Multiple sequence alignment - TraesCS5A01G189400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G189400 chr5A 100.000 4278 0 0 1 4278 392001588 391997311 0.000000e+00 7901.0
1 TraesCS5A01G189400 chr5A 78.798 599 97 22 1972 2565 391989633 391989060 4.040000e-100 375.0
2 TraesCS5A01G189400 chr5A 87.296 307 32 7 1027 1331 392038000 392037699 1.140000e-90 344.0
3 TraesCS5A01G189400 chr5A 94.419 215 11 1 355 568 448842453 448842239 3.190000e-86 329.0
4 TraesCS5A01G189400 chr5A 85.921 277 31 5 1043 1317 391990142 391989872 5.410000e-74 289.0
5 TraesCS5A01G189400 chr5A 82.235 349 47 12 2814 3150 391988838 391988493 1.950000e-73 287.0
6 TraesCS5A01G189400 chr5D 96.409 1476 47 2 1922 3391 305715893 305717368 0.000000e+00 2427.0
7 TraesCS5A01G189400 chr5D 91.102 1180 54 16 732 1881 305714738 305715896 0.000000e+00 1550.0
8 TraesCS5A01G189400 chr5D 80.697 746 123 18 1972 2714 305763609 305764336 1.040000e-155 560.0
9 TraesCS5A01G189400 chr5D 96.667 300 10 0 12 311 305714304 305714603 2.300000e-137 499.0
10 TraesCS5A01G189400 chr5D 88.449 303 29 6 1030 1331 305709761 305710058 1.130000e-95 361.0
11 TraesCS5A01G189400 chr5D 88.571 280 28 4 1040 1317 305763098 305763375 1.910000e-88 337.0
12 TraesCS5A01G189400 chr5D 81.948 349 48 13 2814 3150 305764433 305764778 9.060000e-72 281.0
13 TraesCS5A01G189400 chr5B 96.276 1477 48 4 1922 3394 350396029 350397502 0.000000e+00 2416.0
14 TraesCS5A01G189400 chr5B 93.730 925 38 7 604 1525 350391870 350392777 0.000000e+00 1369.0
15 TraesCS5A01G189400 chr5B 80.027 746 128 18 1972 2714 350485963 350486690 2.260000e-147 532.0
16 TraesCS5A01G189400 chr5B 87.838 370 25 8 1517 1881 350395678 350396032 2.380000e-112 416.0
17 TraesCS5A01G189400 chr5B 93.502 277 18 0 43 319 350391584 350391860 3.080000e-111 412.0
18 TraesCS5A01G189400 chr5B 88.119 303 30 6 1030 1331 350368217 350368514 5.260000e-94 355.0
19 TraesCS5A01G189400 chr5B 88.214 280 29 4 1040 1317 350485441 350485718 8.870000e-87 331.0
20 TraesCS5A01G189400 chr5B 82.235 349 47 12 2814 3150 350486790 350487135 1.950000e-73 287.0
21 TraesCS5A01G189400 chr7B 79.058 764 115 23 3519 4278 91247406 91246684 2.310000e-132 483.0
22 TraesCS5A01G189400 chr7B 78.954 765 115 26 3518 4278 254705997 254706719 2.990000e-131 479.0
23 TraesCS5A01G189400 chr7B 85.333 75 5 5 3935 4006 276739252 276739181 5.930000e-09 73.1
24 TraesCS5A01G189400 chr3B 83.915 516 68 11 3768 4278 172322204 172322709 2.990000e-131 479.0
25 TraesCS5A01G189400 chr3B 78.927 764 116 19 3519 4278 24913940 24913218 1.080000e-130 477.0
26 TraesCS5A01G189400 chr3B 78.927 764 115 24 3519 4278 525230135 525229414 1.080000e-130 477.0
27 TraesCS5A01G189400 chr3B 78.010 764 112 21 3519 4278 291299852 291299141 3.060000e-116 429.0
28 TraesCS5A01G189400 chr4A 78.665 764 118 23 3519 4278 735783946 735783224 2.330000e-127 466.0
29 TraesCS5A01G189400 chr4A 91.129 248 13 4 355 593 19113228 19113475 1.150000e-85 327.0
30 TraesCS5A01G189400 chr1B 78.665 764 118 23 3519 4278 636745863 636745141 2.330000e-127 466.0
31 TraesCS5A01G189400 chr1B 86.842 76 9 1 3932 4006 667885432 667885507 2.740000e-12 84.2
32 TraesCS5A01G189400 chr2B 82.422 512 77 8 3768 4275 52539653 52539151 6.570000e-118 435.0
33 TraesCS5A01G189400 chr2A 76.409 763 117 38 3519 4278 605117545 605116843 1.890000e-93 353.0
34 TraesCS5A01G189400 chr6A 92.181 243 10 4 360 593 53260516 53260274 6.850000e-88 335.0
35 TraesCS5A01G189400 chr6A 90.947 243 13 6 360 593 127610914 127610672 6.900000e-83 318.0
36 TraesCS5A01G189400 chr3A 91.870 246 11 4 357 593 621895906 621896151 6.850000e-88 335.0
37 TraesCS5A01G189400 chr3A 93.953 215 11 2 352 565 198424385 198424598 1.480000e-84 324.0
38 TraesCS5A01G189400 chr7A 94.340 212 11 1 355 565 736532141 736532352 1.480000e-84 324.0
39 TraesCS5A01G189400 chr7A 90.323 248 15 6 355 593 367140035 367140282 2.480000e-82 316.0
40 TraesCS5A01G189400 chr7A 89.286 252 22 3 357 603 470166354 470166605 1.160000e-80 311.0
41 TraesCS5A01G189400 chr1A 82.576 264 46 0 1037 1300 550109686 550109949 2.570000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G189400 chr5A 391997311 392001588 4277 True 7901.000000 7901 100.000000 1 4278 1 chr5A.!!$R1 4277
1 TraesCS5A01G189400 chr5A 391988493 391990142 1649 True 317.000000 375 82.318000 1043 3150 3 chr5A.!!$R4 2107
2 TraesCS5A01G189400 chr5D 305714304 305717368 3064 False 1492.000000 2427 94.726000 12 3391 3 chr5D.!!$F2 3379
3 TraesCS5A01G189400 chr5D 305763098 305764778 1680 False 392.666667 560 83.738667 1040 3150 3 chr5D.!!$F3 2110
4 TraesCS5A01G189400 chr5B 350391584 350397502 5918 False 1153.250000 2416 92.836500 43 3394 4 chr5B.!!$F2 3351
5 TraesCS5A01G189400 chr5B 350485441 350487135 1694 False 383.333333 532 83.492000 1040 3150 3 chr5B.!!$F3 2110
6 TraesCS5A01G189400 chr7B 91246684 91247406 722 True 483.000000 483 79.058000 3519 4278 1 chr7B.!!$R1 759
7 TraesCS5A01G189400 chr7B 254705997 254706719 722 False 479.000000 479 78.954000 3518 4278 1 chr7B.!!$F1 760
8 TraesCS5A01G189400 chr3B 172322204 172322709 505 False 479.000000 479 83.915000 3768 4278 1 chr3B.!!$F1 510
9 TraesCS5A01G189400 chr3B 24913218 24913940 722 True 477.000000 477 78.927000 3519 4278 1 chr3B.!!$R1 759
10 TraesCS5A01G189400 chr3B 525229414 525230135 721 True 477.000000 477 78.927000 3519 4278 1 chr3B.!!$R3 759
11 TraesCS5A01G189400 chr3B 291299141 291299852 711 True 429.000000 429 78.010000 3519 4278 1 chr3B.!!$R2 759
12 TraesCS5A01G189400 chr4A 735783224 735783946 722 True 466.000000 466 78.665000 3519 4278 1 chr4A.!!$R1 759
13 TraesCS5A01G189400 chr1B 636745141 636745863 722 True 466.000000 466 78.665000 3519 4278 1 chr1B.!!$R1 759
14 TraesCS5A01G189400 chr2B 52539151 52539653 502 True 435.000000 435 82.422000 3768 4275 1 chr2B.!!$R1 507
15 TraesCS5A01G189400 chr2A 605116843 605117545 702 True 353.000000 353 76.409000 3519 4278 1 chr2A.!!$R1 759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 342 0.034337 GTGGACTTCCGTGTGCCTAA 59.966 55.0 0.00 0.0 39.43 2.69 F
323 343 0.034337 TGGACTTCCGTGTGCCTAAC 59.966 55.0 0.00 0.0 39.43 2.34 F
325 345 0.034337 GACTTCCGTGTGCCTAACCA 59.966 55.0 0.00 0.0 0.00 3.67 F
326 346 0.034896 ACTTCCGTGTGCCTAACCAG 59.965 55.0 0.00 0.0 0.00 4.00 F
358 378 0.249398 GCACCAACGGAGGACTGTAT 59.751 55.0 2.13 0.0 34.90 2.29 F
1311 1351 0.319641 GCGTCTCCGAAACCTTCACT 60.320 55.0 0.00 0.0 35.63 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 4596 0.178767 AGACTGTGCTTGCTGTGTCA 59.821 50.000 11.95 0.00 0.0 3.58 R
2222 5291 0.402121 AGAAGAACCAGTTGAGGGCC 59.598 55.000 0.00 0.00 0.0 5.80 R
2417 5486 2.047443 GGACGCGAAGGAGGAGAGT 61.047 63.158 15.93 0.00 0.0 3.24 R
2720 5789 2.415512 CGAGGCTTACAAGTTTGTAGCC 59.584 50.000 23.33 23.33 46.5 3.93 R
2752 5821 7.500227 CCATCTTATATGTTGAAAAGCTCTGGA 59.500 37.037 0.00 0.00 0.0 3.86 R
3404 6520 0.034337 TCCGTTGTTTTAGGAGCGCT 59.966 50.000 11.27 11.27 0.0 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.429971 TGTGTTCAGAAGCAAATGCCAA 59.570 40.909 0.94 0.00 43.38 4.52
152 153 0.179100 TATCTTCCAGCAGCACGAGC 60.179 55.000 0.00 0.00 42.56 5.03
210 211 1.067295 AGCCCACTCTTGACCATCAA 58.933 50.000 0.00 0.00 34.79 2.57
237 238 2.582052 TCTTTTGGTCCTTGCAATCGT 58.418 42.857 0.00 0.00 0.00 3.73
301 302 1.080501 CAGAAACGCCGAGAGCAGA 60.081 57.895 0.00 0.00 44.04 4.26
322 342 0.034337 GTGGACTTCCGTGTGCCTAA 59.966 55.000 0.00 0.00 39.43 2.69
323 343 0.034337 TGGACTTCCGTGTGCCTAAC 59.966 55.000 0.00 0.00 39.43 2.34
324 344 0.672711 GGACTTCCGTGTGCCTAACC 60.673 60.000 0.00 0.00 0.00 2.85
325 345 0.034337 GACTTCCGTGTGCCTAACCA 59.966 55.000 0.00 0.00 0.00 3.67
326 346 0.034896 ACTTCCGTGTGCCTAACCAG 59.965 55.000 0.00 0.00 0.00 4.00
327 347 0.673644 CTTCCGTGTGCCTAACCAGG 60.674 60.000 0.00 0.00 45.77 4.45
328 348 1.122632 TTCCGTGTGCCTAACCAGGA 61.123 55.000 0.00 0.00 45.91 3.86
329 349 1.375523 CCGTGTGCCTAACCAGGAC 60.376 63.158 0.00 0.00 45.91 3.85
330 350 1.375523 CGTGTGCCTAACCAGGACC 60.376 63.158 0.00 0.00 45.91 4.46
331 351 1.002502 GTGTGCCTAACCAGGACCC 60.003 63.158 0.00 0.00 45.91 4.46
332 352 2.267961 GTGCCTAACCAGGACCCG 59.732 66.667 0.00 0.00 45.91 5.28
333 353 3.006728 TGCCTAACCAGGACCCGG 61.007 66.667 0.00 0.00 45.91 5.73
334 354 4.484872 GCCTAACCAGGACCCGGC 62.485 72.222 0.00 0.00 45.91 6.13
335 355 3.793888 CCTAACCAGGACCCGGCC 61.794 72.222 0.00 0.00 45.91 6.13
336 356 4.157120 CTAACCAGGACCCGGCCG 62.157 72.222 21.04 21.04 0.00 6.13
337 357 4.700448 TAACCAGGACCCGGCCGA 62.700 66.667 30.73 0.00 0.00 5.54
352 372 2.342279 CGAAGCACCAACGGAGGA 59.658 61.111 2.13 0.00 0.00 3.71
353 373 2.027625 CGAAGCACCAACGGAGGAC 61.028 63.158 2.13 0.00 0.00 3.85
354 374 1.371558 GAAGCACCAACGGAGGACT 59.628 57.895 2.13 0.00 0.00 3.85
355 375 0.951040 GAAGCACCAACGGAGGACTG 60.951 60.000 2.13 0.00 0.00 3.51
356 376 1.696097 AAGCACCAACGGAGGACTGT 61.696 55.000 2.13 0.00 37.19 3.55
357 377 0.830444 AGCACCAACGGAGGACTGTA 60.830 55.000 2.13 0.00 34.90 2.74
358 378 0.249398 GCACCAACGGAGGACTGTAT 59.751 55.000 2.13 0.00 34.90 2.29
359 379 1.338769 GCACCAACGGAGGACTGTATT 60.339 52.381 2.13 0.00 34.90 1.89
360 380 2.618053 CACCAACGGAGGACTGTATTC 58.382 52.381 2.13 0.00 34.90 1.75
361 381 1.553704 ACCAACGGAGGACTGTATTCC 59.446 52.381 2.13 1.07 34.90 3.01
362 382 1.134491 CCAACGGAGGACTGTATTCCC 60.134 57.143 4.91 0.00 36.12 3.97
363 383 1.831736 CAACGGAGGACTGTATTCCCT 59.168 52.381 4.91 0.00 36.12 4.20
364 384 1.777941 ACGGAGGACTGTATTCCCTC 58.222 55.000 5.02 5.02 44.32 4.30
367 387 1.041437 GAGGACTGTATTCCCTCCGG 58.959 60.000 0.00 0.00 40.35 5.14
368 388 0.338814 AGGACTGTATTCCCTCCGGT 59.661 55.000 0.00 0.00 36.12 5.28
369 389 0.751452 GGACTGTATTCCCTCCGGTC 59.249 60.000 0.00 0.00 34.44 4.79
370 390 0.751452 GACTGTATTCCCTCCGGTCC 59.249 60.000 0.00 0.00 0.00 4.46
371 391 0.338814 ACTGTATTCCCTCCGGTCCT 59.661 55.000 0.00 0.00 0.00 3.85
372 392 1.273666 ACTGTATTCCCTCCGGTCCTT 60.274 52.381 0.00 0.00 0.00 3.36
373 393 1.838077 CTGTATTCCCTCCGGTCCTTT 59.162 52.381 0.00 0.00 0.00 3.11
374 394 2.238898 CTGTATTCCCTCCGGTCCTTTT 59.761 50.000 0.00 0.00 0.00 2.27
375 395 2.645797 TGTATTCCCTCCGGTCCTTTTT 59.354 45.455 0.00 0.00 0.00 1.94
376 396 3.845398 TGTATTCCCTCCGGTCCTTTTTA 59.155 43.478 0.00 0.00 0.00 1.52
377 397 2.865119 TTCCCTCCGGTCCTTTTTAC 57.135 50.000 0.00 0.00 0.00 2.01
378 398 2.034436 TCCCTCCGGTCCTTTTTACT 57.966 50.000 0.00 0.00 0.00 2.24
379 399 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
380 400 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
381 401 2.093606 CCCTCCGGTCCTTTTTACTCTC 60.094 54.545 0.00 0.00 0.00 3.20
382 402 2.093606 CCTCCGGTCCTTTTTACTCTCC 60.094 54.545 0.00 0.00 0.00 3.71
383 403 2.565834 CTCCGGTCCTTTTTACTCTCCA 59.434 50.000 0.00 0.00 0.00 3.86
384 404 3.178865 TCCGGTCCTTTTTACTCTCCAT 58.821 45.455 0.00 0.00 0.00 3.41
385 405 4.355549 TCCGGTCCTTTTTACTCTCCATA 58.644 43.478 0.00 0.00 0.00 2.74
386 406 4.966805 TCCGGTCCTTTTTACTCTCCATAT 59.033 41.667 0.00 0.00 0.00 1.78
387 407 5.427481 TCCGGTCCTTTTTACTCTCCATATT 59.573 40.000 0.00 0.00 0.00 1.28
388 408 6.612456 TCCGGTCCTTTTTACTCTCCATATTA 59.388 38.462 0.00 0.00 0.00 0.98
389 409 6.929606 CCGGTCCTTTTTACTCTCCATATTAG 59.070 42.308 0.00 0.00 0.00 1.73
390 410 7.201974 CCGGTCCTTTTTACTCTCCATATTAGA 60.202 40.741 0.00 0.00 0.00 2.10
391 411 8.202137 CGGTCCTTTTTACTCTCCATATTAGAA 58.798 37.037 0.00 0.00 0.00 2.10
402 422 9.432982 ACTCTCCATATTAGAATTCTCTGAAGT 57.567 33.333 12.24 7.38 32.70 3.01
403 423 9.912634 CTCTCCATATTAGAATTCTCTGAAGTC 57.087 37.037 12.24 0.25 32.70 3.01
404 424 9.426534 TCTCCATATTAGAATTCTCTGAAGTCA 57.573 33.333 12.24 0.00 32.70 3.41
425 445 5.715070 TCAAACTTCACAAAATTTGACCGT 58.285 33.333 13.19 1.42 36.42 4.83
426 446 6.853720 TCAAACTTCACAAAATTTGACCGTA 58.146 32.000 13.19 0.00 36.42 4.02
427 447 7.484975 TCAAACTTCACAAAATTTGACCGTAT 58.515 30.769 13.19 0.00 36.42 3.06
428 448 7.976734 TCAAACTTCACAAAATTTGACCGTATT 59.023 29.630 13.19 0.00 36.42 1.89
429 449 8.599774 CAAACTTCACAAAATTTGACCGTATTT 58.400 29.630 13.19 3.38 34.62 1.40
430 450 9.804758 AAACTTCACAAAATTTGACCGTATTTA 57.195 25.926 13.19 0.00 0.00 1.40
431 451 9.974980 AACTTCACAAAATTTGACCGTATTTAT 57.025 25.926 13.19 0.00 0.00 1.40
529 549 9.811995 ATATTGATTTCAGATTGTGAATGTTGG 57.188 29.630 0.00 0.00 44.89 3.77
530 550 6.653526 TGATTTCAGATTGTGAATGTTGGT 57.346 33.333 0.00 0.00 44.89 3.67
531 551 7.757941 TGATTTCAGATTGTGAATGTTGGTA 57.242 32.000 0.00 0.00 44.89 3.25
532 552 7.592938 TGATTTCAGATTGTGAATGTTGGTAC 58.407 34.615 0.00 0.00 44.89 3.34
533 553 7.448161 TGATTTCAGATTGTGAATGTTGGTACT 59.552 33.333 0.00 0.00 44.89 2.73
534 554 7.581213 TTTCAGATTGTGAATGTTGGTACTT 57.419 32.000 0.00 0.00 44.89 2.24
535 555 7.581213 TTCAGATTGTGAATGTTGGTACTTT 57.419 32.000 0.00 0.00 40.45 2.66
536 556 7.581213 TCAGATTGTGAATGTTGGTACTTTT 57.419 32.000 0.00 0.00 29.64 2.27
537 557 8.006298 TCAGATTGTGAATGTTGGTACTTTTT 57.994 30.769 0.00 0.00 29.64 1.94
575 595 8.842358 TCAAACTTTACGAGGATTTAACATCT 57.158 30.769 0.00 0.00 0.00 2.90
576 596 9.280174 TCAAACTTTACGAGGATTTAACATCTT 57.720 29.630 0.00 0.00 0.00 2.40
583 603 7.582435 ACGAGGATTTAACATCTTATATGCG 57.418 36.000 0.00 0.00 0.00 4.73
584 604 7.375834 ACGAGGATTTAACATCTTATATGCGA 58.624 34.615 0.00 0.00 0.00 5.10
585 605 7.870954 ACGAGGATTTAACATCTTATATGCGAA 59.129 33.333 0.00 0.00 0.00 4.70
586 606 8.162880 CGAGGATTTAACATCTTATATGCGAAC 58.837 37.037 0.00 0.00 0.00 3.95
587 607 9.209175 GAGGATTTAACATCTTATATGCGAACT 57.791 33.333 0.00 0.00 0.00 3.01
612 632 4.889832 AAAAATCGAAGGCTGAGCTATG 57.110 40.909 3.72 0.00 0.00 2.23
626 646 5.335191 GCTGAGCTATGGGAATATTTTTCCG 60.335 44.000 0.00 0.00 39.46 4.30
699 719 1.237285 CCCAAACAACCTCGGCTCAG 61.237 60.000 0.00 0.00 0.00 3.35
851 871 6.479660 AGTCGTAATATAAAATTTCCCGCGAA 59.520 34.615 8.23 0.00 0.00 4.70
852 872 6.788930 GTCGTAATATAAAATTTCCCGCGAAG 59.211 38.462 8.23 0.00 0.00 3.79
853 873 6.073657 TCGTAATATAAAATTTCCCGCGAAGG 60.074 38.462 8.23 0.00 40.63 3.46
1309 1349 1.005394 GGCGTCTCCGAAACCTTCA 60.005 57.895 0.00 0.00 35.63 3.02
1310 1350 1.289800 GGCGTCTCCGAAACCTTCAC 61.290 60.000 0.00 0.00 35.63 3.18
1311 1351 0.319641 GCGTCTCCGAAACCTTCACT 60.320 55.000 0.00 0.00 35.63 3.41
1328 1368 1.379977 CTCAGGTACCAGCTCCCGA 60.380 63.158 15.94 0.00 0.00 5.14
1362 1403 1.603802 CGCTTTGCTCCTGTTTTCTGA 59.396 47.619 0.00 0.00 0.00 3.27
1373 1414 3.255149 CCTGTTTTCTGATTCTGCAGCTT 59.745 43.478 9.47 0.00 35.86 3.74
1487 1636 8.055181 TCTTTAATTTGAATACTGAGGCTCCAT 58.945 33.333 12.86 2.18 0.00 3.41
1530 4588 5.050972 AGCGTCGTAAGCTTTATAATGCTTC 60.051 40.000 30.89 22.89 44.92 3.86
1534 4592 7.559845 GTCGTAAGCTTTATAATGCTTCTGAG 58.440 38.462 30.89 22.28 44.92 3.35
1538 4596 9.535878 GTAAGCTTTATAATGCTTCTGAGTACT 57.464 33.333 30.89 14.46 44.92 2.73
1644 4705 8.613922 AAATTAGATTTCAGGACATGGGAAAT 57.386 30.769 13.29 13.29 42.26 2.17
1648 4709 7.592885 AGATTTCAGGACATGGGAAATATTG 57.407 36.000 13.36 0.00 40.32 1.90
1650 4711 8.281531 AGATTTCAGGACATGGGAAATATTGTA 58.718 33.333 13.36 0.00 40.32 2.41
1652 4713 6.575244 TCAGGACATGGGAAATATTGTAGT 57.425 37.500 0.00 0.00 0.00 2.73
1653 4714 6.969043 TCAGGACATGGGAAATATTGTAGTT 58.031 36.000 0.00 0.00 0.00 2.24
1678 4739 8.315220 TCCCTCGTAGAAAAGGAAATATTAGT 57.685 34.615 0.00 0.00 34.09 2.24
1684 4745 7.042254 CGTAGAAAAGGAAATATTAGTTCCCCG 60.042 40.741 17.08 6.81 44.90 5.73
1715 4776 5.814188 GGCTTTCATGGATTTGATTTCCTTC 59.186 40.000 0.00 0.00 34.17 3.46
1770 4831 6.910536 TCTTCTCTCTTTTGACACTTCAAC 57.089 37.500 0.00 0.00 41.64 3.18
1771 4832 5.520288 TCTTCTCTCTTTTGACACTTCAACG 59.480 40.000 0.00 0.00 41.64 4.10
1785 4846 2.595124 TCAACGCAGAGTTTCAGACA 57.405 45.000 0.00 0.00 42.02 3.41
1793 4857 6.163476 ACGCAGAGTTTCAGACACAATATTA 58.837 36.000 0.00 0.00 0.00 0.98
1861 4928 5.977635 ACAATCATGTAGCAAGTACTAGCA 58.022 37.500 0.00 0.00 38.24 3.49
1878 4945 1.753073 AGCACTGCAAGCTCAGTTTTT 59.247 42.857 5.36 0.00 44.26 1.94
1879 4946 1.856597 GCACTGCAAGCTCAGTTTTTG 59.143 47.619 5.36 0.00 44.26 2.44
1880 4947 2.736400 GCACTGCAAGCTCAGTTTTTGT 60.736 45.455 5.36 0.00 44.26 2.83
1881 4948 2.855963 CACTGCAAGCTCAGTTTTTGTG 59.144 45.455 5.36 0.00 44.26 3.33
1882 4949 2.493278 ACTGCAAGCTCAGTTTTTGTGT 59.507 40.909 2.30 0.00 44.26 3.72
1883 4950 2.855963 CTGCAAGCTCAGTTTTTGTGTG 59.144 45.455 0.00 0.00 0.00 3.82
1884 4951 2.230992 TGCAAGCTCAGTTTTTGTGTGT 59.769 40.909 0.00 0.00 0.00 3.72
1885 4952 2.599973 GCAAGCTCAGTTTTTGTGTGTG 59.400 45.455 0.00 0.00 0.00 3.82
1886 4953 3.836949 CAAGCTCAGTTTTTGTGTGTGT 58.163 40.909 0.00 0.00 0.00 3.72
1887 4954 3.492421 AGCTCAGTTTTTGTGTGTGTG 57.508 42.857 0.00 0.00 0.00 3.82
1888 4955 2.819608 AGCTCAGTTTTTGTGTGTGTGT 59.180 40.909 0.00 0.00 0.00 3.72
1889 4956 2.916716 GCTCAGTTTTTGTGTGTGTGTG 59.083 45.455 0.00 0.00 0.00 3.82
1890 4957 3.611530 GCTCAGTTTTTGTGTGTGTGTGT 60.612 43.478 0.00 0.00 0.00 3.72
1891 4958 4.545610 CTCAGTTTTTGTGTGTGTGTGTT 58.454 39.130 0.00 0.00 0.00 3.32
1892 4959 4.938080 TCAGTTTTTGTGTGTGTGTGTTT 58.062 34.783 0.00 0.00 0.00 2.83
1893 4960 4.742167 TCAGTTTTTGTGTGTGTGTGTTTG 59.258 37.500 0.00 0.00 0.00 2.93
1894 4961 4.505922 CAGTTTTTGTGTGTGTGTGTTTGT 59.494 37.500 0.00 0.00 0.00 2.83
1895 4962 4.505922 AGTTTTTGTGTGTGTGTGTTTGTG 59.494 37.500 0.00 0.00 0.00 3.33
1896 4963 3.717400 TTTGTGTGTGTGTGTTTGTGT 57.283 38.095 0.00 0.00 0.00 3.72
1897 4964 2.695613 TGTGTGTGTGTGTTTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
1898 4965 1.950216 TGTGTGTGTGTGTTTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
1899 4966 2.287248 TGTGTGTGTGTGTTTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
1900 4967 2.031595 GTGTGTGTGTGTTTGTGTGTGA 60.032 45.455 0.00 0.00 0.00 3.58
1901 4968 2.816672 TGTGTGTGTGTTTGTGTGTGAT 59.183 40.909 0.00 0.00 0.00 3.06
1902 4969 3.170505 GTGTGTGTGTTTGTGTGTGATG 58.829 45.455 0.00 0.00 0.00 3.07
1903 4970 2.816672 TGTGTGTGTTTGTGTGTGATGT 59.183 40.909 0.00 0.00 0.00 3.06
1904 4971 3.170505 GTGTGTGTTTGTGTGTGATGTG 58.829 45.455 0.00 0.00 0.00 3.21
1905 4972 2.184448 GTGTGTTTGTGTGTGATGTGC 58.816 47.619 0.00 0.00 0.00 4.57
1906 4973 1.815003 TGTGTTTGTGTGTGATGTGCA 59.185 42.857 0.00 0.00 0.00 4.57
1907 4974 2.159407 TGTGTTTGTGTGTGATGTGCAG 60.159 45.455 0.00 0.00 0.00 4.41
1908 4975 2.090760 TGTTTGTGTGTGATGTGCAGT 58.909 42.857 0.00 0.00 0.00 4.40
1909 4976 3.064682 GTGTTTGTGTGTGATGTGCAGTA 59.935 43.478 0.00 0.00 0.00 2.74
1910 4977 3.691609 TGTTTGTGTGTGATGTGCAGTAA 59.308 39.130 0.00 0.00 0.00 2.24
1911 4978 4.156739 TGTTTGTGTGTGATGTGCAGTAAA 59.843 37.500 0.00 0.00 0.00 2.01
1912 4979 4.550577 TTGTGTGTGATGTGCAGTAAAG 57.449 40.909 0.00 0.00 0.00 1.85
1913 4980 3.540617 TGTGTGTGATGTGCAGTAAAGT 58.459 40.909 0.00 0.00 0.00 2.66
1914 4981 3.944650 TGTGTGTGATGTGCAGTAAAGTT 59.055 39.130 0.00 0.00 0.00 2.66
1915 4982 5.119694 TGTGTGTGATGTGCAGTAAAGTTA 58.880 37.500 0.00 0.00 0.00 2.24
1916 4983 5.236263 TGTGTGTGATGTGCAGTAAAGTTAG 59.764 40.000 0.00 0.00 0.00 2.34
1917 4984 4.213270 TGTGTGATGTGCAGTAAAGTTAGC 59.787 41.667 0.00 0.00 0.00 3.09
1918 4985 4.452455 GTGTGATGTGCAGTAAAGTTAGCT 59.548 41.667 0.00 0.00 0.00 3.32
1919 4986 5.637810 GTGTGATGTGCAGTAAAGTTAGCTA 59.362 40.000 0.00 0.00 0.00 3.32
1920 4987 6.313905 GTGTGATGTGCAGTAAAGTTAGCTAT 59.686 38.462 0.00 0.00 0.00 2.97
1942 5009 5.940192 TTTGTCTAATCGCATTGTCAGTT 57.060 34.783 0.00 0.00 0.00 3.16
1957 5024 7.170320 GCATTGTCAGTTCATCAGTTTGAAATT 59.830 33.333 0.00 0.00 37.36 1.82
2720 5789 3.470888 ATCTCCTGGAACGGCCCG 61.471 66.667 0.00 0.00 34.97 6.13
2768 5838 3.807622 CGTACTTCCAGAGCTTTTCAACA 59.192 43.478 0.00 0.00 0.00 3.33
2774 5844 8.273780 ACTTCCAGAGCTTTTCAACATATAAG 57.726 34.615 0.00 0.00 0.00 1.73
2890 5994 1.572941 CGACAGGTCGTTCGAGACA 59.427 57.895 13.35 0.00 46.99 3.41
3067 6180 1.179174 TCTGCGCCGCCATATACTCT 61.179 55.000 6.63 0.00 0.00 3.24
3215 6328 2.887152 GCTGTTCATGGTTTGAAGGAGT 59.113 45.455 0.00 0.00 44.89 3.85
3216 6329 3.057946 GCTGTTCATGGTTTGAAGGAGTC 60.058 47.826 0.00 0.00 44.89 3.36
3282 6398 4.688021 GTTGAGCAAGGTAGATGAGTAGG 58.312 47.826 0.00 0.00 0.00 3.18
3283 6399 4.251103 TGAGCAAGGTAGATGAGTAGGA 57.749 45.455 0.00 0.00 0.00 2.94
3359 6475 4.649088 TGGATCGATTTCTGTGATACGT 57.351 40.909 0.00 0.00 0.00 3.57
3363 6479 3.179048 TCGATTTCTGTGATACGTGCTG 58.821 45.455 0.00 0.00 0.00 4.41
3394 6510 3.995636 AGGGGAGTGATGTGTACTGTAT 58.004 45.455 0.00 0.00 0.00 2.29
3395 6511 4.362677 AGGGGAGTGATGTGTACTGTATT 58.637 43.478 0.00 0.00 0.00 1.89
3396 6512 4.406003 AGGGGAGTGATGTGTACTGTATTC 59.594 45.833 0.00 0.00 0.00 1.75
3397 6513 4.406003 GGGGAGTGATGTGTACTGTATTCT 59.594 45.833 0.00 0.00 0.00 2.40
3398 6514 5.104900 GGGGAGTGATGTGTACTGTATTCTT 60.105 44.000 0.00 0.00 0.00 2.52
3399 6515 5.812642 GGGAGTGATGTGTACTGTATTCTTG 59.187 44.000 0.00 0.00 0.00 3.02
3400 6516 6.351033 GGGAGTGATGTGTACTGTATTCTTGA 60.351 42.308 0.00 0.00 0.00 3.02
3401 6517 7.097192 GGAGTGATGTGTACTGTATTCTTGAA 58.903 38.462 0.00 0.00 0.00 2.69
3402 6518 7.602644 GGAGTGATGTGTACTGTATTCTTGAAA 59.397 37.037 0.00 0.00 0.00 2.69
3403 6519 9.155975 GAGTGATGTGTACTGTATTCTTGAAAT 57.844 33.333 0.00 0.00 0.00 2.17
3406 6522 9.098355 TGATGTGTACTGTATTCTTGAAATAGC 57.902 33.333 0.00 0.00 0.00 2.97
3407 6523 7.520119 TGTGTACTGTATTCTTGAAATAGCG 57.480 36.000 0.00 0.00 0.00 4.26
3408 6524 6.035650 TGTGTACTGTATTCTTGAAATAGCGC 59.964 38.462 0.00 0.00 0.00 5.92
3409 6525 6.255887 GTGTACTGTATTCTTGAAATAGCGCT 59.744 38.462 17.26 17.26 0.00 5.92
3410 6526 5.975410 ACTGTATTCTTGAAATAGCGCTC 57.025 39.130 16.34 0.00 0.00 5.03
3411 6527 4.811557 ACTGTATTCTTGAAATAGCGCTCC 59.188 41.667 16.34 2.18 0.00 4.70
3412 6528 5.023533 TGTATTCTTGAAATAGCGCTCCT 57.976 39.130 16.34 0.00 0.00 3.69
3413 6529 6.156748 TGTATTCTTGAAATAGCGCTCCTA 57.843 37.500 16.34 0.00 0.00 2.94
3414 6530 6.578944 TGTATTCTTGAAATAGCGCTCCTAA 58.421 36.000 16.34 0.00 0.00 2.69
3415 6531 7.045416 TGTATTCTTGAAATAGCGCTCCTAAA 58.955 34.615 16.34 0.00 0.00 1.85
3416 6532 7.551262 TGTATTCTTGAAATAGCGCTCCTAAAA 59.449 33.333 16.34 3.67 0.00 1.52
3417 6533 5.796350 TCTTGAAATAGCGCTCCTAAAAC 57.204 39.130 16.34 0.73 0.00 2.43
3418 6534 5.242434 TCTTGAAATAGCGCTCCTAAAACA 58.758 37.500 16.34 3.69 0.00 2.83
3419 6535 5.703592 TCTTGAAATAGCGCTCCTAAAACAA 59.296 36.000 16.34 11.58 0.00 2.83
3420 6536 5.291293 TGAAATAGCGCTCCTAAAACAAC 57.709 39.130 16.34 0.00 0.00 3.32
3421 6537 4.142988 TGAAATAGCGCTCCTAAAACAACG 60.143 41.667 16.34 0.00 0.00 4.10
3422 6538 1.717194 TAGCGCTCCTAAAACAACGG 58.283 50.000 16.34 0.00 0.00 4.44
3423 6539 0.034337 AGCGCTCCTAAAACAACGGA 59.966 50.000 2.64 0.00 0.00 4.69
3424 6540 0.442699 GCGCTCCTAAAACAACGGAG 59.557 55.000 0.00 0.00 45.59 4.63
3425 6541 1.076332 CGCTCCTAAAACAACGGAGG 58.924 55.000 6.67 0.00 43.56 4.30
3426 6542 1.450025 GCTCCTAAAACAACGGAGGG 58.550 55.000 6.67 0.00 43.56 4.30
3427 6543 1.271217 GCTCCTAAAACAACGGAGGGT 60.271 52.381 6.67 0.00 43.56 4.34
3428 6544 2.812983 GCTCCTAAAACAACGGAGGGTT 60.813 50.000 6.67 0.00 43.56 4.11
3429 6545 3.483421 CTCCTAAAACAACGGAGGGTTT 58.517 45.455 0.00 0.00 40.47 3.27
3430 6546 4.644498 CTCCTAAAACAACGGAGGGTTTA 58.356 43.478 0.00 0.00 40.47 2.01
3431 6547 5.245584 TCCTAAAACAACGGAGGGTTTAT 57.754 39.130 0.00 0.00 37.97 1.40
3432 6548 6.371595 TCCTAAAACAACGGAGGGTTTATA 57.628 37.500 0.00 0.00 37.97 0.98
3433 6549 6.408869 TCCTAAAACAACGGAGGGTTTATAG 58.591 40.000 0.00 0.00 37.97 1.31
3434 6550 6.013466 TCCTAAAACAACGGAGGGTTTATAGT 60.013 38.462 0.00 0.00 37.97 2.12
3435 6551 7.180051 TCCTAAAACAACGGAGGGTTTATAGTA 59.820 37.037 0.00 0.00 37.97 1.82
3436 6552 7.493645 CCTAAAACAACGGAGGGTTTATAGTAG 59.506 40.741 0.00 0.00 37.97 2.57
3437 6553 6.364568 AAACAACGGAGGGTTTATAGTAGT 57.635 37.500 0.00 0.00 37.36 2.73
3438 6554 6.364568 AACAACGGAGGGTTTATAGTAGTT 57.635 37.500 0.00 0.00 36.49 2.24
3439 6555 6.364568 ACAACGGAGGGTTTATAGTAGTTT 57.635 37.500 0.00 0.00 36.49 2.66
3440 6556 6.772605 ACAACGGAGGGTTTATAGTAGTTTT 58.227 36.000 0.00 0.00 36.49 2.43
3441 6557 7.906327 ACAACGGAGGGTTTATAGTAGTTTTA 58.094 34.615 0.00 0.00 36.49 1.52
3442 6558 7.819415 ACAACGGAGGGTTTATAGTAGTTTTAC 59.181 37.037 0.00 0.00 36.49 2.01
3443 6559 7.480760 ACGGAGGGTTTATAGTAGTTTTACA 57.519 36.000 0.00 0.00 31.96 2.41
3444 6560 7.323420 ACGGAGGGTTTATAGTAGTTTTACAC 58.677 38.462 0.00 0.00 31.96 2.90
3445 6561 7.179160 ACGGAGGGTTTATAGTAGTTTTACACT 59.821 37.037 0.00 0.00 39.87 3.55
3446 6562 7.490402 CGGAGGGTTTATAGTAGTTTTACACTG 59.510 40.741 0.00 0.00 35.97 3.66
3447 6563 7.279536 GGAGGGTTTATAGTAGTTTTACACTGC 59.720 40.741 0.00 0.00 38.38 4.40
3454 6570 5.485209 AGTAGTTTTACACTGCTAGGCTT 57.515 39.130 0.00 0.00 45.96 4.35
3455 6571 6.600882 AGTAGTTTTACACTGCTAGGCTTA 57.399 37.500 0.00 0.00 45.96 3.09
3456 6572 7.184067 AGTAGTTTTACACTGCTAGGCTTAT 57.816 36.000 0.00 0.00 45.96 1.73
3457 6573 7.042335 AGTAGTTTTACACTGCTAGGCTTATG 58.958 38.462 0.00 0.00 45.96 1.90
3458 6574 5.805728 AGTTTTACACTGCTAGGCTTATGT 58.194 37.500 0.00 0.00 32.83 2.29
3459 6575 5.875359 AGTTTTACACTGCTAGGCTTATGTC 59.125 40.000 0.00 0.00 32.83 3.06
3460 6576 2.586258 ACACTGCTAGGCTTATGTCG 57.414 50.000 0.00 0.00 0.00 4.35
3461 6577 2.100197 ACACTGCTAGGCTTATGTCGA 58.900 47.619 0.00 0.00 0.00 4.20
3462 6578 2.695666 ACACTGCTAGGCTTATGTCGAT 59.304 45.455 0.00 0.00 0.00 3.59
3463 6579 3.133003 ACACTGCTAGGCTTATGTCGATT 59.867 43.478 0.00 0.00 0.00 3.34
3464 6580 3.492383 CACTGCTAGGCTTATGTCGATTG 59.508 47.826 0.00 0.00 0.00 2.67
3465 6581 3.133003 ACTGCTAGGCTTATGTCGATTGT 59.867 43.478 0.00 0.00 0.00 2.71
3466 6582 3.457234 TGCTAGGCTTATGTCGATTGTG 58.543 45.455 0.00 0.00 0.00 3.33
3467 6583 3.118775 TGCTAGGCTTATGTCGATTGTGT 60.119 43.478 0.00 0.00 0.00 3.72
3468 6584 3.871594 GCTAGGCTTATGTCGATTGTGTT 59.128 43.478 0.00 0.00 0.00 3.32
3469 6585 4.332819 GCTAGGCTTATGTCGATTGTGTTT 59.667 41.667 0.00 0.00 0.00 2.83
3470 6586 4.685169 AGGCTTATGTCGATTGTGTTTG 57.315 40.909 0.00 0.00 0.00 2.93
3471 6587 3.440173 AGGCTTATGTCGATTGTGTTTGG 59.560 43.478 0.00 0.00 0.00 3.28
3472 6588 3.171277 GCTTATGTCGATTGTGTTTGGC 58.829 45.455 0.00 0.00 0.00 4.52
3473 6589 3.758300 CTTATGTCGATTGTGTTTGGCC 58.242 45.455 0.00 0.00 0.00 5.36
3474 6590 1.614996 ATGTCGATTGTGTTTGGCCA 58.385 45.000 0.00 0.00 0.00 5.36
3475 6591 1.614996 TGTCGATTGTGTTTGGCCAT 58.385 45.000 6.09 0.00 0.00 4.40
3476 6592 1.539388 TGTCGATTGTGTTTGGCCATC 59.461 47.619 6.09 3.51 0.00 3.51
3477 6593 1.539388 GTCGATTGTGTTTGGCCATCA 59.461 47.619 6.09 6.66 0.00 3.07
3478 6594 1.539388 TCGATTGTGTTTGGCCATCAC 59.461 47.619 25.27 25.27 0.00 3.06
3479 6595 1.269174 CGATTGTGTTTGGCCATCACA 59.731 47.619 28.63 28.63 39.76 3.58
3480 6596 2.669113 CGATTGTGTTTGGCCATCACAG 60.669 50.000 29.64 20.76 41.86 3.66
3481 6597 0.388659 TTGTGTTTGGCCATCACAGC 59.611 50.000 29.64 19.54 41.86 4.40
3482 6598 0.754587 TGTGTTTGGCCATCACAGCA 60.755 50.000 28.63 20.34 37.20 4.41
3483 6599 0.604578 GTGTTTGGCCATCACAGCAT 59.395 50.000 26.35 0.00 33.04 3.79
3484 6600 0.889994 TGTTTGGCCATCACAGCATC 59.110 50.000 6.09 0.00 0.00 3.91
3485 6601 1.180029 GTTTGGCCATCACAGCATCT 58.820 50.000 6.09 0.00 0.00 2.90
3486 6602 1.133790 GTTTGGCCATCACAGCATCTC 59.866 52.381 6.09 0.00 0.00 2.75
3487 6603 0.622136 TTGGCCATCACAGCATCTCT 59.378 50.000 6.09 0.00 0.00 3.10
3488 6604 1.499368 TGGCCATCACAGCATCTCTA 58.501 50.000 0.00 0.00 0.00 2.43
3489 6605 1.415289 TGGCCATCACAGCATCTCTAG 59.585 52.381 0.00 0.00 0.00 2.43
3490 6606 1.510776 GCCATCACAGCATCTCTAGC 58.489 55.000 0.00 0.00 0.00 3.42
3491 6607 1.202615 GCCATCACAGCATCTCTAGCA 60.203 52.381 0.00 0.00 0.00 3.49
3492 6608 2.756829 CCATCACAGCATCTCTAGCAG 58.243 52.381 0.00 0.00 0.00 4.24
3493 6609 2.364647 CCATCACAGCATCTCTAGCAGA 59.635 50.000 0.00 0.00 34.78 4.26
3494 6610 3.007074 CCATCACAGCATCTCTAGCAGAT 59.993 47.826 0.00 0.44 43.33 2.90
3495 6611 4.239304 CATCACAGCATCTCTAGCAGATC 58.761 47.826 2.74 0.00 40.20 2.75
3496 6612 2.627221 TCACAGCATCTCTAGCAGATCC 59.373 50.000 0.00 0.00 40.20 3.36
3497 6613 2.629137 CACAGCATCTCTAGCAGATCCT 59.371 50.000 0.00 0.00 40.20 3.24
3498 6614 3.069872 CACAGCATCTCTAGCAGATCCTT 59.930 47.826 0.00 0.00 40.20 3.36
3499 6615 3.069872 ACAGCATCTCTAGCAGATCCTTG 59.930 47.826 0.00 4.71 40.20 3.61
3500 6616 3.321396 CAGCATCTCTAGCAGATCCTTGA 59.679 47.826 0.00 0.00 40.20 3.02
3501 6617 3.575256 AGCATCTCTAGCAGATCCTTGAG 59.425 47.826 4.75 4.75 40.20 3.02
3502 6618 3.306225 GCATCTCTAGCAGATCCTTGAGG 60.306 52.174 9.37 0.00 40.20 3.86
3514 6630 3.284793 TCCTTGAGGAAAACGTTTGGA 57.715 42.857 15.46 11.83 42.18 3.53
3515 6631 3.211045 TCCTTGAGGAAAACGTTTGGAG 58.789 45.455 15.46 6.47 42.18 3.86
3516 6632 3.118186 TCCTTGAGGAAAACGTTTGGAGA 60.118 43.478 15.46 0.95 42.18 3.71
3517 6633 3.003378 CCTTGAGGAAAACGTTTGGAGAC 59.997 47.826 15.46 6.44 37.39 3.36
3525 6641 4.011517 GTTTGGAGACCCGGCCGA 62.012 66.667 30.73 0.00 34.29 5.54
3531 6647 4.083862 AGACCCGGCCGAAGCTTC 62.084 66.667 30.73 16.84 39.73 3.86
3552 6668 4.063967 CGGTCGCCTGCTACCACA 62.064 66.667 12.61 0.00 35.35 4.17
3560 6676 1.153745 CTGCTACCACACGCTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
3561 6677 1.599606 CTGCTACCACACGCTCCTCT 61.600 60.000 0.00 0.00 0.00 3.69
3565 6681 2.767505 CTACCACACGCTCCTCTTTTT 58.232 47.619 0.00 0.00 0.00 1.94
3575 6691 1.376037 CCTCTTTTTCGCGAGCCCT 60.376 57.895 9.59 0.00 0.00 5.19
3585 6701 3.880846 CGAGCCCTGCAAATCGCC 61.881 66.667 0.00 0.00 41.33 5.54
3610 6726 0.109342 CCCGCTGATAGGCCAATCTT 59.891 55.000 5.01 0.00 0.00 2.40
3611 6727 1.233019 CCGCTGATAGGCCAATCTTG 58.767 55.000 5.01 0.00 0.00 3.02
3614 6730 1.869767 GCTGATAGGCCAATCTTGTCG 59.130 52.381 5.01 0.00 0.00 4.35
3634 6750 2.783288 CGAGGCCGTTCTCTACCCC 61.783 68.421 0.00 0.00 0.00 4.95
3635 6751 2.365237 AGGCCGTTCTCTACCCCC 60.365 66.667 0.00 0.00 0.00 5.40
3644 6760 4.892291 TCTACCCCCGCATCCCCC 62.892 72.222 0.00 0.00 0.00 5.40
3680 6796 2.998279 GCTGCAGCCCAATTTCGCT 61.998 57.895 28.76 0.00 35.10 4.93
3757 6873 3.359523 CGGTGAGGTCGTCGTCCA 61.360 66.667 11.13 0.00 0.00 4.02
3758 6874 2.257676 GGTGAGGTCGTCGTCCAC 59.742 66.667 11.13 5.21 0.00 4.02
3759 6875 2.266627 GGTGAGGTCGTCGTCCACT 61.267 63.158 11.13 0.00 0.00 4.00
3763 6879 2.733593 GGTCGTCGTCCACTGCAC 60.734 66.667 3.49 0.00 0.00 4.57
3765 6881 3.281395 TCGTCGTCCACTGCACGA 61.281 61.111 0.00 0.00 43.85 4.35
3793 6909 3.678965 TTCTCCTAGCTCACCATCTCT 57.321 47.619 0.00 0.00 0.00 3.10
3803 6919 1.751351 TCACCATCTCTAGTTCCAGCG 59.249 52.381 0.00 0.00 0.00 5.18
3816 6946 0.690762 TCCAGCGGTTTTCCTAGCTT 59.309 50.000 0.00 0.00 35.11 3.74
3839 6969 2.413837 GTGGACGAGTTGCATAACTGT 58.586 47.619 0.00 0.00 46.79 3.55
3852 6982 0.036164 TAACTGTGACGGCAAGGCAT 59.964 50.000 0.00 0.00 41.88 4.40
3875 7005 4.749310 AGGCACGAGAAGCTGCGG 62.749 66.667 8.46 0.00 33.94 5.69
3903 7033 0.323725 GTGCACCTGACATGGGGATT 60.324 55.000 5.22 0.00 30.43 3.01
3923 7053 0.988145 GGATGGGAGGGGACATCACA 60.988 60.000 6.94 0.00 44.01 3.58
3928 7058 0.618968 GGAGGGGACATCACAGGAGT 60.619 60.000 0.00 0.00 0.00 3.85
3964 7094 3.366273 CGGCATCACAAATTGCTACAACT 60.366 43.478 0.00 0.00 38.88 3.16
3965 7095 3.922240 GGCATCACAAATTGCTACAACTG 59.078 43.478 0.00 0.00 38.88 3.16
3966 7096 3.922240 GCATCACAAATTGCTACAACTGG 59.078 43.478 0.00 0.00 35.95 4.00
3967 7097 3.641437 TCACAAATTGCTACAACTGGC 57.359 42.857 0.00 0.00 0.00 4.85
3968 7098 2.295909 TCACAAATTGCTACAACTGGCC 59.704 45.455 0.00 0.00 0.00 5.36
3969 7099 1.618343 ACAAATTGCTACAACTGGCCC 59.382 47.619 0.00 0.00 0.00 5.80
3970 7100 1.066929 CAAATTGCTACAACTGGCCCC 60.067 52.381 0.00 0.00 0.00 5.80
3971 7101 0.614697 AATTGCTACAACTGGCCCCC 60.615 55.000 0.00 0.00 0.00 5.40
3972 7102 1.799157 ATTGCTACAACTGGCCCCCA 61.799 55.000 0.00 0.00 0.00 4.96
3973 7103 1.799157 TTGCTACAACTGGCCCCCAT 61.799 55.000 0.00 0.00 30.82 4.00
3974 7104 1.453928 GCTACAACTGGCCCCCATC 60.454 63.158 0.00 0.00 30.82 3.51
3975 7105 1.227383 CTACAACTGGCCCCCATCC 59.773 63.158 0.00 0.00 30.82 3.51
3976 7106 2.608970 CTACAACTGGCCCCCATCCG 62.609 65.000 0.00 0.00 30.82 4.18
3977 7107 4.820744 CAACTGGCCCCCATCCGG 62.821 72.222 0.00 0.00 36.07 5.14
3983 7113 3.804329 GCCCCCATCCGGCTACAA 61.804 66.667 0.00 0.00 43.48 2.41
3984 7114 2.192175 CCCCCATCCGGCTACAAC 59.808 66.667 0.00 0.00 0.00 3.32
4030 7204 2.146342 CCATGAAGATACATCCCGCAC 58.854 52.381 0.00 0.00 0.00 5.34
4033 7207 2.905075 TGAAGATACATCCCGCACAAG 58.095 47.619 0.00 0.00 0.00 3.16
4050 7226 3.066203 CACAAGAAAAAGCTACAACCGGT 59.934 43.478 0.00 0.00 0.00 5.28
4056 7233 2.531522 AAGCTACAACCGGTAAACGT 57.468 45.000 8.00 5.77 42.24 3.99
4107 7285 0.394565 AAGCGAGAAGGTGAAGCTGT 59.605 50.000 0.00 0.00 38.28 4.40
4138 7316 1.296392 CAACTGTGAGCATCGGGGA 59.704 57.895 0.00 0.00 38.61 4.81
4152 7330 4.241555 GGGATGCGACGATGGCCT 62.242 66.667 3.32 0.00 0.00 5.19
4169 7347 2.925706 TGTGGGCCGTGGAAGCTA 60.926 61.111 0.00 0.00 0.00 3.32
4214 7392 1.818674 CCGCCCAAGAAAAAGCTACAT 59.181 47.619 0.00 0.00 0.00 2.29
4215 7393 2.415893 CCGCCCAAGAAAAAGCTACATG 60.416 50.000 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.042686 TGCTTCTGAACACAGCTTGT 57.957 45.000 1.28 0.00 41.74 3.16
5 6 3.797865 GCATTTGCTTCTGAACACAGCTT 60.798 43.478 0.00 0.00 38.21 3.74
6 7 2.288030 GCATTTGCTTCTGAACACAGCT 60.288 45.455 0.00 0.00 38.21 4.24
7 8 2.056577 GCATTTGCTTCTGAACACAGC 58.943 47.619 0.00 0.00 38.21 4.40
8 9 2.034939 TGGCATTTGCTTCTGAACACAG 59.965 45.455 2.12 0.00 41.70 3.66
9 10 2.030371 TGGCATTTGCTTCTGAACACA 58.970 42.857 2.12 0.00 41.70 3.72
10 11 2.798976 TGGCATTTGCTTCTGAACAC 57.201 45.000 2.12 0.00 41.70 3.32
15 16 2.157834 TTGCTTGGCATTTGCTTCTG 57.842 45.000 2.12 0.00 38.76 3.02
90 91 1.153086 GTTCATCTCCATGCCGCCT 60.153 57.895 0.00 0.00 0.00 5.52
152 153 0.463833 GGGGCCTTAAGGTGTCATCG 60.464 60.000 22.55 0.00 37.57 3.84
210 211 1.613437 CAAGGACCAAAAGATTGCCGT 59.387 47.619 0.00 0.00 35.10 5.68
245 246 2.824936 TCAGACTTGAGAAGCTCCTCTG 59.175 50.000 0.27 0.00 34.38 3.35
333 353 3.423154 CTCCGTTGGTGCTTCGGC 61.423 66.667 0.00 0.00 43.35 5.54
334 354 2.742372 CCTCCGTTGGTGCTTCGG 60.742 66.667 0.00 0.00 44.76 4.30
335 355 2.027625 GTCCTCCGTTGGTGCTTCG 61.028 63.158 0.00 0.00 0.00 3.79
336 356 0.951040 CAGTCCTCCGTTGGTGCTTC 60.951 60.000 0.00 0.00 0.00 3.86
337 357 1.071471 CAGTCCTCCGTTGGTGCTT 59.929 57.895 0.00 0.00 0.00 3.91
338 358 0.830444 TACAGTCCTCCGTTGGTGCT 60.830 55.000 0.00 0.00 0.00 4.40
339 359 0.249398 ATACAGTCCTCCGTTGGTGC 59.751 55.000 0.00 0.00 0.00 5.01
340 360 2.618053 GAATACAGTCCTCCGTTGGTG 58.382 52.381 0.00 0.00 0.00 4.17
341 361 1.553704 GGAATACAGTCCTCCGTTGGT 59.446 52.381 0.00 0.00 34.56 3.67
342 362 1.134491 GGGAATACAGTCCTCCGTTGG 60.134 57.143 0.00 0.00 37.85 3.77
343 363 1.831736 AGGGAATACAGTCCTCCGTTG 59.168 52.381 0.00 0.00 37.85 4.10
344 364 2.108970 GAGGGAATACAGTCCTCCGTT 58.891 52.381 0.00 0.00 40.76 4.44
345 365 1.777941 GAGGGAATACAGTCCTCCGT 58.222 55.000 0.00 0.00 40.76 4.69
362 382 2.565834 TGGAGAGTAAAAAGGACCGGAG 59.434 50.000 9.46 0.00 0.00 4.63
363 383 2.612000 TGGAGAGTAAAAAGGACCGGA 58.388 47.619 9.46 0.00 0.00 5.14
364 384 3.629142 ATGGAGAGTAAAAAGGACCGG 57.371 47.619 0.00 0.00 0.00 5.28
365 385 7.723324 TCTAATATGGAGAGTAAAAAGGACCG 58.277 38.462 0.00 0.00 0.00 4.79
376 396 9.432982 ACTTCAGAGAATTCTAATATGGAGAGT 57.567 33.333 18.03 12.23 30.73 3.24
377 397 9.912634 GACTTCAGAGAATTCTAATATGGAGAG 57.087 37.037 18.03 11.83 30.73 3.20
378 398 9.426534 TGACTTCAGAGAATTCTAATATGGAGA 57.573 33.333 18.03 4.20 30.73 3.71
402 422 5.715070 ACGGTCAAATTTTGTGAAGTTTGA 58.285 33.333 8.89 5.93 44.28 2.69
403 423 7.692908 ATACGGTCAAATTTTGTGAAGTTTG 57.307 32.000 8.89 2.02 41.29 2.93
404 424 8.710835 AAATACGGTCAAATTTTGTGAAGTTT 57.289 26.923 8.89 3.28 0.00 2.66
405 425 9.974980 ATAAATACGGTCAAATTTTGTGAAGTT 57.025 25.926 8.89 1.50 0.00 2.66
503 523 9.811995 CCAACATTCACAATCTGAAATCAATAT 57.188 29.630 0.00 0.00 42.37 1.28
504 524 8.805175 ACCAACATTCACAATCTGAAATCAATA 58.195 29.630 0.00 0.00 42.37 1.90
505 525 7.673180 ACCAACATTCACAATCTGAAATCAAT 58.327 30.769 0.00 0.00 42.37 2.57
506 526 7.053316 ACCAACATTCACAATCTGAAATCAA 57.947 32.000 0.00 0.00 42.37 2.57
507 527 6.653526 ACCAACATTCACAATCTGAAATCA 57.346 33.333 0.00 0.00 42.37 2.57
508 528 7.820648 AGTACCAACATTCACAATCTGAAATC 58.179 34.615 0.00 0.00 42.37 2.17
509 529 7.765695 AGTACCAACATTCACAATCTGAAAT 57.234 32.000 0.00 0.00 42.37 2.17
510 530 7.581213 AAGTACCAACATTCACAATCTGAAA 57.419 32.000 0.00 0.00 42.37 2.69
511 531 7.581213 AAAGTACCAACATTCACAATCTGAA 57.419 32.000 0.00 0.00 43.28 3.02
512 532 7.581213 AAAAGTACCAACATTCACAATCTGA 57.419 32.000 0.00 0.00 0.00 3.27
549 569 9.449719 AGATGTTAAATCCTCGTAAAGTTTGAT 57.550 29.630 0.00 0.00 0.00 2.57
550 570 8.842358 AGATGTTAAATCCTCGTAAAGTTTGA 57.158 30.769 0.00 0.00 0.00 2.69
557 577 9.135843 CGCATATAAGATGTTAAATCCTCGTAA 57.864 33.333 0.00 0.00 0.00 3.18
558 578 8.517056 TCGCATATAAGATGTTAAATCCTCGTA 58.483 33.333 0.00 0.00 0.00 3.43
559 579 7.375834 TCGCATATAAGATGTTAAATCCTCGT 58.624 34.615 0.00 0.00 0.00 4.18
560 580 7.812309 TCGCATATAAGATGTTAAATCCTCG 57.188 36.000 0.00 0.00 0.00 4.63
561 581 9.209175 AGTTCGCATATAAGATGTTAAATCCTC 57.791 33.333 0.00 0.00 0.00 3.71
591 611 3.629398 CCATAGCTCAGCCTTCGATTTTT 59.371 43.478 0.00 0.00 0.00 1.94
592 612 3.209410 CCATAGCTCAGCCTTCGATTTT 58.791 45.455 0.00 0.00 0.00 1.82
593 613 2.486191 CCCATAGCTCAGCCTTCGATTT 60.486 50.000 0.00 0.00 0.00 2.17
594 614 1.071385 CCCATAGCTCAGCCTTCGATT 59.929 52.381 0.00 0.00 0.00 3.34
595 615 0.683973 CCCATAGCTCAGCCTTCGAT 59.316 55.000 0.00 0.00 0.00 3.59
596 616 0.397114 TCCCATAGCTCAGCCTTCGA 60.397 55.000 0.00 0.00 0.00 3.71
597 617 0.465705 TTCCCATAGCTCAGCCTTCG 59.534 55.000 0.00 0.00 0.00 3.79
598 618 2.947127 ATTCCCATAGCTCAGCCTTC 57.053 50.000 0.00 0.00 0.00 3.46
599 619 5.330648 AAATATTCCCATAGCTCAGCCTT 57.669 39.130 0.00 0.00 0.00 4.35
600 620 5.330648 AAAATATTCCCATAGCTCAGCCT 57.669 39.130 0.00 0.00 0.00 4.58
601 621 5.047731 GGAAAAATATTCCCATAGCTCAGCC 60.048 44.000 0.00 0.00 32.48 4.85
602 622 5.335191 CGGAAAAATATTCCCATAGCTCAGC 60.335 44.000 0.00 0.00 35.17 4.26
612 632 2.289820 GCGAGGACGGAAAAATATTCCC 59.710 50.000 1.83 0.00 40.15 3.97
626 646 2.501610 GTGGATGGAGGCGAGGAC 59.498 66.667 0.00 0.00 0.00 3.85
651 671 3.056328 GGTTCCGCTTCTGTGGGC 61.056 66.667 0.00 0.00 43.72 5.36
687 707 0.036294 GGTAAAGCTGAGCCGAGGTT 60.036 55.000 0.00 0.00 35.16 3.50
699 719 0.725117 CGTGGATCGTTGGGTAAAGC 59.275 55.000 0.00 0.00 34.52 3.51
851 871 0.998945 CCTCTCCTCTCCTCTCCCCT 60.999 65.000 0.00 0.00 0.00 4.79
852 872 0.996762 TCCTCTCCTCTCCTCTCCCC 60.997 65.000 0.00 0.00 0.00 4.81
853 873 0.478507 CTCCTCTCCTCTCCTCTCCC 59.521 65.000 0.00 0.00 0.00 4.30
854 874 1.143073 GTCTCCTCTCCTCTCCTCTCC 59.857 61.905 0.00 0.00 0.00 3.71
855 875 1.143073 GGTCTCCTCTCCTCTCCTCTC 59.857 61.905 0.00 0.00 0.00 3.20
858 878 0.254107 AGGGTCTCCTCTCCTCTCCT 60.254 60.000 0.00 0.00 39.80 3.69
1107 1147 2.352001 CCGATCTCGCGGTACACG 60.352 66.667 6.13 6.46 46.07 4.49
1309 1349 1.682684 CGGGAGCTGGTACCTGAGT 60.683 63.158 21.97 8.26 34.76 3.41
1310 1350 1.379977 TCGGGAGCTGGTACCTGAG 60.380 63.158 21.97 8.89 36.75 3.35
1311 1351 1.681327 GTCGGGAGCTGGTACCTGA 60.681 63.158 21.97 2.69 38.97 3.86
1373 1414 0.392863 CCCCAACTCGACATGCATCA 60.393 55.000 0.00 0.00 0.00 3.07
1487 1636 6.480981 CGACGCTTCCTAAATAAAATCCCTAA 59.519 38.462 0.00 0.00 0.00 2.69
1502 1651 3.521947 ATAAAGCTTACGACGCTTCCT 57.478 42.857 0.00 1.10 46.24 3.36
1530 4588 2.064762 GCTTGCTGTGTCAGTACTCAG 58.935 52.381 5.20 5.20 45.71 3.35
1534 4592 1.528586 CTGTGCTTGCTGTGTCAGTAC 59.471 52.381 0.00 0.00 33.43 2.73
1538 4596 0.178767 AGACTGTGCTTGCTGTGTCA 59.821 50.000 11.95 0.00 0.00 3.58
1621 4682 9.887862 AATATTTCCCATGTCCTGAAATCTAAT 57.112 29.630 10.93 0.00 38.99 1.73
1644 4705 6.664816 TCCTTTTCTACGAGGGAACTACAATA 59.335 38.462 0.00 0.00 44.43 1.90
1648 4709 5.397142 TTCCTTTTCTACGAGGGAACTAC 57.603 43.478 0.00 0.00 44.43 2.73
1652 4713 8.765517 ACTAATATTTCCTTTTCTACGAGGGAA 58.234 33.333 0.00 0.00 35.06 3.97
1653 4714 8.315220 ACTAATATTTCCTTTTCTACGAGGGA 57.685 34.615 0.00 0.00 33.73 4.20
1661 4722 6.602009 CACGGGGAACTAATATTTCCTTTTCT 59.398 38.462 8.92 0.00 42.10 2.52
1678 4739 1.456705 AAAGCCAAAGCACGGGGAA 60.457 52.632 0.00 0.00 43.56 3.97
1684 4745 3.323751 AATCCATGAAAGCCAAAGCAC 57.676 42.857 0.00 0.00 43.56 4.40
1715 4776 5.236911 CCTGGATTTTCACATGTTTGTTTGG 59.763 40.000 0.00 0.00 32.34 3.28
1770 4831 5.536554 AATATTGTGTCTGAAACTCTGCG 57.463 39.130 0.00 0.00 0.00 5.18
1771 4832 7.118390 AGTGTAATATTGTGTCTGAAACTCTGC 59.882 37.037 0.00 0.00 0.00 4.26
1824 4888 9.669353 GCTACATGATTGTCCAAAAATATACTG 57.331 33.333 0.00 0.00 37.28 2.74
1825 4889 9.407380 TGCTACATGATTGTCCAAAAATATACT 57.593 29.630 0.00 0.00 37.28 2.12
1828 4892 8.752187 ACTTGCTACATGATTGTCCAAAAATAT 58.248 29.630 0.00 0.00 37.28 1.28
1874 4941 4.268644 CACACAAACACACACACACAAAAA 59.731 37.500 0.00 0.00 0.00 1.94
1878 4945 1.950216 ACACACAAACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
1879 4946 2.031595 TCACACACAAACACACACACAC 60.032 45.455 0.00 0.00 0.00 3.82
1880 4947 2.222027 TCACACACAAACACACACACA 58.778 42.857 0.00 0.00 0.00 3.72
1881 4948 2.979401 TCACACACAAACACACACAC 57.021 45.000 0.00 0.00 0.00 3.82
1882 4949 2.816672 ACATCACACACAAACACACACA 59.183 40.909 0.00 0.00 0.00 3.72
1883 4950 3.170505 CACATCACACACAAACACACAC 58.829 45.455 0.00 0.00 0.00 3.82
1884 4951 2.415224 GCACATCACACACAAACACACA 60.415 45.455 0.00 0.00 0.00 3.72
1885 4952 2.184448 GCACATCACACACAAACACAC 58.816 47.619 0.00 0.00 0.00 3.82
1886 4953 1.815003 TGCACATCACACACAAACACA 59.185 42.857 0.00 0.00 0.00 3.72
1887 4954 2.159393 ACTGCACATCACACACAAACAC 60.159 45.455 0.00 0.00 0.00 3.32
1888 4955 2.090760 ACTGCACATCACACACAAACA 58.909 42.857 0.00 0.00 0.00 2.83
1889 4956 2.849880 ACTGCACATCACACACAAAC 57.150 45.000 0.00 0.00 0.00 2.93
1890 4957 4.397730 ACTTTACTGCACATCACACACAAA 59.602 37.500 0.00 0.00 0.00 2.83
1891 4958 3.944650 ACTTTACTGCACATCACACACAA 59.055 39.130 0.00 0.00 0.00 3.33
1892 4959 3.540617 ACTTTACTGCACATCACACACA 58.459 40.909 0.00 0.00 0.00 3.72
1893 4960 4.552166 AACTTTACTGCACATCACACAC 57.448 40.909 0.00 0.00 0.00 3.82
1894 4961 4.213270 GCTAACTTTACTGCACATCACACA 59.787 41.667 0.00 0.00 0.00 3.72
1895 4962 4.452455 AGCTAACTTTACTGCACATCACAC 59.548 41.667 0.00 0.00 0.00 3.82
1896 4963 4.641396 AGCTAACTTTACTGCACATCACA 58.359 39.130 0.00 0.00 0.00 3.58
1897 4964 6.910536 ATAGCTAACTTTACTGCACATCAC 57.089 37.500 0.00 0.00 0.00 3.06
1898 4965 7.390440 ACAAATAGCTAACTTTACTGCACATCA 59.610 33.333 0.00 0.00 0.00 3.07
1899 4966 7.752695 ACAAATAGCTAACTTTACTGCACATC 58.247 34.615 0.00 0.00 0.00 3.06
1900 4967 7.607991 AGACAAATAGCTAACTTTACTGCACAT 59.392 33.333 0.00 0.00 0.00 3.21
1901 4968 6.934645 AGACAAATAGCTAACTTTACTGCACA 59.065 34.615 0.00 0.00 0.00 4.57
1902 4969 7.365840 AGACAAATAGCTAACTTTACTGCAC 57.634 36.000 0.00 0.00 0.00 4.57
1903 4970 9.667107 ATTAGACAAATAGCTAACTTTACTGCA 57.333 29.630 0.00 0.00 30.17 4.41
1906 4973 9.032420 GCGATTAGACAAATAGCTAACTTTACT 57.968 33.333 0.00 1.53 41.48 2.24
1907 4974 8.814235 TGCGATTAGACAAATAGCTAACTTTAC 58.186 33.333 0.00 0.00 44.08 2.01
1908 4975 8.936070 TGCGATTAGACAAATAGCTAACTTTA 57.064 30.769 0.00 0.00 44.08 1.85
1909 4976 7.843490 TGCGATTAGACAAATAGCTAACTTT 57.157 32.000 0.00 0.00 44.08 2.66
1910 4977 8.338259 CAATGCGATTAGACAAATAGCTAACTT 58.662 33.333 0.00 0.00 44.08 2.66
1911 4978 7.495934 ACAATGCGATTAGACAAATAGCTAACT 59.504 33.333 0.00 0.00 44.08 2.24
1912 4979 7.630924 ACAATGCGATTAGACAAATAGCTAAC 58.369 34.615 0.00 0.00 44.08 2.34
1913 4980 7.494298 TGACAATGCGATTAGACAAATAGCTAA 59.506 33.333 0.00 0.00 44.08 3.09
1914 4981 6.983890 TGACAATGCGATTAGACAAATAGCTA 59.016 34.615 0.00 0.00 44.08 3.32
1915 4982 5.817296 TGACAATGCGATTAGACAAATAGCT 59.183 36.000 0.00 0.00 44.08 3.32
1916 4983 6.048073 TGACAATGCGATTAGACAAATAGC 57.952 37.500 0.00 0.00 44.04 2.97
1917 4984 7.239166 ACTGACAATGCGATTAGACAAATAG 57.761 36.000 0.00 0.00 0.00 1.73
1918 4985 7.333174 TGAACTGACAATGCGATTAGACAAATA 59.667 33.333 0.00 0.00 0.00 1.40
1919 4986 6.149308 TGAACTGACAATGCGATTAGACAAAT 59.851 34.615 0.00 0.00 0.00 2.32
1920 4987 5.468409 TGAACTGACAATGCGATTAGACAAA 59.532 36.000 0.00 0.00 0.00 2.83
1931 4998 5.112220 TCAAACTGATGAACTGACAATGC 57.888 39.130 0.00 0.00 0.00 3.56
1942 5009 7.111247 ACAAGTGGAAATTTCAAACTGATGA 57.889 32.000 20.36 0.00 0.00 2.92
1957 5024 4.154176 TGCTACCTACAGTACAAGTGGAA 58.846 43.478 0.00 0.00 0.00 3.53
2222 5291 0.402121 AGAAGAACCAGTTGAGGGCC 59.598 55.000 0.00 0.00 0.00 5.80
2417 5486 2.047443 GGACGCGAAGGAGGAGAGT 61.047 63.158 15.93 0.00 0.00 3.24
2720 5789 2.415512 CGAGGCTTACAAGTTTGTAGCC 59.584 50.000 23.33 23.33 46.50 3.93
2751 5820 8.896744 CATCTTATATGTTGAAAAGCTCTGGAA 58.103 33.333 0.00 0.00 0.00 3.53
2752 5821 7.500227 CCATCTTATATGTTGAAAAGCTCTGGA 59.500 37.037 0.00 0.00 0.00 3.86
2768 5838 7.290110 TGAATGACGAGTGTCCATCTTATAT 57.710 36.000 0.00 0.00 44.86 0.86
2774 5844 3.308053 CACATGAATGACGAGTGTCCATC 59.692 47.826 0.00 0.00 44.86 3.51
2890 5994 2.729862 GCGAACGACGACAGCACT 60.730 61.111 0.00 0.00 45.77 4.40
2979 6083 4.452733 CGTTCTCCCGGTCCAGCC 62.453 72.222 0.00 0.00 0.00 4.85
3196 6309 3.138304 CGACTCCTTCAAACCATGAACA 58.862 45.455 0.00 0.00 43.08 3.18
3282 6398 4.201881 CCGGGTTCCGTAGAATTCAAATTC 60.202 45.833 8.44 7.27 46.80 2.17
3283 6399 3.692593 CCGGGTTCCGTAGAATTCAAATT 59.307 43.478 8.44 0.00 46.80 1.82
3376 6492 6.631016 TCAAGAATACAGTACACATCACTCC 58.369 40.000 0.00 0.00 0.00 3.85
3394 6510 5.703592 TGTTTTAGGAGCGCTATTTCAAGAA 59.296 36.000 11.50 0.00 0.00 2.52
3395 6511 5.242434 TGTTTTAGGAGCGCTATTTCAAGA 58.758 37.500 11.50 0.00 0.00 3.02
3396 6512 5.545658 TGTTTTAGGAGCGCTATTTCAAG 57.454 39.130 11.50 0.00 0.00 3.02
3397 6513 5.615984 CGTTGTTTTAGGAGCGCTATTTCAA 60.616 40.000 11.50 7.28 0.00 2.69
3398 6514 4.142988 CGTTGTTTTAGGAGCGCTATTTCA 60.143 41.667 11.50 0.62 0.00 2.69
3399 6515 4.331962 CGTTGTTTTAGGAGCGCTATTTC 58.668 43.478 11.50 0.00 0.00 2.17
3400 6516 3.126343 CCGTTGTTTTAGGAGCGCTATTT 59.874 43.478 11.50 0.59 0.00 1.40
3401 6517 2.676342 CCGTTGTTTTAGGAGCGCTATT 59.324 45.455 11.50 3.69 0.00 1.73
3402 6518 2.093869 TCCGTTGTTTTAGGAGCGCTAT 60.094 45.455 11.50 4.52 0.00 2.97
3403 6519 1.273048 TCCGTTGTTTTAGGAGCGCTA 59.727 47.619 11.50 0.00 0.00 4.26
3404 6520 0.034337 TCCGTTGTTTTAGGAGCGCT 59.966 50.000 11.27 11.27 0.00 5.92
3405 6521 0.442699 CTCCGTTGTTTTAGGAGCGC 59.557 55.000 0.00 0.00 44.09 5.92
3409 6525 3.581265 AAACCCTCCGTTGTTTTAGGA 57.419 42.857 0.00 0.00 33.93 2.94
3410 6526 6.175471 ACTATAAACCCTCCGTTGTTTTAGG 58.825 40.000 0.00 0.00 36.23 2.69
3411 6527 8.037166 ACTACTATAAACCCTCCGTTGTTTTAG 58.963 37.037 0.00 0.00 36.23 1.85
3412 6528 7.906327 ACTACTATAAACCCTCCGTTGTTTTA 58.094 34.615 0.00 0.00 36.23 1.52
3413 6529 6.772605 ACTACTATAAACCCTCCGTTGTTTT 58.227 36.000 0.00 0.00 36.23 2.43
3414 6530 6.364568 ACTACTATAAACCCTCCGTTGTTT 57.635 37.500 0.00 0.00 38.22 2.83
3415 6531 6.364568 AACTACTATAAACCCTCCGTTGTT 57.635 37.500 0.00 0.00 33.93 2.83
3416 6532 6.364568 AAACTACTATAAACCCTCCGTTGT 57.635 37.500 0.00 0.00 33.93 3.32
3417 6533 7.818930 TGTAAAACTACTATAAACCCTCCGTTG 59.181 37.037 0.00 0.00 33.93 4.10
3418 6534 7.819415 GTGTAAAACTACTATAAACCCTCCGTT 59.181 37.037 0.00 0.00 35.70 4.44
3419 6535 7.179160 AGTGTAAAACTACTATAAACCCTCCGT 59.821 37.037 0.00 0.00 37.36 4.69
3420 6536 7.490402 CAGTGTAAAACTACTATAAACCCTCCG 59.510 40.741 0.00 0.00 36.83 4.63
3421 6537 7.279536 GCAGTGTAAAACTACTATAAACCCTCC 59.720 40.741 0.00 0.00 36.83 4.30
3422 6538 8.039538 AGCAGTGTAAAACTACTATAAACCCTC 58.960 37.037 0.00 0.00 36.83 4.30
3423 6539 7.914859 AGCAGTGTAAAACTACTATAAACCCT 58.085 34.615 0.00 0.00 36.83 4.34
3424 6540 9.310716 CTAGCAGTGTAAAACTACTATAAACCC 57.689 37.037 0.00 0.00 34.79 4.11
3425 6541 9.310716 CCTAGCAGTGTAAAACTACTATAAACC 57.689 37.037 0.00 0.00 34.79 3.27
3426 6542 8.815189 GCCTAGCAGTGTAAAACTACTATAAAC 58.185 37.037 0.00 0.00 34.79 2.01
3427 6543 8.755977 AGCCTAGCAGTGTAAAACTACTATAAA 58.244 33.333 0.00 0.00 34.79 1.40
3428 6544 8.302515 AGCCTAGCAGTGTAAAACTACTATAA 57.697 34.615 0.00 0.00 34.79 0.98
3429 6545 7.893124 AGCCTAGCAGTGTAAAACTACTATA 57.107 36.000 0.00 0.00 34.79 1.31
3430 6546 6.793505 AGCCTAGCAGTGTAAAACTACTAT 57.206 37.500 0.00 0.00 34.79 2.12
3431 6547 6.600882 AAGCCTAGCAGTGTAAAACTACTA 57.399 37.500 0.00 0.00 36.83 1.82
3432 6548 5.485209 AAGCCTAGCAGTGTAAAACTACT 57.515 39.130 0.00 0.00 36.83 2.57
3433 6549 6.817140 ACATAAGCCTAGCAGTGTAAAACTAC 59.183 38.462 0.00 0.00 36.83 2.73
3434 6550 6.942976 ACATAAGCCTAGCAGTGTAAAACTA 58.057 36.000 0.00 0.00 36.83 2.24
3435 6551 5.805728 ACATAAGCCTAGCAGTGTAAAACT 58.194 37.500 0.00 0.00 40.93 2.66
3436 6552 5.220416 CGACATAAGCCTAGCAGTGTAAAAC 60.220 44.000 0.00 0.00 0.00 2.43
3437 6553 4.868171 CGACATAAGCCTAGCAGTGTAAAA 59.132 41.667 0.00 0.00 0.00 1.52
3438 6554 4.158949 TCGACATAAGCCTAGCAGTGTAAA 59.841 41.667 0.00 0.00 0.00 2.01
3439 6555 3.697542 TCGACATAAGCCTAGCAGTGTAA 59.302 43.478 0.00 0.00 0.00 2.41
3440 6556 3.284617 TCGACATAAGCCTAGCAGTGTA 58.715 45.455 0.00 0.00 0.00 2.90
3441 6557 2.100197 TCGACATAAGCCTAGCAGTGT 58.900 47.619 0.00 0.00 0.00 3.55
3442 6558 2.871182 TCGACATAAGCCTAGCAGTG 57.129 50.000 0.00 0.00 0.00 3.66
3443 6559 3.133003 ACAATCGACATAAGCCTAGCAGT 59.867 43.478 0.00 0.00 0.00 4.40
3444 6560 3.492383 CACAATCGACATAAGCCTAGCAG 59.508 47.826 0.00 0.00 0.00 4.24
3445 6561 3.118775 ACACAATCGACATAAGCCTAGCA 60.119 43.478 0.00 0.00 0.00 3.49
3446 6562 3.458189 ACACAATCGACATAAGCCTAGC 58.542 45.455 0.00 0.00 0.00 3.42
3447 6563 5.220662 CCAAACACAATCGACATAAGCCTAG 60.221 44.000 0.00 0.00 0.00 3.02
3448 6564 4.634004 CCAAACACAATCGACATAAGCCTA 59.366 41.667 0.00 0.00 0.00 3.93
3449 6565 3.440173 CCAAACACAATCGACATAAGCCT 59.560 43.478 0.00 0.00 0.00 4.58
3450 6566 3.758300 CCAAACACAATCGACATAAGCC 58.242 45.455 0.00 0.00 0.00 4.35
3451 6567 3.171277 GCCAAACACAATCGACATAAGC 58.829 45.455 0.00 0.00 0.00 3.09
3452 6568 3.190327 TGGCCAAACACAATCGACATAAG 59.810 43.478 0.61 0.00 0.00 1.73
3453 6569 3.149981 TGGCCAAACACAATCGACATAA 58.850 40.909 0.61 0.00 0.00 1.90
3454 6570 2.784347 TGGCCAAACACAATCGACATA 58.216 42.857 0.61 0.00 0.00 2.29
3455 6571 1.614996 TGGCCAAACACAATCGACAT 58.385 45.000 0.61 0.00 0.00 3.06
3456 6572 1.539388 GATGGCCAAACACAATCGACA 59.461 47.619 10.96 0.00 0.00 4.35
3457 6573 1.539388 TGATGGCCAAACACAATCGAC 59.461 47.619 10.96 0.00 0.00 4.20
3458 6574 1.539388 GTGATGGCCAAACACAATCGA 59.461 47.619 29.20 0.00 35.06 3.59
3459 6575 1.269174 TGTGATGGCCAAACACAATCG 59.731 47.619 32.35 0.00 40.72 3.34
3460 6576 2.927871 GCTGTGATGGCCAAACACAATC 60.928 50.000 33.00 26.48 42.55 2.67
3461 6577 1.001181 GCTGTGATGGCCAAACACAAT 59.999 47.619 33.00 10.95 42.55 2.71
3462 6578 0.388659 GCTGTGATGGCCAAACACAA 59.611 50.000 33.00 22.86 42.55 3.33
3463 6579 0.754587 TGCTGTGATGGCCAAACACA 60.755 50.000 32.17 32.17 41.27 3.72
3464 6580 0.604578 ATGCTGTGATGGCCAAACAC 59.395 50.000 28.18 28.18 35.45 3.32
3465 6581 0.889994 GATGCTGTGATGGCCAAACA 59.110 50.000 20.16 20.16 0.00 2.83
3466 6582 1.133790 GAGATGCTGTGATGGCCAAAC 59.866 52.381 10.96 12.70 0.00 2.93
3467 6583 1.005097 AGAGATGCTGTGATGGCCAAA 59.995 47.619 10.96 0.00 0.00 3.28
3468 6584 0.622136 AGAGATGCTGTGATGGCCAA 59.378 50.000 10.96 0.00 0.00 4.52
3469 6585 1.415289 CTAGAGATGCTGTGATGGCCA 59.585 52.381 8.56 8.56 0.00 5.36
3470 6586 1.877258 GCTAGAGATGCTGTGATGGCC 60.877 57.143 0.00 0.00 0.00 5.36
3471 6587 1.202615 TGCTAGAGATGCTGTGATGGC 60.203 52.381 0.00 0.00 0.00 4.40
3472 6588 2.364647 TCTGCTAGAGATGCTGTGATGG 59.635 50.000 0.00 0.00 0.00 3.51
3473 6589 3.729862 TCTGCTAGAGATGCTGTGATG 57.270 47.619 0.00 0.00 0.00 3.07
3474 6590 3.258872 GGATCTGCTAGAGATGCTGTGAT 59.741 47.826 12.96 0.00 44.26 3.06
3475 6591 2.627221 GGATCTGCTAGAGATGCTGTGA 59.373 50.000 12.96 0.00 44.26 3.58
3476 6592 3.029320 GGATCTGCTAGAGATGCTGTG 57.971 52.381 12.96 0.00 44.26 3.66
3481 6597 4.151121 TCCTCAAGGATCTGCTAGAGATG 58.849 47.826 8.78 0.00 41.91 2.90
3482 6598 4.467861 TCCTCAAGGATCTGCTAGAGAT 57.532 45.455 0.00 0.00 44.78 2.75
3483 6599 3.961484 TCCTCAAGGATCTGCTAGAGA 57.039 47.619 0.00 0.00 39.78 3.10
3484 6600 5.115480 GTTTTCCTCAAGGATCTGCTAGAG 58.885 45.833 0.00 0.00 44.98 2.43
3485 6601 4.382040 CGTTTTCCTCAAGGATCTGCTAGA 60.382 45.833 0.00 0.00 44.98 2.43
3486 6602 3.868077 CGTTTTCCTCAAGGATCTGCTAG 59.132 47.826 0.00 0.00 44.98 3.42
3487 6603 3.260884 ACGTTTTCCTCAAGGATCTGCTA 59.739 43.478 0.00 0.00 44.98 3.49
3488 6604 2.039084 ACGTTTTCCTCAAGGATCTGCT 59.961 45.455 0.00 0.00 44.98 4.24
3489 6605 2.427506 ACGTTTTCCTCAAGGATCTGC 58.572 47.619 0.00 0.00 44.98 4.26
3490 6606 4.320494 CCAAACGTTTTCCTCAAGGATCTG 60.320 45.833 11.66 0.00 44.98 2.90
3491 6607 3.821033 CCAAACGTTTTCCTCAAGGATCT 59.179 43.478 11.66 0.00 44.98 2.75
3492 6608 3.818773 TCCAAACGTTTTCCTCAAGGATC 59.181 43.478 11.66 0.00 44.98 3.36
3493 6609 3.821033 CTCCAAACGTTTTCCTCAAGGAT 59.179 43.478 11.66 0.00 44.98 3.24
3494 6610 3.118186 TCTCCAAACGTTTTCCTCAAGGA 60.118 43.478 11.66 11.85 43.73 3.36
3495 6611 3.003378 GTCTCCAAACGTTTTCCTCAAGG 59.997 47.826 11.66 7.87 0.00 3.61
3496 6612 3.003378 GGTCTCCAAACGTTTTCCTCAAG 59.997 47.826 11.66 3.15 0.00 3.02
3497 6613 2.946990 GGTCTCCAAACGTTTTCCTCAA 59.053 45.455 11.66 0.00 0.00 3.02
3498 6614 2.567985 GGTCTCCAAACGTTTTCCTCA 58.432 47.619 11.66 0.00 0.00 3.86
3499 6615 1.878088 GGGTCTCCAAACGTTTTCCTC 59.122 52.381 11.66 1.47 0.00 3.71
3500 6616 1.812708 CGGGTCTCCAAACGTTTTCCT 60.813 52.381 11.66 0.00 0.00 3.36
3501 6617 0.589708 CGGGTCTCCAAACGTTTTCC 59.410 55.000 11.66 8.76 0.00 3.13
3502 6618 0.589708 CCGGGTCTCCAAACGTTTTC 59.410 55.000 11.66 0.08 0.00 2.29
3503 6619 1.449726 GCCGGGTCTCCAAACGTTTT 61.450 55.000 11.66 0.00 0.00 2.43
3504 6620 1.895231 GCCGGGTCTCCAAACGTTT 60.895 57.895 7.96 7.96 0.00 3.60
3505 6621 2.281276 GCCGGGTCTCCAAACGTT 60.281 61.111 2.18 0.00 0.00 3.99
3506 6622 4.324991 GGCCGGGTCTCCAAACGT 62.325 66.667 2.18 0.00 0.00 3.99
3508 6624 3.540367 TTCGGCCGGGTCTCCAAAC 62.540 63.158 27.83 0.00 0.00 2.93
3509 6625 3.243053 TTCGGCCGGGTCTCCAAA 61.243 61.111 27.83 6.40 0.00 3.28
3510 6626 3.702048 CTTCGGCCGGGTCTCCAA 61.702 66.667 27.83 9.34 0.00 3.53
3513 6629 4.083862 AAGCTTCGGCCGGGTCTC 62.084 66.667 27.83 10.38 43.01 3.36
3514 6630 4.083862 GAAGCTTCGGCCGGGTCT 62.084 66.667 27.83 16.35 43.01 3.85
3537 6653 2.809601 CGTGTGGTAGCAGGCGAC 60.810 66.667 11.22 0.00 0.00 5.19
3552 6668 3.550656 CGCGAAAAAGAGGAGCGT 58.449 55.556 0.00 0.00 44.96 5.07
3560 6676 2.128853 TTGCAGGGCTCGCGAAAAAG 62.129 55.000 11.33 0.00 0.00 2.27
3561 6677 1.729470 TTTGCAGGGCTCGCGAAAAA 61.729 50.000 11.33 0.00 29.74 1.94
3565 6681 2.819595 GATTTGCAGGGCTCGCGA 60.820 61.111 9.26 9.26 0.00 5.87
3585 6701 3.946201 CCTATCAGCGGGGGCAGG 61.946 72.222 0.00 0.00 0.00 4.85
3592 6708 1.233019 CAAGATTGGCCTATCAGCGG 58.767 55.000 25.95 10.50 0.00 5.52
3593 6709 1.869767 GACAAGATTGGCCTATCAGCG 59.130 52.381 25.95 16.50 0.00 5.18
3594 6710 1.869767 CGACAAGATTGGCCTATCAGC 59.130 52.381 25.95 12.44 30.46 4.26
3595 6711 2.487934 CCGACAAGATTGGCCTATCAG 58.512 52.381 25.95 19.92 30.46 2.90
3596 6712 2.620251 CCGACAAGATTGGCCTATCA 57.380 50.000 25.95 0.00 30.46 2.15
3614 6730 2.104530 GTAGAGAACGGCCTCGCC 59.895 66.667 0.00 0.00 46.75 5.54
3624 6740 1.764854 GGGATGCGGGGGTAGAGAA 60.765 63.158 0.00 0.00 0.00 2.87
3661 6777 2.202518 CGAAATTGGGCTGCAGCG 60.203 61.111 31.19 11.96 43.26 5.18
3663 6779 3.281240 AGCGAAATTGGGCTGCAG 58.719 55.556 10.11 10.11 38.27 4.41
3719 6835 1.171549 TGAGATTTGGCTGCAACGCA 61.172 50.000 0.50 0.00 36.92 5.24
3720 6836 0.730494 GTGAGATTTGGCTGCAACGC 60.730 55.000 0.50 0.00 0.00 4.84
3723 6839 1.243342 CCGGTGAGATTTGGCTGCAA 61.243 55.000 0.50 0.00 0.00 4.08
3757 6873 1.878522 GAATCGCCGATCGTGCAGT 60.879 57.895 22.50 12.35 39.67 4.40
3758 6874 1.543941 GAGAATCGCCGATCGTGCAG 61.544 60.000 22.50 16.49 39.67 4.41
3759 6875 1.588932 GAGAATCGCCGATCGTGCA 60.589 57.895 22.50 13.19 39.67 4.57
3763 6879 0.455295 GCTAGGAGAATCGCCGATCG 60.455 60.000 8.51 8.51 40.15 3.69
3765 6881 0.885196 GAGCTAGGAGAATCGCCGAT 59.115 55.000 0.00 0.00 34.37 4.18
3766 6882 0.465642 TGAGCTAGGAGAATCGCCGA 60.466 55.000 0.00 0.00 34.37 5.54
3793 6909 2.354403 GCTAGGAAAACCGCTGGAACTA 60.354 50.000 1.50 0.00 0.00 2.24
3803 6919 1.002773 TCCACCGAAGCTAGGAAAACC 59.997 52.381 14.34 0.00 0.00 3.27
3816 6946 0.604073 TTATGCAACTCGTCCACCGA 59.396 50.000 0.00 0.00 45.00 4.69
3828 6958 1.535028 CTTGCCGTCACAGTTATGCAA 59.465 47.619 0.00 0.00 37.21 4.08
3839 6969 2.130821 TTGGGTATGCCTTGCCGTCA 62.131 55.000 0.00 0.00 34.45 4.35
3852 6982 1.192146 AGCTTCTCGTGCCTTGGGTA 61.192 55.000 0.00 0.00 0.00 3.69
3880 7010 2.747460 CATGTCAGGTGCACCCCG 60.747 66.667 32.29 23.22 36.42 5.73
3903 7033 0.988145 GTGATGTCCCCTCCCATCCA 60.988 60.000 0.00 0.00 37.30 3.41
3923 7053 1.878102 CGGTTGTAGCTTGCAACTCCT 60.878 52.381 23.75 0.00 43.93 3.69
3928 7058 0.893270 ATGCCGGTTGTAGCTTGCAA 60.893 50.000 1.90 0.00 31.81 4.08
3967 7097 2.192175 GTTGTAGCCGGATGGGGG 59.808 66.667 5.05 0.00 35.78 5.40
3968 7098 2.192175 GGTTGTAGCCGGATGGGG 59.808 66.667 5.05 0.00 35.78 4.96
3976 7106 1.435577 AAATGACGTCGGTTGTAGCC 58.564 50.000 11.62 0.00 0.00 3.93
3977 7107 3.531262 AAAAATGACGTCGGTTGTAGC 57.469 42.857 11.62 0.00 0.00 3.58
4030 7204 3.982576 ACCGGTTGTAGCTTTTTCTTG 57.017 42.857 0.00 0.00 0.00 3.02
4033 7207 4.213674 CGTTTACCGGTTGTAGCTTTTTC 58.786 43.478 15.04 0.00 0.00 2.29
4050 7226 4.984161 AGCGAGTTGTAGCTTTTACGTTTA 59.016 37.500 0.00 0.00 41.52 2.01
4056 7233 3.243941 TGGTCAGCGAGTTGTAGCTTTTA 60.244 43.478 0.00 0.00 42.52 1.52
4093 7270 0.034059 CGTCCACAGCTTCACCTTCT 59.966 55.000 0.00 0.00 0.00 2.85
4119 7297 2.401766 CCCCGATGCTCACAGTTGC 61.402 63.158 0.00 0.00 0.00 4.17
4120 7298 0.107508 ATCCCCGATGCTCACAGTTG 60.108 55.000 0.00 0.00 0.00 3.16
4121 7299 0.107508 CATCCCCGATGCTCACAGTT 60.108 55.000 0.00 0.00 33.17 3.16
4122 7300 1.524002 CATCCCCGATGCTCACAGT 59.476 57.895 0.00 0.00 33.17 3.55
4123 7301 4.451241 CATCCCCGATGCTCACAG 57.549 61.111 0.00 0.00 33.17 3.66
4138 7316 2.512286 CACAGGCCATCGTCGCAT 60.512 61.111 5.01 0.00 0.00 4.73
4152 7330 2.925706 TAGCTTCCACGGCCCACA 60.926 61.111 0.00 0.00 0.00 4.17
4159 7337 2.002586 CATGAGGTTGTAGCTTCCACG 58.997 52.381 0.00 0.00 0.00 4.94
4169 7347 1.376424 CTCTGGCGCATGAGGTTGT 60.376 57.895 10.83 0.00 0.00 3.32
4200 7378 2.095059 CCGCTGCATGTAGCTTTTTCTT 60.095 45.455 29.38 0.00 45.94 2.52
4233 7411 4.913335 AAAATCACCATAGCTGATGCAG 57.087 40.909 0.00 0.00 42.74 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.