Multiple sequence alignment - TraesCS5A01G190200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G190200 chr5A 100.000 3023 0 0 1 3023 394755627 394752605 0.000000e+00 5583.0
1 TraesCS5A01G190200 chr5D 91.748 2775 148 31 1 2760 302971639 302974347 0.000000e+00 3781.0
2 TraesCS5A01G190200 chr5B 89.675 2460 103 45 1 2439 347987352 347989681 0.000000e+00 2996.0
3 TraesCS5A01G190200 chr5B 93.421 76 3 1 2687 2760 347991381 347991456 8.860000e-21 111.0
4 TraesCS5A01G190200 chr4A 97.753 267 6 0 2757 3023 97264163 97263897 7.640000e-126 460.0
5 TraesCS5A01G190200 chr1A 97.070 273 7 1 2752 3023 102160631 102160903 2.750000e-125 459.0
6 TraesCS5A01G190200 chr3A 97.719 263 6 0 2761 3023 658886551 658886289 1.280000e-123 453.0
7 TraesCS5A01G190200 chr3A 97.710 262 6 0 2761 3022 638935245 638934984 4.600000e-123 451.0
8 TraesCS5A01G190200 chr3A 97.338 263 7 0 2761 3023 456751530 456751268 5.940000e-122 448.0
9 TraesCS5A01G190200 chr3A 96.642 268 7 2 2756 3023 323097713 323097978 7.690000e-121 444.0
10 TraesCS5A01G190200 chr7A 97.348 264 6 1 2761 3023 671309662 671309399 5.940000e-122 448.0
11 TraesCS5A01G190200 chr7A 97.338 263 7 0 2761 3023 720917218 720917480 5.940000e-122 448.0
12 TraesCS5A01G190200 chr6B 96.324 272 10 0 2752 3023 642911640 642911369 5.940000e-122 448.0
13 TraesCS5A01G190200 chr6B 74.254 268 44 17 939 1183 580241103 580241368 4.150000e-14 89.8
14 TraesCS5A01G190200 chr6D 75.000 264 46 14 939 1183 388322182 388322444 1.480000e-18 104.0
15 TraesCS5A01G190200 chr6A 74.254 268 44 17 939 1183 534949048 534949313 4.150000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G190200 chr5A 394752605 394755627 3022 True 5583.0 5583 100.000 1 3023 1 chr5A.!!$R1 3022
1 TraesCS5A01G190200 chr5D 302971639 302974347 2708 False 3781.0 3781 91.748 1 2760 1 chr5D.!!$F1 2759
2 TraesCS5A01G190200 chr5B 347987352 347991456 4104 False 1553.5 2996 91.548 1 2760 2 chr5B.!!$F1 2759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 296 0.109319 GCCATTACAAGTTGGGCACG 60.109 55.0 13.99 0.0 44.01 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2214 2258 0.938713 GCATCAGCATCAGAGACTGC 59.061 55.0 0.0 0.0 41.58 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.632909 CAACTCATTAATGCCTTTTGGATGA 58.367 36.000 10.76 0.00 44.07 2.92
32 33 6.855763 ACTCATTAATGCCTTTTGGATGAA 57.144 33.333 10.76 0.00 44.07 2.57
33 34 6.633856 ACTCATTAATGCCTTTTGGATGAAC 58.366 36.000 10.76 0.00 44.07 3.18
159 163 2.105821 CAAGGGTGTGTAGGTTCTTCCA 59.894 50.000 0.00 0.00 39.02 3.53
187 191 3.097614 TGACCAGGGCTAGAAGTAGAAC 58.902 50.000 0.00 0.00 0.00 3.01
188 192 2.099427 GACCAGGGCTAGAAGTAGAACG 59.901 54.545 0.00 0.00 0.00 3.95
280 285 2.045438 CCACCTGCCGCCATTACA 60.045 61.111 0.00 0.00 0.00 2.41
291 296 0.109319 GCCATTACAAGTTGGGCACG 60.109 55.000 13.99 0.00 44.01 5.34
322 328 5.467399 TCTTACGCTACTTTTGCTTTGCTAA 59.533 36.000 0.00 0.00 0.00 3.09
398 404 4.980903 CTGTGGGCGTGCGTTTGC 62.981 66.667 0.00 0.00 43.20 3.68
426 432 1.202989 TGATGCCTGCAGTTTGGGTTA 60.203 47.619 13.81 0.00 0.00 2.85
433 439 4.687219 GCCTGCAGTTTGGGTTATAGATCT 60.687 45.833 13.81 0.00 0.00 2.75
527 555 3.423154 CTGAGGCCGCGGTGTTTC 61.423 66.667 28.70 18.52 0.00 2.78
528 556 3.883744 CTGAGGCCGCGGTGTTTCT 62.884 63.158 28.70 16.03 0.00 2.52
529 557 3.423154 GAGGCCGCGGTGTTTCTG 61.423 66.667 28.70 0.00 0.00 3.02
530 558 3.876589 GAGGCCGCGGTGTTTCTGA 62.877 63.158 28.70 0.00 0.00 3.27
531 559 3.723348 GGCCGCGGTGTTTCTGAC 61.723 66.667 28.70 5.99 0.00 3.51
532 560 4.072088 GCCGCGGTGTTTCTGACG 62.072 66.667 28.70 0.00 0.00 4.35
533 561 3.411351 CCGCGGTGTTTCTGACGG 61.411 66.667 19.50 0.00 36.43 4.79
534 562 4.072088 CGCGGTGTTTCTGACGGC 62.072 66.667 0.00 0.00 36.57 5.68
535 563 2.665185 GCGGTGTTTCTGACGGCT 60.665 61.111 0.00 0.00 36.87 5.52
536 564 1.373748 GCGGTGTTTCTGACGGCTA 60.374 57.895 0.00 0.00 36.87 3.93
537 565 1.623973 GCGGTGTTTCTGACGGCTAC 61.624 60.000 0.00 0.00 36.87 3.58
538 566 1.012486 CGGTGTTTCTGACGGCTACC 61.012 60.000 0.00 0.00 0.00 3.18
559 587 4.512944 ACCGCAGTAATAATTCTGATGCAG 59.487 41.667 0.00 0.00 34.02 4.41
597 627 4.719369 GCAGCGTCGGACGACCTT 62.719 66.667 32.48 12.32 46.05 3.50
598 628 2.049433 CAGCGTCGGACGACCTTT 60.049 61.111 32.48 9.94 46.05 3.11
599 629 2.087009 CAGCGTCGGACGACCTTTC 61.087 63.158 32.48 14.30 46.05 2.62
600 630 2.257676 GCGTCGGACGACCTTTCT 59.742 61.111 32.48 0.00 46.05 2.52
601 631 1.372623 GCGTCGGACGACCTTTCTT 60.373 57.895 32.48 0.00 46.05 2.52
602 632 0.942884 GCGTCGGACGACCTTTCTTT 60.943 55.000 32.48 0.00 46.05 2.52
603 633 1.058404 CGTCGGACGACCTTTCTTTC 58.942 55.000 25.29 0.00 46.05 2.62
604 634 1.426423 GTCGGACGACCTTTCTTTCC 58.574 55.000 13.49 0.00 39.08 3.13
605 635 1.000618 GTCGGACGACCTTTCTTTCCT 59.999 52.381 13.49 0.00 39.08 3.36
606 636 1.690352 TCGGACGACCTTTCTTTCCTT 59.310 47.619 1.72 0.00 0.00 3.36
607 637 2.067013 CGGACGACCTTTCTTTCCTTC 58.933 52.381 1.72 0.00 0.00 3.46
608 638 2.547218 CGGACGACCTTTCTTTCCTTCA 60.547 50.000 1.72 0.00 0.00 3.02
609 639 2.806818 GGACGACCTTTCTTTCCTTCAC 59.193 50.000 0.00 0.00 0.00 3.18
610 640 3.463944 GACGACCTTTCTTTCCTTCACA 58.536 45.455 0.00 0.00 0.00 3.58
611 641 4.065789 GACGACCTTTCTTTCCTTCACAT 58.934 43.478 0.00 0.00 0.00 3.21
612 642 4.461198 ACGACCTTTCTTTCCTTCACATT 58.539 39.130 0.00 0.00 0.00 2.71
613 643 4.515567 ACGACCTTTCTTTCCTTCACATTC 59.484 41.667 0.00 0.00 0.00 2.67
627 657 5.391736 CCTTCACATTCTGCAGTTCTGATTC 60.392 44.000 14.67 0.00 0.00 2.52
646 676 1.956477 TCCTGCTCTGTTTCTTTTGGC 59.044 47.619 0.00 0.00 0.00 4.52
738 768 2.206576 AGAAGCCATGTCCCTTTCAC 57.793 50.000 0.00 0.00 0.00 3.18
862 898 2.468831 TGCAAAGCGGAAAATGAACAC 58.531 42.857 0.00 0.00 0.00 3.32
895 931 1.369692 CACAGGGAAGGCACACGTA 59.630 57.895 0.00 0.00 0.00 3.57
1167 1203 1.153369 GCACCGCATTAGGAGCAGA 60.153 57.895 0.75 0.00 45.33 4.26
1246 1285 1.738099 CGCCCGTCTTCTTGGTCTG 60.738 63.158 0.00 0.00 0.00 3.51
1250 1289 0.035458 CCGTCTTCTTGGTCTGGCTT 59.965 55.000 0.00 0.00 0.00 4.35
1289 1328 2.438434 GTGGGGTTCATGGCTCCG 60.438 66.667 0.00 0.00 0.00 4.63
1620 1659 2.847234 TGCTTCTCCACCACCGGT 60.847 61.111 0.00 0.00 35.62 5.28
1743 1782 1.390565 ACAGCGGGCTACTAGTACTG 58.609 55.000 5.39 13.26 0.00 2.74
1851 1890 3.129502 CTGGACGGGCTGCACATG 61.130 66.667 1.50 0.00 0.00 3.21
1960 1999 3.873361 CGCCTTGATCTTCTTCATTGCTA 59.127 43.478 0.00 0.00 0.00 3.49
1961 2000 4.025061 CGCCTTGATCTTCTTCATTGCTAG 60.025 45.833 0.00 0.00 0.00 3.42
1962 2001 4.880696 GCCTTGATCTTCTTCATTGCTAGT 59.119 41.667 0.00 0.00 0.00 2.57
1973 2012 0.978146 ATTGCTAGTCCTGTCCCGCT 60.978 55.000 0.00 0.00 0.00 5.52
1974 2013 1.605058 TTGCTAGTCCTGTCCCGCTC 61.605 60.000 0.00 0.00 0.00 5.03
1975 2014 2.787567 GCTAGTCCTGTCCCGCTCC 61.788 68.421 0.00 0.00 0.00 4.70
1976 2015 2.439701 TAGTCCTGTCCCGCTCCG 60.440 66.667 0.00 0.00 0.00 4.63
2020 2059 1.286257 GCTTCAGGGAAAGGGAAGGAT 59.714 52.381 0.00 0.00 38.71 3.24
2026 2065 1.492599 GGGAAAGGGAAGGATGAGGAG 59.507 57.143 0.00 0.00 0.00 3.69
2027 2066 1.492599 GGAAAGGGAAGGATGAGGAGG 59.507 57.143 0.00 0.00 0.00 4.30
2028 2067 1.492599 GAAAGGGAAGGATGAGGAGGG 59.507 57.143 0.00 0.00 0.00 4.30
2106 2149 0.387750 GCTTTCAGCTTCGCCTTTGG 60.388 55.000 0.00 0.00 38.45 3.28
2157 2201 5.743872 CAGGTTTGTTTGTTTAGCAACTCTC 59.256 40.000 0.00 0.00 36.72 3.20
2174 2218 6.678900 GCAACTCTCTCTCATTTCTCTCTCTC 60.679 46.154 0.00 0.00 0.00 3.20
2175 2219 6.319048 ACTCTCTCTCATTTCTCTCTCTCT 57.681 41.667 0.00 0.00 0.00 3.10
2176 2220 6.725364 ACTCTCTCTCATTTCTCTCTCTCTT 58.275 40.000 0.00 0.00 0.00 2.85
2214 2258 4.789802 GCTCGTTTTCAGTTTCCTCCTTTG 60.790 45.833 0.00 0.00 0.00 2.77
2287 2331 2.276740 GATTGACTGGCCAGGGGG 59.723 66.667 35.42 13.22 37.18 5.40
2372 2416 2.593026 TGGGAATTCCACTTGTGTTCC 58.407 47.619 25.67 11.07 41.46 3.62
2379 2423 0.468029 CCACTTGTGTTCCTGCCCTT 60.468 55.000 0.00 0.00 0.00 3.95
2383 2427 2.359975 GTGTTCCTGCCCTTCCCG 60.360 66.667 0.00 0.00 0.00 5.14
2397 2441 0.748729 TTCCCGTGTCACCCAAACAC 60.749 55.000 0.00 0.00 42.83 3.32
2398 2442 1.452289 CCCGTGTCACCCAAACACA 60.452 57.895 7.13 0.00 45.81 3.72
2405 2453 2.267426 GTCACCCAAACACAAAACAGC 58.733 47.619 0.00 0.00 0.00 4.40
2406 2454 1.205893 TCACCCAAACACAAAACAGCC 59.794 47.619 0.00 0.00 0.00 4.85
2410 2458 1.665169 CCAAACACAAAACAGCCTTGC 59.335 47.619 0.00 0.00 0.00 4.01
2419 2467 3.492102 AAACAGCCTTGCTAAGTCTCA 57.508 42.857 0.00 0.00 36.40 3.27
2420 2468 3.492102 AACAGCCTTGCTAAGTCTCAA 57.508 42.857 0.00 0.00 36.40 3.02
2429 2477 6.100004 CCTTGCTAAGTCTCAATCGACTAAA 58.900 40.000 0.00 0.00 43.14 1.85
2435 2483 9.136952 GCTAAGTCTCAATCGACTAAAACTTTA 57.863 33.333 8.92 0.00 43.14 1.85
2455 2503 9.899226 AACTTTATTATGTTTCAGACTCTTTGC 57.101 29.630 0.00 0.00 0.00 3.68
2459 2507 2.210116 TGTTTCAGACTCTTTGCCGAC 58.790 47.619 0.00 0.00 0.00 4.79
2461 2509 0.387929 TTCAGACTCTTTGCCGACGT 59.612 50.000 0.00 0.00 0.00 4.34
2469 2517 4.751060 ACTCTTTGCCGACGTTATATTCA 58.249 39.130 0.00 0.00 0.00 2.57
2479 2527 8.463607 TGCCGACGTTATATTCATGAGATTATA 58.536 33.333 0.00 0.00 0.00 0.98
2496 2544 8.147704 TGAGATTATACAATTAGATCCGTGCAA 58.852 33.333 0.00 0.00 0.00 4.08
2497 2545 8.902540 AGATTATACAATTAGATCCGTGCAAA 57.097 30.769 0.00 0.00 0.00 3.68
2531 2583 9.803315 GTCTTTTCTTTGTCCTTTCTTAAATGT 57.197 29.630 0.00 0.00 0.00 2.71
2584 2636 7.782897 TCTTAATCGATTGAGACCTATCCAT 57.217 36.000 24.21 0.00 28.86 3.41
2590 2642 5.839063 TCGATTGAGACCTATCCATACCTTT 59.161 40.000 0.00 0.00 0.00 3.11
2601 2653 8.382405 ACCTATCCATACCTTTTGCAAAAATTT 58.618 29.630 23.92 13.76 0.00 1.82
2630 2682 9.010029 TGGAAGTTAACACTCAAATTTATCCTC 57.990 33.333 8.61 0.00 30.45 3.71
2645 2697 6.554334 TTTATCCTCGAAACCACTTGAAAG 57.446 37.500 0.00 0.00 0.00 2.62
2678 3398 5.106197 TGAGCTGCATCACGAAATGTTTTAT 60.106 36.000 1.02 0.00 0.00 1.40
2681 3401 4.094911 TGCATCACGAAATGTTTTATCGC 58.905 39.130 0.00 0.00 40.09 4.58
2691 4235 6.849305 CGAAATGTTTTATCGCATACCTTACC 59.151 38.462 0.00 0.00 0.00 2.85
2760 4306 4.504461 AGCTCGCAGTATGATTTAGTTTCG 59.496 41.667 0.00 0.00 39.69 3.46
2761 4307 4.503007 GCTCGCAGTATGATTTAGTTTCGA 59.497 41.667 0.00 0.00 39.69 3.71
2762 4308 5.331905 GCTCGCAGTATGATTTAGTTTCGAG 60.332 44.000 0.00 0.00 39.69 4.04
2763 4309 5.041287 TCGCAGTATGATTTAGTTTCGAGG 58.959 41.667 0.00 0.00 39.69 4.63
2764 4310 4.804139 CGCAGTATGATTTAGTTTCGAGGT 59.196 41.667 0.00 0.00 39.69 3.85
2765 4311 5.975344 CGCAGTATGATTTAGTTTCGAGGTA 59.025 40.000 0.00 0.00 39.69 3.08
2766 4312 6.474427 CGCAGTATGATTTAGTTTCGAGGTAA 59.526 38.462 0.00 0.00 39.69 2.85
2767 4313 7.009815 CGCAGTATGATTTAGTTTCGAGGTAAA 59.990 37.037 0.00 0.00 39.69 2.01
2768 4314 8.827677 GCAGTATGATTTAGTTTCGAGGTAAAT 58.172 33.333 7.91 7.91 39.69 1.40
2773 4319 8.483307 TGATTTAGTTTCGAGGTAAATACACC 57.517 34.615 8.07 0.00 39.02 4.16
2774 4320 7.550196 TGATTTAGTTTCGAGGTAAATACACCC 59.450 37.037 8.07 0.00 39.62 4.61
2775 4321 3.853475 AGTTTCGAGGTAAATACACCCG 58.147 45.455 0.00 0.00 39.62 5.28
2776 4322 3.511146 AGTTTCGAGGTAAATACACCCGA 59.489 43.478 0.00 0.00 39.62 5.14
2777 4323 4.021192 AGTTTCGAGGTAAATACACCCGAA 60.021 41.667 11.80 11.80 43.34 4.30
2778 4324 3.788333 TCGAGGTAAATACACCCGAAG 57.212 47.619 4.20 0.00 39.62 3.79
2779 4325 3.091545 TCGAGGTAAATACACCCGAAGT 58.908 45.455 4.20 0.00 39.62 3.01
2780 4326 3.129287 TCGAGGTAAATACACCCGAAGTC 59.871 47.826 4.20 0.00 39.62 3.01
2781 4327 3.119388 CGAGGTAAATACACCCGAAGTCA 60.119 47.826 0.00 0.00 39.62 3.41
2782 4328 4.441079 CGAGGTAAATACACCCGAAGTCAT 60.441 45.833 0.00 0.00 39.62 3.06
2783 4329 5.221106 CGAGGTAAATACACCCGAAGTCATA 60.221 44.000 0.00 0.00 39.62 2.15
2784 4330 6.158023 AGGTAAATACACCCGAAGTCATAG 57.842 41.667 0.00 0.00 39.62 2.23
2785 4331 5.895534 AGGTAAATACACCCGAAGTCATAGA 59.104 40.000 0.00 0.00 39.62 1.98
2786 4332 6.381994 AGGTAAATACACCCGAAGTCATAGAA 59.618 38.462 0.00 0.00 39.62 2.10
2787 4333 6.478016 GGTAAATACACCCGAAGTCATAGAAC 59.522 42.308 0.00 0.00 31.91 3.01
2788 4334 5.934402 AATACACCCGAAGTCATAGAACT 57.066 39.130 0.00 0.00 0.00 3.01
2789 4335 5.934402 ATACACCCGAAGTCATAGAACTT 57.066 39.130 0.00 0.00 42.10 2.66
2790 4336 3.926616 ACACCCGAAGTCATAGAACTTG 58.073 45.455 0.00 0.00 39.55 3.16
2791 4337 2.673368 CACCCGAAGTCATAGAACTTGC 59.327 50.000 0.00 0.00 39.55 4.01
2792 4338 2.301870 ACCCGAAGTCATAGAACTTGCA 59.698 45.455 0.00 0.00 39.55 4.08
2793 4339 2.673368 CCCGAAGTCATAGAACTTGCAC 59.327 50.000 0.00 0.00 39.55 4.57
2794 4340 2.345641 CCGAAGTCATAGAACTTGCACG 59.654 50.000 0.00 0.00 39.55 5.34
2795 4341 2.222596 CGAAGTCATAGAACTTGCACGC 60.223 50.000 0.00 0.00 39.55 5.34
2796 4342 1.350193 AGTCATAGAACTTGCACGCG 58.650 50.000 3.53 3.53 0.00 6.01
2797 4343 1.067846 AGTCATAGAACTTGCACGCGA 60.068 47.619 15.93 0.00 0.00 5.87
2798 4344 1.927174 GTCATAGAACTTGCACGCGAT 59.073 47.619 15.93 0.00 0.00 4.58
2799 4345 1.926510 TCATAGAACTTGCACGCGATG 59.073 47.619 15.93 8.90 0.00 3.84
2800 4346 1.004610 CATAGAACTTGCACGCGATGG 60.005 52.381 15.93 2.40 0.00 3.51
2801 4347 0.037697 TAGAACTTGCACGCGATGGT 60.038 50.000 15.93 0.70 0.00 3.55
2802 4348 1.132640 GAACTTGCACGCGATGGTC 59.867 57.895 15.93 1.74 0.00 4.02
2803 4349 1.565156 GAACTTGCACGCGATGGTCA 61.565 55.000 15.93 0.00 0.00 4.02
2804 4350 1.568612 AACTTGCACGCGATGGTCAG 61.569 55.000 15.93 3.00 0.00 3.51
2805 4351 2.029288 CTTGCACGCGATGGTCAGT 61.029 57.895 15.93 0.00 0.00 3.41
2806 4352 1.568612 CTTGCACGCGATGGTCAGTT 61.569 55.000 15.93 0.00 0.00 3.16
2807 4353 1.163420 TTGCACGCGATGGTCAGTTT 61.163 50.000 15.93 0.00 0.00 2.66
2808 4354 1.154413 GCACGCGATGGTCAGTTTG 60.154 57.895 15.93 0.00 0.00 2.93
2809 4355 1.497278 CACGCGATGGTCAGTTTGG 59.503 57.895 15.93 0.00 0.00 3.28
2810 4356 1.070786 ACGCGATGGTCAGTTTGGT 59.929 52.632 15.93 0.00 0.00 3.67
2811 4357 1.227999 ACGCGATGGTCAGTTTGGTG 61.228 55.000 15.93 0.00 0.00 4.17
2812 4358 1.210155 GCGATGGTCAGTTTGGTGC 59.790 57.895 0.00 0.00 0.00 5.01
2813 4359 1.514678 GCGATGGTCAGTTTGGTGCA 61.515 55.000 0.00 0.00 0.00 4.57
2814 4360 0.238289 CGATGGTCAGTTTGGTGCAC 59.762 55.000 8.80 8.80 0.00 4.57
2815 4361 1.317613 GATGGTCAGTTTGGTGCACA 58.682 50.000 20.43 1.62 0.00 4.57
2816 4362 1.680735 GATGGTCAGTTTGGTGCACAA 59.319 47.619 20.43 3.78 37.28 3.33
2817 4363 1.550327 TGGTCAGTTTGGTGCACAAA 58.450 45.000 20.43 11.67 46.34 2.83
2829 4375 7.527084 TTTGGTGCACAAACTTGTAAAATAC 57.473 32.000 20.43 0.00 43.81 1.89
2830 4376 6.208988 TGGTGCACAAACTTGTAAAATACA 57.791 33.333 20.43 0.00 39.91 2.29
2831 4377 6.810911 TGGTGCACAAACTTGTAAAATACAT 58.189 32.000 20.43 0.00 39.91 2.29
2832 4378 6.699204 TGGTGCACAAACTTGTAAAATACATG 59.301 34.615 20.43 0.00 39.91 3.21
2833 4379 6.699642 GGTGCACAAACTTGTAAAATACATGT 59.300 34.615 20.43 2.69 45.46 3.21
2840 4386 6.887626 ACTTGTAAAATACATGTTTCCGGT 57.112 33.333 2.30 0.00 42.28 5.28
2841 4387 6.905578 ACTTGTAAAATACATGTTTCCGGTC 58.094 36.000 2.30 0.00 42.28 4.79
2842 4388 6.487331 ACTTGTAAAATACATGTTTCCGGTCA 59.513 34.615 2.30 0.00 42.28 4.02
2843 4389 7.175990 ACTTGTAAAATACATGTTTCCGGTCAT 59.824 33.333 2.30 2.41 42.28 3.06
2844 4390 7.079182 TGTAAAATACATGTTTCCGGTCATC 57.921 36.000 2.30 0.00 32.89 2.92
2845 4391 6.655425 TGTAAAATACATGTTTCCGGTCATCA 59.345 34.615 2.30 0.00 32.89 3.07
2846 4392 6.582677 AAAATACATGTTTCCGGTCATCAA 57.417 33.333 2.30 0.00 0.00 2.57
2847 4393 6.582677 AAATACATGTTTCCGGTCATCAAA 57.417 33.333 2.30 0.00 0.00 2.69
2848 4394 3.915437 ACATGTTTCCGGTCATCAAAC 57.085 42.857 0.00 4.95 0.00 2.93
2849 4395 3.486383 ACATGTTTCCGGTCATCAAACT 58.514 40.909 14.59 1.30 32.28 2.66
2850 4396 3.888930 ACATGTTTCCGGTCATCAAACTT 59.111 39.130 14.59 7.50 32.28 2.66
2851 4397 3.980646 TGTTTCCGGTCATCAAACTTG 57.019 42.857 14.59 0.00 32.28 3.16
2852 4398 3.283751 TGTTTCCGGTCATCAAACTTGT 58.716 40.909 14.59 0.00 32.28 3.16
2853 4399 4.452825 TGTTTCCGGTCATCAAACTTGTA 58.547 39.130 14.59 0.00 32.28 2.41
2854 4400 4.273969 TGTTTCCGGTCATCAAACTTGTAC 59.726 41.667 14.59 0.00 32.28 2.90
2855 4401 3.755112 TCCGGTCATCAAACTTGTACA 57.245 42.857 0.00 0.00 0.00 2.90
2856 4402 4.074627 TCCGGTCATCAAACTTGTACAA 57.925 40.909 8.28 8.28 0.00 2.41
2857 4403 4.062293 TCCGGTCATCAAACTTGTACAAG 58.938 43.478 29.76 29.76 43.79 3.16
2858 4404 3.364964 CCGGTCATCAAACTTGTACAAGC 60.365 47.826 30.97 14.57 41.99 4.01
2859 4405 3.664276 CGGTCATCAAACTTGTACAAGCG 60.664 47.826 30.97 20.82 41.99 4.68
2860 4406 3.250040 GGTCATCAAACTTGTACAAGCGT 59.750 43.478 30.97 18.80 41.99 5.07
2861 4407 4.261031 GGTCATCAAACTTGTACAAGCGTT 60.261 41.667 30.97 22.85 41.99 4.84
2862 4408 4.904154 GTCATCAAACTTGTACAAGCGTTC 59.096 41.667 30.97 12.18 41.99 3.95
2863 4409 4.572795 TCATCAAACTTGTACAAGCGTTCA 59.427 37.500 30.97 15.52 41.99 3.18
2864 4410 5.238432 TCATCAAACTTGTACAAGCGTTCAT 59.762 36.000 30.97 16.94 41.99 2.57
2865 4411 6.425417 TCATCAAACTTGTACAAGCGTTCATA 59.575 34.615 30.97 15.01 41.99 2.15
2866 4412 6.795098 TCAAACTTGTACAAGCGTTCATAT 57.205 33.333 30.97 10.02 41.99 1.78
2867 4413 7.892778 TCAAACTTGTACAAGCGTTCATATA 57.107 32.000 30.97 8.26 41.99 0.86
2868 4414 7.735500 TCAAACTTGTACAAGCGTTCATATAC 58.264 34.615 30.97 0.00 41.99 1.47
2869 4415 5.944049 ACTTGTACAAGCGTTCATATACG 57.056 39.130 30.97 8.11 41.99 3.06
2870 4416 5.643664 ACTTGTACAAGCGTTCATATACGA 58.356 37.500 30.97 0.00 43.00 3.43
2871 4417 6.270815 ACTTGTACAAGCGTTCATATACGAT 58.729 36.000 30.97 7.54 42.62 3.73
2872 4418 6.417044 ACTTGTACAAGCGTTCATATACGATC 59.583 38.462 30.97 0.00 39.50 3.69
2873 4419 5.823353 TGTACAAGCGTTCATATACGATCA 58.177 37.500 2.21 0.00 43.99 2.92
2874 4420 5.684184 TGTACAAGCGTTCATATACGATCAC 59.316 40.000 2.21 0.00 43.99 3.06
2875 4421 4.678622 ACAAGCGTTCATATACGATCACA 58.321 39.130 2.21 0.00 43.99 3.58
2876 4422 5.289595 ACAAGCGTTCATATACGATCACAT 58.710 37.500 2.21 0.00 43.99 3.21
2877 4423 5.753438 ACAAGCGTTCATATACGATCACATT 59.247 36.000 2.21 0.00 43.99 2.71
2878 4424 6.257849 ACAAGCGTTCATATACGATCACATTT 59.742 34.615 2.21 0.00 43.99 2.32
2879 4425 6.453643 AGCGTTCATATACGATCACATTTC 57.546 37.500 2.21 0.00 43.99 2.17
2880 4426 5.983118 AGCGTTCATATACGATCACATTTCA 59.017 36.000 2.21 0.00 43.99 2.69
2881 4427 6.646653 AGCGTTCATATACGATCACATTTCAT 59.353 34.615 2.21 0.00 43.99 2.57
2882 4428 6.733725 GCGTTCATATACGATCACATTTCATG 59.266 38.462 2.21 0.00 43.99 3.07
2883 4429 7.569408 GCGTTCATATACGATCACATTTCATGT 60.569 37.037 2.21 0.00 43.42 3.21
2884 4430 8.911662 CGTTCATATACGATCACATTTCATGTA 58.088 33.333 0.00 0.00 41.89 2.29
2886 4432 9.757227 TTCATATACGATCACATTTCATGTACA 57.243 29.630 0.00 0.00 42.70 2.90
2887 4433 9.191995 TCATATACGATCACATTTCATGTACAC 57.808 33.333 0.00 0.00 42.70 2.90
2888 4434 4.840401 ACGATCACATTTCATGTACACG 57.160 40.909 0.00 0.00 42.70 4.49
2889 4435 4.490743 ACGATCACATTTCATGTACACGA 58.509 39.130 0.00 0.00 42.70 4.35
2890 4436 4.926832 ACGATCACATTTCATGTACACGAA 59.073 37.500 0.00 0.00 42.70 3.85
2891 4437 5.163992 ACGATCACATTTCATGTACACGAAC 60.164 40.000 3.41 0.00 42.70 3.95
2892 4438 5.164002 CGATCACATTTCATGTACACGAACA 60.164 40.000 3.41 0.00 42.70 3.18
2893 4439 6.455513 CGATCACATTTCATGTACACGAACAT 60.456 38.462 3.41 0.00 42.70 2.71
2894 4440 7.253950 CGATCACATTTCATGTACACGAACATA 60.254 37.037 3.41 0.00 42.70 2.29
2895 4441 7.841915 TCACATTTCATGTACACGAACATAT 57.158 32.000 3.41 0.00 42.70 1.78
2896 4442 7.905126 TCACATTTCATGTACACGAACATATC 58.095 34.615 3.41 0.00 42.70 1.63
2897 4443 7.011016 TCACATTTCATGTACACGAACATATCC 59.989 37.037 3.41 0.00 42.70 2.59
2898 4444 6.821160 ACATTTCATGTACACGAACATATCCA 59.179 34.615 3.41 0.00 42.78 3.41
2899 4445 7.498900 ACATTTCATGTACACGAACATATCCAT 59.501 33.333 3.41 0.00 42.78 3.41
2900 4446 6.843069 TTCATGTACACGAACATATCCATG 57.157 37.500 0.00 0.00 38.01 3.66
2901 4447 5.296748 TCATGTACACGAACATATCCATGG 58.703 41.667 4.97 4.97 38.01 3.66
2902 4448 4.066646 TGTACACGAACATATCCATGGG 57.933 45.455 13.02 0.00 36.39 4.00
2903 4449 1.967319 ACACGAACATATCCATGGGC 58.033 50.000 13.02 0.00 36.39 5.36
2904 4450 1.490490 ACACGAACATATCCATGGGCT 59.510 47.619 13.02 2.14 36.39 5.19
2905 4451 2.703536 ACACGAACATATCCATGGGCTA 59.296 45.455 13.02 4.60 36.39 3.93
2906 4452 3.327757 ACACGAACATATCCATGGGCTAT 59.672 43.478 13.02 6.91 36.39 2.97
2907 4453 3.686241 CACGAACATATCCATGGGCTATG 59.314 47.826 23.17 23.17 36.39 2.23
2908 4454 3.327757 ACGAACATATCCATGGGCTATGT 59.672 43.478 24.09 24.09 37.62 2.29
2909 4455 3.686241 CGAACATATCCATGGGCTATGTG 59.314 47.826 27.51 18.62 36.48 3.21
2910 4456 3.726557 ACATATCCATGGGCTATGTGG 57.273 47.619 26.80 11.85 35.37 4.17
2911 4457 2.291153 ACATATCCATGGGCTATGTGGC 60.291 50.000 26.80 0.00 35.37 5.01
2912 4458 1.443852 TATCCATGGGCTATGTGGCA 58.556 50.000 13.02 0.00 43.83 4.92
2913 4459 0.781920 ATCCATGGGCTATGTGGCAT 59.218 50.000 13.02 0.00 43.83 4.40
2914 4460 0.557238 TCCATGGGCTATGTGGCATT 59.443 50.000 13.02 0.00 43.83 3.56
2915 4461 0.963962 CCATGGGCTATGTGGCATTC 59.036 55.000 10.11 0.00 43.83 2.67
2916 4462 0.963962 CATGGGCTATGTGGCATTCC 59.036 55.000 2.19 0.00 43.83 3.01
2917 4463 0.557238 ATGGGCTATGTGGCATTCCA 59.443 50.000 0.00 0.00 43.83 3.53
2918 4464 0.106569 TGGGCTATGTGGCATTCCAG 60.107 55.000 0.00 0.00 44.48 3.86
2919 4465 0.106519 GGGCTATGTGGCATTCCAGT 60.107 55.000 0.00 0.00 44.48 4.00
2920 4466 1.027357 GGCTATGTGGCATTCCAGTG 58.973 55.000 0.00 0.00 44.48 3.66
2921 4467 1.683011 GGCTATGTGGCATTCCAGTGT 60.683 52.381 0.00 0.00 44.48 3.55
2922 4468 1.402968 GCTATGTGGCATTCCAGTGTG 59.597 52.381 0.00 0.00 44.48 3.82
2923 4469 2.019249 CTATGTGGCATTCCAGTGTGG 58.981 52.381 0.00 0.00 44.48 4.17
2924 4470 1.252904 ATGTGGCATTCCAGTGTGGC 61.253 55.000 0.00 0.00 44.48 5.01
2925 4471 2.283101 TGGCATTCCAGTGTGGCC 60.283 61.111 0.00 0.00 44.82 5.36
2926 4472 2.283101 GGCATTCCAGTGTGGCCA 60.283 61.111 0.00 0.00 44.01 5.36
2927 4473 2.345760 GGCATTCCAGTGTGGCCAG 61.346 63.158 5.11 0.00 44.01 4.85
2928 4474 1.303561 GCATTCCAGTGTGGCCAGA 60.304 57.895 5.11 0.00 37.47 3.86
2929 4475 1.310933 GCATTCCAGTGTGGCCAGAG 61.311 60.000 5.11 0.00 37.47 3.35
2930 4476 1.001641 ATTCCAGTGTGGCCAGAGC 60.002 57.895 5.11 0.00 37.47 4.09
2940 4486 4.672251 GCCAGAGCCCATTGTCAT 57.328 55.556 0.00 0.00 0.00 3.06
2941 4487 2.412605 GCCAGAGCCCATTGTCATC 58.587 57.895 0.00 0.00 0.00 2.92
2942 4488 1.105759 GCCAGAGCCCATTGTCATCC 61.106 60.000 0.00 0.00 0.00 3.51
2943 4489 0.816825 CCAGAGCCCATTGTCATCCG 60.817 60.000 0.00 0.00 0.00 4.18
2944 4490 1.153086 AGAGCCCATTGTCATCCGC 60.153 57.895 0.00 0.00 0.00 5.54
2945 4491 1.153086 GAGCCCATTGTCATCCGCT 60.153 57.895 0.00 0.00 0.00 5.52
2946 4492 1.442526 GAGCCCATTGTCATCCGCTG 61.443 60.000 0.00 0.00 0.00 5.18
2947 4493 1.750399 GCCCATTGTCATCCGCTGT 60.750 57.895 0.00 0.00 0.00 4.40
2948 4494 0.463654 GCCCATTGTCATCCGCTGTA 60.464 55.000 0.00 0.00 0.00 2.74
2949 4495 1.586422 CCCATTGTCATCCGCTGTAG 58.414 55.000 0.00 0.00 0.00 2.74
2950 4496 0.940126 CCATTGTCATCCGCTGTAGC 59.060 55.000 0.00 0.00 37.78 3.58
2951 4497 1.655484 CATTGTCATCCGCTGTAGCA 58.345 50.000 4.59 0.00 42.21 3.49
2952 4498 2.216046 CATTGTCATCCGCTGTAGCAT 58.784 47.619 4.59 0.00 42.21 3.79
2953 4499 1.655484 TTGTCATCCGCTGTAGCATG 58.345 50.000 4.59 1.67 42.21 4.06
2954 4500 0.536724 TGTCATCCGCTGTAGCATGT 59.463 50.000 4.59 0.00 42.21 3.21
2955 4501 1.754226 TGTCATCCGCTGTAGCATGTA 59.246 47.619 4.59 0.00 42.21 2.29
2956 4502 2.223805 TGTCATCCGCTGTAGCATGTAG 60.224 50.000 4.59 0.00 42.21 2.74
2957 4503 2.034685 GTCATCCGCTGTAGCATGTAGA 59.965 50.000 4.59 0.00 42.21 2.59
2958 4504 2.893489 TCATCCGCTGTAGCATGTAGAT 59.107 45.455 4.59 0.00 42.21 1.98
2959 4505 3.057245 TCATCCGCTGTAGCATGTAGATC 60.057 47.826 4.59 0.00 42.21 2.75
2960 4506 2.587522 TCCGCTGTAGCATGTAGATCT 58.412 47.619 0.00 0.00 42.21 2.75
2961 4507 2.294512 TCCGCTGTAGCATGTAGATCTG 59.705 50.000 5.18 0.00 42.21 2.90
2962 4508 2.057316 CGCTGTAGCATGTAGATCTGC 58.943 52.381 5.18 4.30 42.21 4.26
2963 4509 2.544486 CGCTGTAGCATGTAGATCTGCA 60.544 50.000 16.23 16.23 40.88 4.41
2964 4510 3.058450 GCTGTAGCATGTAGATCTGCAG 58.942 50.000 18.65 7.63 41.45 4.41
2965 4511 3.243670 GCTGTAGCATGTAGATCTGCAGA 60.244 47.826 20.79 20.79 41.16 4.26
2966 4512 4.548494 CTGTAGCATGTAGATCTGCAGAG 58.452 47.826 22.96 14.13 41.16 3.35
2967 4513 4.210331 TGTAGCATGTAGATCTGCAGAGA 58.790 43.478 22.96 7.11 40.88 3.10
2968 4514 4.646492 TGTAGCATGTAGATCTGCAGAGAA 59.354 41.667 22.96 6.95 40.88 2.87
2969 4515 4.325028 AGCATGTAGATCTGCAGAGAAG 57.675 45.455 22.96 8.40 40.88 2.85
2970 4516 2.801679 GCATGTAGATCTGCAGAGAAGC 59.198 50.000 22.96 14.09 38.28 3.86
2971 4517 3.391965 CATGTAGATCTGCAGAGAAGCC 58.608 50.000 22.96 9.13 0.00 4.35
2972 4518 2.744760 TGTAGATCTGCAGAGAAGCCT 58.255 47.619 22.96 14.73 0.00 4.58
2973 4519 3.102972 TGTAGATCTGCAGAGAAGCCTT 58.897 45.455 22.96 2.55 0.00 4.35
2974 4520 3.517100 TGTAGATCTGCAGAGAAGCCTTT 59.483 43.478 22.96 1.70 0.00 3.11
2975 4521 2.988570 AGATCTGCAGAGAAGCCTTTG 58.011 47.619 22.96 0.00 0.00 2.77
2976 4522 2.015587 GATCTGCAGAGAAGCCTTTGG 58.984 52.381 22.96 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 6.632909 TCATCCAAAAGGCATTAATGAGTTG 58.367 36.000 19.73 14.39 0.00 3.16
31 32 4.947388 TGTAAAGCTTCTTGTTCACCTGTT 59.053 37.500 0.00 0.00 0.00 3.16
32 33 4.523083 TGTAAAGCTTCTTGTTCACCTGT 58.477 39.130 0.00 0.00 0.00 4.00
33 34 4.555511 GCTGTAAAGCTTCTTGTTCACCTG 60.556 45.833 0.00 0.00 0.00 4.00
126 130 5.453567 ACACACCCTTGAAAAGCTAAATC 57.546 39.130 0.00 0.00 44.44 2.17
159 163 1.536418 TAGCCCTGGTCACTGCACT 60.536 57.895 0.00 0.00 0.00 4.40
187 191 1.390463 GAAACGGCAGAGAAAGCTACG 59.610 52.381 0.00 0.00 0.00 3.51
188 192 1.732809 GGAAACGGCAGAGAAAGCTAC 59.267 52.381 0.00 0.00 0.00 3.58
280 285 0.598065 GAAATGAGCGTGCCCAACTT 59.402 50.000 0.00 0.00 0.00 2.66
291 296 4.788609 GCAAAAGTAGCGTAAGAAATGAGC 59.211 41.667 0.00 0.00 43.02 4.26
322 328 2.760634 TCCGCATACATGTCAACACT 57.239 45.000 0.00 0.00 0.00 3.55
398 404 2.430465 ACTGCAGGCATCAGTTTACAG 58.570 47.619 19.93 0.00 41.61 2.74
426 432 7.634718 TGATAACGGATGGTCTCTAGATCTAT 58.365 38.462 2.11 0.00 0.00 1.98
433 439 7.450323 TCAACATATGATAACGGATGGTCTCTA 59.550 37.037 10.38 0.00 31.50 2.43
520 548 1.012486 CGGTAGCCGTCAGAAACACC 61.012 60.000 0.00 0.00 42.73 4.16
532 560 4.628074 TCAGAATTATTACTGCGGTAGCC 58.372 43.478 5.36 0.00 44.33 3.93
533 561 5.389935 GCATCAGAATTATTACTGCGGTAGC 60.390 44.000 5.36 0.00 45.41 3.58
534 562 5.696270 TGCATCAGAATTATTACTGCGGTAG 59.304 40.000 5.36 0.00 34.57 3.18
535 563 5.606505 TGCATCAGAATTATTACTGCGGTA 58.393 37.500 0.00 0.00 34.57 4.02
536 564 4.450976 TGCATCAGAATTATTACTGCGGT 58.549 39.130 2.42 2.42 34.57 5.68
537 565 4.083643 CCTGCATCAGAATTATTACTGCGG 60.084 45.833 0.00 0.00 32.44 5.69
538 566 4.751600 TCCTGCATCAGAATTATTACTGCG 59.248 41.667 0.00 0.00 32.44 5.18
539 567 5.528690 TGTCCTGCATCAGAATTATTACTGC 59.471 40.000 0.00 0.00 32.44 4.40
540 568 7.741027 ATGTCCTGCATCAGAATTATTACTG 57.259 36.000 0.00 0.00 32.44 2.74
559 587 3.594134 CAGAGTGAGAACCTGAATGTCC 58.406 50.000 0.00 0.00 0.00 4.02
596 626 4.889409 ACTGCAGAATGTGAAGGAAAGAAA 59.111 37.500 23.35 0.00 39.31 2.52
597 627 4.464008 ACTGCAGAATGTGAAGGAAAGAA 58.536 39.130 23.35 0.00 39.31 2.52
598 628 4.090761 ACTGCAGAATGTGAAGGAAAGA 57.909 40.909 23.35 0.00 39.31 2.52
599 629 4.518211 AGAACTGCAGAATGTGAAGGAAAG 59.482 41.667 23.35 0.00 39.31 2.62
600 630 4.276678 CAGAACTGCAGAATGTGAAGGAAA 59.723 41.667 23.35 0.00 39.31 3.13
601 631 3.817084 CAGAACTGCAGAATGTGAAGGAA 59.183 43.478 23.35 0.00 39.31 3.36
602 632 3.071457 TCAGAACTGCAGAATGTGAAGGA 59.929 43.478 23.35 2.27 39.31 3.36
603 633 3.405831 TCAGAACTGCAGAATGTGAAGG 58.594 45.455 23.35 0.00 39.31 3.46
604 634 5.391736 GGAATCAGAACTGCAGAATGTGAAG 60.392 44.000 23.35 1.72 39.31 3.02
605 635 4.456911 GGAATCAGAACTGCAGAATGTGAA 59.543 41.667 23.35 8.06 39.31 3.18
606 636 4.005650 GGAATCAGAACTGCAGAATGTGA 58.994 43.478 23.35 21.30 39.31 3.58
607 637 4.008330 AGGAATCAGAACTGCAGAATGTG 58.992 43.478 23.35 16.82 39.31 3.21
608 638 4.008330 CAGGAATCAGAACTGCAGAATGT 58.992 43.478 23.35 4.25 39.31 2.71
609 639 4.617808 CAGGAATCAGAACTGCAGAATG 57.382 45.455 23.35 15.27 40.87 2.67
627 657 1.959282 AGCCAAAAGAAACAGAGCAGG 59.041 47.619 0.00 0.00 0.00 4.85
646 676 0.518195 TGCACGCATCACAATCACAG 59.482 50.000 0.00 0.00 0.00 3.66
738 768 0.948623 TGATTGAAGTGACGCGGTGG 60.949 55.000 12.47 0.00 0.00 4.61
857 893 2.027625 CTCGCCGGTTCCAGTGTTC 61.028 63.158 1.90 0.00 0.00 3.18
881 917 1.448013 GCTCTACGTGTGCCTTCCC 60.448 63.158 0.00 0.00 0.00 3.97
888 924 3.235195 GTTGTACAGAGCTCTACGTGTG 58.765 50.000 17.75 6.37 0.00 3.82
895 931 1.473278 GTAGCCGTTGTACAGAGCTCT 59.527 52.381 11.45 11.45 35.03 4.09
1246 1285 1.873355 GACGACAACGACGACAAGCC 61.873 60.000 0.00 0.00 42.66 4.35
1250 1289 1.204228 GCAAGACGACAACGACGACA 61.204 55.000 0.00 0.00 42.66 4.35
1289 1328 1.303561 TGGCTCATGGTGCTGGAAC 60.304 57.895 10.50 0.00 0.00 3.62
1362 1401 3.771160 GATGACGTGGGGGAGCGT 61.771 66.667 0.00 0.00 44.50 5.07
1596 1635 2.584391 GGTGGAGAAGCACGGTCCT 61.584 63.158 0.00 0.00 0.00 3.85
1597 1636 2.047179 GGTGGAGAAGCACGGTCC 60.047 66.667 0.00 0.00 0.00 4.46
1598 1637 1.668151 GTGGTGGAGAAGCACGGTC 60.668 63.158 0.00 0.00 46.54 4.79
1599 1638 2.426023 GTGGTGGAGAAGCACGGT 59.574 61.111 0.00 0.00 46.54 4.83
1812 1851 3.712907 GCCCTGGACAAGGCGGTA 61.713 66.667 0.00 0.00 45.89 4.02
1851 1890 3.512516 GCGCTGATGCCCAAGTCC 61.513 66.667 0.00 0.00 35.36 3.85
2020 2059 1.380515 CGCCTCTTCTCCCTCCTCA 60.381 63.158 0.00 0.00 0.00 3.86
2026 2065 2.109425 TTTAAAGCGCCTCTTCTCCC 57.891 50.000 2.29 0.00 32.88 4.30
2027 2066 3.335579 TCTTTTAAAGCGCCTCTTCTCC 58.664 45.455 2.29 0.00 32.88 3.71
2028 2067 5.358298 TTTCTTTTAAAGCGCCTCTTCTC 57.642 39.130 2.29 0.00 32.88 2.87
2106 2149 1.661509 GTGCCAACAAAAGCGAGCC 60.662 57.895 0.00 0.00 0.00 4.70
2182 2226 2.095059 ACTGAAAACGAGCCATCAATGC 60.095 45.455 0.00 0.00 0.00 3.56
2191 2235 2.495084 AGGAGGAAACTGAAAACGAGC 58.505 47.619 0.00 0.00 44.43 5.03
2214 2258 0.938713 GCATCAGCATCAGAGACTGC 59.061 55.000 0.00 0.00 41.58 4.40
2372 2416 2.358737 GTGACACGGGAAGGGCAG 60.359 66.667 0.00 0.00 0.00 4.85
2379 2423 1.153127 GTGTTTGGGTGACACGGGA 60.153 57.895 0.00 0.00 38.15 5.14
2383 2427 3.249917 CTGTTTTGTGTTTGGGTGACAC 58.750 45.455 0.00 0.00 45.80 3.67
2429 2477 9.899226 GCAAAGAGTCTGAAACATAATAAAGTT 57.101 29.630 0.00 0.00 0.00 2.66
2435 2483 5.122396 GTCGGCAAAGAGTCTGAAACATAAT 59.878 40.000 0.00 0.00 0.00 1.28
2439 2487 2.210116 GTCGGCAAAGAGTCTGAAACA 58.790 47.619 0.00 0.00 0.00 2.83
2440 2488 1.192534 CGTCGGCAAAGAGTCTGAAAC 59.807 52.381 0.00 0.00 0.00 2.78
2442 2490 0.387929 ACGTCGGCAAAGAGTCTGAA 59.612 50.000 0.00 0.00 0.00 3.02
2443 2491 0.387929 AACGTCGGCAAAGAGTCTGA 59.612 50.000 0.00 0.00 0.00 3.27
2444 2492 2.060326 TAACGTCGGCAAAGAGTCTG 57.940 50.000 0.00 0.00 0.00 3.51
2445 2493 4.650754 ATATAACGTCGGCAAAGAGTCT 57.349 40.909 0.00 0.00 0.00 3.24
2446 2494 4.802039 TGAATATAACGTCGGCAAAGAGTC 59.198 41.667 0.00 0.00 0.00 3.36
2447 2495 4.751060 TGAATATAACGTCGGCAAAGAGT 58.249 39.130 0.00 0.00 0.00 3.24
2448 2496 5.462068 TCATGAATATAACGTCGGCAAAGAG 59.538 40.000 0.00 0.00 0.00 2.85
2449 2497 5.353111 TCATGAATATAACGTCGGCAAAGA 58.647 37.500 0.00 0.00 0.00 2.52
2450 2498 5.462068 TCTCATGAATATAACGTCGGCAAAG 59.538 40.000 0.00 0.00 0.00 2.77
2451 2499 5.353111 TCTCATGAATATAACGTCGGCAAA 58.647 37.500 0.00 0.00 0.00 3.68
2452 2500 4.939271 TCTCATGAATATAACGTCGGCAA 58.061 39.130 0.00 0.00 0.00 4.52
2453 2501 4.577834 TCTCATGAATATAACGTCGGCA 57.422 40.909 0.00 0.00 0.00 5.69
2454 2502 7.757097 ATAATCTCATGAATATAACGTCGGC 57.243 36.000 0.00 0.00 0.00 5.54
2455 2503 9.783256 TGTATAATCTCATGAATATAACGTCGG 57.217 33.333 0.00 0.00 0.00 4.79
2469 2517 8.314021 TGCACGGATCTAATTGTATAATCTCAT 58.686 33.333 0.00 0.00 0.00 2.90
2563 2615 7.182760 AGGTATGGATAGGTCTCAATCGATTA 58.817 38.462 10.97 0.00 0.00 1.75
2565 2617 5.584913 AGGTATGGATAGGTCTCAATCGAT 58.415 41.667 0.00 0.00 0.00 3.59
2570 2622 5.045213 TGCAAAAGGTATGGATAGGTCTCAA 60.045 40.000 0.00 0.00 0.00 3.02
2572 2624 5.036117 TGCAAAAGGTATGGATAGGTCTC 57.964 43.478 0.00 0.00 0.00 3.36
2580 2632 9.007901 CCATTAAATTTTTGCAAAAGGTATGGA 57.992 29.630 27.73 15.66 0.00 3.41
2584 2636 9.620259 ACTTCCATTAAATTTTTGCAAAAGGTA 57.380 25.926 22.78 13.95 0.00 3.08
2603 2655 9.533831 AGGATAAATTTGAGTGTTAACTTCCAT 57.466 29.630 7.22 0.00 36.52 3.41
2604 2656 8.934023 AGGATAAATTTGAGTGTTAACTTCCA 57.066 30.769 7.22 0.00 36.52 3.53
2608 2660 8.842358 TTCGAGGATAAATTTGAGTGTTAACT 57.158 30.769 7.22 0.00 40.21 2.24
2609 2661 9.326339 GTTTCGAGGATAAATTTGAGTGTTAAC 57.674 33.333 0.00 0.00 0.00 2.01
2621 2673 6.349363 GCTTTCAAGTGGTTTCGAGGATAAAT 60.349 38.462 0.00 0.00 0.00 1.40
2630 2682 1.600413 GGCTGCTTTCAAGTGGTTTCG 60.600 52.381 0.00 0.00 0.00 3.46
2678 3398 1.200519 AGGCAAGGTAAGGTATGCGA 58.799 50.000 0.00 0.00 39.66 5.10
2681 3401 8.974060 TTATTTAGAAGGCAAGGTAAGGTATG 57.026 34.615 0.00 0.00 0.00 2.39
2691 4235 6.238593 GCATGTCCTCTTATTTAGAAGGCAAG 60.239 42.308 0.00 0.00 30.91 4.01
2750 4296 6.536224 CGGGTGTATTTACCTCGAAACTAAAT 59.464 38.462 0.00 0.00 40.66 1.40
2760 4306 4.460948 TGACTTCGGGTGTATTTACCTC 57.539 45.455 0.00 0.00 40.66 3.85
2761 4307 5.895534 TCTATGACTTCGGGTGTATTTACCT 59.104 40.000 0.00 0.00 40.66 3.08
2762 4308 6.152932 TCTATGACTTCGGGTGTATTTACC 57.847 41.667 0.00 0.00 40.10 2.85
2763 4309 7.263496 AGTTCTATGACTTCGGGTGTATTTAC 58.737 38.462 0.00 0.00 0.00 2.01
2764 4310 7.414222 AGTTCTATGACTTCGGGTGTATTTA 57.586 36.000 0.00 0.00 0.00 1.40
2765 4311 6.295719 AGTTCTATGACTTCGGGTGTATTT 57.704 37.500 0.00 0.00 0.00 1.40
2766 4312 5.934402 AGTTCTATGACTTCGGGTGTATT 57.066 39.130 0.00 0.00 0.00 1.89
2767 4313 5.661458 CAAGTTCTATGACTTCGGGTGTAT 58.339 41.667 0.00 0.00 37.76 2.29
2768 4314 4.619863 GCAAGTTCTATGACTTCGGGTGTA 60.620 45.833 0.00 0.00 37.76 2.90
2769 4315 3.864921 GCAAGTTCTATGACTTCGGGTGT 60.865 47.826 0.00 0.00 37.76 4.16
2770 4316 2.673368 GCAAGTTCTATGACTTCGGGTG 59.327 50.000 0.00 0.00 37.76 4.61
2771 4317 2.301870 TGCAAGTTCTATGACTTCGGGT 59.698 45.455 0.00 0.00 37.76 5.28
2772 4318 2.673368 GTGCAAGTTCTATGACTTCGGG 59.327 50.000 0.00 0.00 37.76 5.14
2773 4319 2.345641 CGTGCAAGTTCTATGACTTCGG 59.654 50.000 0.00 0.00 37.76 4.30
2774 4320 2.222596 GCGTGCAAGTTCTATGACTTCG 60.223 50.000 0.59 0.00 37.76 3.79
2775 4321 2.222596 CGCGTGCAAGTTCTATGACTTC 60.223 50.000 0.00 0.00 37.76 3.01
2776 4322 1.726791 CGCGTGCAAGTTCTATGACTT 59.273 47.619 0.00 0.00 40.37 3.01
2777 4323 1.067846 TCGCGTGCAAGTTCTATGACT 60.068 47.619 5.77 0.00 0.00 3.41
2778 4324 1.346365 TCGCGTGCAAGTTCTATGAC 58.654 50.000 5.77 0.00 0.00 3.06
2779 4325 1.926510 CATCGCGTGCAAGTTCTATGA 59.073 47.619 5.77 0.00 0.00 2.15
2780 4326 1.004610 CCATCGCGTGCAAGTTCTATG 60.005 52.381 5.77 0.00 0.00 2.23
2781 4327 1.290203 CCATCGCGTGCAAGTTCTAT 58.710 50.000 5.77 0.00 0.00 1.98
2782 4328 0.037697 ACCATCGCGTGCAAGTTCTA 60.038 50.000 5.77 0.00 0.00 2.10
2783 4329 1.291877 GACCATCGCGTGCAAGTTCT 61.292 55.000 5.77 0.00 0.00 3.01
2784 4330 1.132640 GACCATCGCGTGCAAGTTC 59.867 57.895 5.77 0.00 0.00 3.01
2785 4331 1.568612 CTGACCATCGCGTGCAAGTT 61.569 55.000 5.77 0.00 0.00 2.66
2786 4332 2.029288 CTGACCATCGCGTGCAAGT 61.029 57.895 5.77 0.00 0.00 3.16
2787 4333 1.568612 AACTGACCATCGCGTGCAAG 61.569 55.000 5.77 0.00 0.00 4.01
2788 4334 1.163420 AAACTGACCATCGCGTGCAA 61.163 50.000 5.77 0.00 0.00 4.08
2789 4335 1.596752 AAACTGACCATCGCGTGCA 60.597 52.632 5.77 0.00 0.00 4.57
2790 4336 1.154413 CAAACTGACCATCGCGTGC 60.154 57.895 5.77 0.00 0.00 5.34
2791 4337 1.227999 ACCAAACTGACCATCGCGTG 61.228 55.000 5.77 3.64 0.00 5.34
2792 4338 1.070786 ACCAAACTGACCATCGCGT 59.929 52.632 5.77 0.00 0.00 6.01
2793 4339 1.497278 CACCAAACTGACCATCGCG 59.503 57.895 0.00 0.00 0.00 5.87
2794 4340 1.210155 GCACCAAACTGACCATCGC 59.790 57.895 0.00 0.00 0.00 4.58
2795 4341 0.238289 GTGCACCAAACTGACCATCG 59.762 55.000 5.22 0.00 0.00 3.84
2796 4342 1.317613 TGTGCACCAAACTGACCATC 58.682 50.000 15.69 0.00 0.00 3.51
2797 4343 1.774110 TTGTGCACCAAACTGACCAT 58.226 45.000 15.69 0.00 0.00 3.55
2798 4344 1.550327 TTTGTGCACCAAACTGACCA 58.450 45.000 15.69 0.00 38.12 4.02
2804 4350 7.063544 TGTATTTTACAAGTTTGTGCACCAAAC 59.936 33.333 24.88 24.88 46.35 2.93
2805 4351 7.097192 TGTATTTTACAAGTTTGTGCACCAAA 58.903 30.769 15.69 11.92 42.31 3.28
2806 4352 6.631016 TGTATTTTACAAGTTTGTGCACCAA 58.369 32.000 15.69 6.86 42.31 3.67
2807 4353 6.208988 TGTATTTTACAAGTTTGTGCACCA 57.791 33.333 15.69 0.00 42.31 4.17
2808 4354 6.699642 ACATGTATTTTACAAGTTTGTGCACC 59.300 34.615 15.69 0.00 42.76 5.01
2809 4355 7.692908 ACATGTATTTTACAAGTTTGTGCAC 57.307 32.000 10.75 10.75 42.76 4.57
2817 4363 6.487331 TGACCGGAAACATGTATTTTACAAGT 59.513 34.615 9.46 0.00 41.79 3.16
2818 4364 6.904498 TGACCGGAAACATGTATTTTACAAG 58.096 36.000 9.46 0.00 42.76 3.16
2819 4365 6.879276 TGACCGGAAACATGTATTTTACAA 57.121 33.333 9.46 0.00 42.76 2.41
2820 4366 6.655425 TGATGACCGGAAACATGTATTTTACA 59.345 34.615 9.46 0.18 43.80 2.41
2821 4367 7.079182 TGATGACCGGAAACATGTATTTTAC 57.921 36.000 9.46 0.00 0.00 2.01
2822 4368 7.689446 TTGATGACCGGAAACATGTATTTTA 57.311 32.000 9.46 0.00 0.00 1.52
2823 4369 6.582677 TTGATGACCGGAAACATGTATTTT 57.417 33.333 9.46 0.00 0.00 1.82
2824 4370 6.208599 AGTTTGATGACCGGAAACATGTATTT 59.791 34.615 9.46 0.00 32.96 1.40
2825 4371 5.710099 AGTTTGATGACCGGAAACATGTATT 59.290 36.000 9.46 0.00 32.96 1.89
2826 4372 5.253330 AGTTTGATGACCGGAAACATGTAT 58.747 37.500 9.46 0.00 32.96 2.29
2827 4373 4.647611 AGTTTGATGACCGGAAACATGTA 58.352 39.130 9.46 0.00 32.96 2.29
2828 4374 3.486383 AGTTTGATGACCGGAAACATGT 58.514 40.909 9.46 0.00 32.96 3.21
2829 4375 4.229096 CAAGTTTGATGACCGGAAACATG 58.771 43.478 9.46 7.51 32.96 3.21
2830 4376 3.888930 ACAAGTTTGATGACCGGAAACAT 59.111 39.130 9.46 10.96 32.96 2.71
2831 4377 3.283751 ACAAGTTTGATGACCGGAAACA 58.716 40.909 9.46 5.76 32.96 2.83
2832 4378 3.982576 ACAAGTTTGATGACCGGAAAC 57.017 42.857 9.46 8.16 0.00 2.78
2833 4379 4.452825 TGTACAAGTTTGATGACCGGAAA 58.547 39.130 9.46 0.00 0.00 3.13
2834 4380 4.074627 TGTACAAGTTTGATGACCGGAA 57.925 40.909 9.46 0.00 0.00 4.30
2835 4381 3.755112 TGTACAAGTTTGATGACCGGA 57.245 42.857 9.46 0.00 0.00 5.14
2836 4382 3.364964 GCTTGTACAAGTTTGATGACCGG 60.365 47.826 30.90 0.00 40.45 5.28
2837 4383 3.664276 CGCTTGTACAAGTTTGATGACCG 60.664 47.826 30.90 20.24 40.45 4.79
2838 4384 3.250040 ACGCTTGTACAAGTTTGATGACC 59.750 43.478 30.90 13.83 40.45 4.02
2839 4385 4.468095 ACGCTTGTACAAGTTTGATGAC 57.532 40.909 30.90 14.44 40.45 3.06
2840 4386 4.572795 TGAACGCTTGTACAAGTTTGATGA 59.427 37.500 30.90 12.07 40.45 2.92
2841 4387 4.843147 TGAACGCTTGTACAAGTTTGATG 58.157 39.130 30.90 18.16 40.45 3.07
2842 4388 5.689383 ATGAACGCTTGTACAAGTTTGAT 57.311 34.783 30.90 21.66 40.45 2.57
2843 4389 6.795098 ATATGAACGCTTGTACAAGTTTGA 57.205 33.333 30.90 20.63 40.45 2.69
2844 4390 6.676995 CGTATATGAACGCTTGTACAAGTTTG 59.323 38.462 30.90 23.58 40.45 2.93
2845 4391 6.587226 TCGTATATGAACGCTTGTACAAGTTT 59.413 34.615 30.90 24.51 42.56 2.66
2846 4392 6.094719 TCGTATATGAACGCTTGTACAAGTT 58.905 36.000 30.90 21.49 42.56 2.66
2847 4393 5.643664 TCGTATATGAACGCTTGTACAAGT 58.356 37.500 30.90 15.82 42.56 3.16
2848 4394 6.416750 TGATCGTATATGAACGCTTGTACAAG 59.583 38.462 27.85 27.85 42.56 3.16
2849 4395 6.197655 GTGATCGTATATGAACGCTTGTACAA 59.802 38.462 8.28 8.28 42.56 2.41
2850 4396 5.684184 GTGATCGTATATGAACGCTTGTACA 59.316 40.000 8.16 0.00 42.56 2.90
2851 4397 5.684184 TGTGATCGTATATGAACGCTTGTAC 59.316 40.000 14.55 0.00 42.56 2.90
2852 4398 5.823353 TGTGATCGTATATGAACGCTTGTA 58.177 37.500 14.55 0.00 42.56 2.41
2853 4399 4.678622 TGTGATCGTATATGAACGCTTGT 58.321 39.130 14.55 0.00 42.56 3.16
2854 4400 5.829233 ATGTGATCGTATATGAACGCTTG 57.171 39.130 14.55 0.00 42.56 4.01
2855 4401 6.478673 TGAAATGTGATCGTATATGAACGCTT 59.521 34.615 14.55 7.54 42.56 4.68
2856 4402 5.983118 TGAAATGTGATCGTATATGAACGCT 59.017 36.000 14.55 0.00 42.56 5.07
2857 4403 6.210396 TGAAATGTGATCGTATATGAACGC 57.790 37.500 8.42 8.42 42.56 4.84
2875 4421 7.041167 CCATGGATATGTTCGTGTACATGAAAT 60.041 37.037 27.75 23.01 39.06 2.17
2876 4422 6.259829 CCATGGATATGTTCGTGTACATGAAA 59.740 38.462 27.75 19.02 39.06 2.69
2877 4423 5.757808 CCATGGATATGTTCGTGTACATGAA 59.242 40.000 23.57 23.57 39.06 2.57
2878 4424 5.296748 CCATGGATATGTTCGTGTACATGA 58.703 41.667 13.87 13.87 39.06 3.07
2879 4425 4.452114 CCCATGGATATGTTCGTGTACATG 59.548 45.833 15.22 8.90 39.06 3.21
2880 4426 4.641396 CCCATGGATATGTTCGTGTACAT 58.359 43.478 15.22 0.00 41.43 2.29
2881 4427 3.742954 GCCCATGGATATGTTCGTGTACA 60.743 47.826 15.22 0.00 32.21 2.90
2882 4428 2.806244 GCCCATGGATATGTTCGTGTAC 59.194 50.000 15.22 0.00 32.21 2.90
2883 4429 2.703536 AGCCCATGGATATGTTCGTGTA 59.296 45.455 15.22 0.00 32.21 2.90
2884 4430 1.490490 AGCCCATGGATATGTTCGTGT 59.510 47.619 15.22 0.00 32.21 4.49
2885 4431 2.260844 AGCCCATGGATATGTTCGTG 57.739 50.000 15.22 0.00 32.21 4.35
2886 4432 3.942829 CATAGCCCATGGATATGTTCGT 58.057 45.455 15.22 0.00 44.26 3.85
2892 4438 1.994794 TGCCACATAGCCCATGGATAT 59.005 47.619 15.22 8.47 39.13 1.63
2893 4439 1.443852 TGCCACATAGCCCATGGATA 58.556 50.000 15.22 6.18 39.13 2.59
2894 4440 0.781920 ATGCCACATAGCCCATGGAT 59.218 50.000 15.22 3.69 39.13 3.41
2895 4441 0.557238 AATGCCACATAGCCCATGGA 59.443 50.000 15.22 0.00 39.13 3.41
2896 4442 0.963962 GAATGCCACATAGCCCATGG 59.036 55.000 4.14 4.14 39.13 3.66
2897 4443 0.963962 GGAATGCCACATAGCCCATG 59.036 55.000 0.00 0.00 40.78 3.66
2898 4444 0.557238 TGGAATGCCACATAGCCCAT 59.443 50.000 0.00 0.00 39.92 4.00
2899 4445 0.106569 CTGGAATGCCACATAGCCCA 60.107 55.000 0.00 0.00 39.92 5.36
2900 4446 0.106519 ACTGGAATGCCACATAGCCC 60.107 55.000 0.00 0.00 39.92 5.19
2901 4447 1.027357 CACTGGAATGCCACATAGCC 58.973 55.000 0.00 0.00 39.92 3.93
2902 4448 1.402968 CACACTGGAATGCCACATAGC 59.597 52.381 0.00 0.00 39.92 2.97
2903 4449 2.019249 CCACACTGGAATGCCACATAG 58.981 52.381 0.00 0.00 40.96 2.23
2904 4450 1.954733 GCCACACTGGAATGCCACATA 60.955 52.381 0.00 0.00 40.96 2.29
2905 4451 1.252904 GCCACACTGGAATGCCACAT 61.253 55.000 0.00 0.00 40.96 3.21
2906 4452 1.902918 GCCACACTGGAATGCCACA 60.903 57.895 0.00 0.00 40.96 4.17
2907 4453 2.639327 GGCCACACTGGAATGCCAC 61.639 63.158 0.00 0.00 40.96 5.01
2908 4454 2.283101 GGCCACACTGGAATGCCA 60.283 61.111 0.00 0.00 40.96 4.92
2909 4455 2.283101 TGGCCACACTGGAATGCC 60.283 61.111 0.00 0.00 40.96 4.40
2910 4456 1.303561 TCTGGCCACACTGGAATGC 60.304 57.895 0.00 0.00 40.96 3.56
2911 4457 1.310933 GCTCTGGCCACACTGGAATG 61.311 60.000 0.00 0.00 40.96 2.67
2912 4458 1.001641 GCTCTGGCCACACTGGAAT 60.002 57.895 0.00 0.00 40.96 3.01
2913 4459 2.431683 GCTCTGGCCACACTGGAA 59.568 61.111 0.00 0.00 40.96 3.53
2923 4469 1.105759 GGATGACAATGGGCTCTGGC 61.106 60.000 0.00 0.00 37.82 4.85
2924 4470 0.816825 CGGATGACAATGGGCTCTGG 60.817 60.000 0.00 0.00 0.00 3.86
2925 4471 1.442526 GCGGATGACAATGGGCTCTG 61.443 60.000 0.00 0.00 0.00 3.35
2926 4472 1.153086 GCGGATGACAATGGGCTCT 60.153 57.895 0.00 0.00 0.00 4.09
2927 4473 1.153086 AGCGGATGACAATGGGCTC 60.153 57.895 0.00 0.00 0.00 4.70
2928 4474 1.452651 CAGCGGATGACAATGGGCT 60.453 57.895 0.00 0.00 0.00 5.19
2929 4475 0.463654 TACAGCGGATGACAATGGGC 60.464 55.000 0.00 0.00 0.00 5.36
2930 4476 1.586422 CTACAGCGGATGACAATGGG 58.414 55.000 0.00 0.00 0.00 4.00
2931 4477 0.940126 GCTACAGCGGATGACAATGG 59.060 55.000 0.00 0.00 0.00 3.16
2932 4478 1.655484 TGCTACAGCGGATGACAATG 58.345 50.000 0.00 0.00 45.83 2.82
2933 4479 2.216046 CATGCTACAGCGGATGACAAT 58.784 47.619 0.00 0.00 45.83 2.71
2934 4480 1.066215 ACATGCTACAGCGGATGACAA 60.066 47.619 0.00 0.00 45.83 3.18
2935 4481 0.536724 ACATGCTACAGCGGATGACA 59.463 50.000 0.00 0.00 45.83 3.58
2936 4482 2.034685 TCTACATGCTACAGCGGATGAC 59.965 50.000 0.00 0.00 45.83 3.06
2937 4483 2.306847 TCTACATGCTACAGCGGATGA 58.693 47.619 0.00 0.68 45.83 2.92
2938 4484 2.800881 TCTACATGCTACAGCGGATG 57.199 50.000 0.00 0.00 45.83 3.51
2939 4485 3.056962 CAGATCTACATGCTACAGCGGAT 60.057 47.826 0.00 0.00 45.83 4.18
2940 4486 2.294512 CAGATCTACATGCTACAGCGGA 59.705 50.000 0.00 0.00 45.83 5.54
2941 4487 2.670479 CAGATCTACATGCTACAGCGG 58.330 52.381 0.00 0.00 45.83 5.52
2942 4488 2.057316 GCAGATCTACATGCTACAGCG 58.943 52.381 0.00 0.00 45.83 5.18
2943 4489 3.058450 CTGCAGATCTACATGCTACAGC 58.942 50.000 8.42 0.00 42.98 4.40
2944 4490 4.277921 TCTCTGCAGATCTACATGCTACAG 59.722 45.833 18.63 0.00 42.98 2.74
2945 4491 4.210331 TCTCTGCAGATCTACATGCTACA 58.790 43.478 18.63 0.00 42.98 2.74
2946 4492 4.844998 TCTCTGCAGATCTACATGCTAC 57.155 45.455 18.63 0.00 42.98 3.58
2947 4493 4.261952 GCTTCTCTGCAGATCTACATGCTA 60.262 45.833 18.63 0.00 42.98 3.49
2948 4494 3.493002 GCTTCTCTGCAGATCTACATGCT 60.493 47.826 18.63 0.00 42.98 3.79
2949 4495 2.801679 GCTTCTCTGCAGATCTACATGC 59.198 50.000 18.63 10.92 42.86 4.06
2950 4496 3.069872 AGGCTTCTCTGCAGATCTACATG 59.930 47.826 18.63 3.48 34.04 3.21
2951 4497 3.307506 AGGCTTCTCTGCAGATCTACAT 58.692 45.455 18.63 2.47 34.04 2.29
2952 4498 2.744760 AGGCTTCTCTGCAGATCTACA 58.255 47.619 18.63 0.00 34.04 2.74
2953 4499 3.817709 AAGGCTTCTCTGCAGATCTAC 57.182 47.619 18.63 7.61 34.04 2.59
2954 4500 3.118482 CCAAAGGCTTCTCTGCAGATCTA 60.118 47.826 18.63 2.95 34.04 1.98
2955 4501 2.355920 CCAAAGGCTTCTCTGCAGATCT 60.356 50.000 18.63 7.30 34.04 2.75
2956 4502 2.015587 CCAAAGGCTTCTCTGCAGATC 58.984 52.381 18.63 6.86 34.04 2.75
2957 4503 1.954258 GCCAAAGGCTTCTCTGCAGAT 60.954 52.381 18.63 0.00 46.69 2.90
2958 4504 0.607489 GCCAAAGGCTTCTCTGCAGA 60.607 55.000 17.19 17.19 46.69 4.26
2959 4505 1.881602 GCCAAAGGCTTCTCTGCAG 59.118 57.895 7.63 7.63 46.69 4.41
2960 4506 4.085876 GCCAAAGGCTTCTCTGCA 57.914 55.556 0.00 0.00 46.69 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.