Multiple sequence alignment - TraesCS5A01G190800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G190800 chr5A 100.000 4362 0 0 1 4362 395077886 395073525 0.000000e+00 8056.0
1 TraesCS5A01G190800 chr5A 88.854 314 31 3 4053 4362 7117623 7117310 2.460000e-102 383.0
2 TraesCS5A01G190800 chr5A 92.179 179 12 2 3711 3889 7117825 7117649 7.240000e-63 252.0
3 TraesCS5A01G190800 chr5A 84.211 95 12 2 3616 3707 44113432 44113338 6.010000e-14 89.8
4 TraesCS5A01G190800 chr5D 95.937 2535 69 12 1162 3685 60617979 60615468 0.000000e+00 4080.0
5 TraesCS5A01G190800 chr5D 94.026 385 20 3 786 1170 60618386 60618005 8.130000e-162 580.0
6 TraesCS5A01G190800 chr5D 81.679 393 43 12 1 389 302870251 302870618 2.550000e-77 300.0
7 TraesCS5A01G190800 chr4B 88.323 1276 90 24 1836 3070 188188505 188187248 0.000000e+00 1476.0
8 TraesCS5A01G190800 chr4B 85.848 643 55 20 3071 3707 188187158 188186546 0.000000e+00 651.0
9 TraesCS5A01G190800 chr4B 93.103 319 17 5 1163 1479 188191319 188191004 3.070000e-126 462.0
10 TraesCS5A01G190800 chr4B 92.742 248 16 2 1577 1823 188189114 188188868 1.490000e-94 357.0
11 TraesCS5A01G190800 chr4B 88.281 256 23 6 882 1132 188191573 188191320 2.550000e-77 300.0
12 TraesCS5A01G190800 chr4B 100.000 39 0 0 1495 1533 188191023 188190985 6.050000e-09 73.1
13 TraesCS5A01G190800 chr6D 89.429 946 60 21 2566 3482 438541867 438540933 0.000000e+00 1157.0
14 TraesCS5A01G190800 chr6D 92.192 730 47 2 1831 2554 438542671 438541946 0.000000e+00 1024.0
15 TraesCS5A01G190800 chr6D 89.371 668 64 4 3699 4362 48145526 48144862 0.000000e+00 833.0
16 TraesCS5A01G190800 chr6D 96.364 55 1 1 1 55 27060402 27060455 6.010000e-14 89.8
17 TraesCS5A01G190800 chr6B 91.245 731 55 4 1839 2563 423447616 423446889 0.000000e+00 987.0
18 TraesCS5A01G190800 chr6B 85.650 669 61 8 3018 3682 423422125 423421488 0.000000e+00 671.0
19 TraesCS5A01G190800 chr6B 87.371 483 30 11 2565 3023 423446828 423446353 3.860000e-145 525.0
20 TraesCS5A01G190800 chr6B 92.683 328 23 1 1495 1822 423669394 423669068 5.110000e-129 472.0
21 TraesCS5A01G190800 chr6B 94.737 95 5 0 1384 1478 423669470 423669376 9.770000e-32 148.0
22 TraesCS5A01G190800 chr7A 87.186 835 54 23 2905 3713 501147155 501146348 0.000000e+00 900.0
23 TraesCS5A01G190800 chr7A 92.483 439 25 3 2433 2870 501147721 501147290 4.790000e-174 621.0
24 TraesCS5A01G190800 chr7A 90.692 419 35 1 3948 4362 57798154 57797736 4.930000e-154 555.0
25 TraesCS5A01G190800 chr7A 86.667 90 9 2 3620 3706 661849061 661848972 3.590000e-16 97.1
26 TraesCS5A01G190800 chr7A 84.946 93 11 2 3617 3706 706479967 706480059 1.670000e-14 91.6
27 TraesCS5A01G190800 chr1D 90.611 458 40 3 3699 4156 62769199 62769653 4.830000e-169 604.0
28 TraesCS5A01G190800 chr1D 89.474 209 16 4 4160 4362 62779586 62779794 4.330000e-65 259.0
29 TraesCS5A01G190800 chr1D 96.154 52 2 0 1 52 409318509 409318560 7.770000e-13 86.1
30 TraesCS5A01G190800 chr2A 88.462 442 43 6 3918 4353 73691433 73690994 1.070000e-145 527.0
31 TraesCS5A01G190800 chr2A 95.000 60 2 1 1 59 706893909 706893968 4.640000e-15 93.5
32 TraesCS5A01G190800 chr2A 100.000 28 0 0 394 421 86673070 86673043 8.000000e-03 52.8
33 TraesCS5A01G190800 chr5B 90.534 412 15 3 1 393 347666136 347666542 1.390000e-144 523.0
34 TraesCS5A01G190800 chr5B 91.223 319 25 3 3699 4017 347669385 347669700 8.670000e-117 431.0
35 TraesCS5A01G190800 chr5B 86.667 270 32 1 4097 4362 347670965 347671234 3.300000e-76 296.0
36 TraesCS5A01G190800 chr5B 95.522 67 3 0 4006 4072 347670903 347670969 1.660000e-19 108.0
37 TraesCS5A01G190800 chr5B 100.000 32 0 0 526 557 702550315 702550284 4.710000e-05 60.2
38 TraesCS5A01G190800 chr2D 90.545 275 22 2 4092 4362 74317287 74317013 1.150000e-95 361.0
39 TraesCS5A01G190800 chr2D 89.222 167 16 1 3918 4084 74328052 74327888 1.590000e-49 207.0
40 TraesCS5A01G190800 chr2D 86.022 93 10 2 3617 3706 24751480 24751572 3.590000e-16 97.1
41 TraesCS5A01G190800 chr4D 88.235 85 10 0 3623 3707 427027519 427027603 7.720000e-18 102.0
42 TraesCS5A01G190800 chr3B 100.000 54 0 0 1 54 3272251 3272304 2.780000e-17 100.0
43 TraesCS5A01G190800 chr3B 98.148 54 0 1 1 53 659273747 659273800 4.640000e-15 93.5
44 TraesCS5A01G190800 chr3D 100.000 53 0 0 1 53 2599734 2599682 9.980000e-17 99.0
45 TraesCS5A01G190800 chr4A 86.170 94 8 4 3617 3706 38777969 38778061 3.590000e-16 97.1
46 TraesCS5A01G190800 chr1A 89.855 69 3 4 1 65 505297774 505297842 7.770000e-13 86.1
47 TraesCS5A01G190800 chr2B 96.774 31 1 0 391 421 794418943 794418973 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G190800 chr5A 395073525 395077886 4361 True 8056.000000 8056 100.000000 1 4362 1 chr5A.!!$R2 4361
1 TraesCS5A01G190800 chr5A 7117310 7117825 515 True 317.500000 383 90.516500 3711 4362 2 chr5A.!!$R3 651
2 TraesCS5A01G190800 chr5D 60615468 60618386 2918 True 2330.000000 4080 94.981500 786 3685 2 chr5D.!!$R1 2899
3 TraesCS5A01G190800 chr4B 188186546 188191573 5027 True 553.183333 1476 91.382833 882 3707 6 chr4B.!!$R1 2825
4 TraesCS5A01G190800 chr6D 438540933 438542671 1738 True 1090.500000 1157 90.810500 1831 3482 2 chr6D.!!$R2 1651
5 TraesCS5A01G190800 chr6D 48144862 48145526 664 True 833.000000 833 89.371000 3699 4362 1 chr6D.!!$R1 663
6 TraesCS5A01G190800 chr6B 423446353 423447616 1263 True 756.000000 987 89.308000 1839 3023 2 chr6B.!!$R2 1184
7 TraesCS5A01G190800 chr6B 423421488 423422125 637 True 671.000000 671 85.650000 3018 3682 1 chr6B.!!$R1 664
8 TraesCS5A01G190800 chr7A 501146348 501147721 1373 True 760.500000 900 89.834500 2433 3713 2 chr7A.!!$R3 1280
9 TraesCS5A01G190800 chr5B 347666136 347671234 5098 False 339.500000 523 90.986500 1 4362 4 chr5B.!!$F1 4361

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 445 0.036105 TGTGCATCAAGGTCGCTCAT 60.036 50.000 0.00 0.00 0.00 2.90 F
513 533 0.095935 CCAATCGCGACAGAGCTTTG 59.904 55.000 12.93 10.38 34.40 2.77 F
672 692 0.175531 CCGGGCCCATTGTCAATTTC 59.824 55.000 24.92 0.00 0.00 2.17 F
724 744 0.325933 TAACCTCGACCTCGTCCTCA 59.674 55.000 0.00 0.00 40.80 3.86 F
904 924 0.465097 TACCTCCCCTAGAACGCGAG 60.465 60.000 15.93 0.00 0.00 5.03 F
1648 3534 1.195448 GTGTCATCGTGTGCTTTCAGG 59.805 52.381 0.00 0.00 0.00 3.86 F
3297 5836 0.249741 ACGTGTCGGAACTTCCAAGG 60.250 55.000 8.59 1.86 35.91 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2384 4636 2.686915 CTGTGAAATCCCATTCTCCTGC 59.313 50.000 0.00 0.00 0.00 4.85 R
2461 4723 6.645790 AACAGAGAGAAACAATTGCAGAAT 57.354 33.333 5.05 0.00 0.00 2.40 R
2642 4971 0.319083 ACCACGCCGTTGAAGTATCA 59.681 50.000 0.00 0.00 0.00 2.15 R
2648 4977 2.223876 GGAGATATACCACGCCGTTGAA 60.224 50.000 0.00 0.00 0.00 2.69 R
2821 5151 9.760660 CAGCAAAACAATTATAAGACTACAGTC 57.239 33.333 0.91 0.91 45.08 3.51 R
3322 5861 2.084546 GACTTGAGGGGAAAACCGATG 58.915 52.381 0.00 0.00 41.60 3.84 R
4291 10212 0.396139 AGTGCTATCCCCGTTCCGTA 60.396 55.000 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 2.744202 AGCTAAAGTCGGCTTGTGATTG 59.256 45.455 1.40 0.00 34.96 2.67
87 88 9.052759 CAAACACACCCTACTTATATATTGACC 57.947 37.037 0.00 0.00 0.00 4.02
88 89 6.989659 ACACACCCTACTTATATATTGACCG 58.010 40.000 0.00 0.00 0.00 4.79
89 90 6.014840 ACACACCCTACTTATATATTGACCGG 60.015 42.308 0.00 0.00 0.00 5.28
90 91 6.014840 CACACCCTACTTATATATTGACCGGT 60.015 42.308 6.92 6.92 0.00 5.28
91 92 6.014840 ACACCCTACTTATATATTGACCGGTG 60.015 42.308 14.63 12.44 41.26 4.94
104 105 0.171903 ACCGGTGTAGAATCGTTCCG 59.828 55.000 6.12 0.00 38.05 4.30
119 120 2.680577 GTTCCGAACGTACCAACAGAT 58.319 47.619 0.00 0.00 0.00 2.90
120 121 3.836949 GTTCCGAACGTACCAACAGATA 58.163 45.455 0.00 0.00 0.00 1.98
124 130 4.865925 TCCGAACGTACCAACAGATATTTG 59.134 41.667 0.00 0.00 0.00 2.32
311 331 6.485393 GCTCATCAATCTTAACTTCTTGAGC 58.515 40.000 5.46 5.46 44.41 4.26
319 339 1.512926 AACTTCTTGAGCGAACGCAT 58.487 45.000 20.66 6.43 44.88 4.73
325 345 2.607635 TCTTGAGCGAACGCATTATTCC 59.392 45.455 20.66 2.45 44.88 3.01
334 354 3.393089 ACGCATTATTCCTCCTAGCAG 57.607 47.619 0.00 0.00 0.00 4.24
337 357 2.224621 GCATTATTCCTCCTAGCAGCCA 60.225 50.000 0.00 0.00 0.00 4.75
380 400 1.004320 TGCGGCGACAAGTAATGGT 60.004 52.632 12.98 0.00 0.00 3.55
393 413 5.581085 ACAAGTAATGGTCGAGAAGTAATGC 59.419 40.000 0.00 0.00 0.00 3.56
394 414 5.339008 AGTAATGGTCGAGAAGTAATGCA 57.661 39.130 0.00 0.00 0.00 3.96
395 415 5.730550 AGTAATGGTCGAGAAGTAATGCAA 58.269 37.500 0.00 0.00 0.00 4.08
396 416 6.170506 AGTAATGGTCGAGAAGTAATGCAAA 58.829 36.000 0.00 0.00 0.00 3.68
397 417 5.957842 AATGGTCGAGAAGTAATGCAAAA 57.042 34.783 0.00 0.00 0.00 2.44
398 418 4.742438 TGGTCGAGAAGTAATGCAAAAC 57.258 40.909 0.00 0.00 0.00 2.43
399 419 4.130857 TGGTCGAGAAGTAATGCAAAACA 58.869 39.130 0.00 0.00 0.00 2.83
400 420 4.576873 TGGTCGAGAAGTAATGCAAAACAA 59.423 37.500 0.00 0.00 0.00 2.83
401 421 5.240623 TGGTCGAGAAGTAATGCAAAACAAT 59.759 36.000 0.00 0.00 0.00 2.71
405 425 7.481798 GTCGAGAAGTAATGCAAAACAATAAGG 59.518 37.037 0.00 0.00 0.00 2.69
406 426 7.174253 TCGAGAAGTAATGCAAAACAATAAGGT 59.826 33.333 0.00 0.00 0.00 3.50
407 427 7.271223 CGAGAAGTAATGCAAAACAATAAGGTG 59.729 37.037 0.00 0.00 0.00 4.00
408 428 7.951591 AGAAGTAATGCAAAACAATAAGGTGT 58.048 30.769 0.00 0.00 0.00 4.16
410 430 5.925969 AGTAATGCAAAACAATAAGGTGTGC 59.074 36.000 0.00 0.00 34.75 4.57
411 431 3.808466 TGCAAAACAATAAGGTGTGCA 57.192 38.095 0.00 0.00 39.14 4.57
412 432 4.333913 TGCAAAACAATAAGGTGTGCAT 57.666 36.364 0.00 0.00 37.57 3.96
413 433 4.305769 TGCAAAACAATAAGGTGTGCATC 58.694 39.130 0.00 0.00 37.57 3.91
414 434 4.202192 TGCAAAACAATAAGGTGTGCATCA 60.202 37.500 0.00 0.00 37.57 3.07
415 435 4.749099 GCAAAACAATAAGGTGTGCATCAA 59.251 37.500 0.00 0.00 34.47 2.57
417 437 4.789012 AACAATAAGGTGTGCATCAAGG 57.211 40.909 0.00 0.00 0.00 3.61
418 438 3.766545 ACAATAAGGTGTGCATCAAGGT 58.233 40.909 0.00 0.00 0.00 3.50
419 439 3.758554 ACAATAAGGTGTGCATCAAGGTC 59.241 43.478 0.00 0.00 0.00 3.85
420 440 2.093306 TAAGGTGTGCATCAAGGTCG 57.907 50.000 0.00 0.00 0.00 4.79
421 441 1.237285 AAGGTGTGCATCAAGGTCGC 61.237 55.000 0.00 0.00 0.00 5.19
422 442 1.672356 GGTGTGCATCAAGGTCGCT 60.672 57.895 0.00 0.00 0.00 4.93
424 444 0.950555 GTGTGCATCAAGGTCGCTCA 60.951 55.000 0.00 0.00 0.00 4.26
425 445 0.036105 TGTGCATCAAGGTCGCTCAT 60.036 50.000 0.00 0.00 0.00 2.90
426 446 1.089920 GTGCATCAAGGTCGCTCATT 58.910 50.000 0.00 0.00 0.00 2.57
427 447 1.089112 TGCATCAAGGTCGCTCATTG 58.911 50.000 0.00 0.00 38.91 2.82
428 448 0.379669 GCATCAAGGTCGCTCATTGG 59.620 55.000 5.37 0.00 38.23 3.16
429 449 1.019673 CATCAAGGTCGCTCATTGGG 58.980 55.000 5.37 0.00 38.23 4.12
430 450 0.620556 ATCAAGGTCGCTCATTGGGT 59.379 50.000 5.37 0.00 38.23 4.51
432 452 0.606401 CAAGGTCGCTCATTGGGTGT 60.606 55.000 0.00 0.00 34.67 4.16
433 453 0.606401 AAGGTCGCTCATTGGGTGTG 60.606 55.000 0.00 0.00 0.00 3.82
436 456 1.003839 TCGCTCATTGGGTGTGTCC 60.004 57.895 0.00 0.00 0.00 4.02
438 458 1.577328 CGCTCATTGGGTGTGTCCAC 61.577 60.000 0.00 0.00 41.06 4.02
439 459 1.577328 GCTCATTGGGTGTGTCCACG 61.577 60.000 0.00 0.00 42.80 4.94
440 460 0.250295 CTCATTGGGTGTGTCCACGT 60.250 55.000 0.00 0.00 42.80 4.49
444 464 1.121378 TTGGGTGTGTCCACGTTAGA 58.879 50.000 0.00 0.00 42.80 2.10
447 467 1.888512 GGGTGTGTCCACGTTAGACTA 59.111 52.381 14.72 3.82 42.80 2.59
448 468 2.094854 GGGTGTGTCCACGTTAGACTAG 60.095 54.545 14.72 0.00 42.80 2.57
449 469 2.593257 GTGTGTCCACGTTAGACTAGC 58.407 52.381 14.72 7.37 35.21 3.42
451 471 3.438087 GTGTGTCCACGTTAGACTAGCTA 59.562 47.826 14.72 0.00 35.21 3.32
452 472 3.688185 TGTGTCCACGTTAGACTAGCTAG 59.312 47.826 19.44 19.44 35.21 3.42
453 473 3.065095 GTGTCCACGTTAGACTAGCTAGG 59.935 52.174 24.35 8.17 35.21 3.02
454 474 2.617774 GTCCACGTTAGACTAGCTAGGG 59.382 54.545 24.35 12.96 0.00 3.53
456 476 2.617774 CCACGTTAGACTAGCTAGGGAC 59.382 54.545 24.35 14.61 0.00 4.46
457 477 3.276857 CACGTTAGACTAGCTAGGGACA 58.723 50.000 24.35 4.27 0.00 4.02
460 480 4.768968 ACGTTAGACTAGCTAGGGACAAAA 59.231 41.667 24.35 10.70 0.00 2.44
462 482 5.575995 CGTTAGACTAGCTAGGGACAAAAAC 59.424 44.000 24.35 15.34 0.00 2.43
463 483 4.189639 AGACTAGCTAGGGACAAAAACG 57.810 45.455 24.35 0.00 0.00 3.60
464 484 2.671888 GACTAGCTAGGGACAAAAACGC 59.328 50.000 24.35 0.00 0.00 4.84
465 485 2.302157 ACTAGCTAGGGACAAAAACGCT 59.698 45.455 24.35 0.00 34.98 5.07
466 486 1.523758 AGCTAGGGACAAAAACGCTG 58.476 50.000 0.00 0.00 32.98 5.18
467 487 0.109735 GCTAGGGACAAAAACGCTGC 60.110 55.000 0.00 0.00 32.98 5.25
468 488 0.521735 CTAGGGACAAAAACGCTGCC 59.478 55.000 0.00 0.00 32.98 4.85
469 489 1.231958 TAGGGACAAAAACGCTGCCG 61.232 55.000 0.00 0.00 41.14 5.69
470 490 2.050442 GGACAAAAACGCTGCCGG 60.050 61.111 0.00 0.00 39.22 6.13
471 491 2.729491 GACAAAAACGCTGCCGGC 60.729 61.111 22.73 22.73 39.22 6.13
472 492 3.477224 GACAAAAACGCTGCCGGCA 62.477 57.895 30.59 30.59 41.91 5.69
496 516 0.104487 CATTGCATAAATGGCGGCCA 59.896 50.000 26.11 26.11 41.80 5.36
497 517 0.829333 ATTGCATAAATGGCGGCCAA 59.171 45.000 27.70 10.49 36.95 4.52
498 518 0.829333 TTGCATAAATGGCGGCCAAT 59.171 45.000 27.70 16.10 36.95 3.16
500 520 0.664166 GCATAAATGGCGGCCAATCG 60.664 55.000 27.70 13.68 36.95 3.34
508 528 3.257561 CGGCCAATCGCGACAGAG 61.258 66.667 12.93 1.23 38.94 3.35
509 529 3.567797 GGCCAATCGCGACAGAGC 61.568 66.667 12.93 12.54 38.94 4.09
510 530 2.510238 GCCAATCGCGACAGAGCT 60.510 61.111 12.93 0.00 34.40 4.09
511 531 2.103042 GCCAATCGCGACAGAGCTT 61.103 57.895 12.93 0.00 34.40 3.74
512 532 1.639298 GCCAATCGCGACAGAGCTTT 61.639 55.000 12.93 0.00 34.40 3.51
513 533 0.095935 CCAATCGCGACAGAGCTTTG 59.904 55.000 12.93 10.38 34.40 2.77
514 534 0.519999 CAATCGCGACAGAGCTTTGC 60.520 55.000 12.93 0.00 34.40 3.68
516 536 4.783841 CGCGACAGAGCTTTGCGC 62.784 66.667 25.22 25.22 42.42 6.09
517 537 4.783841 GCGACAGAGCTTTGCGCG 62.784 66.667 22.64 18.35 45.59 6.86
518 538 4.139420 CGACAGAGCTTTGCGCGG 62.139 66.667 8.83 0.00 45.59 6.46
519 539 2.738521 GACAGAGCTTTGCGCGGA 60.739 61.111 8.83 0.00 45.59 5.54
520 540 2.734673 GACAGAGCTTTGCGCGGAG 61.735 63.158 8.83 3.90 45.59 4.63
533 553 4.722193 CGGAGCAATTCCTGGTGT 57.278 55.556 0.00 0.00 44.41 4.16
534 554 2.174334 CGGAGCAATTCCTGGTGTG 58.826 57.895 0.00 0.00 44.41 3.82
535 555 1.308069 CGGAGCAATTCCTGGTGTGG 61.308 60.000 0.00 0.00 44.41 4.17
537 557 0.883833 GAGCAATTCCTGGTGTGGTG 59.116 55.000 0.00 0.00 35.35 4.17
538 558 1.181098 AGCAATTCCTGGTGTGGTGC 61.181 55.000 0.00 0.00 33.42 5.01
540 560 1.150536 AATTCCTGGTGTGGTGCGT 59.849 52.632 0.00 0.00 0.00 5.24
541 561 1.172180 AATTCCTGGTGTGGTGCGTG 61.172 55.000 0.00 0.00 0.00 5.34
542 562 3.765894 TTCCTGGTGTGGTGCGTGG 62.766 63.158 0.00 0.00 0.00 4.94
548 568 4.497984 TGTGGTGCGTGGCCAGTT 62.498 61.111 5.11 0.00 36.57 3.16
552 572 2.904866 GTGCGTGGCCAGTTGGAA 60.905 61.111 5.11 0.00 37.39 3.53
553 573 2.594303 TGCGTGGCCAGTTGGAAG 60.594 61.111 5.11 0.00 37.39 3.46
554 574 3.365265 GCGTGGCCAGTTGGAAGG 61.365 66.667 5.11 0.00 37.39 3.46
559 579 3.741476 GCCAGTTGGAAGGCGCTG 61.741 66.667 7.64 0.00 41.70 5.18
560 580 3.058160 CCAGTTGGAAGGCGCTGG 61.058 66.667 7.64 0.00 41.89 4.85
561 581 2.281761 CAGTTGGAAGGCGCTGGT 60.282 61.111 7.64 0.00 0.00 4.00
562 582 1.898574 CAGTTGGAAGGCGCTGGTT 60.899 57.895 7.64 0.00 0.00 3.67
609 629 4.695231 CGGTTCGCGTCACCTCGT 62.695 66.667 22.27 0.00 31.32 4.18
611 631 3.764049 GTTCGCGTCACCTCGTGC 61.764 66.667 5.77 0.00 40.47 5.34
625 645 3.414700 GTGCGCACCCGAGTTCAG 61.415 66.667 30.12 0.00 36.29 3.02
626 646 3.923864 TGCGCACCCGAGTTCAGT 61.924 61.111 5.66 0.00 36.29 3.41
627 647 2.260434 GCGCACCCGAGTTCAGTA 59.740 61.111 0.30 0.00 36.29 2.74
628 648 1.805945 GCGCACCCGAGTTCAGTAG 60.806 63.158 0.30 0.00 36.29 2.57
629 649 1.805945 CGCACCCGAGTTCAGTAGC 60.806 63.158 0.00 0.00 36.29 3.58
631 651 0.815734 GCACCCGAGTTCAGTAGCTA 59.184 55.000 0.00 0.00 0.00 3.32
632 652 1.469423 GCACCCGAGTTCAGTAGCTAC 60.469 57.143 16.43 16.43 0.00 3.58
633 653 1.816835 CACCCGAGTTCAGTAGCTACA 59.183 52.381 25.28 3.04 0.00 2.74
634 654 2.093106 ACCCGAGTTCAGTAGCTACAG 58.907 52.381 25.28 17.79 0.00 2.74
638 658 2.159366 CGAGTTCAGTAGCTACAGGTGG 60.159 54.545 25.28 9.43 0.00 4.61
639 659 2.826725 GAGTTCAGTAGCTACAGGTGGT 59.173 50.000 25.28 5.58 0.00 4.16
640 660 2.826725 AGTTCAGTAGCTACAGGTGGTC 59.173 50.000 25.28 11.23 0.00 4.02
641 661 1.848652 TCAGTAGCTACAGGTGGTCC 58.151 55.000 25.28 0.00 0.00 4.46
644 664 1.078989 AGTAGCTACAGGTGGTCCCTT 59.921 52.381 25.28 0.00 42.73 3.95
645 665 1.207329 GTAGCTACAGGTGGTCCCTTG 59.793 57.143 19.15 0.00 42.73 3.61
646 666 0.473886 AGCTACAGGTGGTCCCTTGT 60.474 55.000 0.00 1.72 42.73 3.16
647 667 0.400594 GCTACAGGTGGTCCCTTGTT 59.599 55.000 1.42 0.00 42.73 2.83
648 668 1.202891 GCTACAGGTGGTCCCTTGTTT 60.203 52.381 1.42 0.00 42.73 2.83
649 669 2.751816 GCTACAGGTGGTCCCTTGTTTT 60.752 50.000 1.42 0.00 42.73 2.43
650 670 2.543037 ACAGGTGGTCCCTTGTTTTT 57.457 45.000 0.00 0.00 42.73 1.94
651 671 2.384828 ACAGGTGGTCCCTTGTTTTTC 58.615 47.619 0.00 0.00 42.73 2.29
652 672 2.024369 ACAGGTGGTCCCTTGTTTTTCT 60.024 45.455 0.00 0.00 42.73 2.52
653 673 2.623416 CAGGTGGTCCCTTGTTTTTCTC 59.377 50.000 0.00 0.00 42.73 2.87
655 675 1.607148 GTGGTCCCTTGTTTTTCTCCG 59.393 52.381 0.00 0.00 0.00 4.63
656 676 1.244816 GGTCCCTTGTTTTTCTCCGG 58.755 55.000 0.00 0.00 0.00 5.14
657 677 1.244816 GTCCCTTGTTTTTCTCCGGG 58.755 55.000 0.00 0.00 0.00 5.73
659 679 1.532604 CCCTTGTTTTTCTCCGGGCC 61.533 60.000 0.00 0.00 0.00 5.80
660 680 1.532604 CCTTGTTTTTCTCCGGGCCC 61.533 60.000 13.57 13.57 0.00 5.80
661 681 0.825840 CTTGTTTTTCTCCGGGCCCA 60.826 55.000 24.92 0.93 0.00 5.36
662 682 0.178947 TTGTTTTTCTCCGGGCCCAT 60.179 50.000 24.92 0.00 0.00 4.00
663 683 0.178947 TGTTTTTCTCCGGGCCCATT 60.179 50.000 24.92 0.00 0.00 3.16
664 684 0.246360 GTTTTTCTCCGGGCCCATTG 59.754 55.000 24.92 9.87 0.00 2.82
665 685 0.178947 TTTTTCTCCGGGCCCATTGT 60.179 50.000 24.92 0.00 0.00 2.71
666 686 0.610785 TTTTCTCCGGGCCCATTGTC 60.611 55.000 24.92 0.00 0.00 3.18
667 687 1.784301 TTTCTCCGGGCCCATTGTCA 61.784 55.000 24.92 0.00 0.00 3.58
668 688 1.784301 TTCTCCGGGCCCATTGTCAA 61.784 55.000 24.92 2.92 0.00 3.18
669 689 1.076777 CTCCGGGCCCATTGTCAAT 60.077 57.895 24.92 0.00 0.00 2.57
671 691 0.252012 TCCGGGCCCATTGTCAATTT 60.252 50.000 24.92 0.00 0.00 1.82
672 692 0.175531 CCGGGCCCATTGTCAATTTC 59.824 55.000 24.92 0.00 0.00 2.17
673 693 1.185315 CGGGCCCATTGTCAATTTCT 58.815 50.000 24.92 0.00 0.00 2.52
674 694 1.550072 CGGGCCCATTGTCAATTTCTT 59.450 47.619 24.92 0.00 0.00 2.52
675 695 2.028203 CGGGCCCATTGTCAATTTCTTT 60.028 45.455 24.92 0.00 0.00 2.52
676 696 3.337358 GGGCCCATTGTCAATTTCTTTG 58.663 45.455 19.95 0.00 36.61 2.77
677 697 3.244526 GGGCCCATTGTCAATTTCTTTGT 60.245 43.478 19.95 0.00 36.65 2.83
679 699 4.379652 GCCCATTGTCAATTTCTTTGTGT 58.620 39.130 0.00 0.00 36.65 3.72
680 700 4.211794 GCCCATTGTCAATTTCTTTGTGTG 59.788 41.667 0.00 0.00 36.65 3.82
682 702 5.816777 CCCATTGTCAATTTCTTTGTGTGTT 59.183 36.000 0.00 0.00 36.65 3.32
683 703 6.315891 CCCATTGTCAATTTCTTTGTGTGTTT 59.684 34.615 0.00 0.00 36.65 2.83
684 704 7.181418 CCATTGTCAATTTCTTTGTGTGTTTG 58.819 34.615 0.00 0.00 36.65 2.93
686 706 5.477510 TGTCAATTTCTTTGTGTGTTTGCT 58.522 33.333 0.00 0.00 36.65 3.91
687 707 5.931146 TGTCAATTTCTTTGTGTGTTTGCTT 59.069 32.000 0.00 0.00 36.65 3.91
688 708 6.426328 TGTCAATTTCTTTGTGTGTTTGCTTT 59.574 30.769 0.00 0.00 36.65 3.51
689 709 6.737750 GTCAATTTCTTTGTGTGTTTGCTTTG 59.262 34.615 0.00 0.00 36.65 2.77
690 710 6.426328 TCAATTTCTTTGTGTGTTTGCTTTGT 59.574 30.769 0.00 0.00 36.65 2.83
691 711 6.799926 ATTTCTTTGTGTGTTTGCTTTGTT 57.200 29.167 0.00 0.00 0.00 2.83
692 712 5.588568 TTCTTTGTGTGTTTGCTTTGTTG 57.411 34.783 0.00 0.00 0.00 3.33
693 713 4.626042 TCTTTGTGTGTTTGCTTTGTTGT 58.374 34.783 0.00 0.00 0.00 3.32
694 714 4.447054 TCTTTGTGTGTTTGCTTTGTTGTG 59.553 37.500 0.00 0.00 0.00 3.33
697 717 2.736192 GTGTGTTTGCTTTGTTGTGCTT 59.264 40.909 0.00 0.00 0.00 3.91
698 718 2.735663 TGTGTTTGCTTTGTTGTGCTTG 59.264 40.909 0.00 0.00 0.00 4.01
699 719 2.736192 GTGTTTGCTTTGTTGTGCTTGT 59.264 40.909 0.00 0.00 0.00 3.16
701 721 4.387256 GTGTTTGCTTTGTTGTGCTTGTAA 59.613 37.500 0.00 0.00 0.00 2.41
702 722 5.063312 GTGTTTGCTTTGTTGTGCTTGTAAT 59.937 36.000 0.00 0.00 0.00 1.89
705 725 7.493971 TGTTTGCTTTGTTGTGCTTGTAATATT 59.506 29.630 0.00 0.00 0.00 1.28
706 726 8.973378 GTTTGCTTTGTTGTGCTTGTAATATTA 58.027 29.630 0.00 0.00 0.00 0.98
707 727 9.534565 TTTGCTTTGTTGTGCTTGTAATATTAA 57.465 25.926 0.00 0.00 0.00 1.40
708 728 8.514136 TGCTTTGTTGTGCTTGTAATATTAAC 57.486 30.769 0.00 0.00 0.00 2.01
709 729 7.596995 TGCTTTGTTGTGCTTGTAATATTAACC 59.403 33.333 0.00 0.00 0.00 2.85
710 730 7.812669 GCTTTGTTGTGCTTGTAATATTAACCT 59.187 33.333 0.00 0.00 0.00 3.50
713 733 6.874664 TGTTGTGCTTGTAATATTAACCTCGA 59.125 34.615 0.00 0.00 0.00 4.04
714 734 6.897259 TGTGCTTGTAATATTAACCTCGAC 57.103 37.500 0.00 0.00 0.00 4.20
715 735 5.813672 TGTGCTTGTAATATTAACCTCGACC 59.186 40.000 0.00 0.00 0.00 4.79
716 736 6.047231 GTGCTTGTAATATTAACCTCGACCT 58.953 40.000 0.00 0.00 0.00 3.85
717 737 6.200475 GTGCTTGTAATATTAACCTCGACCTC 59.800 42.308 0.00 0.00 0.00 3.85
718 738 5.401674 GCTTGTAATATTAACCTCGACCTCG 59.598 44.000 0.00 0.00 41.45 4.63
719 739 6.455360 TTGTAATATTAACCTCGACCTCGT 57.545 37.500 0.00 0.00 40.80 4.18
721 741 4.581077 AATATTAACCTCGACCTCGTCC 57.419 45.455 0.00 0.00 40.80 4.79
722 742 2.140839 ATTAACCTCGACCTCGTCCT 57.859 50.000 0.00 0.00 40.80 3.85
724 744 0.325933 TAACCTCGACCTCGTCCTCA 59.674 55.000 0.00 0.00 40.80 3.86
725 745 0.961358 AACCTCGACCTCGTCCTCAG 60.961 60.000 0.00 0.00 40.80 3.35
726 746 2.766400 CCTCGACCTCGTCCTCAGC 61.766 68.421 0.00 0.00 40.80 4.26
728 748 4.180946 CGACCTCGTCCTCAGCGG 62.181 72.222 0.00 0.00 34.11 5.52
729 749 3.063084 GACCTCGTCCTCAGCGGT 61.063 66.667 0.00 0.00 0.00 5.68
731 751 3.374402 CCTCGTCCTCAGCGGTGT 61.374 66.667 15.22 0.00 0.00 4.16
733 753 2.596338 TCGTCCTCAGCGGTGTCA 60.596 61.111 15.22 0.00 0.00 3.58
734 754 2.126307 CGTCCTCAGCGGTGTCAG 60.126 66.667 15.22 5.39 0.00 3.51
736 756 4.056125 TCCTCAGCGGTGTCAGCG 62.056 66.667 19.75 19.75 42.73 5.18
745 765 3.116531 GTGTCAGCGCCGGTTACC 61.117 66.667 2.29 0.00 0.00 2.85
754 774 3.784412 CCGGTTACCGCGCTTGTG 61.784 66.667 19.48 0.00 46.86 3.33
755 775 3.039588 CGGTTACCGCGCTTGTGT 61.040 61.111 11.93 0.00 41.17 3.72
756 776 2.554272 GGTTACCGCGCTTGTGTG 59.446 61.111 5.56 0.00 0.00 3.82
757 777 2.127383 GTTACCGCGCTTGTGTGC 60.127 61.111 5.56 0.00 45.43 4.57
819 839 2.589540 GCGATGGGTGGGATGTGA 59.410 61.111 0.00 0.00 0.00 3.58
827 847 1.086696 GGTGGGATGTGATGTCAACG 58.913 55.000 0.00 0.00 0.00 4.10
830 850 2.671396 GTGGGATGTGATGTCAACGTAC 59.329 50.000 0.00 0.00 0.00 3.67
864 884 2.090719 CCCAGATACAACCTCCCCTCTA 60.091 54.545 0.00 0.00 0.00 2.43
868 888 5.222358 CCAGATACAACCTCCCCTCTATCTA 60.222 48.000 0.00 0.00 0.00 1.98
904 924 0.465097 TACCTCCCCTAGAACGCGAG 60.465 60.000 15.93 0.00 0.00 5.03
973 993 1.971695 CCTTTCTCCGTTGCCCCAC 60.972 63.158 0.00 0.00 0.00 4.61
1020 1041 2.757099 GAGGCCCTGCAACCCATG 60.757 66.667 0.00 0.00 0.00 3.66
1151 1176 1.982660 TGCTACCTAGACCAGATCGG 58.017 55.000 0.00 2.55 42.50 4.18
1233 1291 5.010282 TCCCTTGTATTTCTCTTCCTTTGC 58.990 41.667 0.00 0.00 0.00 3.68
1460 1519 9.409312 CTTCACTAGCAGAATGTTCATCTATAG 57.591 37.037 0.00 0.00 39.31 1.31
1535 1594 3.685139 TCAGAAAATCAAGCGAGGACT 57.315 42.857 0.00 0.00 0.00 3.85
1545 1604 4.389374 TCAAGCGAGGACTTTGAGAAAAT 58.611 39.130 0.00 0.00 0.00 1.82
1648 3534 1.195448 GTGTCATCGTGTGCTTTCAGG 59.805 52.381 0.00 0.00 0.00 3.86
1732 3618 2.940147 TGTGTTTGTTGTTCACACTGC 58.060 42.857 3.54 0.00 37.20 4.40
1775 3662 2.999355 GTCTCAGGTTGTTCATCTCAGC 59.001 50.000 0.00 0.00 0.00 4.26
1873 4110 7.408543 ACTCACTTGGTATCTGGTACTTACTA 58.591 38.462 0.00 0.00 33.64 1.82
2048 4288 5.888724 GGCCTCAGTGCTACTATCATATAGA 59.111 44.000 0.00 0.00 0.00 1.98
2384 4636 7.281100 GTCACAATGAAATCTAGGGAACTAAGG 59.719 40.741 0.00 0.00 43.83 2.69
2461 4723 7.792364 TCCTTCTCTACATTAGGAGTTTCAA 57.208 36.000 0.00 0.00 33.08 2.69
2559 4829 3.625745 GTGTCTACCACAACCCAGG 57.374 57.895 0.00 0.00 43.92 4.45
2624 4952 5.663795 ACATCATCTATGCTTAGTTTGCG 57.336 39.130 6.53 4.33 39.39 4.85
2642 4971 6.094881 AGTTTGCGCATATTATGTTGGTACTT 59.905 34.615 12.75 0.00 0.00 2.24
2643 4972 5.416862 TGCGCATATTATGTTGGTACTTG 57.583 39.130 5.66 0.00 0.00 3.16
2644 4973 5.119694 TGCGCATATTATGTTGGTACTTGA 58.880 37.500 5.66 0.00 0.00 3.02
2645 4974 5.762711 TGCGCATATTATGTTGGTACTTGAT 59.237 36.000 5.66 0.00 0.00 2.57
2646 4975 6.931840 TGCGCATATTATGTTGGTACTTGATA 59.068 34.615 5.66 0.00 0.00 2.15
2647 4976 7.095397 TGCGCATATTATGTTGGTACTTGATAC 60.095 37.037 5.66 0.00 0.00 2.24
2648 4977 7.117812 GCGCATATTATGTTGGTACTTGATACT 59.882 37.037 0.30 0.00 33.87 2.12
2890 5236 4.864704 TGCAATTTTGGGAAAGGTCTAC 57.135 40.909 0.00 0.00 0.00 2.59
3116 5653 4.937015 GCAGGGAAAATTACAATGCATGTT 59.063 37.500 0.00 0.00 43.63 2.71
3119 5656 5.047377 AGGGAAAATTACAATGCATGTTCGT 60.047 36.000 0.00 0.00 43.63 3.85
3297 5836 0.249741 ACGTGTCGGAACTTCCAAGG 60.250 55.000 8.59 1.86 35.91 3.61
3322 5861 7.201652 GGAAATGTCTCTCTGTGGCTAAAATAC 60.202 40.741 0.00 0.00 0.00 1.89
3386 5925 3.125316 GGTCGGTCACTGTCAATTGAATC 59.875 47.826 10.35 0.00 0.00 2.52
3388 5927 2.420022 CGGTCACTGTCAATTGAATCCC 59.580 50.000 10.35 4.03 0.00 3.85
3585 6124 3.529252 GCGCTATGCTCATCTGGAT 57.471 52.632 0.00 0.00 41.73 3.41
3649 7103 8.015658 AGACATTAACAAATACGAAAGCTTGAC 58.984 33.333 0.00 0.00 0.00 3.18
3835 8542 8.776376 TTATCAAAGGAAAAATCTTCAATGGC 57.224 30.769 0.00 0.00 0.00 4.40
3839 8546 4.946646 AGGAAAAATCTTCAATGGCCCTA 58.053 39.130 0.00 0.00 0.00 3.53
3842 8549 5.163509 GGAAAAATCTTCAATGGCCCTAGAC 60.164 44.000 0.00 0.00 0.00 2.59
3926 8633 2.115266 CAGGGTTGGGTCGCCTTT 59.885 61.111 0.00 0.00 0.00 3.11
3945 8652 3.947910 TTTCGGTCGATGGTTCTTACT 57.052 42.857 0.00 0.00 0.00 2.24
3959 8666 4.181578 GTTCTTACTACGCACATGATGGT 58.818 43.478 0.00 0.00 0.00 3.55
4010 8717 7.116948 CGAGATAATAACGGCAAGATGATCTTT 59.883 37.037 4.67 0.00 33.78 2.52
4021 9942 6.294342 GGCAAGATGATCTTTGCAGCATATAA 60.294 38.462 21.95 0.00 33.78 0.98
4073 9994 5.913137 AAACGGAAATCCAAGCAATGATA 57.087 34.783 0.00 0.00 35.14 2.15
4084 10005 4.205587 CAAGCAATGATAGAAGGGCTCTT 58.794 43.478 0.00 0.00 35.41 2.85
4156 10077 4.214971 CACAGTTGCTCTTAAAGTGCTCAT 59.785 41.667 0.00 0.00 35.86 2.90
4158 10079 4.214971 CAGTTGCTCTTAAAGTGCTCATGT 59.785 41.667 0.00 0.00 35.86 3.21
4166 10087 7.226325 GCTCTTAAAGTGCTCATGTATGATTCT 59.774 37.037 0.00 0.00 36.02 2.40
4238 10159 6.426937 CCATAAATGATAGGGTAGTTGTTCCG 59.573 42.308 0.00 0.00 0.00 4.30
4282 10203 9.719355 TTAGAATAGAGTTGCACATTGTTTAGA 57.281 29.630 0.00 0.00 0.00 2.10
4291 10212 6.389830 TGCACATTGTTTAGAGACATTTGT 57.610 33.333 0.00 0.00 30.79 2.83
4298 10219 6.774354 TGTTTAGAGACATTTGTACGGAAC 57.226 37.500 0.00 0.00 0.00 3.62
4346 10271 0.966920 CCCTCCGTGTGTTAGTGAGT 59.033 55.000 0.00 0.00 0.00 3.41
4353 10278 3.304257 CCGTGTGTTAGTGAGTTAGTCGT 60.304 47.826 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 0.111639 TAGGGTGTGTTTGGCCTTCC 59.888 55.000 3.32 0.00 0.00 3.46
104 105 8.791355 AAAAACAAATATCTGTTGGTACGTTC 57.209 30.769 0.00 0.00 39.47 3.95
177 197 3.305608 GGGAGTGCTTTCCAGATTTGTTG 60.306 47.826 8.92 0.00 39.09 3.33
257 277 1.332195 CTCCCATATGCTGTCGGAGA 58.668 55.000 16.03 0.00 42.33 3.71
311 331 2.731976 GCTAGGAGGAATAATGCGTTCG 59.268 50.000 0.00 0.00 0.00 3.95
319 339 5.547666 TGAATATGGCTGCTAGGAGGAATAA 59.452 40.000 13.67 0.00 0.00 1.40
325 345 4.348863 AACTGAATATGGCTGCTAGGAG 57.651 45.455 6.94 6.94 0.00 3.69
334 354 4.217118 CCTTCATGGCTAACTGAATATGGC 59.783 45.833 0.00 0.00 31.39 4.40
337 357 4.751028 GCCCCTTCATGGCTAACTGAATAT 60.751 45.833 0.00 0.00 45.70 1.28
368 388 6.237861 GCATTACTTCTCGACCATTACTTGTC 60.238 42.308 0.00 0.00 0.00 3.18
380 400 7.174253 ACCTTATTGTTTTGCATTACTTCTCGA 59.826 33.333 0.00 0.00 0.00 4.04
393 413 5.406175 CCTTGATGCACACCTTATTGTTTTG 59.594 40.000 0.00 0.00 0.00 2.44
394 414 5.070313 ACCTTGATGCACACCTTATTGTTTT 59.930 36.000 0.00 0.00 0.00 2.43
395 415 4.588528 ACCTTGATGCACACCTTATTGTTT 59.411 37.500 0.00 0.00 0.00 2.83
396 416 4.151883 ACCTTGATGCACACCTTATTGTT 58.848 39.130 0.00 0.00 0.00 2.83
397 417 3.758554 GACCTTGATGCACACCTTATTGT 59.241 43.478 0.00 0.00 0.00 2.71
398 418 3.181507 CGACCTTGATGCACACCTTATTG 60.182 47.826 0.00 0.00 0.00 1.90
399 419 3.009723 CGACCTTGATGCACACCTTATT 58.990 45.455 0.00 0.00 0.00 1.40
400 420 2.632377 CGACCTTGATGCACACCTTAT 58.368 47.619 0.00 0.00 0.00 1.73
401 421 1.943968 GCGACCTTGATGCACACCTTA 60.944 52.381 0.00 0.00 0.00 2.69
405 425 0.950555 TGAGCGACCTTGATGCACAC 60.951 55.000 0.00 0.00 0.00 3.82
406 426 0.036105 ATGAGCGACCTTGATGCACA 60.036 50.000 0.00 0.00 33.90 4.57
407 427 1.089920 AATGAGCGACCTTGATGCAC 58.910 50.000 0.00 0.00 0.00 4.57
408 428 1.089112 CAATGAGCGACCTTGATGCA 58.911 50.000 0.00 0.00 0.00 3.96
410 430 1.019673 CCCAATGAGCGACCTTGATG 58.980 55.000 0.00 0.00 0.00 3.07
411 431 0.620556 ACCCAATGAGCGACCTTGAT 59.379 50.000 0.00 0.00 0.00 2.57
412 432 0.321564 CACCCAATGAGCGACCTTGA 60.322 55.000 0.00 0.00 0.00 3.02
413 433 0.606401 ACACCCAATGAGCGACCTTG 60.606 55.000 0.00 0.00 0.00 3.61
414 434 0.606401 CACACCCAATGAGCGACCTT 60.606 55.000 0.00 0.00 0.00 3.50
415 435 1.003355 CACACCCAATGAGCGACCT 60.003 57.895 0.00 0.00 0.00 3.85
417 437 1.298859 GGACACACCCAATGAGCGAC 61.299 60.000 0.00 0.00 0.00 5.19
418 438 1.003839 GGACACACCCAATGAGCGA 60.004 57.895 0.00 0.00 0.00 4.93
419 439 1.302431 TGGACACACCCAATGAGCG 60.302 57.895 0.00 0.00 38.00 5.03
420 440 1.577328 CGTGGACACACCCAATGAGC 61.577 60.000 3.12 0.00 44.86 4.26
421 441 0.250295 ACGTGGACACACCCAATGAG 60.250 55.000 3.12 0.00 44.86 2.90
422 442 0.181587 AACGTGGACACACCCAATGA 59.818 50.000 3.12 0.00 44.86 2.57
424 444 1.695242 TCTAACGTGGACACACCCAAT 59.305 47.619 3.12 0.00 44.86 3.16
425 445 1.121378 TCTAACGTGGACACACCCAA 58.879 50.000 3.12 0.00 44.86 4.12
426 446 0.390124 GTCTAACGTGGACACACCCA 59.610 55.000 14.47 0.00 44.86 4.51
427 447 0.677842 AGTCTAACGTGGACACACCC 59.322 55.000 19.41 0.00 44.86 4.61
428 448 2.670509 GCTAGTCTAACGTGGACACACC 60.671 54.545 19.41 5.80 44.86 4.16
429 449 2.228343 AGCTAGTCTAACGTGGACACAC 59.772 50.000 19.41 10.48 44.23 3.82
430 450 2.511659 AGCTAGTCTAACGTGGACACA 58.488 47.619 19.41 9.22 36.29 3.72
432 452 3.276857 CCTAGCTAGTCTAACGTGGACA 58.723 50.000 19.31 8.42 36.29 4.02
433 453 2.617774 CCCTAGCTAGTCTAACGTGGAC 59.382 54.545 19.31 12.27 0.00 4.02
436 456 3.276857 TGTCCCTAGCTAGTCTAACGTG 58.723 50.000 19.31 1.49 0.00 4.49
438 458 4.978083 TTTGTCCCTAGCTAGTCTAACG 57.022 45.455 19.31 2.92 0.00 3.18
439 459 5.575995 CGTTTTTGTCCCTAGCTAGTCTAAC 59.424 44.000 19.31 11.42 0.00 2.34
440 460 5.717119 CGTTTTTGTCCCTAGCTAGTCTAA 58.283 41.667 19.31 9.52 0.00 2.10
444 464 2.302157 AGCGTTTTTGTCCCTAGCTAGT 59.698 45.455 19.31 0.00 0.00 2.57
447 467 1.523758 CAGCGTTTTTGTCCCTAGCT 58.476 50.000 0.00 0.00 0.00 3.32
448 468 0.109735 GCAGCGTTTTTGTCCCTAGC 60.110 55.000 0.00 0.00 0.00 3.42
449 469 0.521735 GGCAGCGTTTTTGTCCCTAG 59.478 55.000 0.00 0.00 0.00 3.02
451 471 2.551912 CGGCAGCGTTTTTGTCCCT 61.552 57.895 0.00 0.00 0.00 4.20
452 472 2.050442 CGGCAGCGTTTTTGTCCC 60.050 61.111 0.00 0.00 0.00 4.46
453 473 2.050442 CCGGCAGCGTTTTTGTCC 60.050 61.111 0.00 0.00 0.00 4.02
454 474 2.729491 GCCGGCAGCGTTTTTGTC 60.729 61.111 24.80 0.00 0.00 3.18
463 483 3.737172 AATGTTCGTGCCGGCAGC 61.737 61.111 33.73 23.13 44.14 5.25
464 484 2.176546 CAATGTTCGTGCCGGCAG 59.823 61.111 33.73 23.58 0.00 4.85
465 485 4.036804 GCAATGTTCGTGCCGGCA 62.037 61.111 29.03 29.03 35.91 5.69
466 486 1.987704 TATGCAATGTTCGTGCCGGC 61.988 55.000 22.73 22.73 41.49 6.13
467 487 0.449786 TTATGCAATGTTCGTGCCGG 59.550 50.000 0.00 0.00 41.49 6.13
468 488 2.254918 TTTATGCAATGTTCGTGCCG 57.745 45.000 0.00 0.00 41.49 5.69
469 489 2.859538 CCATTTATGCAATGTTCGTGCC 59.140 45.455 0.00 0.00 40.87 5.01
470 490 2.282290 GCCATTTATGCAATGTTCGTGC 59.718 45.455 0.00 0.00 40.87 5.34
471 491 2.531103 CGCCATTTATGCAATGTTCGTG 59.469 45.455 0.00 0.00 40.87 4.35
472 492 2.479389 CCGCCATTTATGCAATGTTCGT 60.479 45.455 0.00 0.00 40.87 3.85
476 496 0.104671 GGCCGCCATTTATGCAATGT 59.895 50.000 3.91 0.00 40.87 2.71
477 497 0.104487 TGGCCGCCATTTATGCAATG 59.896 50.000 8.43 0.00 41.99 2.82
479 499 0.829333 ATTGGCCGCCATTTATGCAA 59.171 45.000 14.30 0.00 31.53 4.08
480 500 0.388659 GATTGGCCGCCATTTATGCA 59.611 50.000 14.30 0.00 31.53 3.96
481 501 0.664166 CGATTGGCCGCCATTTATGC 60.664 55.000 14.30 0.00 31.53 3.14
482 502 3.477504 CGATTGGCCGCCATTTATG 57.522 52.632 14.30 0.68 31.53 1.90
491 511 3.257561 CTCTGTCGCGATTGGCCG 61.258 66.667 14.06 0.00 38.94 6.13
492 512 3.567797 GCTCTGTCGCGATTGGCC 61.568 66.667 14.06 0.00 38.94 5.36
494 514 0.095935 CAAAGCTCTGTCGCGATTGG 59.904 55.000 14.06 5.80 32.03 3.16
496 516 1.790387 GCAAAGCTCTGTCGCGATT 59.210 52.632 14.06 0.00 34.40 3.34
497 517 3.479370 GCAAAGCTCTGTCGCGAT 58.521 55.556 14.06 0.00 34.40 4.58
500 520 4.783841 CGCGCAAAGCTCTGTCGC 62.784 66.667 15.75 15.75 45.59 5.19
501 521 4.139420 CCGCGCAAAGCTCTGTCG 62.139 66.667 8.75 0.00 45.59 4.35
503 523 2.740055 CTCCGCGCAAAGCTCTGT 60.740 61.111 8.75 0.00 45.59 3.41
504 524 4.157958 GCTCCGCGCAAAGCTCTG 62.158 66.667 20.39 0.00 45.59 3.35
517 537 0.251341 ACCACACCAGGAATTGCTCC 60.251 55.000 0.00 0.00 45.81 4.70
518 538 0.883833 CACCACACCAGGAATTGCTC 59.116 55.000 0.00 0.00 0.00 4.26
519 539 1.181098 GCACCACACCAGGAATTGCT 61.181 55.000 0.00 0.00 0.00 3.91
520 540 1.290009 GCACCACACCAGGAATTGC 59.710 57.895 0.00 0.00 0.00 3.56
521 541 1.172180 ACGCACCACACCAGGAATTG 61.172 55.000 0.00 0.00 0.00 2.32
523 543 1.600636 CACGCACCACACCAGGAAT 60.601 57.895 0.00 0.00 0.00 3.01
525 545 4.248842 CCACGCACCACACCAGGA 62.249 66.667 0.00 0.00 0.00 3.86
531 551 4.497984 AACTGGCCACGCACCACA 62.498 61.111 0.00 0.00 32.49 4.17
532 552 3.964875 CAACTGGCCACGCACCAC 61.965 66.667 0.00 0.00 32.49 4.16
534 554 4.947147 TCCAACTGGCCACGCACC 62.947 66.667 0.00 0.00 34.44 5.01
535 555 2.904866 TTCCAACTGGCCACGCAC 60.905 61.111 0.00 0.00 34.44 5.34
537 557 3.365265 CCTTCCAACTGGCCACGC 61.365 66.667 0.00 0.00 34.44 5.34
538 558 3.365265 GCCTTCCAACTGGCCACG 61.365 66.667 0.00 0.00 43.11 4.94
542 562 3.741476 CAGCGCCTTCCAACTGGC 61.741 66.667 2.29 0.00 45.25 4.85
544 564 1.856265 GAACCAGCGCCTTCCAACTG 61.856 60.000 2.29 0.00 0.00 3.16
546 566 2.954611 GAACCAGCGCCTTCCAAC 59.045 61.111 2.29 0.00 0.00 3.77
608 628 2.758770 TACTGAACTCGGGTGCGCAC 62.759 60.000 32.15 32.15 0.00 5.34
609 629 2.486636 CTACTGAACTCGGGTGCGCA 62.487 60.000 5.66 5.66 0.00 6.09
611 631 1.805945 GCTACTGAACTCGGGTGCG 60.806 63.158 0.00 0.00 0.00 5.34
612 632 0.815734 TAGCTACTGAACTCGGGTGC 59.184 55.000 0.00 0.00 0.00 5.01
613 633 1.816835 TGTAGCTACTGAACTCGGGTG 59.183 52.381 23.84 0.00 0.00 4.61
614 634 2.093106 CTGTAGCTACTGAACTCGGGT 58.907 52.381 23.84 0.00 0.00 5.28
615 635 1.405821 CCTGTAGCTACTGAACTCGGG 59.594 57.143 27.00 10.01 0.00 5.14
617 637 2.159366 CCACCTGTAGCTACTGAACTCG 60.159 54.545 27.00 14.82 0.00 4.18
619 639 2.826725 GACCACCTGTAGCTACTGAACT 59.173 50.000 27.00 10.06 0.00 3.01
620 640 2.094130 GGACCACCTGTAGCTACTGAAC 60.094 54.545 27.00 13.14 0.00 3.18
621 641 2.176889 GGACCACCTGTAGCTACTGAA 58.823 52.381 27.00 7.22 0.00 3.02
622 642 1.618888 GGGACCACCTGTAGCTACTGA 60.619 57.143 27.00 7.92 35.85 3.41
623 643 0.824759 GGGACCACCTGTAGCTACTG 59.175 60.000 23.84 22.12 35.85 2.74
624 644 3.301746 GGGACCACCTGTAGCTACT 57.698 57.895 23.84 2.99 35.85 2.57
634 654 1.961394 GGAGAAAAACAAGGGACCACC 59.039 52.381 0.00 0.00 40.67 4.61
638 658 1.244816 CCCGGAGAAAAACAAGGGAC 58.755 55.000 0.73 0.00 41.26 4.46
639 659 0.538746 GCCCGGAGAAAAACAAGGGA 60.539 55.000 0.73 0.00 41.26 4.20
640 660 1.532604 GGCCCGGAGAAAAACAAGGG 61.533 60.000 0.73 0.00 41.65 3.95
641 661 1.532604 GGGCCCGGAGAAAAACAAGG 61.533 60.000 5.69 0.00 0.00 3.61
643 663 0.178947 ATGGGCCCGGAGAAAAACAA 60.179 50.000 19.37 0.00 0.00 2.83
644 664 0.178947 AATGGGCCCGGAGAAAAACA 60.179 50.000 19.37 0.00 0.00 2.83
645 665 0.246360 CAATGGGCCCGGAGAAAAAC 59.754 55.000 19.37 0.00 0.00 2.43
646 666 0.178947 ACAATGGGCCCGGAGAAAAA 60.179 50.000 19.37 0.00 0.00 1.94
647 667 0.610785 GACAATGGGCCCGGAGAAAA 60.611 55.000 19.37 0.00 0.00 2.29
648 668 1.001393 GACAATGGGCCCGGAGAAA 60.001 57.895 19.37 0.00 0.00 2.52
649 669 1.784301 TTGACAATGGGCCCGGAGAA 61.784 55.000 19.37 0.00 0.00 2.87
650 670 1.570857 ATTGACAATGGGCCCGGAGA 61.571 55.000 19.37 0.00 0.00 3.71
651 671 0.684153 AATTGACAATGGGCCCGGAG 60.684 55.000 19.37 11.69 0.00 4.63
652 672 0.252012 AAATTGACAATGGGCCCGGA 60.252 50.000 19.37 0.00 0.00 5.14
653 673 0.175531 GAAATTGACAATGGGCCCGG 59.824 55.000 19.37 12.13 0.00 5.73
655 675 3.244526 ACAAAGAAATTGACAATGGGCCC 60.245 43.478 17.59 17.59 41.85 5.80
656 676 3.747529 CACAAAGAAATTGACAATGGGCC 59.252 43.478 0.34 0.00 41.85 5.80
657 677 4.211794 CACACAAAGAAATTGACAATGGGC 59.788 41.667 0.34 0.00 41.85 5.36
659 679 6.907206 AACACACAAAGAAATTGACAATGG 57.093 33.333 0.34 0.00 41.85 3.16
660 680 6.683708 GCAAACACACAAAGAAATTGACAATG 59.316 34.615 0.34 0.00 41.85 2.82
661 681 6.594937 AGCAAACACACAAAGAAATTGACAAT 59.405 30.769 0.00 0.00 41.85 2.71
662 682 5.931146 AGCAAACACACAAAGAAATTGACAA 59.069 32.000 0.00 0.00 41.85 3.18
663 683 5.477510 AGCAAACACACAAAGAAATTGACA 58.522 33.333 0.00 0.00 41.85 3.58
664 684 6.407475 AAGCAAACACACAAAGAAATTGAC 57.593 33.333 0.00 0.00 41.85 3.18
665 685 6.426328 ACAAAGCAAACACACAAAGAAATTGA 59.574 30.769 0.00 0.00 41.85 2.57
666 686 6.601264 ACAAAGCAAACACACAAAGAAATTG 58.399 32.000 0.00 0.00 44.95 2.32
667 687 6.799926 ACAAAGCAAACACACAAAGAAATT 57.200 29.167 0.00 0.00 0.00 1.82
668 688 6.204495 ACAACAAAGCAAACACACAAAGAAAT 59.796 30.769 0.00 0.00 0.00 2.17
669 689 5.525378 ACAACAAAGCAAACACACAAAGAAA 59.475 32.000 0.00 0.00 0.00 2.52
671 691 4.447054 CACAACAAAGCAAACACACAAAGA 59.553 37.500 0.00 0.00 0.00 2.52
672 692 4.700332 CACAACAAAGCAAACACACAAAG 58.300 39.130 0.00 0.00 0.00 2.77
673 693 3.059325 GCACAACAAAGCAAACACACAAA 60.059 39.130 0.00 0.00 0.00 2.83
674 694 2.478134 GCACAACAAAGCAAACACACAA 59.522 40.909 0.00 0.00 0.00 3.33
675 695 2.064762 GCACAACAAAGCAAACACACA 58.935 42.857 0.00 0.00 0.00 3.72
676 696 2.336667 AGCACAACAAAGCAAACACAC 58.663 42.857 0.00 0.00 0.00 3.82
677 697 2.735663 CAAGCACAACAAAGCAAACACA 59.264 40.909 0.00 0.00 0.00 3.72
679 699 3.037431 ACAAGCACAACAAAGCAAACA 57.963 38.095 0.00 0.00 0.00 2.83
680 700 5.717038 ATTACAAGCACAACAAAGCAAAC 57.283 34.783 0.00 0.00 0.00 2.93
682 702 8.973378 GTTAATATTACAAGCACAACAAAGCAA 58.027 29.630 0.00 0.00 0.00 3.91
683 703 7.596995 GGTTAATATTACAAGCACAACAAAGCA 59.403 33.333 0.00 0.00 0.00 3.91
684 704 7.812669 AGGTTAATATTACAAGCACAACAAAGC 59.187 33.333 0.00 0.00 0.00 3.51
686 706 8.018520 CGAGGTTAATATTACAAGCACAACAAA 58.981 33.333 0.00 0.00 0.00 2.83
687 707 7.388224 TCGAGGTTAATATTACAAGCACAACAA 59.612 33.333 0.00 0.00 0.00 2.83
688 708 6.874664 TCGAGGTTAATATTACAAGCACAACA 59.125 34.615 0.00 0.00 0.00 3.33
689 709 7.178074 GTCGAGGTTAATATTACAAGCACAAC 58.822 38.462 0.00 0.00 0.00 3.32
690 710 6.314400 GGTCGAGGTTAATATTACAAGCACAA 59.686 38.462 0.00 0.00 0.00 3.33
691 711 5.813672 GGTCGAGGTTAATATTACAAGCACA 59.186 40.000 0.00 0.00 0.00 4.57
692 712 6.047231 AGGTCGAGGTTAATATTACAAGCAC 58.953 40.000 0.00 0.00 0.00 4.40
693 713 6.229936 AGGTCGAGGTTAATATTACAAGCA 57.770 37.500 0.00 0.00 0.00 3.91
694 714 5.401674 CGAGGTCGAGGTTAATATTACAAGC 59.598 44.000 0.00 0.00 43.02 4.01
697 717 5.009010 GGACGAGGTCGAGGTTAATATTACA 59.991 44.000 6.35 0.00 43.02 2.41
698 718 5.240403 AGGACGAGGTCGAGGTTAATATTAC 59.760 44.000 6.35 0.00 43.02 1.89
699 719 5.380043 AGGACGAGGTCGAGGTTAATATTA 58.620 41.667 6.35 0.00 43.02 0.98
701 721 3.819902 GAGGACGAGGTCGAGGTTAATAT 59.180 47.826 6.35 0.00 43.02 1.28
702 722 3.209410 GAGGACGAGGTCGAGGTTAATA 58.791 50.000 6.35 0.00 43.02 0.98
705 725 0.325933 TGAGGACGAGGTCGAGGTTA 59.674 55.000 6.35 0.00 43.02 2.85
706 726 0.961358 CTGAGGACGAGGTCGAGGTT 60.961 60.000 6.35 0.00 43.02 3.50
707 727 1.377463 CTGAGGACGAGGTCGAGGT 60.377 63.158 6.35 0.00 43.02 3.85
708 728 2.766400 GCTGAGGACGAGGTCGAGG 61.766 68.421 6.35 0.00 43.02 4.63
709 729 2.795297 GCTGAGGACGAGGTCGAG 59.205 66.667 6.35 0.00 43.02 4.04
710 730 3.125573 CGCTGAGGACGAGGTCGA 61.126 66.667 6.35 0.00 43.02 4.20
713 733 3.374402 CACCGCTGAGGACGAGGT 61.374 66.667 3.87 0.00 45.00 3.85
714 734 3.343788 GACACCGCTGAGGACGAGG 62.344 68.421 3.87 0.00 45.00 4.63
715 735 2.179517 GACACCGCTGAGGACGAG 59.820 66.667 3.87 0.00 45.00 4.18
716 736 2.596338 TGACACCGCTGAGGACGA 60.596 61.111 3.87 0.00 45.00 4.20
717 737 2.126307 CTGACACCGCTGAGGACG 60.126 66.667 3.87 0.00 45.00 4.79
718 738 2.433318 GCTGACACCGCTGAGGAC 60.433 66.667 3.87 0.00 45.00 3.85
719 739 4.056125 CGCTGACACCGCTGAGGA 62.056 66.667 3.87 0.00 45.00 3.71
728 748 3.116531 GGTAACCGGCGCTGACAC 61.117 66.667 20.25 11.83 0.00 3.67
729 749 4.728102 CGGTAACCGGCGCTGACA 62.728 66.667 20.25 0.00 44.15 3.58
739 759 2.554272 CACACAAGCGCGGTAACC 59.446 61.111 12.91 0.00 0.00 2.85
740 760 2.127383 GCACACAAGCGCGGTAAC 60.127 61.111 12.91 0.00 0.00 2.50
748 768 2.352686 CTGCACACGCACACAAGC 60.353 61.111 0.00 0.00 45.36 4.01
749 769 2.352686 GCTGCACACGCACACAAG 60.353 61.111 0.00 0.00 45.36 3.16
750 770 3.110868 CTGCTGCACACGCACACAA 62.111 57.895 0.00 0.00 45.36 3.33
751 771 3.575400 CTGCTGCACACGCACACA 61.575 61.111 0.00 0.00 45.36 3.72
752 772 3.576356 ACTGCTGCACACGCACAC 61.576 61.111 0.00 0.00 45.36 3.82
754 774 4.969604 GCACTGCTGCACACGCAC 62.970 66.667 0.00 0.00 45.36 5.34
759 779 3.279116 GAACCGCACTGCTGCACA 61.279 61.111 0.00 0.00 44.50 4.57
761 781 3.279116 GTGAACCGCACTGCTGCA 61.279 61.111 0.88 0.88 44.50 4.41
772 792 2.032071 CCCACGGGTCAGTGAACC 59.968 66.667 17.99 17.99 44.43 3.62
774 794 3.948719 GCCCCACGGGTCAGTGAA 61.949 66.667 0.41 0.00 46.51 3.18
804 824 1.212688 TGACATCACATCCCACCCATC 59.787 52.381 0.00 0.00 0.00 3.51
819 839 2.176889 AGGCCTACTGTACGTTGACAT 58.823 47.619 1.29 0.00 0.00 3.06
904 924 2.103373 GGATCAAGGAGAAAAAGGGGC 58.897 52.381 0.00 0.00 0.00 5.80
979 999 2.365105 TGACGGGAGGGGGATGTC 60.365 66.667 0.00 0.00 0.00 3.06
1151 1176 2.167861 GGCGGATCTTGTCGTGCTC 61.168 63.158 0.00 0.00 0.00 4.26
1233 1291 3.868077 CGGCAGAAACAGAGGAGAATAAG 59.132 47.826 0.00 0.00 0.00 1.73
1460 1519 3.002759 GCGGGAACTATCTTCATTCTTGC 59.997 47.826 0.00 0.00 0.00 4.01
1493 1552 9.730705 TCTGATGAACTATCTTCATTCTTGTTT 57.269 29.630 0.00 0.00 39.08 2.83
1535 1594 5.716703 GGAGAAGGAATCCCATTTTCTCAAA 59.283 40.000 22.41 0.00 40.39 2.69
1732 3618 9.185192 GAGACAAACAACATTAGAAAATTCCAG 57.815 33.333 0.00 0.00 0.00 3.86
1979 4219 6.899393 TCTTTTACCTTCATGCTGACAAAT 57.101 33.333 0.00 0.00 0.00 2.32
2048 4288 8.737168 TTATATGAACTTTGCAGCAGTTATCT 57.263 30.769 12.13 4.69 34.49 1.98
2142 4382 8.693504 CATGCACATGTTAGAAAGTTAAAACAG 58.306 33.333 0.00 0.00 35.48 3.16
2384 4636 2.686915 CTGTGAAATCCCATTCTCCTGC 59.313 50.000 0.00 0.00 0.00 4.85
2431 4693 6.726764 ACTCCTAATGTAGAGAAGGAAACTGT 59.273 38.462 0.00 0.00 42.68 3.55
2461 4723 6.645790 AACAGAGAGAAACAATTGCAGAAT 57.354 33.333 5.05 0.00 0.00 2.40
2559 4829 5.312079 AGACATAGATAAAGCCCTTGCATC 58.688 41.667 0.00 0.00 41.13 3.91
2642 4971 0.319083 ACCACGCCGTTGAAGTATCA 59.681 50.000 0.00 0.00 0.00 2.15
2643 4972 2.282701 TACCACGCCGTTGAAGTATC 57.717 50.000 0.00 0.00 0.00 2.24
2644 4973 2.973694 ATACCACGCCGTTGAAGTAT 57.026 45.000 0.00 0.00 0.00 2.12
2645 4974 3.633525 AGATATACCACGCCGTTGAAGTA 59.366 43.478 0.00 0.00 0.00 2.24
2646 4975 2.429610 AGATATACCACGCCGTTGAAGT 59.570 45.455 0.00 0.00 0.00 3.01
2647 4976 3.050619 GAGATATACCACGCCGTTGAAG 58.949 50.000 0.00 0.00 0.00 3.02
2648 4977 2.223876 GGAGATATACCACGCCGTTGAA 60.224 50.000 0.00 0.00 0.00 2.69
2821 5151 9.760660 CAGCAAAACAATTATAAGACTACAGTC 57.239 33.333 0.91 0.91 45.08 3.51
3297 5836 6.749923 ATTTTAGCCACAGAGAGACATTTC 57.250 37.500 0.00 0.00 0.00 2.17
3322 5861 2.084546 GACTTGAGGGGAAAACCGATG 58.915 52.381 0.00 0.00 41.60 3.84
3386 5925 2.417243 GGCAAGACATTTCAATTCCGGG 60.417 50.000 0.00 0.00 0.00 5.73
3388 5927 2.095263 ACGGCAAGACATTTCAATTCCG 60.095 45.455 0.00 0.00 40.09 4.30
3649 7103 1.559149 GGCAAAATTGTGCGCACCAG 61.559 55.000 35.72 19.57 45.91 4.00
3743 8450 4.092675 GCTACTCAGAAAAGAGCATGACAC 59.907 45.833 0.00 0.00 39.26 3.67
3814 8521 4.696877 GGGCCATTGAAGATTTTTCCTTTG 59.303 41.667 4.39 0.00 0.00 2.77
3830 8537 0.907704 TCACCACGTCTAGGGCCATT 60.908 55.000 6.18 0.00 0.00 3.16
3835 8542 0.815734 ATTCGTCACCACGTCTAGGG 59.184 55.000 0.00 0.00 46.76 3.53
3839 8546 3.428999 CCAGATTATTCGTCACCACGTCT 60.429 47.826 0.00 0.00 46.76 4.18
3904 8611 1.228154 GCGACCCAACCCTGAGTTT 60.228 57.895 0.00 0.00 36.18 2.66
3926 8633 3.181507 CGTAGTAAGAACCATCGACCGAA 60.182 47.826 0.00 0.00 0.00 4.30
3945 8652 1.484653 AGCCTTACCATCATGTGCGTA 59.515 47.619 0.00 0.00 0.00 4.42
3959 8666 0.913934 TCATCCCTGTGCCAGCCTTA 60.914 55.000 0.00 0.00 0.00 2.69
4010 8717 5.744171 TGGAAGAGTCTTTTATATGCTGCA 58.256 37.500 4.13 4.13 0.00 4.41
4021 9942 5.962433 CATCATTGCAATGGAAGAGTCTTT 58.038 37.500 33.22 8.08 37.03 2.52
4050 9971 4.599047 TCATTGCTTGGATTTCCGTTTT 57.401 36.364 0.00 0.00 39.43 2.43
4150 10071 4.406649 TGTCCAGAGAATCATACATGAGCA 59.593 41.667 0.00 0.00 40.64 4.26
4156 10077 4.279420 CCGATCTGTCCAGAGAATCATACA 59.721 45.833 3.10 0.00 41.33 2.29
4158 10079 3.256879 GCCGATCTGTCCAGAGAATCATA 59.743 47.826 3.10 0.00 41.33 2.15
4166 10087 1.620323 CCATATGCCGATCTGTCCAGA 59.380 52.381 0.00 0.00 42.37 3.86
4282 10203 1.338389 CCCCGTTCCGTACAAATGTCT 60.338 52.381 0.00 0.00 0.00 3.41
4291 10212 0.396139 AGTGCTATCCCCGTTCCGTA 60.396 55.000 0.00 0.00 0.00 4.02
4298 10219 2.109799 CCAGCAGTGCTATCCCCG 59.890 66.667 19.26 3.91 36.40 5.73
4324 10249 1.156803 ACTAACACACGGAGGGGGA 59.843 57.895 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.