AutoCloner

Multiple sequence alignment - TraesCS5A01G189300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G189300	chr5A	100.000	3572	0	0	1	3572	391979954	391976383	0.000000e+00	6597.0
1	TraesCS5A01G189300	chr5B	95.869	1961	65	6	642	2601	350497084	350499029	0.000000e+00	3158.0
2	TraesCS5A01G189300	chr5B	99.026	924	9	0	2649	3572	448448103	448449026	0.000000e+00	1657.0
3	TraesCS5A01G189300	chr5B	94.624	279	11	4	261	538	350495857	350496132	2.550000e-116	429.0
4	TraesCS5A01G189300	chr5B	94.030	268	13	3	1	266	350493305	350493571	1.540000e-108	403.0
5	TraesCS5A01G189300	chr5B	94.318	88	5	0	2259	2346	498069115	498069202	6.220000e-28	135.0
6	TraesCS5A01G189300	chr5D	95.823	1963	62	10	643	2601	305776349	305778295	0.000000e+00	3153.0
7	TraesCS5A01G189300	chr5D	92.936	637	35	7	1	633	305775272	305775902	0.000000e+00	918.0
8	TraesCS5A01G189300	chr5D	85.826	642	61	16	1	633	480989155	480988535	0.000000e+00	654.0
9	TraesCS5A01G189300	chr6B	99.244	926	6	1	2648	3572	150679624	150678699	0.000000e+00	1670.0
10	TraesCS5A01G189300	chr1B	99.349	922	5	1	2652	3572	86797428	86798349	0.000000e+00	1668.0
11	TraesCS5A01G189300	chr1B	99.025	923	8	1	2651	3572	328618805	328619727	0.000000e+00	1653.0
12	TraesCS5A01G189300	chr4A	99.133	923	5	2	2652	3572	621927953	621928874	0.000000e+00	1657.0
13	TraesCS5A01G189300	chr4A	99.024	922	8	1	2652	3572	577615551	577616472	0.000000e+00	1652.0
14	TraesCS5A01G189300	chr3A	99.132	922	6	2	2652	3572	557655313	557656233	0.000000e+00	1657.0
15	TraesCS5A01G189300	chr3A	83.287	359	44	13	64	414	46510676	46510326	2.070000e-82	316.0
16	TraesCS5A01G189300	chr3A	81.818	121	15	6	2	121	81666532	81666418	1.060000e-15	95.3
17	TraesCS5A01G189300	chr3A	81.905	105	17	2	2	106	36725137	36725239	1.770000e-13	87.9
18	TraesCS5A01G189300	chr1A	99.133	923	5	3	2652	3572	224962625	224963546	0.000000e+00	1657.0
19	TraesCS5A01G189300	chr4B	98.808	923	8	3	2651	3572	660579313	660578393	0.000000e+00	1640.0
20	TraesCS5A01G189300	chr2A	89.161	572	53	9	67	633	98580623	98581190	0.000000e+00	704.0
21	TraesCS5A01G189300	chr2A	94.545	55	3	0	2	56	203668564	203668510	6.350000e-13	86.1
22	TraesCS5A01G189300	chr1D	88.150	481	44	11	67	538	352537353	352537829	8.660000e-156	560.0
23	TraesCS5A01G189300	chr1D	78.850	487	85	16	1	478	376279648	376280125	2.680000e-81	313.0
24	TraesCS5A01G189300	chr3D	80.342	468	79	12	1	462	1833054	1832594	3.410000e-90	342.0
25	TraesCS5A01G189300	chr2D	89.179	268	19	3	2076	2343	651289495	651289752	3.440000e-85	326.0
26	TraesCS5A01G189300	chr3B	89.610	231	9	7	1956	2184	29376368	29376151	2.720000e-71	279.0
27	TraesCS5A01G189300	chr3B	88.649	185	16	4	453	633	410616017	410616200	1.670000e-53	220.0
28	TraesCS5A01G189300	chr3B	90.506	158	14	1	2221	2377	29376149	29375992	1.300000e-49	207.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G189300	chr5A	391976383	391979954	3571	True	6597.0	6597	100.0000	1	3572	1	chr5A.!!$R1	3571
1	TraesCS5A01G189300	chr5B	448448103	448449026	923	False	1657.0	1657	99.0260	2649	3572	1	chr5B.!!$F1	923
2	TraesCS5A01G189300	chr5B	350493305	350499029	5724	False	1330.0	3158	94.8410	1	2601	3	chr5B.!!$F3	2600
3	TraesCS5A01G189300	chr5D	305775272	305778295	3023	False	2035.5	3153	94.3795	1	2601	2	chr5D.!!$F1	2600
4	TraesCS5A01G189300	chr5D	480988535	480989155	620	True	654.0	654	85.8260	1	633	1	chr5D.!!$R1	632
5	TraesCS5A01G189300	chr6B	150678699	150679624	925	True	1670.0	1670	99.2440	2648	3572	1	chr6B.!!$R1	924
6	TraesCS5A01G189300	chr1B	86797428	86798349	921	False	1668.0	1668	99.3490	2652	3572	1	chr1B.!!$F1	920
7	TraesCS5A01G189300	chr1B	328618805	328619727	922	False	1653.0	1653	99.0250	2651	3572	1	chr1B.!!$F2	921
8	TraesCS5A01G189300	chr4A	621927953	621928874	921	False	1657.0	1657	99.1330	2652	3572	1	chr4A.!!$F2	920
9	TraesCS5A01G189300	chr4A	577615551	577616472	921	False	1652.0	1652	99.0240	2652	3572	1	chr4A.!!$F1	920
10	TraesCS5A01G189300	chr3A	557655313	557656233	920	False	1657.0	1657	99.1320	2652	3572	1	chr3A.!!$F2	920
11	TraesCS5A01G189300	chr1A	224962625	224963546	921	False	1657.0	1657	99.1330	2652	3572	1	chr1A.!!$F1	920
12	TraesCS5A01G189300	chr4B	660578393	660579313	920	True	1640.0	1640	98.8080	2651	3572	1	chr4B.!!$R1	921
13	TraesCS5A01G189300	chr2A	98580623	98581190	567	False	704.0	704	89.1610	67	633	1	chr2A.!!$F1	566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
639	2950	0.368907	CGCTTTGTATTGTCGGACGG	59.631	55.0	3.34	0.0	0.00	4.79	F
1443	4694	0.251634	TATTGCAGATGGCCGTGACA	59.748	50.0	0.00	0.0	43.89	3.58	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2532	5783	0.105964	TCTCCTCCTCCCCTTCATCG	60.106	60.000	0.0	0.0	0.0	3.84	R
2602	5856	2.241176	AGGGAATCAATAAACGGAGGCA	59.759	45.455	0.0	0.0	0.0	4.75	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
91	92	4.792068	ACCTCCATTTCACTTTTCACTGA	58.208	39.130	0.00	0.00	0.00	3.41
100	101	5.560966	TCACTTTTCACTGAGTTGTTTCC	57.439	39.130	0.00	0.00	0.00	3.13
202	205	1.101049	ACCAGGTTCACAAGTTGCCG	61.101	55.000	1.81	0.00	0.00	5.69
411	2719	7.387265	TTGGCCTCAGGAGTTCAAATATATA	57.613	36.000	3.32	0.00	0.00	0.86
538	2849	3.219281	TGCATGCACCGTACTATCTCTA	58.781	45.455	18.46	0.00	0.00	2.43
565	2876	7.878127	CACTCTCTTCCACCTTTATGTAAAAGA	59.122	37.037	0.00	0.00	0.00	2.52
580	2891	5.045215	TGTAAAAGACTGACACAAGTACGG	58.955	41.667	0.00	0.00	0.00	4.02
633	2944	1.396996	ACGCCATCGCTTTGTATTGTC	59.603	47.619	0.00	0.00	39.84	3.18
635	2946	1.268032	GCCATCGCTTTGTATTGTCGG	60.268	52.381	0.00	0.00	0.00	4.79
636	2947	2.276201	CCATCGCTTTGTATTGTCGGA	58.724	47.619	0.00	0.00	0.00	4.55
637	2948	2.030457	CCATCGCTTTGTATTGTCGGAC	59.970	50.000	0.00	0.00	0.00	4.79
638	2949	1.342555	TCGCTTTGTATTGTCGGACG	58.657	50.000	3.34	0.00	0.00	4.79
639	2950	0.368907	CGCTTTGTATTGTCGGACGG	59.631	55.000	3.34	0.00	0.00	4.79
640	2951	1.717194	GCTTTGTATTGTCGGACGGA	58.283	50.000	3.34	0.00	0.00	4.69
641	2952	1.392510	GCTTTGTATTGTCGGACGGAC	59.607	52.381	6.22	6.22	46.27	4.79
697	3947	9.778993	GAGTGTGTATACTGTATAGTCGAAAAA	57.221	33.333	7.75	0.00	38.36	1.94
762	4012	3.438087	CAGATTCCAATCTCAAGTTGCGT	59.562	43.478	0.00	0.00	43.65	5.24
767	4017	5.545658	TCCAATCTCAAGTTGCGTTATTC	57.454	39.130	0.00	0.00	0.00	1.75
780	4030	6.812160	AGTTGCGTTATTCTTTAGGAGTACTG	59.188	38.462	0.00	0.00	0.00	2.74
782	4032	6.327934	TGCGTTATTCTTTAGGAGTACTGTC	58.672	40.000	0.00	0.00	0.00	3.51
783	4033	5.747675	GCGTTATTCTTTAGGAGTACTGTCC	59.252	44.000	0.00	0.00	36.79	4.02
809	4059	9.003658	CATTTGGTGGAGTATAAAATAGCTAGG	57.996	37.037	0.00	0.00	0.00	3.02
810	4060	6.110411	TGGTGGAGTATAAAATAGCTAGGC	57.890	41.667	0.00	0.00	0.00	3.93
812	4062	6.166982	GGTGGAGTATAAAATAGCTAGGCTG	58.833	44.000	0.00	0.00	40.10	4.85
813	4063	6.014499	GGTGGAGTATAAAATAGCTAGGCTGA	60.014	42.308	0.00	0.00	40.10	4.26
814	4064	6.869388	GTGGAGTATAAAATAGCTAGGCTGAC	59.131	42.308	0.00	0.00	40.10	3.51
815	4065	6.782988	TGGAGTATAAAATAGCTAGGCTGACT	59.217	38.462	0.00	0.00	40.10	3.41
816	4066	7.039644	TGGAGTATAAAATAGCTAGGCTGACTC	60.040	40.741	0.00	7.60	40.10	3.36
817	4067	6.915349	AGTATAAAATAGCTAGGCTGACTCG	58.085	40.000	0.00	0.00	40.10	4.18
818	4068	6.715718	AGTATAAAATAGCTAGGCTGACTCGA	59.284	38.462	0.00	0.00	40.10	4.04
819	4069	4.737855	AAAATAGCTAGGCTGACTCGAA	57.262	40.909	0.00	0.00	40.10	3.71
820	4070	4.737855	AAATAGCTAGGCTGACTCGAAA	57.262	40.909	0.00	0.00	40.10	3.46
821	4071	4.314740	AATAGCTAGGCTGACTCGAAAG	57.685	45.455	0.00	0.00	40.10	2.62
822	4072	1.840737	AGCTAGGCTGACTCGAAAGA	58.159	50.000	0.00	0.00	37.57	2.52
823	4073	2.383855	AGCTAGGCTGACTCGAAAGAT	58.616	47.619	0.00	0.00	37.57	2.40
824	4074	2.360801	AGCTAGGCTGACTCGAAAGATC	59.639	50.000	0.00	0.00	37.57	2.75
850	4100	2.130395	GCAAAACCTTTGCTGCTCTTC	58.870	47.619	15.16	0.00	41.87	2.87
1305	4555	1.126488	CCTTGCTCATAGGCCTCTCA	58.874	55.000	9.68	0.00	0.00	3.27
1329	4579	3.259425	CTTTGCGCAGGCTGGTGAC	62.259	63.158	17.64	0.00	40.82	3.67
1410	4661	2.563179	AGAGCTCTGGTCGCTTAGAAAA	59.437	45.455	17.42	0.00	37.96	2.29
1412	4663	3.526534	AGCTCTGGTCGCTTAGAAAATC	58.473	45.455	0.00	0.00	32.98	2.17
1443	4694	0.251634	TATTGCAGATGGCCGTGACA	59.748	50.000	0.00	0.00	43.89	3.58
1623	4874	2.626780	GCCCACCTCGTTCTTTGGC	61.627	63.158	0.00	0.00	0.00	4.52
2567	5818	3.715097	GAGGGAGCTGCTGCCACT	61.715	66.667	36.47	20.93	44.71	4.00
2572	5823	1.376942	GAGCTGCTGCCACTGTGAT	60.377	57.895	7.01	0.00	40.80	3.06
2588	5839	3.311106	TGTGATCGTCGTTTGACTTACC	58.689	45.455	0.00	0.00	43.21	2.85
2601	5855	7.222611	TCGTTTGACTTACCAGTAGTGTTTTAC	59.777	37.037	0.00	0.00	31.22	2.01
2602	5856	7.223387	CGTTTGACTTACCAGTAGTGTTTTACT	59.777	37.037	0.00	0.00	43.56	2.24
2603	5857	8.333186	GTTTGACTTACCAGTAGTGTTTTACTG	58.667	37.037	6.27	6.27	46.46	2.74
2604	5858	5.987347	TGACTTACCAGTAGTGTTTTACTGC	59.013	40.000	7.49	0.00	45.86	4.40
2605	5859	5.303165	ACTTACCAGTAGTGTTTTACTGCC	58.697	41.667	7.49	0.00	45.86	4.85
2606	5860	5.071384	ACTTACCAGTAGTGTTTTACTGCCT	59.929	40.000	7.49	0.00	45.86	4.75
2607	5861	4.004196	ACCAGTAGTGTTTTACTGCCTC	57.996	45.455	7.49	0.00	45.86	4.70
2608	5862	3.244457	ACCAGTAGTGTTTTACTGCCTCC	60.244	47.826	7.49	0.00	45.86	4.30
2609	5863	2.993899	CAGTAGTGTTTTACTGCCTCCG	59.006	50.000	0.77	0.00	42.73	4.63
2610	5864	2.631545	AGTAGTGTTTTACTGCCTCCGT	59.368	45.455	0.00	0.00	42.32	4.69
2611	5865	2.632987	AGTGTTTTACTGCCTCCGTT	57.367	45.000	0.00	0.00	38.49	4.44
2612	5866	2.927028	AGTGTTTTACTGCCTCCGTTT	58.073	42.857	0.00	0.00	38.49	3.60
2613	5867	4.075963	AGTGTTTTACTGCCTCCGTTTA	57.924	40.909	0.00	0.00	38.49	2.01
2614	5868	4.648651	AGTGTTTTACTGCCTCCGTTTAT	58.351	39.130	0.00	0.00	38.49	1.40
2615	5869	5.067954	AGTGTTTTACTGCCTCCGTTTATT	58.932	37.500	0.00	0.00	38.49	1.40
2616	5870	5.048991	AGTGTTTTACTGCCTCCGTTTATTG	60.049	40.000	0.00	0.00	38.49	1.90
2617	5871	5.049267	GTGTTTTACTGCCTCCGTTTATTGA	60.049	40.000	0.00	0.00	0.00	2.57
2618	5872	5.708230	TGTTTTACTGCCTCCGTTTATTGAT	59.292	36.000	0.00	0.00	0.00	2.57
2619	5873	6.207810	TGTTTTACTGCCTCCGTTTATTGATT	59.792	34.615	0.00	0.00	0.00	2.57
2620	5874	6.431198	TTTACTGCCTCCGTTTATTGATTC	57.569	37.500	0.00	0.00	0.00	2.52
2621	5875	3.279434	ACTGCCTCCGTTTATTGATTCC	58.721	45.455	0.00	0.00	0.00	3.01
2622	5876	2.618709	CTGCCTCCGTTTATTGATTCCC	59.381	50.000	0.00	0.00	0.00	3.97
2623	5877	2.241176	TGCCTCCGTTTATTGATTCCCT	59.759	45.455	0.00	0.00	0.00	4.20
2624	5878	3.288092	GCCTCCGTTTATTGATTCCCTT	58.712	45.455	0.00	0.00	0.00	3.95
2625	5879	4.080243	TGCCTCCGTTTATTGATTCCCTTA	60.080	41.667	0.00	0.00	0.00	2.69
2626	5880	4.515567	GCCTCCGTTTATTGATTCCCTTAG	59.484	45.833	0.00	0.00	0.00	2.18
2627	5881	5.681639	CCTCCGTTTATTGATTCCCTTAGT	58.318	41.667	0.00	0.00	0.00	2.24
2628	5882	6.687139	GCCTCCGTTTATTGATTCCCTTAGTA	60.687	42.308	0.00	0.00	0.00	1.82
2629	5883	7.450903	CCTCCGTTTATTGATTCCCTTAGTAT	58.549	38.462	0.00	0.00	0.00	2.12
2630	5884	7.937394	CCTCCGTTTATTGATTCCCTTAGTATT	59.063	37.037	0.00	0.00	0.00	1.89
2631	5885	9.338622	CTCCGTTTATTGATTCCCTTAGTATTT	57.661	33.333	0.00	0.00	0.00	1.40
2632	5886	9.689501	TCCGTTTATTGATTCCCTTAGTATTTT	57.310	29.630	0.00	0.00	0.00	1.82
2660	5914	9.772973	TGTCAAATCTTTTAACTACTAGCAGAA	57.227	29.630	0.00	0.00	0.00	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
59	60	5.066593	AGTGAAATGGAGGTTCTCAAAGTC	58.933	41.667	0.00	0.00	31.08	3.01
365	2671	9.752961	GCCAAAACCTTTAAAACAAGACTAATA	57.247	29.630	0.00	0.00	0.00	0.98
538	2849	6.681729	TTACATAAAGGTGGAAGAGAGTGT	57.318	37.500	0.00	0.00	0.00	3.55
565	2876	1.343142	TGCATCCGTACTTGTGTCAGT	59.657	47.619	0.00	0.00	0.00	3.41
580	2891	3.120060	CCTGTAGCAGTTGTTCTTGCATC	60.120	47.826	0.00	0.00	0.00	3.91
633	2944	2.023741	CATACGTCCGTCCGTCCG	59.976	66.667	0.00	0.00	42.00	4.79
635	2946	1.870901	GTGCATACGTCCGTCCGTC	60.871	63.158	0.00	0.00	42.00	4.79
636	2947	2.180017	GTGCATACGTCCGTCCGT	59.820	61.111	0.00	2.17	44.50	4.69
637	2948	2.581409	GGTGCATACGTCCGTCCG	60.581	66.667	0.00	0.00	0.00	4.79
638	2949	0.461339	ATTGGTGCATACGTCCGTCC	60.461	55.000	0.00	0.00	0.00	4.79
639	2950	0.650512	CATTGGTGCATACGTCCGTC	59.349	55.000	0.00	0.00	0.00	4.79
640	2951	2.762360	CATTGGTGCATACGTCCGT	58.238	52.632	0.00	0.00	0.00	4.69
697	3947	4.992951	GCAAGAAGGCAATGAACTTTGATT	59.007	37.500	4.94	0.00	0.00	2.57
762	4012	9.667107	CAAATGGACAGTACTCCTAAAGAATAA	57.333	33.333	0.00	0.00	0.00	1.40
767	4017	5.643777	CACCAAATGGACAGTACTCCTAAAG	59.356	44.000	6.42	0.00	38.94	1.85
783	4033	9.003658	CCTAGCTATTTTATACTCCACCAAATG	57.996	37.037	0.00	0.00	0.00	2.32
809	4059	1.997669	AACGGATCTTTCGAGTCAGC	58.002	50.000	0.00	0.00	0.00	4.26
810	4060	2.092838	GCAAACGGATCTTTCGAGTCAG	59.907	50.000	0.00	0.00	0.00	3.51
812	4062	2.066262	TGCAAACGGATCTTTCGAGTC	58.934	47.619	0.00	0.00	0.00	3.36
813	4063	2.163818	TGCAAACGGATCTTTCGAGT	57.836	45.000	0.00	0.00	0.00	4.18
814	4064	3.536158	TTTGCAAACGGATCTTTCGAG	57.464	42.857	8.05	0.00	0.00	4.04
815	4065	3.549221	GGTTTTGCAAACGGATCTTTCGA	60.549	43.478	12.39	0.00	0.00	3.71
816	4066	2.724174	GGTTTTGCAAACGGATCTTTCG	59.276	45.455	12.39	0.00	0.00	3.46
817	4067	3.977427	AGGTTTTGCAAACGGATCTTTC	58.023	40.909	12.39	0.00	0.00	2.62
818	4068	4.400529	AAGGTTTTGCAAACGGATCTTT	57.599	36.364	12.39	0.91	0.00	2.52
819	4069	4.119136	CAAAGGTTTTGCAAACGGATCTT	58.881	39.130	12.39	6.71	0.00	2.40
820	4070	3.716601	CAAAGGTTTTGCAAACGGATCT	58.283	40.909	12.39	0.00	0.00	2.75
821	4071	2.220824	GCAAAGGTTTTGCAAACGGATC	59.779	45.455	12.39	0.00	44.34	3.36
822	4072	2.209273	GCAAAGGTTTTGCAAACGGAT	58.791	42.857	12.39	0.00	44.34	4.18
823	4073	1.646189	GCAAAGGTTTTGCAAACGGA	58.354	45.000	12.39	0.00	44.34	4.69
929	4179	1.805495	GCCTCGACCCGGATTAAGAAC	60.805	57.143	0.73	0.00	0.00	3.01
1110	4360	1.442148	GATCTCCCTGTACACGGCC	59.558	63.158	6.05	0.00	0.00	6.13
1113	4363	1.065928	GCCGATCTCCCTGTACACG	59.934	63.158	0.00	0.00	0.00	4.49
1305	4555	3.605664	GCCTGCGCAAAGGTGGTT	61.606	61.111	13.05	0.00	39.75	3.67
1401	4652	5.083136	TCGCATCATTCGATTTTCTAAGC	57.917	39.130	0.00	0.00	0.00	3.09
1403	4654	7.746034	GCAATATCGCATCATTCGATTTTCTAA	59.254	33.333	0.00	0.00	43.27	2.10
1410	4661	4.248058	TCTGCAATATCGCATCATTCGAT	58.752	39.130	0.00	0.00	46.79	3.59
1412	4663	4.331962	CATCTGCAATATCGCATCATTCG	58.668	43.478	0.00	0.00	42.06	3.34
1673	4924	2.668632	GGATGGACAAGCCGACCA	59.331	61.111	0.00	0.00	43.79	4.02
2418	5669	4.388165	CAGTACAGAAACGAGTAGACGAGA	59.612	45.833	0.00	0.00	37.03	4.04
2532	5783	0.105964	TCTCCTCCTCCCCTTCATCG	60.106	60.000	0.00	0.00	0.00	3.84
2567	5818	3.243468	TGGTAAGTCAAACGACGATCACA	60.243	43.478	0.00	0.00	38.51	3.58
2572	5823	3.565482	ACTACTGGTAAGTCAAACGACGA	59.435	43.478	0.00	0.00	38.51	4.20
2601	5855	2.618709	GGGAATCAATAAACGGAGGCAG	59.381	50.000	0.00	0.00	0.00	4.85
2602	5856	2.241176	AGGGAATCAATAAACGGAGGCA	59.759	45.455	0.00	0.00	0.00	4.75
2603	5857	2.932261	AGGGAATCAATAAACGGAGGC	58.068	47.619	0.00	0.00	0.00	4.70
2604	5858	5.681639	ACTAAGGGAATCAATAAACGGAGG	58.318	41.667	0.00	0.00	0.00	4.30
2605	5859	8.904099	AATACTAAGGGAATCAATAAACGGAG	57.096	34.615	0.00	0.00	0.00	4.63
2606	5860	9.689501	AAAATACTAAGGGAATCAATAAACGGA	57.310	29.630	0.00	0.00	0.00	4.69
2633	5887	9.944376	TCTGCTAGTAGTTAAAAGATTTGACAT	57.056	29.630	7.77	0.00	0.00	3.06
2634	5888	9.772973	TTCTGCTAGTAGTTAAAAGATTTGACA	57.227	29.630	7.77	0.00	0.00	3.58
2637	5891	9.495754	GCATTCTGCTAGTAGTTAAAAGATTTG	57.504	33.333	7.77	0.00	40.96	2.32
2638	5892	8.678199	GGCATTCTGCTAGTAGTTAAAAGATTT	58.322	33.333	7.77	0.00	44.28	2.17
2639	5893	7.283354	GGGCATTCTGCTAGTAGTTAAAAGATT	59.717	37.037	7.77	0.00	44.28	2.40
2640	5894	6.768381	GGGCATTCTGCTAGTAGTTAAAAGAT	59.232	38.462	7.77	0.00	44.28	2.40
2641	5895	6.113411	GGGCATTCTGCTAGTAGTTAAAAGA	58.887	40.000	7.77	0.00	44.28	2.52
2642	5896	5.880332	TGGGCATTCTGCTAGTAGTTAAAAG	59.120	40.000	7.77	0.00	44.28	2.27
2643	5897	5.811190	TGGGCATTCTGCTAGTAGTTAAAA	58.189	37.500	7.77	0.00	44.28	1.52
2644	5898	5.429681	TGGGCATTCTGCTAGTAGTTAAA	57.570	39.130	7.77	0.00	44.28	1.52
2645	5899	5.368145	CATGGGCATTCTGCTAGTAGTTAA	58.632	41.667	7.77	0.00	44.28	2.01
2646	5900	4.743651	GCATGGGCATTCTGCTAGTAGTTA	60.744	45.833	7.77	0.00	44.28	2.24
2660	5914	2.472059	CGTAGCAACGCATGGGCAT	61.472	57.895	10.10	0.00	43.12	4.40
2951	6206	2.630580	GGATACCGAGCAAGAAGAGGAT	59.369	50.000	0.00	0.00	0.00	3.24

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.