 2.042762 CCCACCTCCATCCCTCCA 59.957 66.667 0.00 0.00 0.00 3.86
3045 3265 2.042930 ACCCACCTCCATCCCTCC 59.957 66.667 0.00 0.00 0.00 4.30
3046 3266 1.306997 TCACCCACCTCCATCCCTC 60.307 63.158 0.00 0.00 0.00 4.30
3047 3267 1.616628 GTCACCCACCTCCATCCCT 60.617 63.158 0.00 0.00 0.00 4.20
3048 3268 2.998949 GTCACCCACCTCCATCCC 59.001 66.667 0.00 0.00 0.00 3.85
3049 3269 2.584608 CGTCACCCACCTCCATCC 59.415 66.667 0.00 0.00 0.00 3.51
3050 3270 2.125106 GCGTCACCCACCTCCATC 60.125 66.667 0.00 0.00 0.00 3.51
3051 3271 3.717294 GGCGTCACCCACCTCCAT 61.717 66.667 0.00 0.00 0.00 3.41
3053 3273 3.901797 CTTGGCGTCACCCACCTCC 62.902 68.421 0.00 0.00 37.83 4.30
3054 3274 2.358737 CTTGGCGTCACCCACCTC 60.359 66.667 0.00 0.00 37.83 3.85
3055 3275 2.847234 TCTTGGCGTCACCCACCT 60.847 61.111 0.00 0.00 37.83 4.00
3056 3276 2.668550 GTCTTGGCGTCACCCACC 60.669 66.667 0.00 0.00 37.83 4.61
3057 3277 1.961277 CAGTCTTGGCGTCACCCAC 60.961 63.158 0.00 0.00 37.83 4.61
3058 3278 2.377628 GACAGTCTTGGCGTCACCCA 62.378 60.000 0.00 0.00 37.83 4.51
3059 3279 1.668151 GACAGTCTTGGCGTCACCC 60.668 63.158 0.00 0.00 37.83 4.61
3060 3280 0.320771 ATGACAGTCTTGGCGTCACC 60.321 55.000 1.31 0.00 42.10 4.02
3061 3281 0.792640 CATGACAGTCTTGGCGTCAC 59.207 55.000 8.33 0.00 42.10 3.67
3062 3282 0.320683 CCATGACAGTCTTGGCGTCA 60.321 55.000 19.79 0.00 43.35 4.35
3063 3283 0.037326 TCCATGACAGTCTTGGCGTC 60.037 55.000 24.75 0.00 40.40 5.19
3064 3284 0.320771 GTCCATGACAGTCTTGGCGT 60.321 55.000 24.75 0.00 40.40 5.68
3065 3285 0.320683 TGTCCATGACAGTCTTGGCG 60.321 55.000 24.75 8.09 40.40 5.69
3066 3286 1.537202 GTTGTCCATGACAGTCTTGGC 59.463 52.381 24.75 20.20 43.69 4.52
3067 3287 1.800586 CGTTGTCCATGACAGTCTTGG 59.199 52.381 23.93 23.93 43.69 3.61
3068 3288 1.800586 CCGTTGTCCATGACAGTCTTG 59.199 52.381 9.11 9.11 43.69 3.02
3069 3289 1.416401 ACCGTTGTCCATGACAGTCTT 59.584 47.619 1.31 0.00 43.69 3.01
3070 3290 1.048601 ACCGTTGTCCATGACAGTCT 58.951 50.000 1.31 0.00 43.69 3.24
3071 3291 1.148310 CACCGTTGTCCATGACAGTC 58.852 55.000 0.00 0.00 43.69 3.51
3072 3292 0.756294 TCACCGTTGTCCATGACAGT 59.244 50.000 0.00 0.00 43.69 3.55
3073 3293 3.605013 TCACCGTTGTCCATGACAG 57.395 52.632 0.00 0.00 43.69 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.