Multiple sequence alignment - TraesCS5A01G190300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G190300 chr5A 100.000 3245 0 0 1 3245 394752631 394755875 0.000000e+00 5993.0
1 TraesCS5A01G190300 chr5D 92.193 3023 152 32 238 3245 302974347 302971394 0.000000e+00 4198.0
2 TraesCS5A01G190300 chr5B 90.004 2711 113 50 559 3245 347989681 347987105 0.000000e+00 3360.0
3 TraesCS5A01G190300 chr5B 93.421 76 3 1 238 311 347991456 347991381 9.520000e-21 111.0
4 TraesCS5A01G190300 chr4A 97.510 241 6 0 1 241 97263923 97264163 2.330000e-111 412.0
5 TraesCS5A01G190300 chr1A 96.761 247 7 1 1 246 102160877 102160631 8.380000e-111 411.0
6 TraesCS5A01G190300 chr3A 97.468 237 6 0 1 237 638935009 638935245 3.900000e-109 405.0
7 TraesCS5A01G190300 chr3A 97.468 237 6 0 1 237 658886315 658886551 3.900000e-109 405.0
8 TraesCS5A01G190300 chr3A 96.694 242 6 2 1 242 323097952 323097713 5.040000e-108 401.0
9 TraesCS5A01G190300 chr3A 97.046 237 7 0 1 237 456751294 456751530 1.810000e-107 399.0
10 TraesCS5A01G190300 chr7A 97.059 238 6 1 1 237 671309425 671309662 1.810000e-107 399.0
11 TraesCS5A01G190300 chr7A 97.046 237 7 0 1 237 720917454 720917218 1.810000e-107 399.0
12 TraesCS5A01G190300 chr6B 95.935 246 10 0 1 246 642911395 642911640 1.810000e-107 399.0
13 TraesCS5A01G190300 chr6B 74.254 268 44 17 1815 2059 580241368 580241103 4.460000e-14 89.8
14 TraesCS5A01G190300 chr6D 75.000 264 46 14 1815 2059 388322444 388322182 1.590000e-18 104.0
15 TraesCS5A01G190300 chr6A 74.254 268 44 17 1815 2059 534949313 534949048 4.460000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G190300 chr5A 394752631 394755875 3244 False 5993.0 5993 100.0000 1 3245 1 chr5A.!!$F1 3244
1 TraesCS5A01G190300 chr5D 302971394 302974347 2953 True 4198.0 4198 92.1930 238 3245 1 chr5D.!!$R1 3007
2 TraesCS5A01G190300 chr5B 347987105 347991456 4351 True 1735.5 3360 91.7125 238 3245 2 chr5B.!!$R1 3007

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.037697 ACCATCGCGTGCAAGTTCTA 60.038 50.0 5.77 0.0 0.0 2.10 F
553 2052 0.387929 AACGTCGGCAAAGAGTCTGA 59.612 50.0 0.00 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1746 3254 0.035458 CCGTCTTCTTGGTCTGGCTT 59.965 55.0 0.00 0.0 0.00 4.35 R
2394 3911 0.942884 GCGTCGGACGACCTTTCTTT 60.943 55.0 32.48 0.0 46.05 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.085876 GCCAAAGGCTTCTCTGCA 57.914 55.556 0.00 0.00 46.69 4.41
37 38 1.881602 GCCAAAGGCTTCTCTGCAG 59.118 57.895 7.63 7.63 46.69 4.41
38 39 0.607489 GCCAAAGGCTTCTCTGCAGA 60.607 55.000 17.19 17.19 46.69 4.26
39 40 1.954258 GCCAAAGGCTTCTCTGCAGAT 60.954 52.381 18.63 0.00 46.69 2.90
40 41 2.015587 CCAAAGGCTTCTCTGCAGATC 58.984 52.381 18.63 6.86 34.04 2.75
41 42 2.355920 CCAAAGGCTTCTCTGCAGATCT 60.356 50.000 18.63 7.30 34.04 2.75
42 43 3.118482 CCAAAGGCTTCTCTGCAGATCTA 60.118 47.826 18.63 2.95 34.04 1.98
43 44 3.817709 AAGGCTTCTCTGCAGATCTAC 57.182 47.619 18.63 7.61 34.04 2.59
44 45 2.744760 AGGCTTCTCTGCAGATCTACA 58.255 47.619 18.63 0.00 34.04 2.74
45 46 3.307506 AGGCTTCTCTGCAGATCTACAT 58.692 45.455 18.63 2.47 34.04 2.29
46 47 3.069872 AGGCTTCTCTGCAGATCTACATG 59.930 47.826 18.63 3.48 34.04 3.21
47 48 2.801679 GCTTCTCTGCAGATCTACATGC 59.198 50.000 18.63 10.92 42.86 4.06
48 49 3.493002 GCTTCTCTGCAGATCTACATGCT 60.493 47.826 18.63 0.00 42.98 3.79
49 50 4.261952 GCTTCTCTGCAGATCTACATGCTA 60.262 45.833 18.63 0.00 42.98 3.49
50 51 4.844998 TCTCTGCAGATCTACATGCTAC 57.155 45.455 18.63 0.00 42.98 3.58
51 52 4.210331 TCTCTGCAGATCTACATGCTACA 58.790 43.478 18.63 0.00 42.98 2.74
52 53 4.277921 TCTCTGCAGATCTACATGCTACAG 59.722 45.833 18.63 0.00 42.98 2.74
53 54 3.058450 CTGCAGATCTACATGCTACAGC 58.942 50.000 8.42 0.00 42.98 4.40
54 55 2.057316 GCAGATCTACATGCTACAGCG 58.943 52.381 0.00 0.00 45.83 5.18
55 56 2.670479 CAGATCTACATGCTACAGCGG 58.330 52.381 0.00 0.00 45.83 5.52
56 57 2.294512 CAGATCTACATGCTACAGCGGA 59.705 50.000 0.00 0.00 45.83 5.54
57 58 3.056962 CAGATCTACATGCTACAGCGGAT 60.057 47.826 0.00 0.00 45.83 4.18
58 59 2.800881 TCTACATGCTACAGCGGATG 57.199 50.000 0.00 0.00 45.83 3.51
59 60 2.306847 TCTACATGCTACAGCGGATGA 58.693 47.619 0.00 0.68 45.83 2.92
60 61 2.034685 TCTACATGCTACAGCGGATGAC 59.965 50.000 0.00 0.00 45.83 3.06
61 62 0.536724 ACATGCTACAGCGGATGACA 59.463 50.000 0.00 0.00 45.83 3.58
62 63 1.066215 ACATGCTACAGCGGATGACAA 60.066 47.619 0.00 0.00 45.83 3.18
63 64 2.216046 CATGCTACAGCGGATGACAAT 58.784 47.619 0.00 0.00 45.83 2.71
64 65 1.655484 TGCTACAGCGGATGACAATG 58.345 50.000 0.00 0.00 45.83 2.82
65 66 0.940126 GCTACAGCGGATGACAATGG 59.060 55.000 0.00 0.00 0.00 3.16
66 67 1.586422 CTACAGCGGATGACAATGGG 58.414 55.000 0.00 0.00 0.00 4.00
67 68 0.463654 TACAGCGGATGACAATGGGC 60.464 55.000 0.00 0.00 0.00 5.36
68 69 1.452651 CAGCGGATGACAATGGGCT 60.453 57.895 0.00 0.00 0.00 5.19
69 70 1.153086 AGCGGATGACAATGGGCTC 60.153 57.895 0.00 0.00 0.00 4.70
70 71 1.153086 GCGGATGACAATGGGCTCT 60.153 57.895 0.00 0.00 0.00 4.09
71 72 1.442526 GCGGATGACAATGGGCTCTG 61.443 60.000 0.00 0.00 0.00 3.35
72 73 0.816825 CGGATGACAATGGGCTCTGG 60.817 60.000 0.00 0.00 0.00 3.86
73 74 1.105759 GGATGACAATGGGCTCTGGC 61.106 60.000 0.00 0.00 37.82 4.85
83 84 2.431683 GCTCTGGCCACACTGGAA 59.568 61.111 0.00 0.00 40.96 3.53
84 85 1.001641 GCTCTGGCCACACTGGAAT 60.002 57.895 0.00 0.00 40.96 3.01
85 86 1.310933 GCTCTGGCCACACTGGAATG 61.311 60.000 0.00 0.00 40.96 2.67
86 87 1.303561 TCTGGCCACACTGGAATGC 60.304 57.895 0.00 0.00 40.96 3.56
87 88 2.283101 TGGCCACACTGGAATGCC 60.283 61.111 0.00 0.00 40.96 4.40
88 89 2.283101 GGCCACACTGGAATGCCA 60.283 61.111 0.00 0.00 40.96 4.92
89 90 2.639327 GGCCACACTGGAATGCCAC 61.639 63.158 0.00 0.00 40.96 5.01
90 91 1.902918 GCCACACTGGAATGCCACA 60.903 57.895 0.00 0.00 40.96 4.17
91 92 1.252904 GCCACACTGGAATGCCACAT 61.253 55.000 0.00 0.00 40.96 3.21
92 93 1.954733 GCCACACTGGAATGCCACATA 60.955 52.381 0.00 0.00 40.96 2.29
93 94 2.019249 CCACACTGGAATGCCACATAG 58.981 52.381 0.00 0.00 40.96 2.23
94 95 1.402968 CACACTGGAATGCCACATAGC 59.597 52.381 0.00 0.00 39.92 2.97
95 96 1.027357 CACTGGAATGCCACATAGCC 58.973 55.000 0.00 0.00 39.92 3.93
96 97 0.106519 ACTGGAATGCCACATAGCCC 60.107 55.000 0.00 0.00 39.92 5.19
97 98 0.106569 CTGGAATGCCACATAGCCCA 60.107 55.000 0.00 0.00 39.92 5.36
98 99 0.557238 TGGAATGCCACATAGCCCAT 59.443 50.000 0.00 0.00 39.92 4.00
99 100 0.963962 GGAATGCCACATAGCCCATG 59.036 55.000 0.00 0.00 40.78 3.66
100 101 0.963962 GAATGCCACATAGCCCATGG 59.036 55.000 4.14 4.14 39.13 3.66
101 102 0.557238 AATGCCACATAGCCCATGGA 59.443 50.000 15.22 0.00 39.13 3.41
102 103 0.781920 ATGCCACATAGCCCATGGAT 59.218 50.000 15.22 3.69 39.13 3.41
103 104 1.443852 TGCCACATAGCCCATGGATA 58.556 50.000 15.22 6.18 39.13 2.59
104 105 1.994794 TGCCACATAGCCCATGGATAT 59.005 47.619 15.22 8.47 39.13 1.63
110 111 3.942829 CATAGCCCATGGATATGTTCGT 58.057 45.455 15.22 0.00 44.26 3.85
111 112 2.260844 AGCCCATGGATATGTTCGTG 57.739 50.000 15.22 0.00 32.21 4.35
112 113 1.490490 AGCCCATGGATATGTTCGTGT 59.510 47.619 15.22 0.00 32.21 4.49
113 114 2.703536 AGCCCATGGATATGTTCGTGTA 59.296 45.455 15.22 0.00 32.21 2.90
114 115 2.806244 GCCCATGGATATGTTCGTGTAC 59.194 50.000 15.22 0.00 32.21 2.90
115 116 3.742954 GCCCATGGATATGTTCGTGTACA 60.743 47.826 15.22 0.00 32.21 2.90
116 117 4.641396 CCCATGGATATGTTCGTGTACAT 58.359 43.478 15.22 0.00 41.43 2.29
117 118 4.452114 CCCATGGATATGTTCGTGTACATG 59.548 45.833 15.22 8.90 39.06 3.21
118 119 5.296748 CCATGGATATGTTCGTGTACATGA 58.703 41.667 13.87 13.87 39.06 3.07
119 120 5.757808 CCATGGATATGTTCGTGTACATGAA 59.242 40.000 23.57 23.57 39.06 2.57
120 121 6.259829 CCATGGATATGTTCGTGTACATGAAA 59.740 38.462 27.75 19.02 39.06 2.69
121 122 7.041167 CCATGGATATGTTCGTGTACATGAAAT 60.041 37.037 27.75 23.01 39.06 2.17
139 140 6.210396 TGAAATGTGATCGTATATGAACGC 57.790 37.500 8.42 8.42 42.56 4.84
140 141 5.983118 TGAAATGTGATCGTATATGAACGCT 59.017 36.000 14.55 0.00 42.56 5.07
141 142 6.478673 TGAAATGTGATCGTATATGAACGCTT 59.521 34.615 14.55 7.54 42.56 4.68
142 143 5.829233 ATGTGATCGTATATGAACGCTTG 57.171 39.130 14.55 0.00 42.56 4.01
143 144 4.678622 TGTGATCGTATATGAACGCTTGT 58.321 39.130 14.55 0.00 42.56 3.16
144 145 5.823353 TGTGATCGTATATGAACGCTTGTA 58.177 37.500 14.55 0.00 42.56 2.41
145 146 5.684184 TGTGATCGTATATGAACGCTTGTAC 59.316 40.000 14.55 0.00 42.56 2.90
146 147 5.684184 GTGATCGTATATGAACGCTTGTACA 59.316 40.000 8.16 0.00 42.56 2.90
147 148 6.197655 GTGATCGTATATGAACGCTTGTACAA 59.802 38.462 8.28 8.28 42.56 2.41
148 149 6.416750 TGATCGTATATGAACGCTTGTACAAG 59.583 38.462 27.85 27.85 42.56 3.16
149 150 5.643664 TCGTATATGAACGCTTGTACAAGT 58.356 37.500 30.90 15.82 42.56 3.16
150 151 6.094719 TCGTATATGAACGCTTGTACAAGTT 58.905 36.000 30.90 21.49 42.56 2.66
151 152 6.587226 TCGTATATGAACGCTTGTACAAGTTT 59.413 34.615 30.90 24.51 42.56 2.66
152 153 6.676995 CGTATATGAACGCTTGTACAAGTTTG 59.323 38.462 30.90 23.58 40.45 2.93
153 154 6.795098 ATATGAACGCTTGTACAAGTTTGA 57.205 33.333 30.90 20.63 40.45 2.69
154 155 5.689383 ATGAACGCTTGTACAAGTTTGAT 57.311 34.783 30.90 21.66 40.45 2.57
155 156 4.843147 TGAACGCTTGTACAAGTTTGATG 58.157 39.130 30.90 18.16 40.45 3.07
156 157 4.572795 TGAACGCTTGTACAAGTTTGATGA 59.427 37.500 30.90 12.07 40.45 2.92
157 158 4.468095 ACGCTTGTACAAGTTTGATGAC 57.532 40.909 30.90 14.44 40.45 3.06
158 159 3.250040 ACGCTTGTACAAGTTTGATGACC 59.750 43.478 30.90 13.83 40.45 4.02
159 160 3.664276 CGCTTGTACAAGTTTGATGACCG 60.664 47.826 30.90 20.24 40.45 4.79
160 161 3.364964 GCTTGTACAAGTTTGATGACCGG 60.365 47.826 30.90 0.00 40.45 5.28
161 162 3.755112 TGTACAAGTTTGATGACCGGA 57.245 42.857 9.46 0.00 0.00 5.14
162 163 4.074627 TGTACAAGTTTGATGACCGGAA 57.925 40.909 9.46 0.00 0.00 4.30
163 164 4.452825 TGTACAAGTTTGATGACCGGAAA 58.547 39.130 9.46 0.00 0.00 3.13
164 165 3.982576 ACAAGTTTGATGACCGGAAAC 57.017 42.857 9.46 8.16 0.00 2.78
165 166 3.283751 ACAAGTTTGATGACCGGAAACA 58.716 40.909 9.46 5.76 32.96 2.83
166 167 3.888930 ACAAGTTTGATGACCGGAAACAT 59.111 39.130 9.46 10.96 32.96 2.71
167 168 4.229096 CAAGTTTGATGACCGGAAACATG 58.771 43.478 9.46 7.51 32.96 3.21
168 169 3.486383 AGTTTGATGACCGGAAACATGT 58.514 40.909 9.46 0.00 32.96 3.21
169 170 4.647611 AGTTTGATGACCGGAAACATGTA 58.352 39.130 9.46 0.00 32.96 2.29
170 171 5.253330 AGTTTGATGACCGGAAACATGTAT 58.747 37.500 9.46 0.00 32.96 2.29
171 172 5.710099 AGTTTGATGACCGGAAACATGTATT 59.290 36.000 9.46 0.00 32.96 1.89
172 173 6.208599 AGTTTGATGACCGGAAACATGTATTT 59.791 34.615 9.46 0.00 32.96 1.40
173 174 6.582677 TTGATGACCGGAAACATGTATTTT 57.417 33.333 9.46 0.00 0.00 1.82
174 175 7.689446 TTGATGACCGGAAACATGTATTTTA 57.311 32.000 9.46 0.00 0.00 1.52
175 176 7.079182 TGATGACCGGAAACATGTATTTTAC 57.921 36.000 9.46 0.00 0.00 2.01
176 177 6.655425 TGATGACCGGAAACATGTATTTTACA 59.345 34.615 9.46 0.18 43.80 2.41
177 178 6.879276 TGACCGGAAACATGTATTTTACAA 57.121 33.333 9.46 0.00 42.76 2.41
178 179 6.904498 TGACCGGAAACATGTATTTTACAAG 58.096 36.000 9.46 0.00 42.76 3.16
179 180 6.487331 TGACCGGAAACATGTATTTTACAAGT 59.513 34.615 9.46 0.00 41.79 3.16
187 188 7.692908 ACATGTATTTTACAAGTTTGTGCAC 57.307 32.000 10.75 10.75 42.76 4.57
188 189 6.699642 ACATGTATTTTACAAGTTTGTGCACC 59.300 34.615 15.69 0.00 42.76 5.01
189 190 6.208988 TGTATTTTACAAGTTTGTGCACCA 57.791 33.333 15.69 0.00 42.31 4.17
190 191 6.631016 TGTATTTTACAAGTTTGTGCACCAA 58.369 32.000 15.69 6.86 42.31 3.67
191 192 7.097192 TGTATTTTACAAGTTTGTGCACCAAA 58.903 30.769 15.69 11.92 42.31 3.28
192 193 7.063544 TGTATTTTACAAGTTTGTGCACCAAAC 59.936 33.333 24.88 24.88 46.35 2.93
198 199 1.550327 TTTGTGCACCAAACTGACCA 58.450 45.000 15.69 0.00 38.12 4.02
199 200 1.774110 TTGTGCACCAAACTGACCAT 58.226 45.000 15.69 0.00 0.00 3.55
200 201 1.317613 TGTGCACCAAACTGACCATC 58.682 50.000 15.69 0.00 0.00 3.51
201 202 0.238289 GTGCACCAAACTGACCATCG 59.762 55.000 5.22 0.00 0.00 3.84
202 203 1.210155 GCACCAAACTGACCATCGC 59.790 57.895 0.00 0.00 0.00 4.58
203 204 1.497278 CACCAAACTGACCATCGCG 59.503 57.895 0.00 0.00 0.00 5.87
204 205 1.070786 ACCAAACTGACCATCGCGT 59.929 52.632 5.77 0.00 0.00 6.01
205 206 1.227999 ACCAAACTGACCATCGCGTG 61.228 55.000 5.77 3.64 0.00 5.34
206 207 1.154413 CAAACTGACCATCGCGTGC 60.154 57.895 5.77 0.00 0.00 5.34
207 208 1.596752 AAACTGACCATCGCGTGCA 60.597 52.632 5.77 0.00 0.00 4.57
208 209 1.163420 AAACTGACCATCGCGTGCAA 61.163 50.000 5.77 0.00 0.00 4.08
209 210 1.568612 AACTGACCATCGCGTGCAAG 61.569 55.000 5.77 0.00 0.00 4.01
210 211 2.029288 CTGACCATCGCGTGCAAGT 61.029 57.895 5.77 0.00 0.00 3.16
211 212 1.568612 CTGACCATCGCGTGCAAGTT 61.569 55.000 5.77 0.00 0.00 2.66
212 213 1.132640 GACCATCGCGTGCAAGTTC 59.867 57.895 5.77 0.00 0.00 3.01
213 214 1.291877 GACCATCGCGTGCAAGTTCT 61.292 55.000 5.77 0.00 0.00 3.01
214 215 0.037697 ACCATCGCGTGCAAGTTCTA 60.038 50.000 5.77 0.00 0.00 2.10
215 216 1.290203 CCATCGCGTGCAAGTTCTAT 58.710 50.000 5.77 0.00 0.00 1.98
216 217 1.004610 CCATCGCGTGCAAGTTCTATG 60.005 52.381 5.77 0.00 0.00 2.23
217 218 1.926510 CATCGCGTGCAAGTTCTATGA 59.073 47.619 5.77 0.00 0.00 2.15
218 219 1.346365 TCGCGTGCAAGTTCTATGAC 58.654 50.000 5.77 0.00 0.00 3.06
219 220 1.067846 TCGCGTGCAAGTTCTATGACT 60.068 47.619 5.77 0.00 0.00 3.41
220 221 1.726791 CGCGTGCAAGTTCTATGACTT 59.273 47.619 0.00 0.00 40.37 3.01
221 222 2.222596 CGCGTGCAAGTTCTATGACTTC 60.223 50.000 0.00 0.00 37.76 3.01
222 223 2.222596 GCGTGCAAGTTCTATGACTTCG 60.223 50.000 0.59 0.00 37.76 3.79
223 224 2.345641 CGTGCAAGTTCTATGACTTCGG 59.654 50.000 0.00 0.00 37.76 4.30
224 225 2.673368 GTGCAAGTTCTATGACTTCGGG 59.327 50.000 0.00 0.00 37.76 5.14
225 226 2.301870 TGCAAGTTCTATGACTTCGGGT 59.698 45.455 0.00 0.00 37.76 5.28
226 227 2.673368 GCAAGTTCTATGACTTCGGGTG 59.327 50.000 0.00 0.00 37.76 4.61
227 228 3.864921 GCAAGTTCTATGACTTCGGGTGT 60.865 47.826 0.00 0.00 37.76 4.16
228 229 4.619863 GCAAGTTCTATGACTTCGGGTGTA 60.620 45.833 0.00 0.00 37.76 2.90
229 230 5.661458 CAAGTTCTATGACTTCGGGTGTAT 58.339 41.667 0.00 0.00 37.76 2.29
230 231 5.934402 AGTTCTATGACTTCGGGTGTATT 57.066 39.130 0.00 0.00 0.00 1.89
231 232 6.295719 AGTTCTATGACTTCGGGTGTATTT 57.704 37.500 0.00 0.00 0.00 1.40
232 233 7.414222 AGTTCTATGACTTCGGGTGTATTTA 57.586 36.000 0.00 0.00 0.00 1.40
233 234 7.263496 AGTTCTATGACTTCGGGTGTATTTAC 58.737 38.462 0.00 0.00 0.00 2.01
234 235 6.152932 TCTATGACTTCGGGTGTATTTACC 57.847 41.667 0.00 0.00 40.10 2.85
235 236 5.895534 TCTATGACTTCGGGTGTATTTACCT 59.104 40.000 0.00 0.00 40.66 3.08
236 237 4.460948 TGACTTCGGGTGTATTTACCTC 57.539 45.455 0.00 0.00 40.66 3.85
246 247 6.536224 CGGGTGTATTTACCTCGAAACTAAAT 59.464 38.462 0.00 0.00 40.66 1.40
305 308 6.238593 GCATGTCCTCTTATTTAGAAGGCAAG 60.239 42.308 0.00 0.00 30.91 4.01
315 1142 8.974060 TTATTTAGAAGGCAAGGTAAGGTATG 57.026 34.615 0.00 0.00 0.00 2.39
318 1145 1.200519 AGGCAAGGTAAGGTATGCGA 58.799 50.000 0.00 0.00 39.66 5.10
366 1861 1.600413 GGCTGCTTTCAAGTGGTTTCG 60.600 52.381 0.00 0.00 0.00 3.46
375 1870 6.349363 GCTTTCAAGTGGTTTCGAGGATAAAT 60.349 38.462 0.00 0.00 0.00 1.40
388 1883 8.842358 TTCGAGGATAAATTTGAGTGTTAACT 57.158 30.769 7.22 0.00 40.21 2.24
392 1887 8.934023 AGGATAAATTTGAGTGTTAACTTCCA 57.066 30.769 7.22 0.00 36.52 3.53
393 1888 9.533831 AGGATAAATTTGAGTGTTAACTTCCAT 57.466 29.630 7.22 0.00 36.52 3.41
405 1900 9.606631 AGTGTTAACTTCCATTAAATTTTTGCA 57.393 25.926 7.22 0.00 30.14 4.08
412 1907 9.620259 ACTTCCATTAAATTTTTGCAAAAGGTA 57.380 25.926 22.78 13.95 0.00 3.08
416 1911 9.007901 CCATTAAATTTTTGCAAAAGGTATGGA 57.992 29.630 27.73 15.66 0.00 3.41
424 1919 5.036117 TGCAAAAGGTATGGATAGGTCTC 57.964 43.478 0.00 0.00 0.00 3.36
426 1921 5.045213 TGCAAAAGGTATGGATAGGTCTCAA 60.045 40.000 0.00 0.00 0.00 3.02
431 1926 5.584913 AGGTATGGATAGGTCTCAATCGAT 58.415 41.667 0.00 0.00 0.00 3.59
433 1928 7.182760 AGGTATGGATAGGTCTCAATCGATTA 58.817 38.462 10.97 0.00 0.00 1.75
527 2026 8.314021 TGCACGGATCTAATTGTATAATCTCAT 58.686 33.333 0.00 0.00 0.00 2.90
541 2040 9.783256 TGTATAATCTCATGAATATAACGTCGG 57.217 33.333 0.00 0.00 0.00 4.79
543 2042 4.577834 TCTCATGAATATAACGTCGGCA 57.422 40.909 0.00 0.00 0.00 5.69
544 2043 4.939271 TCTCATGAATATAACGTCGGCAA 58.061 39.130 0.00 0.00 0.00 4.52
547 2046 5.353111 TCATGAATATAACGTCGGCAAAGA 58.647 37.500 0.00 0.00 0.00 2.52
548 2047 5.462068 TCATGAATATAACGTCGGCAAAGAG 59.538 40.000 0.00 0.00 0.00 2.85
549 2048 4.751060 TGAATATAACGTCGGCAAAGAGT 58.249 39.130 0.00 0.00 0.00 3.24
550 2049 4.802039 TGAATATAACGTCGGCAAAGAGTC 59.198 41.667 0.00 0.00 0.00 3.36
551 2050 4.650754 ATATAACGTCGGCAAAGAGTCT 57.349 40.909 0.00 0.00 0.00 3.24
552 2051 2.060326 TAACGTCGGCAAAGAGTCTG 57.940 50.000 0.00 0.00 0.00 3.51
553 2052 0.387929 AACGTCGGCAAAGAGTCTGA 59.612 50.000 0.00 0.00 0.00 3.27
554 2053 0.387929 ACGTCGGCAAAGAGTCTGAA 59.612 50.000 0.00 0.00 0.00 3.02
555 2054 1.202486 ACGTCGGCAAAGAGTCTGAAA 60.202 47.619 0.00 0.00 0.00 2.69
556 2055 1.192534 CGTCGGCAAAGAGTCTGAAAC 59.807 52.381 0.00 0.00 0.00 2.78
557 2056 2.210116 GTCGGCAAAGAGTCTGAAACA 58.790 47.619 0.00 0.00 0.00 2.83
561 2060 5.122396 GTCGGCAAAGAGTCTGAAACATAAT 59.878 40.000 0.00 0.00 0.00 1.28
567 2066 9.899226 GCAAAGAGTCTGAAACATAATAAAGTT 57.101 29.630 0.00 0.00 0.00 2.66
613 2116 3.249917 CTGTTTTGTGTTTGGGTGACAC 58.750 45.455 0.00 0.00 45.80 3.67
617 2120 1.153127 GTGTTTGGGTGACACGGGA 60.153 57.895 0.00 0.00 38.15 5.14
624 2127 2.358737 GTGACACGGGAAGGGCAG 60.359 66.667 0.00 0.00 0.00 4.85
782 2285 0.938713 GCATCAGCATCAGAGACTGC 59.061 55.000 0.00 0.00 41.58 4.40
805 2308 2.495084 AGGAGGAAACTGAAAACGAGC 58.505 47.619 0.00 0.00 44.43 5.03
814 2317 2.095059 ACTGAAAACGAGCCATCAATGC 60.095 45.455 0.00 0.00 0.00 3.56
890 2394 1.661509 GTGCCAACAAAAGCGAGCC 60.662 57.895 0.00 0.00 0.00 4.70
968 2476 5.358298 TTTCTTTTAAAGCGCCTCTTCTC 57.642 39.130 2.29 0.00 32.88 2.87
974 2482 2.762043 GCGCCTCTTCTCCCTCCT 60.762 66.667 0.00 0.00 0.00 3.69
975 2483 2.791868 GCGCCTCTTCTCCCTCCTC 61.792 68.421 0.00 0.00 0.00 3.71
976 2484 1.380515 CGCCTCTTCTCCCTCCTCA 60.381 63.158 0.00 0.00 0.00 3.86
1145 2653 3.512516 GCGCTGATGCCCAAGTCC 61.513 66.667 0.00 0.00 35.36 3.85
1184 2692 3.712907 GCCCTGGACAAGGCGGTA 61.713 66.667 0.00 0.00 45.89 4.02
1397 2905 2.426023 GTGGTGGAGAAGCACGGT 59.574 61.111 0.00 0.00 46.54 4.83
1398 2906 1.668151 GTGGTGGAGAAGCACGGTC 60.668 63.158 0.00 0.00 46.54 4.79
1399 2907 2.047179 GGTGGAGAAGCACGGTCC 60.047 66.667 0.00 0.00 0.00 4.46
1400 2908 2.584391 GGTGGAGAAGCACGGTCCT 61.584 63.158 0.00 0.00 0.00 3.85
1634 3142 3.771160 GATGACGTGGGGGAGCGT 61.771 66.667 0.00 0.00 44.50 5.07
1707 3215 1.303561 TGGCTCATGGTGCTGGAAC 60.304 57.895 10.50 0.00 0.00 3.62
1746 3254 1.204228 GCAAGACGACAACGACGACA 61.204 55.000 0.00 0.00 42.66 4.35
1750 3258 1.873355 GACGACAACGACGACAAGCC 61.873 60.000 0.00 0.00 42.66 4.35
2101 3612 1.473278 GTAGCCGTTGTACAGAGCTCT 59.527 52.381 11.45 11.45 35.03 4.09
2108 3619 3.235195 GTTGTACAGAGCTCTACGTGTG 58.765 50.000 17.75 6.37 0.00 3.82
2115 3626 1.448013 GCTCTACGTGTGCCTTCCC 60.448 63.158 0.00 0.00 0.00 3.97
2139 3650 2.027625 CTCGCCGGTTCCAGTGTTC 61.028 63.158 1.90 0.00 0.00 3.18
2258 3775 0.948623 TGATTGAAGTGACGCGGTGG 60.949 55.000 12.47 0.00 0.00 4.61
2350 3867 0.518195 TGCACGCATCACAATCACAG 59.482 50.000 0.00 0.00 0.00 3.66
2369 3886 1.959282 AGCCAAAAGAAACAGAGCAGG 59.041 47.619 0.00 0.00 0.00 4.85
2387 3904 4.617808 CAGGAATCAGAACTGCAGAATG 57.382 45.455 23.35 15.27 40.87 2.67
2388 3905 4.008330 CAGGAATCAGAACTGCAGAATGT 58.992 43.478 23.35 4.25 39.31 2.71
2389 3906 4.008330 AGGAATCAGAACTGCAGAATGTG 58.992 43.478 23.35 16.82 39.31 3.21
2390 3907 4.005650 GGAATCAGAACTGCAGAATGTGA 58.994 43.478 23.35 21.30 39.31 3.58
2391 3908 4.456911 GGAATCAGAACTGCAGAATGTGAA 59.543 41.667 23.35 8.06 39.31 3.18
2392 3909 5.391736 GGAATCAGAACTGCAGAATGTGAAG 60.392 44.000 23.35 1.72 39.31 3.02
2393 3910 3.405831 TCAGAACTGCAGAATGTGAAGG 58.594 45.455 23.35 0.00 39.31 3.46
2394 3911 3.071457 TCAGAACTGCAGAATGTGAAGGA 59.929 43.478 23.35 2.27 39.31 3.36
2395 3912 3.817084 CAGAACTGCAGAATGTGAAGGAA 59.183 43.478 23.35 0.00 39.31 3.36
2396 3913 4.276678 CAGAACTGCAGAATGTGAAGGAAA 59.723 41.667 23.35 0.00 39.31 3.13
2397 3914 4.518211 AGAACTGCAGAATGTGAAGGAAAG 59.482 41.667 23.35 0.00 39.31 2.62
2398 3915 4.090761 ACTGCAGAATGTGAAGGAAAGA 57.909 40.909 23.35 0.00 39.31 2.52
2399 3916 4.464008 ACTGCAGAATGTGAAGGAAAGAA 58.536 39.130 23.35 0.00 39.31 2.52
2400 3917 4.889409 ACTGCAGAATGTGAAGGAAAGAAA 59.111 37.500 23.35 0.00 39.31 2.52
2436 3953 2.999355 GCAGAGTGAGAACCTGAATGTC 59.001 50.000 0.00 0.00 0.00 3.06
2437 3954 3.594134 CAGAGTGAGAACCTGAATGTCC 58.406 50.000 0.00 0.00 0.00 4.02
2456 3975 7.741027 ATGTCCTGCATCAGAATTATTACTG 57.259 36.000 0.00 0.00 32.44 2.74
2458 3977 4.751600 TCCTGCATCAGAATTATTACTGCG 59.248 41.667 0.00 0.00 32.44 5.18
2459 3978 4.083643 CCTGCATCAGAATTATTACTGCGG 60.084 45.833 0.00 0.00 32.44 5.69
2460 3979 4.450976 TGCATCAGAATTATTACTGCGGT 58.549 39.130 2.42 2.42 34.57 5.68
2461 3980 5.606505 TGCATCAGAATTATTACTGCGGTA 58.393 37.500 0.00 0.00 34.57 4.02
2462 3981 5.696270 TGCATCAGAATTATTACTGCGGTAG 59.304 40.000 5.36 0.00 34.57 3.18
2463 3982 5.389935 GCATCAGAATTATTACTGCGGTAGC 60.390 44.000 5.36 0.00 45.41 3.58
2464 3983 4.628074 TCAGAATTATTACTGCGGTAGCC 58.372 43.478 5.36 0.00 44.33 3.93
2474 3993 4.979204 CGGTAGCCGTCAGAAACA 57.021 55.556 0.00 0.00 42.73 2.83
2475 3994 2.442084 CGGTAGCCGTCAGAAACAC 58.558 57.895 0.00 0.00 42.73 3.32
2476 3995 1.012486 CGGTAGCCGTCAGAAACACC 61.012 60.000 0.00 0.00 42.73 4.16
2563 4104 7.450323 TCAACATATGATAACGGATGGTCTCTA 59.550 37.037 10.38 0.00 31.50 2.43
2570 4111 7.634718 TGATAACGGATGGTCTCTAGATCTAT 58.365 38.462 2.11 0.00 0.00 1.98
2598 4139 2.430465 ACTGCAGGCATCAGTTTACAG 58.570 47.619 19.93 0.00 41.61 2.74
2674 4215 2.760634 TCCGCATACATGTCAACACT 57.239 45.000 0.00 0.00 0.00 3.55
2705 4247 4.788609 GCAAAAGTAGCGTAAGAAATGAGC 59.211 41.667 0.00 0.00 43.02 4.26
2716 4258 0.598065 GAAATGAGCGTGCCCAACTT 59.402 50.000 0.00 0.00 0.00 2.66
2807 4349 1.338769 GGGAAACGGCAGAGAAAGCTA 60.339 52.381 0.00 0.00 0.00 3.32
2808 4350 1.732809 GGAAACGGCAGAGAAAGCTAC 59.267 52.381 0.00 0.00 0.00 3.58
2809 4351 1.390463 GAAACGGCAGAGAAAGCTACG 59.610 52.381 0.00 0.00 0.00 3.51
2837 4380 1.536418 TAGCCCTGGTCACTGCACT 60.536 57.895 0.00 0.00 0.00 4.40
2870 4413 5.453567 ACACACCCTTGAAAAGCTAAATC 57.546 39.130 0.00 0.00 44.44 2.17
2963 4509 4.555511 GCTGTAAAGCTTCTTGTTCACCTG 60.556 45.833 0.00 0.00 0.00 4.00
2964 4510 4.523083 TGTAAAGCTTCTTGTTCACCTGT 58.477 39.130 0.00 0.00 0.00 4.00
2965 4511 4.947388 TGTAAAGCTTCTTGTTCACCTGTT 59.053 37.500 0.00 0.00 0.00 3.16
2989 4535 6.632909 TCATCCAAAAGGCATTAATGAGTTG 58.367 36.000 19.73 14.39 0.00 3.16
3126 4672 5.393902 AACTTCGTAAAAACATTCGTCGT 57.606 34.783 0.00 0.00 0.00 4.34
3127 4673 4.998295 ACTTCGTAAAAACATTCGTCGTC 58.002 39.130 0.00 0.00 0.00 4.20
3128 4674 4.084900 ACTTCGTAAAAACATTCGTCGTCC 60.085 41.667 0.00 0.00 0.00 4.79
3189 4738 2.205911 GCAAAGAGCGAGGATAGGAAC 58.794 52.381 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.015587 GATCTGCAGAGAAGCCTTTGG 58.984 52.381 22.96 0.00 0.00 3.28
21 22 2.988570 AGATCTGCAGAGAAGCCTTTG 58.011 47.619 22.96 0.00 0.00 2.77
22 23 3.517100 TGTAGATCTGCAGAGAAGCCTTT 59.483 43.478 22.96 1.70 0.00 3.11
23 24 3.102972 TGTAGATCTGCAGAGAAGCCTT 58.897 45.455 22.96 2.55 0.00 4.35
24 25 2.744760 TGTAGATCTGCAGAGAAGCCT 58.255 47.619 22.96 14.73 0.00 4.58
25 26 3.391965 CATGTAGATCTGCAGAGAAGCC 58.608 50.000 22.96 9.13 0.00 4.35
26 27 2.801679 GCATGTAGATCTGCAGAGAAGC 59.198 50.000 22.96 14.09 38.28 3.86
27 28 4.325028 AGCATGTAGATCTGCAGAGAAG 57.675 45.455 22.96 8.40 40.88 2.85
28 29 4.646492 TGTAGCATGTAGATCTGCAGAGAA 59.354 41.667 22.96 6.95 40.88 2.87
29 30 4.210331 TGTAGCATGTAGATCTGCAGAGA 58.790 43.478 22.96 7.11 40.88 3.10
30 31 4.548494 CTGTAGCATGTAGATCTGCAGAG 58.452 47.826 22.96 14.13 41.16 3.35
31 32 3.243670 GCTGTAGCATGTAGATCTGCAGA 60.244 47.826 20.79 20.79 41.16 4.26
32 33 3.058450 GCTGTAGCATGTAGATCTGCAG 58.942 50.000 18.65 7.63 41.45 4.41
33 34 2.544486 CGCTGTAGCATGTAGATCTGCA 60.544 50.000 16.23 16.23 40.88 4.41
34 35 2.057316 CGCTGTAGCATGTAGATCTGC 58.943 52.381 5.18 4.30 42.21 4.26
35 36 2.294512 TCCGCTGTAGCATGTAGATCTG 59.705 50.000 5.18 0.00 42.21 2.90
36 37 2.587522 TCCGCTGTAGCATGTAGATCT 58.412 47.619 0.00 0.00 42.21 2.75
37 38 3.057245 TCATCCGCTGTAGCATGTAGATC 60.057 47.826 4.59 0.00 42.21 2.75
38 39 2.893489 TCATCCGCTGTAGCATGTAGAT 59.107 45.455 4.59 0.00 42.21 1.98
39 40 2.034685 GTCATCCGCTGTAGCATGTAGA 59.965 50.000 4.59 0.00 42.21 2.59
40 41 2.223805 TGTCATCCGCTGTAGCATGTAG 60.224 50.000 4.59 0.00 42.21 2.74
41 42 1.754226 TGTCATCCGCTGTAGCATGTA 59.246 47.619 4.59 0.00 42.21 2.29
42 43 0.536724 TGTCATCCGCTGTAGCATGT 59.463 50.000 4.59 0.00 42.21 3.21
43 44 1.655484 TTGTCATCCGCTGTAGCATG 58.345 50.000 4.59 1.67 42.21 4.06
44 45 2.216046 CATTGTCATCCGCTGTAGCAT 58.784 47.619 4.59 0.00 42.21 3.79
45 46 1.655484 CATTGTCATCCGCTGTAGCA 58.345 50.000 4.59 0.00 42.21 3.49
46 47 0.940126 CCATTGTCATCCGCTGTAGC 59.060 55.000 0.00 0.00 37.78 3.58
47 48 1.586422 CCCATTGTCATCCGCTGTAG 58.414 55.000 0.00 0.00 0.00 2.74
48 49 0.463654 GCCCATTGTCATCCGCTGTA 60.464 55.000 0.00 0.00 0.00 2.74
49 50 1.750399 GCCCATTGTCATCCGCTGT 60.750 57.895 0.00 0.00 0.00 4.40
50 51 1.442526 GAGCCCATTGTCATCCGCTG 61.443 60.000 0.00 0.00 0.00 5.18
51 52 1.153086 GAGCCCATTGTCATCCGCT 60.153 57.895 0.00 0.00 0.00 5.52
52 53 1.153086 AGAGCCCATTGTCATCCGC 60.153 57.895 0.00 0.00 0.00 5.54
53 54 0.816825 CCAGAGCCCATTGTCATCCG 60.817 60.000 0.00 0.00 0.00 4.18
54 55 1.105759 GCCAGAGCCCATTGTCATCC 61.106 60.000 0.00 0.00 0.00 3.51
55 56 2.412605 GCCAGAGCCCATTGTCATC 58.587 57.895 0.00 0.00 0.00 2.92
56 57 4.672251 GCCAGAGCCCATTGTCAT 57.328 55.556 0.00 0.00 0.00 3.06
66 67 1.001641 ATTCCAGTGTGGCCAGAGC 60.002 57.895 5.11 0.00 37.47 4.09
67 68 1.310933 GCATTCCAGTGTGGCCAGAG 61.311 60.000 5.11 0.00 37.47 3.35
68 69 1.303561 GCATTCCAGTGTGGCCAGA 60.304 57.895 5.11 0.00 37.47 3.86
69 70 2.345760 GGCATTCCAGTGTGGCCAG 61.346 63.158 5.11 0.00 44.01 4.85
70 71 2.283101 GGCATTCCAGTGTGGCCA 60.283 61.111 0.00 0.00 44.01 5.36
71 72 2.283101 TGGCATTCCAGTGTGGCC 60.283 61.111 0.00 0.00 44.82 5.36
72 73 1.252904 ATGTGGCATTCCAGTGTGGC 61.253 55.000 0.00 0.00 44.48 5.01
73 74 2.019249 CTATGTGGCATTCCAGTGTGG 58.981 52.381 0.00 0.00 44.48 4.17
74 75 1.402968 GCTATGTGGCATTCCAGTGTG 59.597 52.381 0.00 0.00 44.48 3.82
75 76 1.683011 GGCTATGTGGCATTCCAGTGT 60.683 52.381 0.00 0.00 44.48 3.55
76 77 1.027357 GGCTATGTGGCATTCCAGTG 58.973 55.000 0.00 0.00 44.48 3.66
77 78 0.106519 GGGCTATGTGGCATTCCAGT 60.107 55.000 0.00 0.00 44.48 4.00
78 79 0.106569 TGGGCTATGTGGCATTCCAG 60.107 55.000 0.00 0.00 44.48 3.86
79 80 0.557238 ATGGGCTATGTGGCATTCCA 59.443 50.000 0.00 0.00 43.83 3.53
80 81 0.963962 CATGGGCTATGTGGCATTCC 59.036 55.000 2.19 0.00 43.83 3.01
81 82 0.963962 CCATGGGCTATGTGGCATTC 59.036 55.000 10.11 0.00 43.83 2.67
82 83 0.557238 TCCATGGGCTATGTGGCATT 59.443 50.000 13.02 0.00 43.83 3.56
83 84 0.781920 ATCCATGGGCTATGTGGCAT 59.218 50.000 13.02 0.00 43.83 4.40
84 85 1.443852 TATCCATGGGCTATGTGGCA 58.556 50.000 13.02 0.00 43.83 4.92
85 86 2.291153 ACATATCCATGGGCTATGTGGC 60.291 50.000 26.80 0.00 35.37 5.01
86 87 3.726557 ACATATCCATGGGCTATGTGG 57.273 47.619 26.80 11.85 35.37 4.17
87 88 3.686241 CGAACATATCCATGGGCTATGTG 59.314 47.826 27.51 18.62 36.48 3.21
88 89 3.327757 ACGAACATATCCATGGGCTATGT 59.672 43.478 24.09 24.09 37.62 2.29
89 90 3.686241 CACGAACATATCCATGGGCTATG 59.314 47.826 23.17 23.17 36.39 2.23
90 91 3.327757 ACACGAACATATCCATGGGCTAT 59.672 43.478 13.02 6.91 36.39 2.97
91 92 2.703536 ACACGAACATATCCATGGGCTA 59.296 45.455 13.02 4.60 36.39 3.93
92 93 1.490490 ACACGAACATATCCATGGGCT 59.510 47.619 13.02 2.14 36.39 5.19
93 94 1.967319 ACACGAACATATCCATGGGC 58.033 50.000 13.02 0.00 36.39 5.36
94 95 4.066646 TGTACACGAACATATCCATGGG 57.933 45.455 13.02 0.00 36.39 4.00
95 96 5.296748 TCATGTACACGAACATATCCATGG 58.703 41.667 4.97 4.97 38.01 3.66
96 97 6.843069 TTCATGTACACGAACATATCCATG 57.157 37.500 0.00 0.00 38.01 3.66
97 98 7.498900 ACATTTCATGTACACGAACATATCCAT 59.501 33.333 3.41 0.00 42.78 3.41
98 99 6.821160 ACATTTCATGTACACGAACATATCCA 59.179 34.615 3.41 0.00 42.78 3.41
99 100 7.011016 TCACATTTCATGTACACGAACATATCC 59.989 37.037 3.41 0.00 42.70 2.59
100 101 7.905126 TCACATTTCATGTACACGAACATATC 58.095 34.615 3.41 0.00 42.70 1.63
101 102 7.841915 TCACATTTCATGTACACGAACATAT 57.158 32.000 3.41 0.00 42.70 1.78
102 103 7.253950 CGATCACATTTCATGTACACGAACATA 60.254 37.037 3.41 0.00 42.70 2.29
103 104 6.455513 CGATCACATTTCATGTACACGAACAT 60.456 38.462 3.41 0.00 42.70 2.71
104 105 5.164002 CGATCACATTTCATGTACACGAACA 60.164 40.000 3.41 0.00 42.70 3.18
105 106 5.163992 ACGATCACATTTCATGTACACGAAC 60.164 40.000 3.41 0.00 42.70 3.95
106 107 4.926832 ACGATCACATTTCATGTACACGAA 59.073 37.500 0.00 0.00 42.70 3.85
107 108 4.490743 ACGATCACATTTCATGTACACGA 58.509 39.130 0.00 0.00 42.70 4.35
108 109 4.840401 ACGATCACATTTCATGTACACG 57.160 40.909 0.00 0.00 42.70 4.49
109 110 9.191995 TCATATACGATCACATTTCATGTACAC 57.808 33.333 0.00 0.00 42.70 2.90
110 111 9.757227 TTCATATACGATCACATTTCATGTACA 57.243 29.630 0.00 0.00 42.70 2.90
112 113 8.911662 CGTTCATATACGATCACATTTCATGTA 58.088 33.333 0.00 0.00 41.89 2.29
113 114 7.569408 GCGTTCATATACGATCACATTTCATGT 60.569 37.037 2.21 0.00 43.42 3.21
114 115 6.733725 GCGTTCATATACGATCACATTTCATG 59.266 38.462 2.21 0.00 43.99 3.07
115 116 6.646653 AGCGTTCATATACGATCACATTTCAT 59.353 34.615 2.21 0.00 43.99 2.57
116 117 5.983118 AGCGTTCATATACGATCACATTTCA 59.017 36.000 2.21 0.00 43.99 2.69
117 118 6.453643 AGCGTTCATATACGATCACATTTC 57.546 37.500 2.21 0.00 43.99 2.17
118 119 6.257849 ACAAGCGTTCATATACGATCACATTT 59.742 34.615 2.21 0.00 43.99 2.32
119 120 5.753438 ACAAGCGTTCATATACGATCACATT 59.247 36.000 2.21 0.00 43.99 2.71
120 121 5.289595 ACAAGCGTTCATATACGATCACAT 58.710 37.500 2.21 0.00 43.99 3.21
121 122 4.678622 ACAAGCGTTCATATACGATCACA 58.321 39.130 2.21 0.00 43.99 3.58
122 123 5.684184 TGTACAAGCGTTCATATACGATCAC 59.316 40.000 2.21 0.00 43.99 3.06
123 124 5.823353 TGTACAAGCGTTCATATACGATCA 58.177 37.500 2.21 0.00 43.99 2.92
124 125 6.417044 ACTTGTACAAGCGTTCATATACGATC 59.583 38.462 30.97 0.00 39.50 3.69
125 126 6.270815 ACTTGTACAAGCGTTCATATACGAT 58.729 36.000 30.97 7.54 42.62 3.73
126 127 5.643664 ACTTGTACAAGCGTTCATATACGA 58.356 37.500 30.97 0.00 43.00 3.43
127 128 5.944049 ACTTGTACAAGCGTTCATATACG 57.056 39.130 30.97 8.11 41.99 3.06
128 129 7.735500 TCAAACTTGTACAAGCGTTCATATAC 58.264 34.615 30.97 0.00 41.99 1.47
129 130 7.892778 TCAAACTTGTACAAGCGTTCATATA 57.107 32.000 30.97 8.26 41.99 0.86
130 131 6.795098 TCAAACTTGTACAAGCGTTCATAT 57.205 33.333 30.97 10.02 41.99 1.78
131 132 6.425417 TCATCAAACTTGTACAAGCGTTCATA 59.575 34.615 30.97 15.01 41.99 2.15
132 133 5.238432 TCATCAAACTTGTACAAGCGTTCAT 59.762 36.000 30.97 16.94 41.99 2.57
133 134 4.572795 TCATCAAACTTGTACAAGCGTTCA 59.427 37.500 30.97 15.52 41.99 3.18
134 135 4.904154 GTCATCAAACTTGTACAAGCGTTC 59.096 41.667 30.97 12.18 41.99 3.95
135 136 4.261031 GGTCATCAAACTTGTACAAGCGTT 60.261 41.667 30.97 22.85 41.99 4.84
136 137 3.250040 GGTCATCAAACTTGTACAAGCGT 59.750 43.478 30.97 18.80 41.99 5.07
137 138 3.664276 CGGTCATCAAACTTGTACAAGCG 60.664 47.826 30.97 20.82 41.99 4.68
138 139 3.364964 CCGGTCATCAAACTTGTACAAGC 60.365 47.826 30.97 14.57 41.99 4.01
139 140 4.062293 TCCGGTCATCAAACTTGTACAAG 58.938 43.478 29.76 29.76 43.79 3.16
140 141 4.074627 TCCGGTCATCAAACTTGTACAA 57.925 40.909 8.28 8.28 0.00 2.41
141 142 3.755112 TCCGGTCATCAAACTTGTACA 57.245 42.857 0.00 0.00 0.00 2.90
142 143 4.273969 TGTTTCCGGTCATCAAACTTGTAC 59.726 41.667 14.59 0.00 32.28 2.90
143 144 4.452825 TGTTTCCGGTCATCAAACTTGTA 58.547 39.130 14.59 0.00 32.28 2.41
144 145 3.283751 TGTTTCCGGTCATCAAACTTGT 58.716 40.909 14.59 0.00 32.28 3.16
145 146 3.980646 TGTTTCCGGTCATCAAACTTG 57.019 42.857 14.59 0.00 32.28 3.16
146 147 3.888930 ACATGTTTCCGGTCATCAAACTT 59.111 39.130 14.59 7.50 32.28 2.66
147 148 3.486383 ACATGTTTCCGGTCATCAAACT 58.514 40.909 14.59 1.30 32.28 2.66
148 149 3.915437 ACATGTTTCCGGTCATCAAAC 57.085 42.857 0.00 4.95 0.00 2.93
149 150 6.582677 AAATACATGTTTCCGGTCATCAAA 57.417 33.333 2.30 0.00 0.00 2.69
150 151 6.582677 AAAATACATGTTTCCGGTCATCAA 57.417 33.333 2.30 0.00 0.00 2.57
151 152 6.655425 TGTAAAATACATGTTTCCGGTCATCA 59.345 34.615 2.30 0.00 32.89 3.07
152 153 7.079182 TGTAAAATACATGTTTCCGGTCATC 57.921 36.000 2.30 0.00 32.89 2.92
153 154 7.175990 ACTTGTAAAATACATGTTTCCGGTCAT 59.824 33.333 2.30 2.41 42.28 3.06
154 155 6.487331 ACTTGTAAAATACATGTTTCCGGTCA 59.513 34.615 2.30 0.00 42.28 4.02
155 156 6.905578 ACTTGTAAAATACATGTTTCCGGTC 58.094 36.000 2.30 0.00 42.28 4.79
156 157 6.887626 ACTTGTAAAATACATGTTTCCGGT 57.112 33.333 2.30 0.00 42.28 5.28
163 164 6.699642 GGTGCACAAACTTGTAAAATACATGT 59.300 34.615 20.43 2.69 45.46 3.21
164 165 6.699204 TGGTGCACAAACTTGTAAAATACATG 59.301 34.615 20.43 0.00 39.91 3.21
165 166 6.810911 TGGTGCACAAACTTGTAAAATACAT 58.189 32.000 20.43 0.00 39.91 2.29
166 167 6.208988 TGGTGCACAAACTTGTAAAATACA 57.791 33.333 20.43 0.00 39.91 2.29
167 168 7.527084 TTTGGTGCACAAACTTGTAAAATAC 57.473 32.000 20.43 0.00 43.81 1.89
179 180 1.550327 TGGTCAGTTTGGTGCACAAA 58.450 45.000 20.43 11.67 46.34 2.83
180 181 1.680735 GATGGTCAGTTTGGTGCACAA 59.319 47.619 20.43 3.78 37.28 3.33
181 182 1.317613 GATGGTCAGTTTGGTGCACA 58.682 50.000 20.43 1.62 0.00 4.57
182 183 0.238289 CGATGGTCAGTTTGGTGCAC 59.762 55.000 8.80 8.80 0.00 4.57
183 184 1.514678 GCGATGGTCAGTTTGGTGCA 61.515 55.000 0.00 0.00 0.00 4.57
184 185 1.210155 GCGATGGTCAGTTTGGTGC 59.790 57.895 0.00 0.00 0.00 5.01
185 186 1.227999 ACGCGATGGTCAGTTTGGTG 61.228 55.000 15.93 0.00 0.00 4.17
186 187 1.070786 ACGCGATGGTCAGTTTGGT 59.929 52.632 15.93 0.00 0.00 3.67
187 188 1.497278 CACGCGATGGTCAGTTTGG 59.503 57.895 15.93 0.00 0.00 3.28
188 189 1.154413 GCACGCGATGGTCAGTTTG 60.154 57.895 15.93 0.00 0.00 2.93
189 190 1.163420 TTGCACGCGATGGTCAGTTT 61.163 50.000 15.93 0.00 0.00 2.66
190 191 1.568612 CTTGCACGCGATGGTCAGTT 61.569 55.000 15.93 0.00 0.00 3.16
191 192 2.029288 CTTGCACGCGATGGTCAGT 61.029 57.895 15.93 0.00 0.00 3.41
192 193 1.568612 AACTTGCACGCGATGGTCAG 61.569 55.000 15.93 3.00 0.00 3.51
193 194 1.565156 GAACTTGCACGCGATGGTCA 61.565 55.000 15.93 0.00 0.00 4.02
194 195 1.132640 GAACTTGCACGCGATGGTC 59.867 57.895 15.93 1.74 0.00 4.02
195 196 0.037697 TAGAACTTGCACGCGATGGT 60.038 50.000 15.93 0.70 0.00 3.55
196 197 1.004610 CATAGAACTTGCACGCGATGG 60.005 52.381 15.93 2.40 0.00 3.51
197 198 1.926510 TCATAGAACTTGCACGCGATG 59.073 47.619 15.93 8.90 0.00 3.84
198 199 1.927174 GTCATAGAACTTGCACGCGAT 59.073 47.619 15.93 0.00 0.00 4.58
199 200 1.067846 AGTCATAGAACTTGCACGCGA 60.068 47.619 15.93 0.00 0.00 5.87
200 201 1.350193 AGTCATAGAACTTGCACGCG 58.650 50.000 3.53 3.53 0.00 6.01
201 202 2.222596 CGAAGTCATAGAACTTGCACGC 60.223 50.000 0.00 0.00 39.55 5.34
202 203 2.345641 CCGAAGTCATAGAACTTGCACG 59.654 50.000 0.00 0.00 39.55 5.34
203 204 2.673368 CCCGAAGTCATAGAACTTGCAC 59.327 50.000 0.00 0.00 39.55 4.57
204 205 2.301870 ACCCGAAGTCATAGAACTTGCA 59.698 45.455 0.00 0.00 39.55 4.08
205 206 2.673368 CACCCGAAGTCATAGAACTTGC 59.327 50.000 0.00 0.00 39.55 4.01
206 207 3.926616 ACACCCGAAGTCATAGAACTTG 58.073 45.455 0.00 0.00 39.55 3.16
207 208 5.934402 ATACACCCGAAGTCATAGAACTT 57.066 39.130 0.00 0.00 42.10 2.66
208 209 5.934402 AATACACCCGAAGTCATAGAACT 57.066 39.130 0.00 0.00 0.00 3.01
209 210 6.478016 GGTAAATACACCCGAAGTCATAGAAC 59.522 42.308 0.00 0.00 31.91 3.01
210 211 6.381994 AGGTAAATACACCCGAAGTCATAGAA 59.618 38.462 0.00 0.00 39.62 2.10
211 212 5.895534 AGGTAAATACACCCGAAGTCATAGA 59.104 40.000 0.00 0.00 39.62 1.98
212 213 6.158023 AGGTAAATACACCCGAAGTCATAG 57.842 41.667 0.00 0.00 39.62 2.23
213 214 5.221106 CGAGGTAAATACACCCGAAGTCATA 60.221 44.000 0.00 0.00 39.62 2.15
214 215 4.441079 CGAGGTAAATACACCCGAAGTCAT 60.441 45.833 0.00 0.00 39.62 3.06
215 216 3.119388 CGAGGTAAATACACCCGAAGTCA 60.119 47.826 0.00 0.00 39.62 3.41
216 217 3.129287 TCGAGGTAAATACACCCGAAGTC 59.871 47.826 4.20 0.00 39.62 3.01
217 218 3.091545 TCGAGGTAAATACACCCGAAGT 58.908 45.455 4.20 0.00 39.62 3.01
218 219 3.788333 TCGAGGTAAATACACCCGAAG 57.212 47.619 4.20 0.00 39.62 3.79
219 220 4.021192 AGTTTCGAGGTAAATACACCCGAA 60.021 41.667 11.80 11.80 43.34 4.30
220 221 3.511146 AGTTTCGAGGTAAATACACCCGA 59.489 43.478 0.00 0.00 39.62 5.14
221 222 3.853475 AGTTTCGAGGTAAATACACCCG 58.147 45.455 0.00 0.00 39.62 5.28
222 223 7.550196 TGATTTAGTTTCGAGGTAAATACACCC 59.450 37.037 8.07 0.00 39.62 4.61
223 224 8.483307 TGATTTAGTTTCGAGGTAAATACACC 57.517 34.615 8.07 0.00 39.02 4.16
228 229 8.827677 GCAGTATGATTTAGTTTCGAGGTAAAT 58.172 33.333 7.91 7.91 39.69 1.40
229 230 7.009815 CGCAGTATGATTTAGTTTCGAGGTAAA 59.990 37.037 0.00 0.00 39.69 2.01
230 231 6.474427 CGCAGTATGATTTAGTTTCGAGGTAA 59.526 38.462 0.00 0.00 39.69 2.85
231 232 5.975344 CGCAGTATGATTTAGTTTCGAGGTA 59.025 40.000 0.00 0.00 39.69 3.08
232 233 4.804139 CGCAGTATGATTTAGTTTCGAGGT 59.196 41.667 0.00 0.00 39.69 3.85
233 234 5.041287 TCGCAGTATGATTTAGTTTCGAGG 58.959 41.667 0.00 0.00 39.69 4.63
234 235 5.331905 GCTCGCAGTATGATTTAGTTTCGAG 60.332 44.000 0.00 0.00 39.69 4.04
235 236 4.503007 GCTCGCAGTATGATTTAGTTTCGA 59.497 41.667 0.00 0.00 39.69 3.71
236 237 4.504461 AGCTCGCAGTATGATTTAGTTTCG 59.496 41.667 0.00 0.00 39.69 3.46
305 308 6.849305 CGAAATGTTTTATCGCATACCTTACC 59.151 38.462 0.00 0.00 0.00 2.85
315 1142 4.094911 TGCATCACGAAATGTTTTATCGC 58.905 39.130 0.00 0.00 40.09 4.58
318 1145 5.106197 TGAGCTGCATCACGAAATGTTTTAT 60.106 36.000 1.02 0.00 0.00 1.40
351 1846 6.554334 TTTATCCTCGAAACCACTTGAAAG 57.446 37.500 0.00 0.00 0.00 2.62
366 1861 9.010029 TGGAAGTTAACACTCAAATTTATCCTC 57.990 33.333 8.61 0.00 30.45 3.71
395 1890 8.382405 ACCTATCCATACCTTTTGCAAAAATTT 58.618 29.630 23.92 13.76 0.00 1.82
405 1900 6.326583 TCGATTGAGACCTATCCATACCTTTT 59.673 38.462 0.00 0.00 0.00 2.27
406 1901 5.839063 TCGATTGAGACCTATCCATACCTTT 59.161 40.000 0.00 0.00 0.00 3.11
412 1907 7.782897 TCTTAATCGATTGAGACCTATCCAT 57.217 36.000 24.21 0.00 28.86 3.41
465 1960 9.803315 GTCTTTTCTTTGTCCTTTCTTAAATGT 57.197 29.630 0.00 0.00 0.00 2.71
499 1994 8.902540 AGATTATACAATTAGATCCGTGCAAA 57.097 30.769 0.00 0.00 0.00 3.68
500 1995 8.147704 TGAGATTATACAATTAGATCCGTGCAA 58.852 33.333 0.00 0.00 0.00 4.08
517 2016 8.463607 TGCCGACGTTATATTCATGAGATTATA 58.536 33.333 0.00 0.00 0.00 0.98
527 2026 4.751060 ACTCTTTGCCGACGTTATATTCA 58.249 39.130 0.00 0.00 0.00 2.57
535 2034 0.387929 TTCAGACTCTTTGCCGACGT 59.612 50.000 0.00 0.00 0.00 4.34
537 2036 2.210116 TGTTTCAGACTCTTTGCCGAC 58.790 47.619 0.00 0.00 0.00 4.79
541 2040 9.899226 AACTTTATTATGTTTCAGACTCTTTGC 57.101 29.630 0.00 0.00 0.00 3.68
561 2060 9.136952 GCTAAGTCTCAATCGACTAAAACTTTA 57.863 33.333 8.92 0.00 43.14 1.85
567 2066 6.100004 CCTTGCTAAGTCTCAATCGACTAAA 58.900 40.000 0.00 0.00 43.14 1.85
576 2075 3.492102 AACAGCCTTGCTAAGTCTCAA 57.508 42.857 0.00 0.00 36.40 3.02
577 2076 3.492102 AAACAGCCTTGCTAAGTCTCA 57.508 42.857 0.00 0.00 36.40 3.27
586 2085 1.665169 CCAAACACAAAACAGCCTTGC 59.335 47.619 0.00 0.00 0.00 4.01
590 2089 1.205893 TCACCCAAACACAAAACAGCC 59.794 47.619 0.00 0.00 0.00 4.85
591 2090 2.267426 GTCACCCAAACACAAAACAGC 58.733 47.619 0.00 0.00 0.00 4.40
598 2097 1.452289 CCCGTGTCACCCAAACACA 60.452 57.895 7.13 0.00 45.81 3.72
613 2116 2.359975 GTGTTCCTGCCCTTCCCG 60.360 66.667 0.00 0.00 0.00 5.14
617 2120 0.468029 CCACTTGTGTTCCTGCCCTT 60.468 55.000 0.00 0.00 0.00 3.95
624 2127 2.593026 TGGGAATTCCACTTGTGTTCC 58.407 47.619 25.67 11.07 41.46 3.62
709 2212 2.276740 GATTGACTGGCCAGGGGG 59.723 66.667 35.42 13.22 37.18 5.40
782 2285 4.789802 GCTCGTTTTCAGTTTCCTCCTTTG 60.790 45.833 0.00 0.00 0.00 2.77
820 2323 6.725364 ACTCTCTCTCATTTCTCTCTCTCTT 58.275 40.000 0.00 0.00 0.00 2.85
821 2324 6.319048 ACTCTCTCTCATTTCTCTCTCTCT 57.681 41.667 0.00 0.00 0.00 3.10
822 2325 6.678900 GCAACTCTCTCTCATTTCTCTCTCTC 60.679 46.154 0.00 0.00 0.00 3.20
839 2342 5.743872 CAGGTTTGTTTGTTTAGCAACTCTC 59.256 40.000 0.00 0.00 36.72 3.20
890 2394 0.387750 GCTTTCAGCTTCGCCTTTGG 60.388 55.000 0.00 0.00 38.45 3.28
968 2476 1.492599 GAAAGGGAAGGATGAGGAGGG 59.507 57.143 0.00 0.00 0.00 4.30
974 2482 2.359376 TCAGGGAAAGGGAAGGATGA 57.641 50.000 0.00 0.00 0.00 2.92
975 2483 2.947695 GCTTCAGGGAAAGGGAAGGATG 60.948 54.545 0.00 0.00 38.71 3.51
976 2484 1.286257 GCTTCAGGGAAAGGGAAGGAT 59.714 52.381 0.00 0.00 38.71 3.24
1020 2528 2.439701 TAGTCCTGTCCCGCTCCG 60.440 66.667 0.00 0.00 0.00 4.63
1024 2532 0.811616 CATTGCTAGTCCTGTCCCGC 60.812 60.000 0.00 0.00 0.00 6.13
1025 2533 0.824109 TCATTGCTAGTCCTGTCCCG 59.176 55.000 0.00 0.00 0.00 5.14
1028 2536 5.078411 TCTTCTTCATTGCTAGTCCTGTC 57.922 43.478 0.00 0.00 0.00 3.51
1029 2537 5.188555 TGATCTTCTTCATTGCTAGTCCTGT 59.811 40.000 0.00 0.00 0.00 4.00
1030 2538 5.668471 TGATCTTCTTCATTGCTAGTCCTG 58.332 41.667 0.00 0.00 0.00 3.86
1031 2539 5.946942 TGATCTTCTTCATTGCTAGTCCT 57.053 39.130 0.00 0.00 0.00 3.85
1032 2540 5.526846 CCTTGATCTTCTTCATTGCTAGTCC 59.473 44.000 0.00 0.00 0.00 3.85
1033 2541 5.007528 GCCTTGATCTTCTTCATTGCTAGTC 59.992 44.000 0.00 0.00 0.00 2.59
1034 2542 4.880696 GCCTTGATCTTCTTCATTGCTAGT 59.119 41.667 0.00 0.00 0.00 2.57
1035 2543 4.025061 CGCCTTGATCTTCTTCATTGCTAG 60.025 45.833 0.00 0.00 0.00 3.42
1036 2544 3.873361 CGCCTTGATCTTCTTCATTGCTA 59.127 43.478 0.00 0.00 0.00 3.49
1145 2653 3.129502 CTGGACGGGCTGCACATG 61.130 66.667 1.50 0.00 0.00 3.21
1253 2761 1.390565 ACAGCGGGCTACTAGTACTG 58.609 55.000 5.39 13.26 0.00 2.74
1376 2884 2.847234 TGCTTCTCCACCACCGGT 60.847 61.111 0.00 0.00 35.62 5.28
1707 3215 2.438434 GTGGGGTTCATGGCTCCG 60.438 66.667 0.00 0.00 0.00 4.63
1746 3254 0.035458 CCGTCTTCTTGGTCTGGCTT 59.965 55.000 0.00 0.00 0.00 4.35
1750 3258 1.738099 CGCCCGTCTTCTTGGTCTG 60.738 63.158 0.00 0.00 0.00 3.51
1829 3340 1.153369 GCACCGCATTAGGAGCAGA 60.153 57.895 0.75 0.00 45.33 4.26
2101 3612 1.369692 CACAGGGAAGGCACACGTA 59.630 57.895 0.00 0.00 0.00 3.57
2134 3645 2.468831 TGCAAAGCGGAAAATGAACAC 58.531 42.857 0.00 0.00 0.00 3.32
2258 3775 2.206576 AGAAGCCATGTCCCTTTCAC 57.793 50.000 0.00 0.00 0.00 3.18
2350 3867 1.956477 TCCTGCTCTGTTTCTTTTGGC 59.044 47.619 0.00 0.00 0.00 4.52
2369 3886 5.391736 CCTTCACATTCTGCAGTTCTGATTC 60.392 44.000 14.67 0.00 0.00 2.52
2383 3900 4.515567 ACGACCTTTCTTTCCTTCACATTC 59.484 41.667 0.00 0.00 0.00 2.67
2384 3901 4.461198 ACGACCTTTCTTTCCTTCACATT 58.539 39.130 0.00 0.00 0.00 2.71
2385 3902 4.065789 GACGACCTTTCTTTCCTTCACAT 58.934 43.478 0.00 0.00 0.00 3.21
2386 3903 3.463944 GACGACCTTTCTTTCCTTCACA 58.536 45.455 0.00 0.00 0.00 3.58
2387 3904 2.806818 GGACGACCTTTCTTTCCTTCAC 59.193 50.000 0.00 0.00 0.00 3.18
2388 3905 2.547218 CGGACGACCTTTCTTTCCTTCA 60.547 50.000 1.72 0.00 0.00 3.02
2389 3906 2.067013 CGGACGACCTTTCTTTCCTTC 58.933 52.381 1.72 0.00 0.00 3.46
2390 3907 1.690352 TCGGACGACCTTTCTTTCCTT 59.310 47.619 1.72 0.00 0.00 3.36
2391 3908 1.000618 GTCGGACGACCTTTCTTTCCT 59.999 52.381 13.49 0.00 39.08 3.36
2392 3909 1.426423 GTCGGACGACCTTTCTTTCC 58.574 55.000 13.49 0.00 39.08 3.13
2393 3910 1.058404 CGTCGGACGACCTTTCTTTC 58.942 55.000 25.29 0.00 46.05 2.62
2394 3911 0.942884 GCGTCGGACGACCTTTCTTT 60.943 55.000 32.48 0.00 46.05 2.52
2395 3912 1.372623 GCGTCGGACGACCTTTCTT 60.373 57.895 32.48 0.00 46.05 2.52
2396 3913 2.257676 GCGTCGGACGACCTTTCT 59.742 61.111 32.48 0.00 46.05 2.52
2397 3914 2.087009 CAGCGTCGGACGACCTTTC 61.087 63.158 32.48 14.30 46.05 2.62
2398 3915 2.049433 CAGCGTCGGACGACCTTT 60.049 61.111 32.48 9.94 46.05 3.11
2399 3916 4.719369 GCAGCGTCGGACGACCTT 62.719 66.667 32.48 12.32 46.05 3.50
2436 3953 4.083643 CCGCAGTAATAATTCTGATGCAGG 60.084 45.833 0.00 0.00 34.02 4.85
2437 3954 4.512944 ACCGCAGTAATAATTCTGATGCAG 59.487 41.667 0.00 0.00 34.02 4.41
2458 3977 1.012486 CGGTGTTTCTGACGGCTACC 61.012 60.000 0.00 0.00 0.00 3.18
2459 3978 1.623973 GCGGTGTTTCTGACGGCTAC 61.624 60.000 0.00 0.00 36.87 3.58
2460 3979 1.373748 GCGGTGTTTCTGACGGCTA 60.374 57.895 0.00 0.00 36.87 3.93
2461 3980 2.665185 GCGGTGTTTCTGACGGCT 60.665 61.111 0.00 0.00 36.87 5.52
2462 3981 4.072088 CGCGGTGTTTCTGACGGC 62.072 66.667 0.00 0.00 36.57 5.68
2463 3982 3.411351 CCGCGGTGTTTCTGACGG 61.411 66.667 19.50 0.00 36.43 4.79
2464 3983 4.072088 GCCGCGGTGTTTCTGACG 62.072 66.667 28.70 0.00 0.00 4.35
2465 3984 3.723348 GGCCGCGGTGTTTCTGAC 61.723 66.667 28.70 5.99 0.00 3.51
2466 3985 3.876589 GAGGCCGCGGTGTTTCTGA 62.877 63.158 28.70 0.00 0.00 3.27
2467 3986 3.423154 GAGGCCGCGGTGTTTCTG 61.423 66.667 28.70 0.00 0.00 3.02
2468 3987 3.883744 CTGAGGCCGCGGTGTTTCT 62.884 63.158 28.70 16.03 0.00 2.52
2469 3988 3.423154 CTGAGGCCGCGGTGTTTC 61.423 66.667 28.70 18.52 0.00 2.78
2563 4104 4.687219 GCCTGCAGTTTGGGTTATAGATCT 60.687 45.833 13.81 0.00 0.00 2.75
2570 4111 1.202989 TGATGCCTGCAGTTTGGGTTA 60.203 47.619 13.81 0.00 0.00 2.85
2598 4139 4.980903 CTGTGGGCGTGCGTTTGC 62.981 66.667 0.00 0.00 43.20 3.68
2674 4215 5.467399 TCTTACGCTACTTTTGCTTTGCTAA 59.533 36.000 0.00 0.00 0.00 3.09
2705 4247 0.109319 GCCATTACAAGTTGGGCACG 60.109 55.000 13.99 0.00 44.01 5.34
2716 4258 2.045438 CCACCTGCCGCCATTACA 60.045 61.111 0.00 0.00 0.00 2.41
2807 4349 2.100989 CCAGGGCTAGAAGTAGAACGT 58.899 52.381 0.00 0.00 0.00 3.99
2808 4350 2.099427 GACCAGGGCTAGAAGTAGAACG 59.901 54.545 0.00 0.00 0.00 3.95
2809 4351 3.097614 TGACCAGGGCTAGAAGTAGAAC 58.902 50.000 0.00 0.00 0.00 3.01
2837 4380 2.105821 CAAGGGTGTGTAGGTTCTTCCA 59.894 50.000 0.00 0.00 39.02 3.53
2963 4509 6.633856 ACTCATTAATGCCTTTTGGATGAAC 58.366 36.000 10.76 0.00 44.07 3.18
2964 4510 6.855763 ACTCATTAATGCCTTTTGGATGAA 57.144 33.333 10.76 0.00 44.07 2.57
2965 4511 6.632909 CAACTCATTAATGCCTTTTGGATGA 58.367 36.000 10.76 0.00 44.07 2.92
3126 4672 1.076014 TGTAGAGTGCCTCACGGGA 59.924 57.895 5.21 0.00 39.64 5.14
3127 4673 1.215647 GTGTAGAGTGCCTCACGGG 59.784 63.158 5.21 0.00 39.64 5.28
3128 4674 0.603569 AAGTGTAGAGTGCCTCACGG 59.396 55.000 5.21 0.00 39.64 4.94
3189 4738 4.197750 CCTTCAAGTGATTCAGGATCCTG 58.802 47.826 32.60 32.60 44.86 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.