Multiple sequence alignment - TraesCS5A01G190000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G190000 chr5A 100.000 3837 0 0 1 3837 394184239 394180403 0.000000e+00 7086.0
1 TraesCS5A01G190000 chr5A 76.023 171 33 7 209 377 569652288 569652124 8.830000e-12 82.4
2 TraesCS5A01G190000 chr5D 92.599 2824 108 45 528 3307 303761485 303758719 0.000000e+00 3964.0
3 TraesCS5A01G190000 chr5D 88.556 568 28 11 3292 3837 303758700 303758148 0.000000e+00 654.0
4 TraesCS5A01G190000 chr5B 90.681 2511 89 55 762 3217 348450380 348447960 0.000000e+00 3206.0
5 TraesCS5A01G190000 chr5B 97.802 182 4 0 574 755 348451422 348451241 8.000000e-82 315.0
6 TraesCS5A01G190000 chr5B 89.209 139 10 5 3 137 632805080 632805217 6.590000e-38 169.0
7 TraesCS5A01G190000 chr6D 86.935 199 26 0 2592 2790 388538515 388538317 1.390000e-54 224.0
8 TraesCS5A01G190000 chr6D 84.177 158 25 0 1270 1427 388540040 388539883 1.850000e-33 154.0
9 TraesCS5A01G190000 chr6D 82.353 153 25 2 2511 2662 323715240 323715391 8.650000e-27 132.0
10 TraesCS5A01G190000 chr6D 77.487 191 37 3 200 384 446918497 446918687 4.050000e-20 110.0
11 TraesCS5A01G190000 chr6D 93.750 48 2 1 1723 1769 388539566 388539519 1.910000e-08 71.3
12 TraesCS5A01G190000 chr6A 86.432 199 27 0 2592 2790 535152681 535152483 6.450000e-53 219.0
13 TraesCS5A01G190000 chr6A 80.263 152 30 0 2511 2662 461146925 461147076 8.710000e-22 115.0
14 TraesCS5A01G190000 chr6A 91.667 48 3 1 1723 1769 535153734 535153687 8.900000e-07 65.8
15 TraesCS5A01G190000 chr6B 85.427 199 29 0 2592 2790 581080112 581079914 1.400000e-49 207.0
16 TraesCS5A01G190000 chr6B 86.076 158 21 1 1270 1427 581081930 581081774 6.590000e-38 169.0
17 TraesCS5A01G190000 chr6B 84.615 117 16 2 2547 2662 500210534 500210419 8.710000e-22 115.0
18 TraesCS5A01G190000 chr6B 77.222 180 33 8 211 388 718226139 718225966 8.770000e-17 99.0
19 TraesCS5A01G190000 chr6B 93.750 48 2 1 1723 1769 581081147 581081100 1.910000e-08 71.3
20 TraesCS5A01G190000 chr3D 88.489 139 12 4 1 137 610435197 610435061 8.530000e-37 165.0
21 TraesCS5A01G190000 chr1A 89.474 133 11 3 1 131 91498230 91498099 8.530000e-37 165.0
22 TraesCS5A01G190000 chr1A 82.203 118 21 0 271 388 432525622 432525739 6.780000e-18 102.0
23 TraesCS5A01G190000 chr1A 79.167 120 25 0 269 388 521267185 521267066 2.460000e-12 84.2
24 TraesCS5A01G190000 chr7D 88.406 138 13 2 1 137 553828114 553827979 3.070000e-36 163.0
25 TraesCS5A01G190000 chr7D 74.811 397 70 20 2 392 530642794 530643166 6.640000e-33 152.0
26 TraesCS5A01G190000 chr7D 96.000 50 1 1 1721 1769 136014861 136014812 3.180000e-11 80.5
27 TraesCS5A01G190000 chrUn 88.321 137 13 3 1 135 97635615 97635750 1.100000e-35 161.0
28 TraesCS5A01G190000 chr2B 88.722 133 13 2 1 131 794323487 794323355 1.100000e-35 161.0
29 TraesCS5A01G190000 chr2A 87.770 139 14 3 1 137 673996032 673996169 3.970000e-35 159.0
30 TraesCS5A01G190000 chr2A 87.681 138 15 2 1 137 686639807 686639671 3.970000e-35 159.0
31 TraesCS5A01G190000 chr1D 87.857 140 12 4 1 137 456135220 456135357 3.970000e-35 159.0
32 TraesCS5A01G190000 chr3A 74.390 410 64 23 1 388 740059096 740058706 1.860000e-28 137.0
33 TraesCS5A01G190000 chr3A 81.395 86 16 0 306 391 123899226 123899141 1.910000e-08 71.3
34 TraesCS5A01G190000 chr2D 81.379 145 25 2 1270 1413 112180728 112180585 2.420000e-22 117.0
35 TraesCS5A01G190000 chr7B 96.000 50 1 1 1721 1769 97974193 97974144 3.180000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G190000 chr5A 394180403 394184239 3836 True 7086.0 7086 100.0000 1 3837 1 chr5A.!!$R1 3836
1 TraesCS5A01G190000 chr5D 303758148 303761485 3337 True 2309.0 3964 90.5775 528 3837 2 chr5D.!!$R1 3309
2 TraesCS5A01G190000 chr5B 348447960 348451422 3462 True 1760.5 3206 94.2415 574 3217 2 chr5B.!!$R1 2643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 431 0.031449 ACAAATTTGTTCACGGGCCG 59.969 50.0 27.06 27.06 38.47 6.13 F
913 1768 0.262876 AAGCCCCATCCCTTGATTCC 59.737 55.0 0.00 0.00 0.00 3.01 F
2019 2909 0.247736 ACCTAGCTTCAACCTCGCAG 59.752 55.0 0.00 0.00 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1423 2281 0.250901 TTTGGAGAAGCAGAGTGGGC 60.251 55.0 0.00 0.00 0.00 5.36 R
2088 2983 0.674581 CGCTGATGCACCTGGAGAAA 60.675 55.0 0.00 0.00 39.64 2.52 R
3230 4146 0.031994 AACGGAGGCAACACATTTGC 59.968 50.0 0.17 0.17 44.22 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.491581 GTGACTCTCGCGGAAAAGA 57.508 52.632 6.13 0.00 0.00 2.52
19 20 1.779569 GTGACTCTCGCGGAAAAGAA 58.220 50.000 6.13 0.00 0.00 2.52
20 21 2.132762 GTGACTCTCGCGGAAAAGAAA 58.867 47.619 6.13 0.00 0.00 2.52
21 22 2.542595 GTGACTCTCGCGGAAAAGAAAA 59.457 45.455 6.13 0.00 0.00 2.29
22 23 3.001939 GTGACTCTCGCGGAAAAGAAAAA 59.998 43.478 6.13 0.00 0.00 1.94
23 24 3.813166 TGACTCTCGCGGAAAAGAAAAAT 59.187 39.130 6.13 0.00 0.00 1.82
24 25 4.992319 TGACTCTCGCGGAAAAGAAAAATA 59.008 37.500 6.13 0.00 0.00 1.40
25 26 5.642063 TGACTCTCGCGGAAAAGAAAAATAT 59.358 36.000 6.13 0.00 0.00 1.28
26 27 6.814644 TGACTCTCGCGGAAAAGAAAAATATA 59.185 34.615 6.13 0.00 0.00 0.86
27 28 7.332430 TGACTCTCGCGGAAAAGAAAAATATAA 59.668 33.333 6.13 0.00 0.00 0.98
28 29 8.036273 ACTCTCGCGGAAAAGAAAAATATAAA 57.964 30.769 6.13 0.00 0.00 1.40
29 30 8.508875 ACTCTCGCGGAAAAGAAAAATATAAAA 58.491 29.630 6.13 0.00 0.00 1.52
30 31 9.337091 CTCTCGCGGAAAAGAAAAATATAAAAA 57.663 29.630 6.13 0.00 0.00 1.94
31 32 9.120422 TCTCGCGGAAAAGAAAAATATAAAAAC 57.880 29.630 6.13 0.00 0.00 2.43
32 33 8.798748 TCGCGGAAAAGAAAAATATAAAAACA 57.201 26.923 6.13 0.00 0.00 2.83
33 34 8.692615 TCGCGGAAAAGAAAAATATAAAAACAC 58.307 29.630 6.13 0.00 0.00 3.32
34 35 7.676826 CGCGGAAAAGAAAAATATAAAAACACG 59.323 33.333 0.00 0.00 0.00 4.49
35 36 8.481641 GCGGAAAAGAAAAATATAAAAACACGT 58.518 29.630 0.00 0.00 0.00 4.49
57 58 3.430333 TTTTTCGTTTCTGAAGGGCAC 57.570 42.857 0.00 0.00 0.00 5.01
58 59 0.941542 TTTCGTTTCTGAAGGGCACG 59.058 50.000 6.11 6.11 0.00 5.34
59 60 0.882927 TTCGTTTCTGAAGGGCACGG 60.883 55.000 11.16 0.00 0.00 4.94
60 61 1.597027 CGTTTCTGAAGGGCACGGT 60.597 57.895 4.82 0.00 0.00 4.83
61 62 1.566018 CGTTTCTGAAGGGCACGGTC 61.566 60.000 4.82 0.00 0.00 4.79
62 63 1.301401 TTTCTGAAGGGCACGGTCG 60.301 57.895 0.00 0.00 0.00 4.79
63 64 2.035237 TTTCTGAAGGGCACGGTCGT 62.035 55.000 0.00 0.00 0.00 4.34
73 74 4.039357 ACGGTCGTGACTCTGGCG 62.039 66.667 0.00 0.00 0.00 5.69
74 75 3.733960 CGGTCGTGACTCTGGCGA 61.734 66.667 0.00 0.00 0.00 5.54
75 76 2.649034 GGTCGTGACTCTGGCGAA 59.351 61.111 0.00 0.00 36.37 4.70
76 77 1.006571 GGTCGTGACTCTGGCGAAA 60.007 57.895 0.00 0.00 36.37 3.46
77 78 0.599204 GGTCGTGACTCTGGCGAAAA 60.599 55.000 0.00 0.00 36.37 2.29
78 79 0.507358 GTCGTGACTCTGGCGAAAAC 59.493 55.000 0.00 0.00 36.37 2.43
79 80 0.103390 TCGTGACTCTGGCGAAAACA 59.897 50.000 0.00 0.00 0.00 2.83
80 81 0.232303 CGTGACTCTGGCGAAAACAC 59.768 55.000 0.00 0.00 0.00 3.32
81 82 1.295792 GTGACTCTGGCGAAAACACA 58.704 50.000 0.00 0.00 0.00 3.72
82 83 1.668751 GTGACTCTGGCGAAAACACAA 59.331 47.619 0.00 0.00 0.00 3.33
83 84 1.668751 TGACTCTGGCGAAAACACAAC 59.331 47.619 0.00 0.00 0.00 3.32
84 85 1.002792 GACTCTGGCGAAAACACAACC 60.003 52.381 0.00 0.00 0.00 3.77
85 86 0.041312 CTCTGGCGAAAACACAACCG 60.041 55.000 0.00 0.00 0.00 4.44
86 87 0.745128 TCTGGCGAAAACACAACCGT 60.745 50.000 0.00 0.00 0.00 4.83
95 96 3.414700 CACAACCGTGCCTCTCGC 61.415 66.667 0.00 0.00 36.06 5.03
113 114 3.944871 CGAAAGCAAAACTGTGGCT 57.055 47.368 0.00 0.00 40.14 4.75
114 115 1.758783 CGAAAGCAAAACTGTGGCTC 58.241 50.000 2.92 0.00 36.76 4.70
115 116 1.334869 CGAAAGCAAAACTGTGGCTCT 59.665 47.619 2.92 0.00 36.76 4.09
116 117 2.603173 CGAAAGCAAAACTGTGGCTCTC 60.603 50.000 2.92 0.00 36.76 3.20
117 118 0.947244 AAGCAAAACTGTGGCTCTCG 59.053 50.000 2.92 0.00 36.76 4.04
118 119 1.081840 GCAAAACTGTGGCTCTCGC 60.082 57.895 0.00 0.00 0.00 5.03
119 120 1.205064 CAAAACTGTGGCTCTCGCG 59.795 57.895 0.00 0.00 36.88 5.87
120 121 1.069090 AAAACTGTGGCTCTCGCGA 59.931 52.632 9.26 9.26 36.88 5.87
121 122 0.531974 AAAACTGTGGCTCTCGCGAA 60.532 50.000 11.33 0.02 36.88 4.70
122 123 0.531974 AAACTGTGGCTCTCGCGAAA 60.532 50.000 11.33 0.00 36.88 3.46
123 124 0.946221 AACTGTGGCTCTCGCGAAAG 60.946 55.000 11.33 7.95 35.53 2.62
124 125 1.080501 CTGTGGCTCTCGCGAAAGA 60.081 57.895 14.93 5.68 31.41 2.52
125 126 0.667487 CTGTGGCTCTCGCGAAAGAA 60.667 55.000 14.93 0.00 31.41 2.52
126 127 0.249699 TGTGGCTCTCGCGAAAGAAA 60.250 50.000 14.93 0.00 36.88 2.52
127 128 0.865769 GTGGCTCTCGCGAAAGAAAA 59.134 50.000 14.93 0.00 36.88 2.29
128 129 1.263217 GTGGCTCTCGCGAAAGAAAAA 59.737 47.619 14.93 0.00 36.88 1.94
150 151 5.897377 AAATACAGATTCCAAAAGGACGG 57.103 39.130 0.00 0.00 0.00 4.79
151 152 2.951229 ACAGATTCCAAAAGGACGGT 57.049 45.000 0.00 0.00 0.00 4.83
152 153 2.779506 ACAGATTCCAAAAGGACGGTC 58.220 47.619 0.00 0.00 0.00 4.79
153 154 1.732259 CAGATTCCAAAAGGACGGTCG 59.268 52.381 1.43 0.00 0.00 4.79
154 155 1.346722 AGATTCCAAAAGGACGGTCGT 59.653 47.619 1.43 0.00 0.00 4.34
155 156 1.463444 GATTCCAAAAGGACGGTCGTG 59.537 52.381 3.85 0.00 0.00 4.35
156 157 1.161563 TTCCAAAAGGACGGTCGTGC 61.162 55.000 6.91 6.91 36.69 5.34
157 158 2.613506 CCAAAAGGACGGTCGTGCC 61.614 63.158 11.16 7.46 37.15 5.01
158 159 1.597027 CAAAAGGACGGTCGTGCCT 60.597 57.895 11.16 9.41 37.15 4.75
159 160 1.301479 AAAAGGACGGTCGTGCCTC 60.301 57.895 11.16 0.00 37.15 4.70
160 161 2.035237 AAAAGGACGGTCGTGCCTCA 62.035 55.000 11.16 0.00 37.15 3.86
161 162 2.710724 AAAGGACGGTCGTGCCTCAC 62.711 60.000 11.16 0.00 37.15 3.51
170 171 3.637714 GTGCCTCACGCGAAAGAA 58.362 55.556 15.93 0.00 42.08 2.52
171 172 1.938861 GTGCCTCACGCGAAAGAAA 59.061 52.632 15.93 0.00 42.08 2.52
172 173 0.306533 GTGCCTCACGCGAAAGAAAA 59.693 50.000 15.93 0.00 42.08 2.29
173 174 1.018148 TGCCTCACGCGAAAGAAAAA 58.982 45.000 15.93 0.00 42.08 1.94
213 214 3.336138 AAAAACAAGGCCGGTGAAAAA 57.664 38.095 15.55 0.00 0.00 1.94
214 215 2.303163 AAACAAGGCCGGTGAAAAAC 57.697 45.000 15.55 0.00 0.00 2.43
215 216 1.187087 AACAAGGCCGGTGAAAAACA 58.813 45.000 15.55 0.00 0.00 2.83
216 217 1.187087 ACAAGGCCGGTGAAAAACAA 58.813 45.000 15.55 0.00 0.00 2.83
217 218 1.550976 ACAAGGCCGGTGAAAAACAAA 59.449 42.857 15.55 0.00 0.00 2.83
218 219 2.028020 ACAAGGCCGGTGAAAAACAAAA 60.028 40.909 15.55 0.00 0.00 2.44
219 220 3.003480 CAAGGCCGGTGAAAAACAAAAA 58.997 40.909 1.90 0.00 0.00 1.94
220 221 3.552132 AGGCCGGTGAAAAACAAAAAT 57.448 38.095 1.90 0.00 0.00 1.82
221 222 3.202097 AGGCCGGTGAAAAACAAAAATG 58.798 40.909 1.90 0.00 0.00 2.32
222 223 2.939756 GGCCGGTGAAAAACAAAAATGT 59.060 40.909 1.90 0.00 0.00 2.71
223 224 3.001838 GGCCGGTGAAAAACAAAAATGTC 59.998 43.478 1.90 0.00 0.00 3.06
224 225 3.619038 GCCGGTGAAAAACAAAAATGTCA 59.381 39.130 1.90 0.00 0.00 3.58
225 226 4.093556 GCCGGTGAAAAACAAAAATGTCAA 59.906 37.500 1.90 0.00 0.00 3.18
226 227 5.390991 GCCGGTGAAAAACAAAAATGTCAAA 60.391 36.000 1.90 0.00 0.00 2.69
227 228 6.603095 CCGGTGAAAAACAAAAATGTCAAAA 58.397 32.000 0.00 0.00 0.00 2.44
228 229 7.078228 CCGGTGAAAAACAAAAATGTCAAAAA 58.922 30.769 0.00 0.00 0.00 1.94
264 265 8.455598 AACCCATTTAAATATTCGAAAACACG 57.544 30.769 0.00 0.00 0.00 4.49
265 266 7.595604 ACCCATTTAAATATTCGAAAACACGT 58.404 30.769 0.00 0.00 34.70 4.49
266 267 7.539366 ACCCATTTAAATATTCGAAAACACGTG 59.461 33.333 15.48 15.48 34.70 4.49
267 268 7.380320 CCATTTAAATATTCGAAAACACGTGC 58.620 34.615 17.22 0.00 34.70 5.34
268 269 7.061210 CCATTTAAATATTCGAAAACACGTGCA 59.939 33.333 17.22 0.00 34.70 4.57
269 270 7.541743 TTTAAATATTCGAAAACACGTGCAG 57.458 32.000 17.22 2.65 34.70 4.41
270 271 5.351233 AAATATTCGAAAACACGTGCAGA 57.649 34.783 17.22 5.20 34.70 4.26
271 272 5.351233 AATATTCGAAAACACGTGCAGAA 57.649 34.783 17.22 13.88 34.70 3.02
272 273 3.684103 ATTCGAAAACACGTGCAGAAA 57.316 38.095 17.22 3.30 34.70 2.52
273 274 3.473093 TTCGAAAACACGTGCAGAAAA 57.527 38.095 17.22 0.40 34.70 2.29
274 275 3.473093 TCGAAAACACGTGCAGAAAAA 57.527 38.095 17.22 0.00 34.70 1.94
319 320 4.513275 CGTGACACGTGGCAAATG 57.487 55.556 28.96 15.59 36.74 2.32
320 321 1.938125 CGTGACACGTGGCAAATGA 59.062 52.632 28.96 0.00 36.74 2.57
321 322 0.384230 CGTGACACGTGGCAAATGAC 60.384 55.000 28.96 12.68 36.74 3.06
322 323 0.944386 GTGACACGTGGCAAATGACT 59.056 50.000 28.96 0.00 32.99 3.41
323 324 0.943673 TGACACGTGGCAAATGACTG 59.056 50.000 24.82 0.00 0.00 3.51
324 325 1.225855 GACACGTGGCAAATGACTGA 58.774 50.000 18.77 0.00 0.00 3.41
325 326 1.806542 GACACGTGGCAAATGACTGAT 59.193 47.619 18.77 0.00 0.00 2.90
326 327 3.000041 GACACGTGGCAAATGACTGATA 59.000 45.455 18.77 0.00 0.00 2.15
327 328 3.002791 ACACGTGGCAAATGACTGATAG 58.997 45.455 21.57 0.00 0.00 2.08
328 329 2.009774 ACGTGGCAAATGACTGATAGC 58.990 47.619 0.00 0.00 0.00 2.97
329 330 1.004610 CGTGGCAAATGACTGATAGCG 60.005 52.381 0.00 0.00 0.00 4.26
330 331 2.279741 GTGGCAAATGACTGATAGCGA 58.720 47.619 0.00 0.00 0.00 4.93
331 332 2.286294 GTGGCAAATGACTGATAGCGAG 59.714 50.000 0.00 0.00 0.00 5.03
332 333 2.093500 TGGCAAATGACTGATAGCGAGT 60.093 45.455 0.00 0.00 0.00 4.18
333 334 2.541762 GGCAAATGACTGATAGCGAGTC 59.458 50.000 0.00 0.00 40.34 3.36
339 340 4.718940 TGACTGATAGCGAGTCAAATGA 57.281 40.909 9.75 0.00 45.38 2.57
340 341 4.424626 TGACTGATAGCGAGTCAAATGAC 58.575 43.478 5.40 5.40 45.38 3.06
341 342 4.082245 TGACTGATAGCGAGTCAAATGACA 60.082 41.667 15.38 0.00 45.38 3.58
342 343 6.130778 TGACTGATAGCGAGTCAAATGACAC 61.131 44.000 15.38 8.42 45.38 3.67
343 344 8.236179 TGACTGATAGCGAGTCAAATGACACT 62.236 42.308 15.38 11.34 45.38 3.55
352 353 3.568538 GTCAAATGACACTGACCATTGC 58.431 45.455 8.63 0.00 44.18 3.56
353 354 2.226200 TCAAATGACACTGACCATTGCG 59.774 45.455 0.00 0.00 33.70 4.85
354 355 2.183478 AATGACACTGACCATTGCGA 57.817 45.000 0.00 0.00 32.34 5.10
355 356 1.730501 ATGACACTGACCATTGCGAG 58.269 50.000 0.00 0.00 0.00 5.03
356 357 0.320683 TGACACTGACCATTGCGAGG 60.321 55.000 0.00 0.00 0.00 4.63
357 358 1.639298 GACACTGACCATTGCGAGGC 61.639 60.000 0.00 0.00 0.00 4.70
358 359 1.376424 CACTGACCATTGCGAGGCT 60.376 57.895 0.00 0.00 0.00 4.58
359 360 1.078848 ACTGACCATTGCGAGGCTC 60.079 57.895 3.87 3.87 0.00 4.70
360 361 1.220206 CTGACCATTGCGAGGCTCT 59.780 57.895 13.50 0.00 0.00 4.09
361 362 0.809241 CTGACCATTGCGAGGCTCTC 60.809 60.000 13.50 5.04 0.00 3.20
370 371 4.393308 GAGGCTCTCGAAGAAGCG 57.607 61.111 7.40 0.00 40.01 4.68
371 372 1.876263 GAGGCTCTCGAAGAAGCGC 60.876 63.158 7.40 0.00 40.01 5.92
372 373 2.183046 GGCTCTCGAAGAAGCGCT 59.817 61.111 2.64 2.64 40.01 5.92
373 374 1.876263 GGCTCTCGAAGAAGCGCTC 60.876 63.158 12.06 4.30 40.01 5.03
374 375 2.220887 GCTCTCGAAGAAGCGCTCG 61.221 63.158 12.06 10.94 34.09 5.03
375 376 1.135731 CTCTCGAAGAAGCGCTCGT 59.864 57.895 12.06 2.20 34.09 4.18
376 377 0.455295 CTCTCGAAGAAGCGCTCGTT 60.455 55.000 12.06 7.24 34.09 3.85
377 378 0.800631 TCTCGAAGAAGCGCTCGTTA 59.199 50.000 12.06 0.00 34.09 3.18
378 379 1.198408 TCTCGAAGAAGCGCTCGTTAA 59.802 47.619 12.06 0.00 34.09 2.01
379 380 1.317904 CTCGAAGAAGCGCTCGTTAAC 59.682 52.381 12.06 0.00 34.09 2.01
380 381 1.068748 TCGAAGAAGCGCTCGTTAACT 60.069 47.619 12.06 0.00 0.00 2.24
381 382 2.160219 TCGAAGAAGCGCTCGTTAACTA 59.840 45.455 12.06 0.00 0.00 2.24
382 383 2.526688 CGAAGAAGCGCTCGTTAACTAG 59.473 50.000 12.06 3.24 0.00 2.57
383 384 3.500014 GAAGAAGCGCTCGTTAACTAGT 58.500 45.455 12.06 0.00 0.00 2.57
384 385 2.864968 AGAAGCGCTCGTTAACTAGTG 58.135 47.619 12.06 14.56 0.00 2.74
385 386 1.918609 GAAGCGCTCGTTAACTAGTGG 59.081 52.381 12.06 8.71 0.00 4.00
386 387 0.458025 AGCGCTCGTTAACTAGTGGC 60.458 55.000 18.92 16.09 0.00 5.01
387 388 0.458025 GCGCTCGTTAACTAGTGGCT 60.458 55.000 18.92 0.00 0.00 4.75
388 389 1.269166 CGCTCGTTAACTAGTGGCTG 58.731 55.000 11.77 0.00 0.00 4.85
389 390 1.000145 GCTCGTTAACTAGTGGCTGC 59.000 55.000 8.74 0.00 0.00 5.25
390 391 1.404315 GCTCGTTAACTAGTGGCTGCT 60.404 52.381 8.74 0.00 0.00 4.24
391 392 2.531206 CTCGTTAACTAGTGGCTGCTC 58.469 52.381 3.71 0.00 0.00 4.26
392 393 1.203994 TCGTTAACTAGTGGCTGCTCC 59.796 52.381 3.71 0.00 0.00 4.70
393 394 1.067142 CGTTAACTAGTGGCTGCTCCA 60.067 52.381 3.71 0.00 44.18 3.86
400 401 2.118076 TGGCTGCTCCAAAAGGGG 59.882 61.111 0.00 0.00 43.21 4.79
401 402 2.440599 GGCTGCTCCAAAAGGGGA 59.559 61.111 0.00 0.00 37.22 4.81
402 403 1.000866 GGCTGCTCCAAAAGGGGAT 59.999 57.895 0.00 0.00 36.09 3.85
403 404 0.615827 GGCTGCTCCAAAAGGGGATT 60.616 55.000 0.00 0.00 36.09 3.01
404 405 0.533951 GCTGCTCCAAAAGGGGATTG 59.466 55.000 0.00 0.00 36.09 2.67
406 407 0.252193 TGCTCCAAAAGGGGATTGGG 60.252 55.000 5.54 0.00 45.97 4.12
407 408 3.305181 CTCCAAAAGGGGATTGGGG 57.695 57.895 5.54 0.00 45.97 4.96
408 409 0.325577 CTCCAAAAGGGGATTGGGGG 60.326 60.000 5.54 0.00 43.44 5.40
409 410 1.995066 CCAAAAGGGGATTGGGGGC 60.995 63.158 0.00 0.00 42.95 5.80
410 411 1.229464 CAAAAGGGGATTGGGGGCA 60.229 57.895 0.00 0.00 0.00 5.36
411 412 0.839853 CAAAAGGGGATTGGGGGCAA 60.840 55.000 0.00 0.00 0.00 4.52
412 413 0.840288 AAAAGGGGATTGGGGGCAAC 60.840 55.000 0.00 0.00 0.00 4.17
413 414 2.042279 AAAGGGGATTGGGGGCAACA 62.042 55.000 0.00 0.00 39.74 3.33
414 415 2.042279 AAGGGGATTGGGGGCAACAA 62.042 55.000 0.00 0.00 39.74 2.83
415 416 1.537643 GGGGATTGGGGGCAACAAA 60.538 57.895 0.00 0.00 39.74 2.83
416 417 0.913934 GGGGATTGGGGGCAACAAAT 60.914 55.000 0.00 0.00 39.74 2.32
417 418 0.991146 GGGATTGGGGGCAACAAATT 59.009 50.000 0.00 0.00 39.74 1.82
418 419 1.354031 GGGATTGGGGGCAACAAATTT 59.646 47.619 0.00 0.00 39.74 1.82
419 420 2.435422 GGATTGGGGGCAACAAATTTG 58.565 47.619 16.67 16.67 39.74 2.32
420 421 2.224744 GGATTGGGGGCAACAAATTTGT 60.225 45.455 18.13 18.13 44.72 2.83
429 430 3.978460 ACAAATTTGTTCACGGGCC 57.022 47.368 18.13 0.00 38.47 5.80
430 431 0.031449 ACAAATTTGTTCACGGGCCG 59.969 50.000 27.06 27.06 38.47 6.13
431 432 0.312416 CAAATTTGTTCACGGGCCGA 59.688 50.000 35.78 8.46 0.00 5.54
432 433 0.596082 AAATTTGTTCACGGGCCGAG 59.404 50.000 35.78 26.54 0.00 4.63
433 434 1.862602 AATTTGTTCACGGGCCGAGC 61.863 55.000 35.78 18.61 0.00 5.03
464 465 2.673523 GCCACTGCCCATCTCAGT 59.326 61.111 0.00 0.00 44.87 3.41
465 466 1.001641 GCCACTGCCCATCTCAGTT 60.002 57.895 0.00 0.00 42.38 3.16
466 467 0.610232 GCCACTGCCCATCTCAGTTT 60.610 55.000 0.00 0.00 42.38 2.66
467 468 1.915141 CCACTGCCCATCTCAGTTTT 58.085 50.000 0.00 0.00 42.38 2.43
468 469 1.815003 CCACTGCCCATCTCAGTTTTC 59.185 52.381 0.00 0.00 42.38 2.29
469 470 1.466167 CACTGCCCATCTCAGTTTTCG 59.534 52.381 0.00 0.00 42.38 3.46
470 471 1.072331 ACTGCCCATCTCAGTTTTCGT 59.928 47.619 0.00 0.00 41.61 3.85
471 472 1.734465 CTGCCCATCTCAGTTTTCGTC 59.266 52.381 0.00 0.00 0.00 4.20
472 473 0.721718 GCCCATCTCAGTTTTCGTCG 59.278 55.000 0.00 0.00 0.00 5.12
473 474 1.939838 GCCCATCTCAGTTTTCGTCGT 60.940 52.381 0.00 0.00 0.00 4.34
474 475 1.726791 CCCATCTCAGTTTTCGTCGTG 59.273 52.381 0.00 0.00 0.00 4.35
475 476 2.609491 CCCATCTCAGTTTTCGTCGTGA 60.609 50.000 0.00 0.00 0.00 4.35
476 477 2.408704 CCATCTCAGTTTTCGTCGTGAC 59.591 50.000 0.00 0.00 0.00 3.67
477 478 3.309388 CATCTCAGTTTTCGTCGTGACT 58.691 45.455 0.00 0.00 0.00 3.41
478 479 3.431922 TCTCAGTTTTCGTCGTGACTT 57.568 42.857 0.00 0.00 0.00 3.01
479 480 3.113322 TCTCAGTTTTCGTCGTGACTTG 58.887 45.455 0.00 0.00 0.00 3.16
480 481 3.113322 CTCAGTTTTCGTCGTGACTTGA 58.887 45.455 0.00 0.00 0.00 3.02
481 482 3.113322 TCAGTTTTCGTCGTGACTTGAG 58.887 45.455 0.00 0.00 0.00 3.02
482 483 1.859080 AGTTTTCGTCGTGACTTGAGC 59.141 47.619 0.00 0.00 0.00 4.26
483 484 0.850217 TTTTCGTCGTGACTTGAGCG 59.150 50.000 0.00 0.00 0.00 5.03
484 485 0.937699 TTTCGTCGTGACTTGAGCGG 60.938 55.000 0.00 0.00 0.00 5.52
485 486 2.050351 CGTCGTGACTTGAGCGGT 60.050 61.111 0.00 0.00 0.00 5.68
486 487 1.208358 CGTCGTGACTTGAGCGGTA 59.792 57.895 0.00 0.00 0.00 4.02
487 488 0.386352 CGTCGTGACTTGAGCGGTAA 60.386 55.000 0.00 0.00 0.00 2.85
488 489 1.058404 GTCGTGACTTGAGCGGTAAC 58.942 55.000 0.00 0.00 0.00 2.50
489 490 0.669619 TCGTGACTTGAGCGGTAACA 59.330 50.000 0.00 0.00 0.00 2.41
490 491 1.060713 CGTGACTTGAGCGGTAACAG 58.939 55.000 0.00 0.00 0.00 3.16
491 492 0.790814 GTGACTTGAGCGGTAACAGC 59.209 55.000 0.00 0.00 36.55 4.40
492 493 0.666274 TGACTTGAGCGGTAACAGCG 60.666 55.000 0.00 0.00 42.73 5.18
500 501 3.110178 GGTAACAGCGCGCGAGTT 61.110 61.111 34.64 34.64 0.00 3.01
501 502 2.664436 GGTAACAGCGCGCGAGTTT 61.664 57.895 36.37 25.17 0.00 2.66
502 503 1.203313 GTAACAGCGCGCGAGTTTT 59.797 52.632 36.37 23.13 0.00 2.43
503 504 0.435769 GTAACAGCGCGCGAGTTTTA 59.564 50.000 36.37 23.59 0.00 1.52
504 505 1.136557 GTAACAGCGCGCGAGTTTTAA 60.137 47.619 36.37 23.02 0.00 1.52
505 506 0.383860 AACAGCGCGCGAGTTTTAAC 60.384 50.000 37.18 13.39 0.00 2.01
506 507 1.219522 ACAGCGCGCGAGTTTTAACT 61.220 50.000 37.18 15.80 43.16 2.24
525 526 9.581099 TTTTAACTCTTTGTTTTGCTCTAAAGG 57.419 29.630 0.00 0.00 39.89 3.11
526 527 8.514330 TTAACTCTTTGTTTTGCTCTAAAGGA 57.486 30.769 0.00 0.00 39.89 3.36
534 535 4.483476 TTTGCTCTAAAGGAAAACGAGC 57.517 40.909 0.00 0.00 45.39 5.03
548 549 4.813296 AAACGAGCTTTAACTCTTGTGG 57.187 40.909 0.00 0.00 34.35 4.17
549 550 3.470645 ACGAGCTTTAACTCTTGTGGT 57.529 42.857 0.00 0.00 34.35 4.16
550 551 4.595762 ACGAGCTTTAACTCTTGTGGTA 57.404 40.909 0.00 0.00 34.35 3.25
551 552 4.557205 ACGAGCTTTAACTCTTGTGGTAG 58.443 43.478 0.00 0.00 34.35 3.18
552 553 4.038883 ACGAGCTTTAACTCTTGTGGTAGT 59.961 41.667 0.00 0.00 34.35 2.73
553 554 5.242393 ACGAGCTTTAACTCTTGTGGTAGTA 59.758 40.000 0.00 0.00 34.35 1.82
554 555 5.572126 CGAGCTTTAACTCTTGTGGTAGTAC 59.428 44.000 0.00 0.00 34.35 2.73
555 556 6.569994 CGAGCTTTAACTCTTGTGGTAGTACT 60.570 42.308 0.00 0.00 34.35 2.73
556 557 7.361542 CGAGCTTTAACTCTTGTGGTAGTACTA 60.362 40.741 0.00 0.00 34.35 1.82
557 558 7.600960 AGCTTTAACTCTTGTGGTAGTACTAC 58.399 38.462 22.53 22.53 35.40 2.73
558 559 7.450944 AGCTTTAACTCTTGTGGTAGTACTACT 59.549 37.037 27.71 10.96 36.36 2.57
559 560 8.734386 GCTTTAACTCTTGTGGTAGTACTACTA 58.266 37.037 27.71 21.66 36.36 1.82
572 573 5.911378 AGTACTACTACTACCAACTTGCC 57.089 43.478 0.00 0.00 30.81 4.52
601 602 3.347077 AGCTGGATCTGACCAAGAAAG 57.653 47.619 0.00 0.00 38.79 2.62
817 1672 4.282703 TCGCTTCCCTCCACCTATAAATAC 59.717 45.833 0.00 0.00 0.00 1.89
822 1677 2.027469 CCTCCACCTATAAATACCCCGC 60.027 54.545 0.00 0.00 0.00 6.13
859 1714 4.990426 CACAAAACACCAATCATTTCCTCC 59.010 41.667 0.00 0.00 0.00 4.30
893 1748 0.598065 CCTTTTCTGCCTTCCAACCG 59.402 55.000 0.00 0.00 0.00 4.44
913 1768 0.262876 AAGCCCCATCCCTTGATTCC 59.737 55.000 0.00 0.00 0.00 3.01
917 1772 1.203100 CCCCATCCCTTGATTCCATCC 60.203 57.143 0.00 0.00 0.00 3.51
934 1789 1.113517 TCCATCGTTCGGGATCCTCC 61.114 60.000 12.58 0.00 35.23 4.30
935 1790 1.115930 CCATCGTTCGGGATCCTCCT 61.116 60.000 12.58 0.00 36.57 3.69
936 1791 0.315568 CATCGTTCGGGATCCTCCTC 59.684 60.000 12.58 0.00 36.57 3.71
999 1857 2.328099 CCTTGGACTCGTGCTTGGC 61.328 63.158 0.00 0.00 0.00 4.52
1092 1950 1.914764 GTCCCTGTTCCCGTACCCA 60.915 63.158 0.00 0.00 0.00 4.51
1423 2281 4.087892 CGGTGAGCCACTCCCCTG 62.088 72.222 5.48 0.00 34.40 4.45
1430 2288 3.721706 CCACTCCCCTGCCCACTC 61.722 72.222 0.00 0.00 0.00 3.51
1431 2289 2.608988 CACTCCCCTGCCCACTCT 60.609 66.667 0.00 0.00 0.00 3.24
1432 2290 2.608988 ACTCCCCTGCCCACTCTG 60.609 66.667 0.00 0.00 0.00 3.35
1434 2292 4.664267 TCCCCTGCCCACTCTGCT 62.664 66.667 0.00 0.00 0.00 4.24
1435 2293 3.655211 CCCCTGCCCACTCTGCTT 61.655 66.667 0.00 0.00 0.00 3.91
1436 2294 2.045536 CCCTGCCCACTCTGCTTC 60.046 66.667 0.00 0.00 0.00 3.86
1437 2295 2.600729 CCCTGCCCACTCTGCTTCT 61.601 63.158 0.00 0.00 0.00 2.85
1439 2297 1.078567 CTGCCCACTCTGCTTCTCC 60.079 63.158 0.00 0.00 0.00 3.71
1440 2298 1.834856 CTGCCCACTCTGCTTCTCCA 61.835 60.000 0.00 0.00 0.00 3.86
1441 2299 1.376466 GCCCACTCTGCTTCTCCAA 59.624 57.895 0.00 0.00 0.00 3.53
1442 2300 0.250901 GCCCACTCTGCTTCTCCAAA 60.251 55.000 0.00 0.00 0.00 3.28
1444 2302 2.800250 CCCACTCTGCTTCTCCAAATT 58.200 47.619 0.00 0.00 0.00 1.82
1445 2303 3.160269 CCCACTCTGCTTCTCCAAATTT 58.840 45.455 0.00 0.00 0.00 1.82
1446 2304 3.192212 CCCACTCTGCTTCTCCAAATTTC 59.808 47.826 0.00 0.00 0.00 2.17
1447 2305 3.822735 CCACTCTGCTTCTCCAAATTTCA 59.177 43.478 0.00 0.00 0.00 2.69
1452 2323 5.569355 TCTGCTTCTCCAAATTTCATACCA 58.431 37.500 0.00 0.00 0.00 3.25
1469 2347 1.748122 CACCATGCACCTCTGCTCC 60.748 63.158 0.00 0.00 44.57 4.70
1471 2349 2.513204 CATGCACCTCTGCTCCCG 60.513 66.667 0.00 0.00 44.57 5.14
1496 2374 4.791163 CCTGCGGACACGTTATTAATTTTG 59.209 41.667 0.00 0.00 43.45 2.44
1502 2380 7.253190 GCGGACACGTTATTAATTTTGTGATTC 60.253 37.037 16.02 7.61 43.45 2.52
1505 2383 7.808672 ACACGTTATTAATTTTGTGATTCGGA 58.191 30.769 16.02 0.00 0.00 4.55
1591 2472 3.475774 GTGCCGCGACAAGGTACG 61.476 66.667 8.23 0.00 34.85 3.67
1626 2516 1.031571 TGAACTCCCATTGCCATCGC 61.032 55.000 0.00 0.00 0.00 4.58
1811 2701 3.387374 TGAATTGATGCTCCTCTCCTCTC 59.613 47.826 0.00 0.00 0.00 3.20
1824 2714 1.543802 CTCCTCTCGCCCATCATCTAC 59.456 57.143 0.00 0.00 0.00 2.59
1826 2716 1.543802 CCTCTCGCCCATCATCTACTC 59.456 57.143 0.00 0.00 0.00 2.59
1830 2720 2.752354 CTCGCCCATCATCTACTCCTAG 59.248 54.545 0.00 0.00 0.00 3.02
1836 2726 4.569653 CCCATCATCTACTCCTAGCTAGCT 60.570 50.000 23.12 23.12 0.00 3.32
1857 2747 0.387878 CTAGCATGGTCGCTCGATCC 60.388 60.000 0.00 2.63 42.62 3.36
1865 2755 2.088423 GGTCGCTCGATCCATCTATCT 58.912 52.381 0.00 0.00 0.00 1.98
1905 2795 4.396166 GGGCACGAATATTCCCATATCTTG 59.604 45.833 9.87 0.00 38.62 3.02
1926 2816 5.124036 TGGCAAACTAAAGGCATATACCT 57.876 39.130 0.00 0.00 43.91 3.08
2019 2909 0.247736 ACCTAGCTTCAACCTCGCAG 59.752 55.000 0.00 0.00 0.00 5.18
2047 2937 3.005554 ACTCATTCGCACCAGAAATCTG 58.994 45.455 3.37 3.37 43.40 2.90
2060 2955 5.619625 CAGAAATCTGGTCAGAAGAAACC 57.380 43.478 4.67 0.00 41.36 3.27
2105 3000 1.808945 GTGTTTCTCCAGGTGCATCAG 59.191 52.381 0.00 0.00 0.00 2.90
2215 3110 3.885521 GGTAGGCGACGGACGGAG 61.886 72.222 1.66 0.00 42.83 4.63
2329 3234 1.191535 ACCACCGCTAGTGCTCATAA 58.808 50.000 0.00 0.00 45.83 1.90
2330 3235 1.762957 ACCACCGCTAGTGCTCATAAT 59.237 47.619 0.00 0.00 45.83 1.28
2331 3236 2.963101 ACCACCGCTAGTGCTCATAATA 59.037 45.455 0.00 0.00 45.83 0.98
2335 3240 5.807520 CCACCGCTAGTGCTCATAATATAAG 59.192 44.000 0.00 0.00 45.83 1.73
2420 3325 1.398739 ACTAGTGACTGATCAGCGTCG 59.601 52.381 22.83 8.89 34.75 5.12
2430 3335 2.294233 TGATCAGCGTCGATGATGATGA 59.706 45.455 35.72 27.71 44.43 2.92
2614 3521 3.050275 GACTGCCCCAACGTGCTC 61.050 66.667 0.00 0.00 0.00 4.26
2846 3753 4.175489 ACGCCTGATCGGACGACG 62.175 66.667 17.64 10.41 46.11 5.12
2919 3828 7.318141 ACGTGTAGCTTAGCTAGTTAATGAAA 58.682 34.615 14.87 0.00 42.11 2.69
2920 3829 7.816031 ACGTGTAGCTTAGCTAGTTAATGAAAA 59.184 33.333 14.87 0.00 42.11 2.29
2921 3830 8.818057 CGTGTAGCTTAGCTAGTTAATGAAAAT 58.182 33.333 14.87 0.00 42.11 1.82
2924 3833 7.809546 AGCTTAGCTAGTTAATGAAAATCCC 57.190 36.000 4.30 0.00 36.99 3.85
2925 3834 6.773200 AGCTTAGCTAGTTAATGAAAATCCCC 59.227 38.462 4.30 0.00 36.99 4.81
2926 3835 6.773200 GCTTAGCTAGTTAATGAAAATCCCCT 59.227 38.462 0.00 0.00 0.00 4.79
2927 3836 7.255277 GCTTAGCTAGTTAATGAAAATCCCCTG 60.255 40.741 0.00 0.00 0.00 4.45
2928 3837 4.889995 AGCTAGTTAATGAAAATCCCCTGC 59.110 41.667 0.00 0.00 0.00 4.85
2929 3838 4.889995 GCTAGTTAATGAAAATCCCCTGCT 59.110 41.667 0.00 0.00 0.00 4.24
2987 3896 4.441217 GGATGGGAAGAAGGAACGTACTAC 60.441 50.000 0.00 0.00 0.00 2.73
2998 3907 1.870901 CGTACTACGGCGAACCTGC 60.871 63.158 16.62 0.00 38.08 4.85
3038 3953 6.293735 CCACATGTTGTGTTCTAATTAACCGT 60.294 38.462 0.00 0.00 46.45 4.83
3049 3964 8.562052 TGTTCTAATTAACCGTCCTTCTTTTTC 58.438 33.333 0.00 0.00 0.00 2.29
3133 4048 3.052869 AGGGGAGGAACCATGGAATAAAC 60.053 47.826 21.47 4.18 41.20 2.01
3143 4058 8.314021 GGAACCATGGAATAAACAAAGAGAAAT 58.686 33.333 21.47 0.00 0.00 2.17
3205 4121 2.187707 GCGCACACCATCATCAAAATC 58.812 47.619 0.30 0.00 0.00 2.17
3230 4146 8.615211 TCTGTTTCAATTAATCAATCGATGAGG 58.385 33.333 0.00 0.00 42.53 3.86
3231 4147 7.195646 TGTTTCAATTAATCAATCGATGAGGC 58.804 34.615 0.00 0.00 42.53 4.70
3232 4148 6.940831 TTCAATTAATCAATCGATGAGGCA 57.059 33.333 0.00 0.00 42.53 4.75
3233 4149 6.940831 TCAATTAATCAATCGATGAGGCAA 57.059 33.333 0.00 0.00 42.53 4.52
3238 4154 4.563337 ATCAATCGATGAGGCAAATGTG 57.437 40.909 0.00 0.00 42.53 3.21
3251 4167 2.393764 CAAATGTGTTGCCTCCGTTTC 58.606 47.619 0.00 0.00 0.00 2.78
3261 4177 5.163499 TGTTGCCTCCGTTTCAAAAACTATT 60.163 36.000 1.55 0.00 0.00 1.73
3288 4204 6.192234 ACACTACACTACAATCTTACGAGG 57.808 41.667 0.00 0.00 0.00 4.63
3307 4223 4.207224 CGAGGTCATGTTATTCGTAAGCTG 59.793 45.833 0.00 0.00 37.18 4.24
3308 4224 5.086104 AGGTCATGTTATTCGTAAGCTGT 57.914 39.130 0.00 0.00 37.18 4.40
3309 4225 6.216801 AGGTCATGTTATTCGTAAGCTGTA 57.783 37.500 0.00 0.00 37.18 2.74
3310 4226 6.817184 AGGTCATGTTATTCGTAAGCTGTAT 58.183 36.000 0.00 0.00 37.18 2.29
3311 4227 7.272978 AGGTCATGTTATTCGTAAGCTGTATT 58.727 34.615 0.00 0.00 37.18 1.89
3318 4268 9.767684 TGTTATTCGTAAGCTGTATTGAAAATG 57.232 29.630 0.00 0.00 37.18 2.32
3319 4269 9.769093 GTTATTCGTAAGCTGTATTGAAAATGT 57.231 29.630 0.00 0.00 37.18 2.71
3343 4293 2.403252 AATTCGATCTTTCTGGCCGT 57.597 45.000 0.00 0.00 0.00 5.68
3393 4343 6.867519 TTTCTTATTTCATCCTTTTCCCCC 57.132 37.500 0.00 0.00 0.00 5.40
3407 4357 2.978824 CCCCCGCTTCTTCTCGAA 59.021 61.111 0.00 0.00 0.00 3.71
3432 4384 3.654414 GTCTTTTTCCTCTTGCTCTCGA 58.346 45.455 0.00 0.00 0.00 4.04
3433 4385 4.249661 GTCTTTTTCCTCTTGCTCTCGAT 58.750 43.478 0.00 0.00 0.00 3.59
3434 4386 4.328712 GTCTTTTTCCTCTTGCTCTCGATC 59.671 45.833 0.00 0.00 0.00 3.69
3435 4387 2.568696 TTTCCTCTTGCTCTCGATCG 57.431 50.000 9.36 9.36 0.00 3.69
3505 4457 1.004560 CTTTCTCACTGCCTCGCCA 60.005 57.895 0.00 0.00 0.00 5.69
3551 4517 0.179054 GCCATTCCTCTAACCCCGAC 60.179 60.000 0.00 0.00 0.00 4.79
3556 4522 0.708802 TCCTCTAACCCCGACCTCTT 59.291 55.000 0.00 0.00 0.00 2.85
3557 4523 1.112950 CCTCTAACCCCGACCTCTTC 58.887 60.000 0.00 0.00 0.00 2.87
3588 4556 4.643387 ACCCTGCGCACCTGAACC 62.643 66.667 5.66 0.00 0.00 3.62
3591 4559 1.973281 CCTGCGCACCTGAACCAAT 60.973 57.895 5.66 0.00 0.00 3.16
3702 4670 0.452184 AATCGATCGTCACGAGCTGT 59.548 50.000 14.45 0.00 40.26 4.40
3713 4681 1.016130 ACGAGCTGTGAATTCAGGCG 61.016 55.000 20.52 15.98 36.12 5.52
3720 4688 3.325870 CTGTGAATTCAGGCGACTTACA 58.674 45.455 8.80 0.00 40.21 2.41
3764 4732 7.315142 ACAAATTTATGTGTAGTGCATCCAAG 58.685 34.615 0.00 0.00 30.82 3.61
3772 4740 1.742761 AGTGCATCCAAGATTCCGTG 58.257 50.000 0.00 0.00 0.00 4.94
3773 4741 0.099436 GTGCATCCAAGATTCCGTGC 59.901 55.000 0.00 0.00 0.00 5.34
3805 4777 0.671472 CCGAGTGAACTGCATGCAGA 60.671 55.000 45.50 26.43 46.30 4.26
3806 4778 1.366679 CGAGTGAACTGCATGCAGAT 58.633 50.000 45.50 37.44 46.30 2.90
3807 4779 1.326852 CGAGTGAACTGCATGCAGATC 59.673 52.381 45.50 41.12 46.30 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.779569 TTCTTTTCCGCGAGAGTCAC 58.220 50.000 8.23 0.00 0.00 3.67
1 2 2.519377 TTTCTTTTCCGCGAGAGTCA 57.481 45.000 8.23 0.00 0.00 3.41
2 3 3.872560 TTTTTCTTTTCCGCGAGAGTC 57.127 42.857 8.23 0.00 0.00 3.36
3 4 7.605410 TTATATTTTTCTTTTCCGCGAGAGT 57.395 32.000 8.23 0.00 0.00 3.24
4 5 8.889849 TTTTATATTTTTCTTTTCCGCGAGAG 57.110 30.769 8.23 0.00 0.00 3.20
5 6 9.120422 GTTTTTATATTTTTCTTTTCCGCGAGA 57.880 29.630 8.23 0.00 0.00 4.04
6 7 8.907685 TGTTTTTATATTTTTCTTTTCCGCGAG 58.092 29.630 8.23 0.00 0.00 5.03
7 8 8.692615 GTGTTTTTATATTTTTCTTTTCCGCGA 58.307 29.630 8.23 0.00 0.00 5.87
8 9 7.676826 CGTGTTTTTATATTTTTCTTTTCCGCG 59.323 33.333 0.00 0.00 0.00 6.46
9 10 8.481641 ACGTGTTTTTATATTTTTCTTTTCCGC 58.518 29.630 0.00 0.00 0.00 5.54
37 38 2.223386 CGTGCCCTTCAGAAACGAAAAA 60.223 45.455 0.00 0.00 36.38 1.94
38 39 1.332375 CGTGCCCTTCAGAAACGAAAA 59.668 47.619 0.00 0.00 36.38 2.29
39 40 0.941542 CGTGCCCTTCAGAAACGAAA 59.058 50.000 0.00 0.00 36.38 3.46
40 41 0.882927 CCGTGCCCTTCAGAAACGAA 60.883 55.000 6.67 0.00 36.38 3.85
41 42 1.301401 CCGTGCCCTTCAGAAACGA 60.301 57.895 6.67 0.00 36.38 3.85
42 43 1.566018 GACCGTGCCCTTCAGAAACG 61.566 60.000 0.00 0.00 0.00 3.60
43 44 1.566018 CGACCGTGCCCTTCAGAAAC 61.566 60.000 0.00 0.00 0.00 2.78
44 45 1.301401 CGACCGTGCCCTTCAGAAA 60.301 57.895 0.00 0.00 0.00 2.52
45 46 2.342279 CGACCGTGCCCTTCAGAA 59.658 61.111 0.00 0.00 0.00 3.02
46 47 2.915659 ACGACCGTGCCCTTCAGA 60.916 61.111 0.00 0.00 0.00 3.27
47 48 2.738521 CACGACCGTGCCCTTCAG 60.739 66.667 9.69 0.00 39.39 3.02
48 49 3.228017 TCACGACCGTGCCCTTCA 61.228 61.111 16.76 0.00 45.04 3.02
49 50 2.737376 GTCACGACCGTGCCCTTC 60.737 66.667 16.76 2.72 45.04 3.46
50 51 3.222354 GAGTCACGACCGTGCCCTT 62.222 63.158 16.76 3.24 45.04 3.95
51 52 3.681835 GAGTCACGACCGTGCCCT 61.682 66.667 16.76 14.14 45.04 5.19
52 53 3.681835 AGAGTCACGACCGTGCCC 61.682 66.667 16.76 10.06 45.04 5.36
53 54 2.430921 CAGAGTCACGACCGTGCC 60.431 66.667 16.76 6.58 45.04 5.01
54 55 2.430921 CCAGAGTCACGACCGTGC 60.431 66.667 16.76 12.00 45.04 5.34
55 56 2.430921 GCCAGAGTCACGACCGTG 60.431 66.667 15.60 15.60 46.64 4.94
56 57 4.039357 CGCCAGAGTCACGACCGT 62.039 66.667 0.00 0.00 0.00 4.83
57 58 2.742710 TTTCGCCAGAGTCACGACCG 62.743 60.000 2.85 0.00 35.20 4.79
58 59 0.599204 TTTTCGCCAGAGTCACGACC 60.599 55.000 2.85 0.00 35.20 4.79
59 60 0.507358 GTTTTCGCCAGAGTCACGAC 59.493 55.000 2.85 0.00 35.20 4.34
60 61 0.103390 TGTTTTCGCCAGAGTCACGA 59.897 50.000 0.00 0.00 0.00 4.35
61 62 0.232303 GTGTTTTCGCCAGAGTCACG 59.768 55.000 0.00 0.00 0.00 4.35
62 63 1.295792 TGTGTTTTCGCCAGAGTCAC 58.704 50.000 0.00 0.00 0.00 3.67
63 64 1.668751 GTTGTGTTTTCGCCAGAGTCA 59.331 47.619 0.00 0.00 0.00 3.41
64 65 1.002792 GGTTGTGTTTTCGCCAGAGTC 60.003 52.381 0.00 0.00 0.00 3.36
65 66 1.021968 GGTTGTGTTTTCGCCAGAGT 58.978 50.000 0.00 0.00 0.00 3.24
66 67 0.041312 CGGTTGTGTTTTCGCCAGAG 60.041 55.000 0.00 0.00 0.00 3.35
67 68 0.745128 ACGGTTGTGTTTTCGCCAGA 60.745 50.000 0.00 0.00 0.00 3.86
68 69 0.591236 CACGGTTGTGTTTTCGCCAG 60.591 55.000 0.00 0.00 41.34 4.85
69 70 1.429825 CACGGTTGTGTTTTCGCCA 59.570 52.632 0.00 0.00 41.34 5.69
70 71 4.295381 CACGGTTGTGTTTTCGCC 57.705 55.556 0.00 0.00 41.34 5.54
80 81 4.717629 TCGCGAGAGGCACGGTTG 62.718 66.667 3.71 0.00 43.84 3.77
81 82 3.509137 TTTCGCGAGAGGCACGGTT 62.509 57.895 9.59 0.00 43.84 4.44
82 83 3.916392 CTTTCGCGAGAGGCACGGT 62.916 63.158 18.35 0.00 43.84 4.83
83 84 3.181967 CTTTCGCGAGAGGCACGG 61.182 66.667 18.35 0.00 43.84 4.94
84 85 3.843240 GCTTTCGCGAGAGGCACG 61.843 66.667 25.84 3.72 43.84 5.34
85 86 1.841663 TTTGCTTTCGCGAGAGGCAC 61.842 55.000 25.84 11.56 45.26 5.01
86 87 1.163420 TTTTGCTTTCGCGAGAGGCA 61.163 50.000 25.84 23.78 44.45 4.75
87 88 0.726118 GTTTTGCTTTCGCGAGAGGC 60.726 55.000 25.84 21.76 43.69 4.70
88 89 0.868406 AGTTTTGCTTTCGCGAGAGG 59.132 50.000 25.84 13.55 43.69 3.69
89 90 1.261619 ACAGTTTTGCTTTCGCGAGAG 59.738 47.619 21.42 21.42 43.69 3.20
90 91 1.003972 CACAGTTTTGCTTTCGCGAGA 60.004 47.619 9.59 3.35 39.65 4.04
91 92 1.388888 CACAGTTTTGCTTTCGCGAG 58.611 50.000 9.59 0.00 39.65 5.03
92 93 0.028770 CCACAGTTTTGCTTTCGCGA 59.971 50.000 3.71 3.71 39.65 5.87
93 94 1.539776 GCCACAGTTTTGCTTTCGCG 61.540 55.000 0.00 0.00 39.65 5.87
94 95 0.249031 AGCCACAGTTTTGCTTTCGC 60.249 50.000 0.00 0.00 29.17 4.70
95 96 1.334869 AGAGCCACAGTTTTGCTTTCG 59.665 47.619 0.00 0.00 34.99 3.46
96 97 2.603173 CGAGAGCCACAGTTTTGCTTTC 60.603 50.000 0.00 0.00 34.99 2.62
97 98 1.334869 CGAGAGCCACAGTTTTGCTTT 59.665 47.619 0.00 0.00 34.99 3.51
98 99 0.947244 CGAGAGCCACAGTTTTGCTT 59.053 50.000 0.00 0.00 34.99 3.91
99 100 2.621763 CGAGAGCCACAGTTTTGCT 58.378 52.632 0.00 0.00 38.24 3.91
139 140 2.613506 GGCACGACCGTCCTTTTGG 61.614 63.158 0.00 0.00 42.21 3.28
140 141 1.566018 GAGGCACGACCGTCCTTTTG 61.566 60.000 12.35 0.00 46.52 2.44
141 142 1.301479 GAGGCACGACCGTCCTTTT 60.301 57.895 12.35 0.00 46.52 2.27
142 143 2.342648 GAGGCACGACCGTCCTTT 59.657 61.111 12.35 0.00 46.52 3.11
143 144 2.915659 TGAGGCACGACCGTCCTT 60.916 61.111 12.35 0.00 46.52 3.36
144 145 3.681835 GTGAGGCACGACCGTCCT 61.682 66.667 11.38 11.38 46.52 3.85
153 154 0.306533 TTTTCTTTCGCGTGAGGCAC 59.693 50.000 5.77 0.00 43.84 5.01
154 155 1.018148 TTTTTCTTTCGCGTGAGGCA 58.982 45.000 5.77 0.00 43.84 4.75
155 156 3.837669 TTTTTCTTTCGCGTGAGGC 57.162 47.368 5.77 0.00 38.69 4.70
193 194 3.004171 GTTTTTCACCGGCCTTGTTTTT 58.996 40.909 0.00 0.00 0.00 1.94
194 195 2.028020 TGTTTTTCACCGGCCTTGTTTT 60.028 40.909 0.00 0.00 0.00 2.43
195 196 1.550976 TGTTTTTCACCGGCCTTGTTT 59.449 42.857 0.00 0.00 0.00 2.83
196 197 1.187087 TGTTTTTCACCGGCCTTGTT 58.813 45.000 0.00 0.00 0.00 2.83
197 198 1.187087 TTGTTTTTCACCGGCCTTGT 58.813 45.000 0.00 0.00 0.00 3.16
198 199 2.301577 TTTGTTTTTCACCGGCCTTG 57.698 45.000 0.00 0.00 0.00 3.61
199 200 3.336138 TTTTTGTTTTTCACCGGCCTT 57.664 38.095 0.00 0.00 0.00 4.35
200 201 3.202097 CATTTTTGTTTTTCACCGGCCT 58.798 40.909 0.00 0.00 0.00 5.19
201 202 2.939756 ACATTTTTGTTTTTCACCGGCC 59.060 40.909 0.00 0.00 0.00 6.13
202 203 3.619038 TGACATTTTTGTTTTTCACCGGC 59.381 39.130 0.00 0.00 0.00 6.13
203 204 5.786401 TTGACATTTTTGTTTTTCACCGG 57.214 34.783 0.00 0.00 0.00 5.28
238 239 8.917655 CGTGTTTTCGAATATTTAAATGGGTTT 58.082 29.630 11.05 0.00 0.00 3.27
239 240 8.083462 ACGTGTTTTCGAATATTTAAATGGGTT 58.917 29.630 11.05 3.39 34.70 4.11
240 241 7.539366 CACGTGTTTTCGAATATTTAAATGGGT 59.461 33.333 7.58 0.00 34.70 4.51
241 242 7.462200 GCACGTGTTTTCGAATATTTAAATGGG 60.462 37.037 18.38 0.00 34.70 4.00
242 243 7.061210 TGCACGTGTTTTCGAATATTTAAATGG 59.939 33.333 18.38 0.00 34.70 3.16
243 244 7.933560 TGCACGTGTTTTCGAATATTTAAATG 58.066 30.769 18.38 0.00 34.70 2.32
244 245 8.018520 TCTGCACGTGTTTTCGAATATTTAAAT 58.981 29.630 18.38 5.89 34.70 1.40
245 246 7.353497 TCTGCACGTGTTTTCGAATATTTAAA 58.647 30.769 18.38 0.00 34.70 1.52
246 247 6.889494 TCTGCACGTGTTTTCGAATATTTAA 58.111 32.000 18.38 0.00 34.70 1.52
247 248 6.469139 TCTGCACGTGTTTTCGAATATTTA 57.531 33.333 18.38 0.00 34.70 1.40
248 249 5.351233 TCTGCACGTGTTTTCGAATATTT 57.649 34.783 18.38 0.00 34.70 1.40
249 250 5.351233 TTCTGCACGTGTTTTCGAATATT 57.649 34.783 18.38 0.00 34.70 1.28
250 251 5.351233 TTTCTGCACGTGTTTTCGAATAT 57.649 34.783 18.38 0.00 34.70 1.28
251 252 4.797693 TTTCTGCACGTGTTTTCGAATA 57.202 36.364 18.38 0.00 34.70 1.75
252 253 3.684103 TTTCTGCACGTGTTTTCGAAT 57.316 38.095 18.38 0.00 34.70 3.34
253 254 3.473093 TTTTCTGCACGTGTTTTCGAA 57.527 38.095 18.38 9.72 34.70 3.71
254 255 3.473093 TTTTTCTGCACGTGTTTTCGA 57.527 38.095 18.38 4.01 34.70 3.71
303 304 0.944386 AGTCATTTGCCACGTGTCAC 59.056 50.000 15.65 4.11 0.00 3.67
304 305 0.943673 CAGTCATTTGCCACGTGTCA 59.056 50.000 15.65 4.57 0.00 3.58
305 306 1.225855 TCAGTCATTTGCCACGTGTC 58.774 50.000 15.65 0.98 0.00 3.67
306 307 1.896220 ATCAGTCATTTGCCACGTGT 58.104 45.000 15.65 0.00 0.00 4.49
307 308 2.223112 GCTATCAGTCATTTGCCACGTG 60.223 50.000 9.08 9.08 0.00 4.49
308 309 2.009774 GCTATCAGTCATTTGCCACGT 58.990 47.619 0.00 0.00 0.00 4.49
309 310 1.004610 CGCTATCAGTCATTTGCCACG 60.005 52.381 0.00 0.00 0.00 4.94
310 311 2.279741 TCGCTATCAGTCATTTGCCAC 58.720 47.619 0.00 0.00 0.00 5.01
311 312 2.093500 ACTCGCTATCAGTCATTTGCCA 60.093 45.455 0.00 0.00 0.00 4.92
312 313 2.541762 GACTCGCTATCAGTCATTTGCC 59.458 50.000 0.00 0.00 40.18 4.52
313 314 3.190079 TGACTCGCTATCAGTCATTTGC 58.810 45.455 0.10 0.00 44.33 3.68
318 319 4.082245 TGTCATTTGACTCGCTATCAGTCA 60.082 41.667 11.67 0.10 46.89 3.41
319 320 4.266502 GTGTCATTTGACTCGCTATCAGTC 59.733 45.833 11.67 0.00 44.99 3.51
320 321 4.081972 AGTGTCATTTGACTCGCTATCAGT 60.082 41.667 11.67 0.00 44.99 3.41
321 322 4.267214 CAGTGTCATTTGACTCGCTATCAG 59.733 45.833 11.67 0.00 44.99 2.90
322 323 4.082245 TCAGTGTCATTTGACTCGCTATCA 60.082 41.667 11.67 0.00 44.99 2.15
323 324 4.266502 GTCAGTGTCATTTGACTCGCTATC 59.733 45.833 11.67 2.27 44.99 2.08
324 325 4.177026 GTCAGTGTCATTTGACTCGCTAT 58.823 43.478 11.67 0.00 44.99 2.97
325 326 3.575630 GTCAGTGTCATTTGACTCGCTA 58.424 45.455 11.67 0.00 44.99 4.26
326 327 2.408050 GTCAGTGTCATTTGACTCGCT 58.592 47.619 11.67 5.11 44.99 4.93
327 328 1.461127 GGTCAGTGTCATTTGACTCGC 59.539 52.381 11.67 3.14 44.99 5.03
328 329 2.754472 TGGTCAGTGTCATTTGACTCG 58.246 47.619 11.67 5.59 44.99 4.18
329 330 4.614535 GCAATGGTCAGTGTCATTTGACTC 60.615 45.833 11.67 8.23 44.99 3.36
330 331 3.254166 GCAATGGTCAGTGTCATTTGACT 59.746 43.478 11.67 0.67 44.99 3.41
331 332 3.568538 GCAATGGTCAGTGTCATTTGAC 58.431 45.455 3.72 3.72 44.97 3.18
332 333 2.226200 CGCAATGGTCAGTGTCATTTGA 59.774 45.455 10.28 0.00 31.95 2.69
333 334 2.226200 TCGCAATGGTCAGTGTCATTTG 59.774 45.455 10.28 5.04 31.95 2.32
334 335 2.485426 CTCGCAATGGTCAGTGTCATTT 59.515 45.455 10.28 0.00 31.95 2.32
335 336 2.079158 CTCGCAATGGTCAGTGTCATT 58.921 47.619 8.08 8.08 34.31 2.57
336 337 1.676916 CCTCGCAATGGTCAGTGTCAT 60.677 52.381 0.48 0.00 0.00 3.06
337 338 0.320683 CCTCGCAATGGTCAGTGTCA 60.321 55.000 0.48 0.00 0.00 3.58
338 339 1.639298 GCCTCGCAATGGTCAGTGTC 61.639 60.000 0.48 0.00 0.00 3.67
339 340 1.672356 GCCTCGCAATGGTCAGTGT 60.672 57.895 0.48 0.00 0.00 3.55
340 341 1.364626 GAGCCTCGCAATGGTCAGTG 61.365 60.000 0.00 0.00 0.00 3.66
341 342 1.078848 GAGCCTCGCAATGGTCAGT 60.079 57.895 0.00 0.00 0.00 3.41
342 343 0.809241 GAGAGCCTCGCAATGGTCAG 60.809 60.000 0.00 0.00 0.00 3.51
343 344 1.219124 GAGAGCCTCGCAATGGTCA 59.781 57.895 0.00 0.00 0.00 4.02
344 345 1.880340 CGAGAGCCTCGCAATGGTC 60.880 63.158 10.89 0.00 46.75 4.02
345 346 2.185350 CGAGAGCCTCGCAATGGT 59.815 61.111 10.89 0.00 46.75 3.55
353 354 1.876263 GCGCTTCTTCGAGAGCCTC 60.876 63.158 0.00 0.00 36.60 4.70
354 355 2.183046 GCGCTTCTTCGAGAGCCT 59.817 61.111 0.00 0.00 36.60 4.58
355 356 1.876263 GAGCGCTTCTTCGAGAGCC 60.876 63.158 13.26 0.00 42.51 4.70
356 357 2.220887 CGAGCGCTTCTTCGAGAGC 61.221 63.158 13.26 7.27 41.95 4.09
357 358 0.455295 AACGAGCGCTTCTTCGAGAG 60.455 55.000 21.54 4.04 0.00 3.20
358 359 0.800631 TAACGAGCGCTTCTTCGAGA 59.199 50.000 21.54 7.38 0.00 4.04
359 360 1.317904 GTTAACGAGCGCTTCTTCGAG 59.682 52.381 21.54 6.25 0.00 4.04
360 361 1.068748 AGTTAACGAGCGCTTCTTCGA 60.069 47.619 21.54 0.00 0.00 3.71
361 362 1.337821 AGTTAACGAGCGCTTCTTCG 58.662 50.000 13.26 13.91 0.00 3.79
362 363 3.301116 CACTAGTTAACGAGCGCTTCTTC 59.699 47.826 13.26 0.00 0.00 2.87
363 364 3.243336 CACTAGTTAACGAGCGCTTCTT 58.757 45.455 13.26 8.66 0.00 2.52
364 365 2.415625 CCACTAGTTAACGAGCGCTTCT 60.416 50.000 13.26 1.05 0.00 2.85
365 366 1.918609 CCACTAGTTAACGAGCGCTTC 59.081 52.381 13.26 3.81 0.00 3.86
366 367 1.992170 CCACTAGTTAACGAGCGCTT 58.008 50.000 13.26 0.00 0.00 4.68
367 368 0.458025 GCCACTAGTTAACGAGCGCT 60.458 55.000 11.27 11.27 0.00 5.92
368 369 0.458025 AGCCACTAGTTAACGAGCGC 60.458 55.000 14.82 15.49 0.00 5.92
369 370 1.269166 CAGCCACTAGTTAACGAGCG 58.731 55.000 14.82 6.24 0.00 5.03
370 371 1.000145 GCAGCCACTAGTTAACGAGC 59.000 55.000 14.82 7.73 0.00 5.03
371 372 2.531206 GAGCAGCCACTAGTTAACGAG 58.469 52.381 13.50 13.50 0.00 4.18
372 373 1.203994 GGAGCAGCCACTAGTTAACGA 59.796 52.381 0.00 0.00 36.34 3.85
373 374 1.067142 TGGAGCAGCCACTAGTTAACG 60.067 52.381 0.00 0.00 43.33 3.18
374 375 2.762535 TGGAGCAGCCACTAGTTAAC 57.237 50.000 0.00 0.00 43.33 2.01
384 385 0.615827 AATCCCCTTTTGGAGCAGCC 60.616 55.000 0.00 0.00 44.07 4.85
385 386 0.533951 CAATCCCCTTTTGGAGCAGC 59.466 55.000 0.00 0.00 44.07 5.25
386 387 1.188863 CCAATCCCCTTTTGGAGCAG 58.811 55.000 0.00 0.00 45.35 4.24
387 388 0.252193 CCCAATCCCCTTTTGGAGCA 60.252 55.000 4.06 0.00 45.35 4.26
388 389 0.977627 CCCCAATCCCCTTTTGGAGC 60.978 60.000 4.06 0.00 45.35 4.70
389 390 0.325577 CCCCCAATCCCCTTTTGGAG 60.326 60.000 4.06 0.00 45.35 3.86
390 391 1.787112 CCCCCAATCCCCTTTTGGA 59.213 57.895 4.06 0.00 45.35 3.53
391 392 1.995066 GCCCCCAATCCCCTTTTGG 60.995 63.158 0.00 0.00 42.73 3.28
392 393 0.839853 TTGCCCCCAATCCCCTTTTG 60.840 55.000 0.00 0.00 0.00 2.44
393 394 0.840288 GTTGCCCCCAATCCCCTTTT 60.840 55.000 0.00 0.00 32.75 2.27
394 395 1.229496 GTTGCCCCCAATCCCCTTT 60.229 57.895 0.00 0.00 32.75 3.11
395 396 2.042279 TTGTTGCCCCCAATCCCCTT 62.042 55.000 0.00 0.00 32.75 3.95
396 397 2.042279 TTTGTTGCCCCCAATCCCCT 62.042 55.000 0.00 0.00 32.75 4.79
397 398 0.913934 ATTTGTTGCCCCCAATCCCC 60.914 55.000 0.00 0.00 32.75 4.81
398 399 0.991146 AATTTGTTGCCCCCAATCCC 59.009 50.000 0.00 0.00 32.75 3.85
399 400 2.224744 ACAAATTTGTTGCCCCCAATCC 60.225 45.455 18.13 0.00 38.47 3.01
400 401 3.138884 ACAAATTTGTTGCCCCCAATC 57.861 42.857 18.13 0.00 38.47 2.67
411 412 0.031449 CGGCCCGTGAACAAATTTGT 59.969 50.000 18.13 18.13 44.72 2.83
412 413 0.312416 TCGGCCCGTGAACAAATTTG 59.688 50.000 16.67 16.67 0.00 2.32
413 414 0.596082 CTCGGCCCGTGAACAAATTT 59.404 50.000 1.63 0.00 0.00 1.82
414 415 1.862602 GCTCGGCCCGTGAACAAATT 61.863 55.000 9.78 0.00 0.00 1.82
415 416 2.332654 GCTCGGCCCGTGAACAAAT 61.333 57.895 9.78 0.00 0.00 2.32
416 417 2.975799 GCTCGGCCCGTGAACAAA 60.976 61.111 9.78 0.00 0.00 2.83
447 448 0.610232 AAACTGAGATGGGCAGTGGC 60.610 55.000 8.47 8.47 45.27 5.01
448 449 1.815003 GAAAACTGAGATGGGCAGTGG 59.185 52.381 0.00 0.00 45.27 4.00
449 450 1.466167 CGAAAACTGAGATGGGCAGTG 59.534 52.381 0.00 0.00 45.27 3.66
451 452 1.734465 GACGAAAACTGAGATGGGCAG 59.266 52.381 0.00 0.00 39.26 4.85
452 453 1.808411 GACGAAAACTGAGATGGGCA 58.192 50.000 0.00 0.00 0.00 5.36
453 454 0.721718 CGACGAAAACTGAGATGGGC 59.278 55.000 0.00 0.00 0.00 5.36
454 455 1.726791 CACGACGAAAACTGAGATGGG 59.273 52.381 0.00 0.00 0.00 4.00
455 456 2.408704 GTCACGACGAAAACTGAGATGG 59.591 50.000 0.00 0.00 0.00 3.51
456 457 3.309388 AGTCACGACGAAAACTGAGATG 58.691 45.455 0.00 0.00 36.20 2.90
457 458 3.644884 AGTCACGACGAAAACTGAGAT 57.355 42.857 0.00 0.00 36.20 2.75
458 459 3.113322 CAAGTCACGACGAAAACTGAGA 58.887 45.455 0.00 0.00 36.20 3.27
459 460 3.113322 TCAAGTCACGACGAAAACTGAG 58.887 45.455 0.00 0.00 36.20 3.35
460 461 3.113322 CTCAAGTCACGACGAAAACTGA 58.887 45.455 0.00 0.00 36.20 3.41
461 462 2.347661 GCTCAAGTCACGACGAAAACTG 60.348 50.000 0.00 0.00 36.20 3.16
462 463 1.859080 GCTCAAGTCACGACGAAAACT 59.141 47.619 0.00 0.00 36.20 2.66
463 464 1.395573 CGCTCAAGTCACGACGAAAAC 60.396 52.381 0.00 0.00 36.20 2.43
464 465 0.850217 CGCTCAAGTCACGACGAAAA 59.150 50.000 0.00 0.00 36.20 2.29
465 466 0.937699 CCGCTCAAGTCACGACGAAA 60.938 55.000 0.00 0.00 36.20 3.46
466 467 1.371267 CCGCTCAAGTCACGACGAA 60.371 57.895 0.00 0.00 36.20 3.85
467 468 1.229975 TACCGCTCAAGTCACGACGA 61.230 55.000 0.00 0.00 36.20 4.20
468 469 0.386352 TTACCGCTCAAGTCACGACG 60.386 55.000 0.00 0.00 36.20 5.12
469 470 1.058404 GTTACCGCTCAAGTCACGAC 58.942 55.000 0.00 0.00 0.00 4.34
470 471 0.669619 TGTTACCGCTCAAGTCACGA 59.330 50.000 0.00 0.00 0.00 4.35
471 472 1.060713 CTGTTACCGCTCAAGTCACG 58.939 55.000 0.00 0.00 0.00 4.35
472 473 0.790814 GCTGTTACCGCTCAAGTCAC 59.209 55.000 0.00 0.00 0.00 3.67
473 474 0.666274 CGCTGTTACCGCTCAAGTCA 60.666 55.000 0.00 0.00 0.00 3.41
474 475 2.070861 CGCTGTTACCGCTCAAGTC 58.929 57.895 0.00 0.00 0.00 3.01
475 476 4.261888 CGCTGTTACCGCTCAAGT 57.738 55.556 0.00 0.00 0.00 3.16
483 484 2.166584 AAAACTCGCGCGCTGTTACC 62.167 55.000 30.04 3.91 0.00 2.85
484 485 0.435769 TAAAACTCGCGCGCTGTTAC 59.564 50.000 30.04 4.60 0.00 2.50
485 486 1.136557 GTTAAAACTCGCGCGCTGTTA 60.137 47.619 30.04 20.39 0.00 2.41
486 487 0.383860 GTTAAAACTCGCGCGCTGTT 60.384 50.000 30.48 27.75 0.00 3.16
487 488 1.203313 GTTAAAACTCGCGCGCTGT 59.797 52.632 30.48 23.76 0.00 4.40
488 489 0.516524 GAGTTAAAACTCGCGCGCTG 60.517 55.000 30.48 23.06 45.11 5.18
489 490 1.779683 GAGTTAAAACTCGCGCGCT 59.220 52.632 30.48 14.01 45.11 5.92
490 491 4.321030 GAGTTAAAACTCGCGCGC 57.679 55.556 27.95 23.91 45.11 6.86
499 500 9.581099 CCTTTAGAGCAAAACAAAGAGTTAAAA 57.419 29.630 0.00 0.00 40.26 1.52
500 501 8.962679 TCCTTTAGAGCAAAACAAAGAGTTAAA 58.037 29.630 0.00 0.00 40.26 1.52
501 502 8.514330 TCCTTTAGAGCAAAACAAAGAGTTAA 57.486 30.769 0.00 0.00 40.26 2.01
502 503 8.514330 TTCCTTTAGAGCAAAACAAAGAGTTA 57.486 30.769 0.00 0.00 40.26 2.24
503 504 7.404671 TTCCTTTAGAGCAAAACAAAGAGTT 57.595 32.000 0.00 0.00 43.89 3.01
504 505 7.404671 TTTCCTTTAGAGCAAAACAAAGAGT 57.595 32.000 0.00 0.00 31.11 3.24
505 506 7.044052 CGTTTTCCTTTAGAGCAAAACAAAGAG 60.044 37.037 11.78 0.00 38.22 2.85
506 507 6.750039 CGTTTTCCTTTAGAGCAAAACAAAGA 59.250 34.615 11.78 0.00 38.22 2.52
507 508 6.750039 TCGTTTTCCTTTAGAGCAAAACAAAG 59.250 34.615 11.78 0.00 38.22 2.77
508 509 6.622549 TCGTTTTCCTTTAGAGCAAAACAAA 58.377 32.000 11.78 0.00 38.22 2.83
509 510 6.197364 TCGTTTTCCTTTAGAGCAAAACAA 57.803 33.333 11.78 0.00 38.22 2.83
510 511 5.816919 CTCGTTTTCCTTTAGAGCAAAACA 58.183 37.500 11.78 0.99 38.22 2.83
517 518 7.385478 AGAGTTAAAGCTCGTTTTCCTTTAGAG 59.615 37.037 0.00 0.00 40.26 2.43
518 519 7.215085 AGAGTTAAAGCTCGTTTTCCTTTAGA 58.785 34.615 0.00 0.00 40.26 2.10
519 520 7.422878 AGAGTTAAAGCTCGTTTTCCTTTAG 57.577 36.000 0.00 0.00 40.26 1.85
520 521 7.281549 ACAAGAGTTAAAGCTCGTTTTCCTTTA 59.718 33.333 0.00 0.00 40.26 1.85
521 522 6.095021 ACAAGAGTTAAAGCTCGTTTTCCTTT 59.905 34.615 0.00 0.00 40.26 3.11
522 523 5.589050 ACAAGAGTTAAAGCTCGTTTTCCTT 59.411 36.000 0.00 0.00 40.26 3.36
523 524 5.007724 CACAAGAGTTAAAGCTCGTTTTCCT 59.992 40.000 0.00 0.00 40.26 3.36
524 525 5.205565 CACAAGAGTTAAAGCTCGTTTTCC 58.794 41.667 0.00 0.00 40.26 3.13
525 526 5.205565 CCACAAGAGTTAAAGCTCGTTTTC 58.794 41.667 0.00 0.00 40.26 2.29
526 527 4.638865 ACCACAAGAGTTAAAGCTCGTTTT 59.361 37.500 0.00 0.00 40.26 2.43
549 550 5.586243 CGGCAAGTTGGTAGTAGTAGTACTA 59.414 44.000 12.58 12.58 40.23 1.82
550 551 4.397417 CGGCAAGTTGGTAGTAGTAGTACT 59.603 45.833 14.57 14.57 42.49 2.73
551 552 4.439289 CCGGCAAGTTGGTAGTAGTAGTAC 60.439 50.000 4.75 6.61 0.00 2.73
552 553 3.696051 CCGGCAAGTTGGTAGTAGTAGTA 59.304 47.826 4.75 0.00 0.00 1.82
553 554 2.494870 CCGGCAAGTTGGTAGTAGTAGT 59.505 50.000 4.75 0.00 0.00 2.73
554 555 2.756760 TCCGGCAAGTTGGTAGTAGTAG 59.243 50.000 4.75 0.00 0.00 2.57
555 556 2.806434 TCCGGCAAGTTGGTAGTAGTA 58.194 47.619 4.75 0.00 0.00 1.82
556 557 1.636148 TCCGGCAAGTTGGTAGTAGT 58.364 50.000 4.75 0.00 0.00 2.73
557 558 2.618053 CTTCCGGCAAGTTGGTAGTAG 58.382 52.381 4.75 0.00 0.00 2.57
558 559 1.276989 CCTTCCGGCAAGTTGGTAGTA 59.723 52.381 4.75 0.00 0.00 1.82
559 560 0.036306 CCTTCCGGCAAGTTGGTAGT 59.964 55.000 4.75 0.00 0.00 2.73
560 561 0.323629 TCCTTCCGGCAAGTTGGTAG 59.676 55.000 4.75 0.00 0.00 3.18
561 562 0.766131 TTCCTTCCGGCAAGTTGGTA 59.234 50.000 4.75 0.00 0.00 3.25
562 563 0.106419 TTTCCTTCCGGCAAGTTGGT 60.106 50.000 4.75 0.00 0.00 3.67
563 564 0.598065 CTTTCCTTCCGGCAAGTTGG 59.402 55.000 4.75 0.00 30.10 3.77
564 565 0.039165 GCTTTCCTTCCGGCAAGTTG 60.039 55.000 0.00 0.00 36.14 3.16
570 571 1.077429 ATCCAGCTTTCCTTCCGGC 60.077 57.895 0.00 0.00 0.00 6.13
572 573 1.208052 TCAGATCCAGCTTTCCTTCCG 59.792 52.381 0.00 0.00 0.00 4.30
601 602 1.222936 CCCCTGTGATGTGAGGCTC 59.777 63.158 7.79 7.79 0.00 4.70
783 1638 2.647158 GGAAGCGAGGGGAAGACGT 61.647 63.158 0.00 0.00 0.00 4.34
859 1714 3.056891 AGAAAAGGAGAAGCGAGAGTGAG 60.057 47.826 0.00 0.00 0.00 3.51
893 1748 1.697284 GAATCAAGGGATGGGGCTTC 58.303 55.000 0.00 0.00 32.92 3.86
913 1768 0.681733 AGGATCCCGAACGATGGATG 59.318 55.000 8.55 0.00 41.44 3.51
934 1789 2.709629 CTAGAAGCGCGCGAGAGGAG 62.710 65.000 37.18 19.88 0.00 3.69
935 1790 2.822701 TAGAAGCGCGCGAGAGGA 60.823 61.111 37.18 12.44 0.00 3.71
936 1791 2.352915 CTAGAAGCGCGCGAGAGG 60.353 66.667 37.18 13.59 0.00 3.69
958 1813 0.899019 AGAAGAAGCTTCGAGGGACC 59.101 55.000 20.43 6.28 0.00 4.46
1071 1929 2.284847 TACGGGAACAGGGACCCC 60.285 66.667 7.00 1.17 42.86 4.95
1077 1935 2.666812 GGTGGGTACGGGAACAGG 59.333 66.667 0.00 0.00 0.00 4.00
1423 2281 0.250901 TTTGGAGAAGCAGAGTGGGC 60.251 55.000 0.00 0.00 0.00 5.36
1427 2285 5.649831 GGTATGAAATTTGGAGAAGCAGAGT 59.350 40.000 0.00 0.00 0.00 3.24
1428 2286 5.649395 TGGTATGAAATTTGGAGAAGCAGAG 59.351 40.000 0.00 0.00 0.00 3.35
1430 2288 5.393461 GGTGGTATGAAATTTGGAGAAGCAG 60.393 44.000 0.00 0.00 0.00 4.24
1431 2289 4.462483 GGTGGTATGAAATTTGGAGAAGCA 59.538 41.667 0.00 0.00 0.00 3.91
1432 2290 4.462483 TGGTGGTATGAAATTTGGAGAAGC 59.538 41.667 0.00 0.00 0.00 3.86
1434 2292 5.105392 GCATGGTGGTATGAAATTTGGAGAA 60.105 40.000 0.00 0.00 0.00 2.87
1435 2293 4.402155 GCATGGTGGTATGAAATTTGGAGA 59.598 41.667 0.00 0.00 0.00 3.71
1436 2294 4.160065 TGCATGGTGGTATGAAATTTGGAG 59.840 41.667 0.00 0.00 0.00 3.86
1437 2295 4.081752 GTGCATGGTGGTATGAAATTTGGA 60.082 41.667 0.00 0.00 0.00 3.53
1439 2297 4.081531 AGGTGCATGGTGGTATGAAATTTG 60.082 41.667 0.00 0.00 0.00 2.32
1440 2298 4.095946 AGGTGCATGGTGGTATGAAATTT 58.904 39.130 0.00 0.00 0.00 1.82
1441 2299 3.701040 GAGGTGCATGGTGGTATGAAATT 59.299 43.478 0.00 0.00 0.00 1.82
1442 2300 3.053395 AGAGGTGCATGGTGGTATGAAAT 60.053 43.478 0.00 0.00 0.00 2.17
1444 2302 1.915489 AGAGGTGCATGGTGGTATGAA 59.085 47.619 0.00 0.00 0.00 2.57
1445 2303 1.210234 CAGAGGTGCATGGTGGTATGA 59.790 52.381 0.00 0.00 0.00 2.15
1446 2304 1.671979 CAGAGGTGCATGGTGGTATG 58.328 55.000 0.00 0.00 0.00 2.39
1479 2357 7.958567 TCCGAATCACAAAATTAATAACGTGTC 59.041 33.333 0.00 3.11 0.00 3.67
1496 2374 3.547613 GCATCTGCTCATTTCCGAATCAC 60.548 47.826 0.00 0.00 38.21 3.06
1502 2380 0.811219 TCCGCATCTGCTCATTTCCG 60.811 55.000 0.09 0.00 39.32 4.30
1505 2383 1.315690 CCATCCGCATCTGCTCATTT 58.684 50.000 0.09 0.00 39.32 2.32
1591 2472 0.459489 TTCATTAATTGCTGGCGGGC 59.541 50.000 0.00 0.00 0.00 6.13
1644 2534 2.470286 CTTCGTTTCGTCAGCGGC 59.530 61.111 0.00 0.00 38.89 6.53
1772 2662 2.930826 TCACCTTGGACTTTGAGGAC 57.069 50.000 0.00 0.00 34.61 3.85
1811 2701 1.203523 GCTAGGAGTAGATGATGGGCG 59.796 57.143 0.00 0.00 0.00 6.13
1857 2747 5.826737 ACAAAAATGGAGCTGGAGATAGATG 59.173 40.000 0.00 0.00 0.00 2.90
1865 2755 1.631405 CCCACAAAAATGGAGCTGGA 58.369 50.000 0.00 0.00 43.02 3.86
2004 2894 2.359230 GGCTGCGAGGTTGAAGCT 60.359 61.111 0.00 0.00 35.93 3.74
2005 2895 3.793144 CGGCTGCGAGGTTGAAGC 61.793 66.667 0.00 0.00 34.86 3.86
2006 2896 3.793144 GCGGCTGCGAGGTTGAAG 61.793 66.667 0.00 0.00 0.00 3.02
2047 2937 5.055144 AGTTTAGAACGGTTTCTTCTGACC 58.945 41.667 0.00 0.00 39.17 4.02
2050 2945 4.980434 TCGAGTTTAGAACGGTTTCTTCTG 59.020 41.667 0.00 0.00 39.17 3.02
2055 2950 4.687483 TGGATTCGAGTTTAGAACGGTTTC 59.313 41.667 0.00 0.00 36.23 2.78
2060 2955 3.616821 TGCATGGATTCGAGTTTAGAACG 59.383 43.478 0.00 0.00 36.23 3.95
2088 2983 0.674581 CGCTGATGCACCTGGAGAAA 60.675 55.000 0.00 0.00 39.64 2.52
2093 2988 4.790962 AGCCGCTGATGCACCTGG 62.791 66.667 0.00 0.00 39.64 4.45
2105 3000 1.167155 TCGTCTCCTCTATCAGCCGC 61.167 60.000 0.00 0.00 0.00 6.53
2215 3110 2.485122 CGCCCATTTCCGTTCTGC 59.515 61.111 0.00 0.00 0.00 4.26
2329 3234 7.780271 GGACAAAAGGGAGGTTCAATCTTATAT 59.220 37.037 0.00 0.00 0.00 0.86
2330 3235 7.116736 GGACAAAAGGGAGGTTCAATCTTATA 58.883 38.462 0.00 0.00 0.00 0.98
2331 3236 5.952347 GGACAAAAGGGAGGTTCAATCTTAT 59.048 40.000 0.00 0.00 0.00 1.73
2335 3240 2.826128 GGGACAAAAGGGAGGTTCAATC 59.174 50.000 0.00 0.00 0.00 2.67
2398 3303 3.063588 CGACGCTGATCAGTCACTAGTTA 59.936 47.826 23.38 0.00 37.23 2.24
2399 3304 2.159503 CGACGCTGATCAGTCACTAGTT 60.160 50.000 23.38 0.09 37.23 2.24
2400 3305 1.398739 CGACGCTGATCAGTCACTAGT 59.601 52.381 23.38 13.46 37.23 2.57
2420 3325 4.556898 GCTCTGCAAACCATCATCATCATC 60.557 45.833 0.00 0.00 0.00 2.92
2430 3335 1.304713 CCCCAGCTCTGCAAACCAT 60.305 57.895 0.00 0.00 0.00 3.55
2865 3772 6.039382 AGTGAAATAATTAGTTCGGCCATTCC 59.961 38.462 17.95 2.39 33.37 3.01
2866 3773 6.912591 CAGTGAAATAATTAGTTCGGCCATTC 59.087 38.462 17.95 5.50 33.37 2.67
2869 3776 4.095782 GCAGTGAAATAATTAGTTCGGCCA 59.904 41.667 17.95 1.75 33.37 5.36
2875 3783 7.900782 ACACGTAGCAGTGAAATAATTAGTT 57.099 32.000 12.78 0.00 44.43 2.24
2919 3828 0.106318 GGATGAGCAAGCAGGGGATT 60.106 55.000 0.00 0.00 0.00 3.01
2920 3829 1.535685 GGATGAGCAAGCAGGGGAT 59.464 57.895 0.00 0.00 0.00 3.85
2921 3830 3.001514 GGATGAGCAAGCAGGGGA 58.998 61.111 0.00 0.00 0.00 4.81
2924 3833 0.674581 TGTTCGGATGAGCAAGCAGG 60.675 55.000 0.00 0.00 31.89 4.85
2925 3834 1.159285 TTGTTCGGATGAGCAAGCAG 58.841 50.000 0.00 0.00 39.94 4.24
2926 3835 1.536766 CTTTGTTCGGATGAGCAAGCA 59.463 47.619 0.00 0.00 44.55 3.91
2927 3836 1.730446 GCTTTGTTCGGATGAGCAAGC 60.730 52.381 0.00 0.00 44.55 4.01
2928 3837 1.135575 GGCTTTGTTCGGATGAGCAAG 60.136 52.381 0.00 0.00 44.55 4.01
2929 3838 0.881118 GGCTTTGTTCGGATGAGCAA 59.119 50.000 0.00 0.00 42.60 3.91
3038 3953 5.796502 ATACATCCCCAGAAAAAGAAGGA 57.203 39.130 0.00 0.00 0.00 3.36
3049 3964 2.885616 AGGTACGGTATACATCCCCAG 58.114 52.381 5.01 0.00 0.00 4.45
3133 4048 9.766277 GTTGCTATTTACTCAGATTTCTCTTTG 57.234 33.333 0.00 0.00 0.00 2.77
3143 4058 6.293955 GGCTTTGTTGTTGCTATTTACTCAGA 60.294 38.462 0.00 0.00 0.00 3.27
3205 4121 7.377928 GCCTCATCGATTGATTAATTGAAACAG 59.622 37.037 4.38 1.88 39.52 3.16
3220 4136 3.674138 GCAACACATTTGCCTCATCGATT 60.674 43.478 0.00 0.00 39.38 3.34
3221 4137 2.159338 GCAACACATTTGCCTCATCGAT 60.159 45.455 0.00 0.00 39.38 3.59
3222 4138 1.199789 GCAACACATTTGCCTCATCGA 59.800 47.619 0.00 0.00 39.38 3.59
3223 4139 1.621107 GCAACACATTTGCCTCATCG 58.379 50.000 0.00 0.00 39.38 3.84
3230 4146 0.031994 AACGGAGGCAACACATTTGC 59.968 50.000 0.17 0.17 44.22 3.68
3231 4147 2.223688 TGAAACGGAGGCAACACATTTG 60.224 45.455 0.00 0.00 41.41 2.32
3232 4148 2.028130 TGAAACGGAGGCAACACATTT 58.972 42.857 0.00 0.00 41.41 2.32
3233 4149 1.686355 TGAAACGGAGGCAACACATT 58.314 45.000 0.00 0.00 41.41 2.71
3238 4154 3.159353 AGTTTTTGAAACGGAGGCAAC 57.841 42.857 0.00 0.00 0.00 4.17
3281 4197 5.745294 GCTTACGAATAACATGACCTCGTAA 59.255 40.000 22.55 22.55 46.75 3.18
3285 4201 5.109903 ACAGCTTACGAATAACATGACCTC 58.890 41.667 0.00 0.00 0.00 3.85
3288 4204 8.126871 TCAATACAGCTTACGAATAACATGAC 57.873 34.615 0.00 0.00 0.00 3.06
3318 4268 6.018180 ACGGCCAGAAAGATCGAATTTATTAC 60.018 38.462 2.24 0.00 0.00 1.89
3319 4269 6.053005 ACGGCCAGAAAGATCGAATTTATTA 58.947 36.000 2.24 0.00 0.00 0.98
3332 4282 1.533625 TGAATCCAACGGCCAGAAAG 58.466 50.000 2.24 0.00 0.00 2.62
3407 4357 1.202818 AGCAAGAGGAAAAAGACGGCT 60.203 47.619 0.00 0.00 0.00 5.52
3485 4437 2.394563 GCGAGGCAGTGAGAAAGGC 61.395 63.158 0.00 0.00 0.00 4.35
3505 4457 1.228063 GATGTGGCGGCATGAGGAT 60.228 57.895 17.19 2.42 0.00 3.24
3551 4517 0.829990 GGAAGGCTGGAGAGAAGAGG 59.170 60.000 0.00 0.00 0.00 3.69
3556 4522 1.613630 GGGTGGAAGGCTGGAGAGA 60.614 63.158 0.00 0.00 0.00 3.10
3557 4523 1.614824 AGGGTGGAAGGCTGGAGAG 60.615 63.158 0.00 0.00 0.00 3.20
3588 4556 0.622665 AGGGAGTGGGAAGCTGATTG 59.377 55.000 0.00 0.00 0.00 2.67
3591 4559 0.693049 GAAAGGGAGTGGGAAGCTGA 59.307 55.000 0.00 0.00 0.00 4.26
3658 4626 1.927174 CGTGCAACTCCGATTAAGAGG 59.073 52.381 0.00 0.00 35.58 3.69
3664 4632 2.048597 TCGCGTGCAACTCCGATT 60.049 55.556 5.77 0.00 34.26 3.34
3694 4662 1.016130 CGCCTGAATTCACAGCTCGT 61.016 55.000 18.71 0.00 36.67 4.18
3702 4670 5.064707 GCTATTTGTAAGTCGCCTGAATTCA 59.935 40.000 8.12 8.12 33.81 2.57
3713 4681 4.316375 TCGCGTTTGCTATTTGTAAGTC 57.684 40.909 5.77 0.00 39.65 3.01
3742 4710 7.886629 ATCTTGGATGCACTACACATAAATT 57.113 32.000 0.00 0.00 0.00 1.82
3745 4713 5.822519 GGAATCTTGGATGCACTACACATAA 59.177 40.000 0.00 0.00 0.00 1.90
3784 4756 1.375908 GCATGCAGTTCACTCGGGA 60.376 57.895 14.21 0.00 0.00 5.14
3789 4761 1.066645 TCGATCTGCATGCAGTTCACT 60.067 47.619 38.49 24.72 43.96 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.