Multiple sequence alignment - TraesCS5A01G188200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G188200 chr5A 100.000 4379 0 0 1 4379 389727704 389723326 0.000000e+00 8087
1 TraesCS5A01G188200 chr5A 93.916 263 13 2 600 862 463798293 463798552 1.140000e-105 394
2 TraesCS5A01G188200 chr5A 85.932 263 33 4 1369 1629 389764390 389764130 1.200000e-70 278
3 TraesCS5A01G188200 chr5A 98.198 111 2 0 4269 4379 303853617 303853727 1.240000e-45 195
4 TraesCS5A01G188200 chr5D 95.433 1861 47 17 2430 4271 308219917 308221758 0.000000e+00 2931
5 TraesCS5A01G188200 chr5D 89.829 1111 42 25 857 1922 308217507 308218591 0.000000e+00 1360
6 TraesCS5A01G188200 chr5D 89.432 634 49 12 1 620 308216882 308217511 0.000000e+00 784
7 TraesCS5A01G188200 chr5D 81.051 533 24 25 1908 2420 308218612 308219087 1.940000e-93 353
8 TraesCS5A01G188200 chr5D 94.915 118 6 0 4262 4379 547239882 547239765 7.480000e-43 185
9 TraesCS5A01G188200 chr5B 90.812 1774 91 29 2485 4223 353015528 353017264 0.000000e+00 2307
10 TraesCS5A01G188200 chr5B 92.846 1230 57 14 857 2067 353013600 353014817 0.000000e+00 1755
11 TraesCS5A01G188200 chr5B 97.959 245 3 1 614 858 294764305 294764063 1.460000e-114 424
12 TraesCS5A01G188200 chr5B 97.951 244 3 1 615 858 617272111 617272352 5.240000e-114 422
13 TraesCS5A01G188200 chr5B 93.007 286 13 3 2136 2421 353015050 353015328 1.130000e-110 411
14 TraesCS5A01G188200 chr5B 82.824 425 56 12 82 493 523195342 523194922 8.950000e-97 364
15 TraesCS5A01G188200 chr5B 85.866 283 36 4 1369 1649 352577754 352578034 9.210000e-77 298
16 TraesCS5A01G188200 chr5B 92.969 128 6 2 495 620 353013478 353013604 2.690000e-42 183
17 TraesCS5A01G188200 chr5B 87.037 108 9 3 2058 2160 353014939 353015046 2.770000e-22 117
18 TraesCS5A01G188200 chr3A 86.081 546 65 8 1112 1656 8999629 8999094 1.060000e-160 577
19 TraesCS5A01G188200 chr3A 99.065 107 1 0 4273 4379 214611748 214611854 4.470000e-45 193
20 TraesCS5A01G188200 chr3A 76.496 234 45 10 2740 2968 478666305 478666533 7.690000e-23 119
21 TraesCS5A01G188200 chr7D 85.794 535 63 6 2692 3217 45106379 45105849 4.950000e-154 555
22 TraesCS5A01G188200 chr7D 82.505 503 66 13 2736 3217 45058169 45057668 5.240000e-114 422
23 TraesCS5A01G188200 chr7D 82.910 433 53 15 83 501 579096703 579096278 1.920000e-98 370
24 TraesCS5A01G188200 chr7D 81.311 412 62 4 2821 3217 45028168 45028579 1.960000e-83 320
25 TraesCS5A01G188200 chr7D 83.406 229 25 4 3000 3217 45222344 45222118 2.670000e-47 200
26 TraesCS5A01G188200 chr1A 96.198 263 4 4 606 867 580992746 580993003 4.050000e-115 425
27 TraesCS5A01G188200 chr1A 97.951 244 3 1 615 858 27330070 27330311 5.240000e-114 422
28 TraesCS5A01G188200 chr1A 94.915 118 6 0 4262 4379 493207977 493208094 7.480000e-43 185
29 TraesCS5A01G188200 chr3B 97.959 245 3 1 615 859 437369717 437369959 1.460000e-114 424
30 TraesCS5A01G188200 chr1D 85.151 431 43 10 82 495 296736582 296736156 5.240000e-114 422
31 TraesCS5A01G188200 chr1D 97.297 111 3 0 4269 4379 285371008 285371118 5.780000e-44 189
32 TraesCS5A01G188200 chr6A 96.047 253 8 1 614 866 91648689 91648939 1.130000e-110 411
33 TraesCS5A01G188200 chr6A 94.958 119 6 0 4261 4379 420829331 420829449 2.080000e-43 187
34 TraesCS5A01G188200 chr6B 84.762 420 49 14 61 472 517441307 517441719 1.470000e-109 407
35 TraesCS5A01G188200 chr4A 96.721 244 6 1 616 859 37605555 37605314 5.270000e-109 405
36 TraesCS5A01G188200 chr4A 96.721 244 6 1 616 859 560038946 560038705 5.270000e-109 405
37 TraesCS5A01G188200 chr4A 77.989 527 77 10 2704 3217 656772139 656771639 1.190000e-75 294
38 TraesCS5A01G188200 chr4A 95.041 121 6 0 4259 4379 157318620 157318740 1.610000e-44 191
39 TraesCS5A01G188200 chr4A 94.915 118 6 0 4262 4379 235649054 235649171 7.480000e-43 185
40 TraesCS5A01G188200 chr7B 84.346 428 45 12 82 495 60458098 60457679 2.450000e-107 399
41 TraesCS5A01G188200 chr4B 83.688 423 48 12 91 496 122566540 122566122 3.200000e-101 379
42 TraesCS5A01G188200 chr6D 83.099 426 50 8 77 495 451758741 451759151 6.920000e-98 368
43 TraesCS5A01G188200 chr2B 83.590 390 49 8 122 500 207739694 207740079 6.970000e-93 351
44 TraesCS5A01G188200 chrUn 77.609 527 79 12 2704 3217 245140222 245139722 2.580000e-72 283
45 TraesCS5A01G188200 chrUn 77.462 528 80 11 2703 3217 371970695 371971196 3.330000e-71 279
46 TraesCS5A01G188200 chr3D 94.215 121 6 1 4260 4379 550509422 550509542 2.690000e-42 183
47 TraesCS5A01G188200 chr3D 76.613 248 44 14 2740 2980 359092954 359093194 1.650000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G188200 chr5A 389723326 389727704 4378 True 8087.0 8087 100.00000 1 4379 1 chr5A.!!$R1 4378
1 TraesCS5A01G188200 chr5D 308216882 308221758 4876 False 1357.0 2931 88.93625 1 4271 4 chr5D.!!$F1 4270
2 TraesCS5A01G188200 chr5B 353013478 353017264 3786 False 954.6 2307 91.33420 495 4223 5 chr5B.!!$F3 3728
3 TraesCS5A01G188200 chr3A 8999094 8999629 535 True 577.0 577 86.08100 1112 1656 1 chr3A.!!$R1 544
4 TraesCS5A01G188200 chr7D 45105849 45106379 530 True 555.0 555 85.79400 2692 3217 1 chr7D.!!$R2 525
5 TraesCS5A01G188200 chr7D 45057668 45058169 501 True 422.0 422 82.50500 2736 3217 1 chr7D.!!$R1 481
6 TraesCS5A01G188200 chr4A 656771639 656772139 500 True 294.0 294 77.98900 2704 3217 1 chr4A.!!$R3 513
7 TraesCS5A01G188200 chrUn 245139722 245140222 500 True 283.0 283 77.60900 2704 3217 1 chrUn.!!$R1 513
8 TraesCS5A01G188200 chrUn 371970695 371971196 501 False 279.0 279 77.46200 2703 3217 1 chrUn.!!$F1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
834 848 0.461339 TCGAGAAACGCATTAGGCCC 60.461 55.0 0.0 0.0 42.26 5.80 F
835 849 0.462047 CGAGAAACGCATTAGGCCCT 60.462 55.0 0.0 0.0 40.31 5.19 F
2571 3690 0.035056 AAAGCCATGTCGGGAAGAGG 60.035 55.0 0.0 0.0 34.06 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 2141 0.178068 TGCTCCATCTTCGTTAGGGC 59.822 55.000 0.00 0.00 0.00 5.19 R
2667 3790 0.311790 AACAGAAGTTGCATGCACGG 59.688 50.000 22.58 12.19 36.39 4.94 R
3520 4685 2.084546 AGAAATAAAGGCACTGACCGC 58.915 47.619 0.00 0.00 40.86 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 82 9.566432 CTGAAAGCTTATTAGAGGGATACATTT 57.434 33.333 0.00 0.00 39.74 2.32
83 85 9.566432 AAAGCTTATTAGAGGGATACATTTGAG 57.434 33.333 0.00 0.00 39.74 3.02
86 88 9.213799 GCTTATTAGAGGGATACATTTGAGAAG 57.786 37.037 0.00 0.00 39.74 2.85
89 91 3.137360 AGAGGGATACATTTGAGAAGGGC 59.863 47.826 0.00 0.00 39.74 5.19
98 100 4.533311 ACATTTGAGAAGGGCATTTTGGAT 59.467 37.500 0.00 0.00 0.00 3.41
101 103 3.624777 TGAGAAGGGCATTTTGGATCTC 58.375 45.455 0.00 0.00 34.01 2.75
102 104 3.010472 TGAGAAGGGCATTTTGGATCTCA 59.990 43.478 0.00 0.00 39.42 3.27
124 126 2.440247 CCATGGAGGCCGGGTTTC 60.440 66.667 5.56 0.00 0.00 2.78
195 200 8.397906 CAATTGTACAAGTACATAAGGATGTGG 58.602 37.037 14.65 0.00 46.11 4.17
205 210 7.783119 AGTACATAAGGATGTGGTGTGTATCTA 59.217 37.037 0.00 0.00 46.11 1.98
244 249 8.447924 AATGAAATACCTTGAGATGTGATCTG 57.552 34.615 0.00 0.00 40.38 2.90
248 253 3.935315 ACCTTGAGATGTGATCTGTGTG 58.065 45.455 0.00 0.00 40.38 3.82
249 254 3.268330 CCTTGAGATGTGATCTGTGTGG 58.732 50.000 0.00 0.00 40.38 4.17
311 317 6.699575 AGTGTTGAAAAGTCATAGCTTTGT 57.300 33.333 4.00 0.00 38.54 2.83
317 323 8.534778 GTTGAAAAGTCATAGCTTTGTCTTTTG 58.465 33.333 30.66 5.49 41.62 2.44
319 325 8.250332 TGAAAAGTCATAGCTTTGTCTTTTGTT 58.750 29.630 30.66 17.24 41.62 2.83
320 326 7.992180 AAAGTCATAGCTTTGTCTTTTGTTG 57.008 32.000 18.43 0.00 37.31 3.33
321 327 5.523369 AGTCATAGCTTTGTCTTTTGTTGC 58.477 37.500 4.00 0.00 0.00 4.17
322 328 5.067674 AGTCATAGCTTTGTCTTTTGTTGCA 59.932 36.000 4.00 0.00 0.00 4.08
323 329 5.173854 GTCATAGCTTTGTCTTTTGTTGCAC 59.826 40.000 4.00 0.00 0.00 4.57
325 331 3.514645 AGCTTTGTCTTTTGTTGCACAG 58.485 40.909 0.00 0.00 0.00 3.66
339 345 1.539388 TGCACAGCCCTTATTTCAACG 59.461 47.619 0.00 0.00 0.00 4.10
344 350 5.621329 GCACAGCCCTTATTTCAACGTATTT 60.621 40.000 0.00 0.00 0.00 1.40
369 375 7.941830 TTCGTCCTGAAAATTTACACACATGTG 60.942 37.037 24.25 24.25 41.84 3.21
383 389 3.423539 ACATGTGTGTGTTATGCCTCT 57.576 42.857 0.00 0.00 37.14 3.69
384 390 4.551702 ACATGTGTGTGTTATGCCTCTA 57.448 40.909 0.00 0.00 37.14 2.43
385 391 5.102953 ACATGTGTGTGTTATGCCTCTAT 57.897 39.130 0.00 0.00 37.14 1.98
386 392 4.877823 ACATGTGTGTGTTATGCCTCTATG 59.122 41.667 0.00 0.00 37.14 2.23
389 395 6.233905 TGTGTGTGTTATGCCTCTATGTAT 57.766 37.500 0.00 0.00 0.00 2.29
395 401 6.098266 TGTGTTATGCCTCTATGTATGTCTGT 59.902 38.462 0.00 0.00 0.00 3.41
398 404 8.870116 TGTTATGCCTCTATGTATGTCTGTATT 58.130 33.333 0.00 0.00 0.00 1.89
472 479 1.253100 TTCAAAAACCGGCCTCCATC 58.747 50.000 0.00 0.00 0.00 3.51
473 480 0.610785 TCAAAAACCGGCCTCCATCC 60.611 55.000 0.00 0.00 0.00 3.51
474 481 0.611896 CAAAAACCGGCCTCCATCCT 60.612 55.000 0.00 0.00 0.00 3.24
480 492 1.532794 CGGCCTCCATCCTAGCTCT 60.533 63.158 0.00 0.00 0.00 4.09
532 544 6.944557 TGTAACGACTTGATATGACTTGTG 57.055 37.500 0.00 0.00 0.00 3.33
548 560 5.112129 ACTTGTGGGTCAGTAAAAACTCT 57.888 39.130 0.00 0.00 0.00 3.24
620 634 1.490910 CCCCCAGAAACCTCATACTCC 59.509 57.143 0.00 0.00 0.00 3.85
621 635 1.490910 CCCCAGAAACCTCATACTCCC 59.509 57.143 0.00 0.00 0.00 4.30
622 636 2.482494 CCCAGAAACCTCATACTCCCT 58.518 52.381 0.00 0.00 0.00 4.20
623 637 2.436173 CCCAGAAACCTCATACTCCCTC 59.564 54.545 0.00 0.00 0.00 4.30
624 638 2.436173 CCAGAAACCTCATACTCCCTCC 59.564 54.545 0.00 0.00 0.00 4.30
625 639 3.379452 CAGAAACCTCATACTCCCTCCT 58.621 50.000 0.00 0.00 0.00 3.69
626 640 3.777522 CAGAAACCTCATACTCCCTCCTT 59.222 47.826 0.00 0.00 0.00 3.36
627 641 4.034410 AGAAACCTCATACTCCCTCCTTC 58.966 47.826 0.00 0.00 0.00 3.46
628 642 2.480642 ACCTCATACTCCCTCCTTCC 57.519 55.000 0.00 0.00 0.00 3.46
629 643 1.651770 ACCTCATACTCCCTCCTTCCA 59.348 52.381 0.00 0.00 0.00 3.53
630 644 2.251338 ACCTCATACTCCCTCCTTCCAT 59.749 50.000 0.00 0.00 0.00 3.41
631 645 2.903135 CCTCATACTCCCTCCTTCCATC 59.097 54.545 0.00 0.00 0.00 3.51
632 646 3.439260 CCTCATACTCCCTCCTTCCATCT 60.439 52.174 0.00 0.00 0.00 2.90
633 647 4.202727 CCTCATACTCCCTCCTTCCATCTA 60.203 50.000 0.00 0.00 0.00 1.98
634 648 5.519982 CCTCATACTCCCTCCTTCCATCTAT 60.520 48.000 0.00 0.00 0.00 1.98
635 649 6.297889 CCTCATACTCCCTCCTTCCATCTATA 60.298 46.154 0.00 0.00 0.00 1.31
636 650 7.304054 TCATACTCCCTCCTTCCATCTATAT 57.696 40.000 0.00 0.00 0.00 0.86
637 651 8.420806 TCATACTCCCTCCTTCCATCTATATA 57.579 38.462 0.00 0.00 0.00 0.86
638 652 8.506921 TCATACTCCCTCCTTCCATCTATATAG 58.493 40.741 3.10 3.10 0.00 1.31
639 653 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
640 654 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
641 655 3.970640 CCCTCCTTCCATCTATATAGGGC 59.029 52.174 9.89 0.00 36.30 5.19
642 656 3.970640 CCTCCTTCCATCTATATAGGGCC 59.029 52.174 9.89 0.00 0.00 5.80
643 657 4.327332 CCTCCTTCCATCTATATAGGGCCT 60.327 50.000 12.58 12.58 0.00 5.19
644 658 5.103043 CCTCCTTCCATCTATATAGGGCCTA 60.103 48.000 17.16 17.16 0.00 3.93
645 659 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
646 660 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
647 661 6.846505 TCCTTCCATCTATATAGGGCCTAATG 59.153 42.308 18.91 15.42 0.00 1.90
648 662 6.465035 CCTTCCATCTATATAGGGCCTAATGC 60.465 46.154 18.91 0.00 40.16 3.56
649 663 4.588951 TCCATCTATATAGGGCCTAATGCG 59.411 45.833 18.91 10.04 42.61 4.73
650 664 4.345257 CCATCTATATAGGGCCTAATGCGT 59.655 45.833 18.91 2.76 42.61 5.24
651 665 5.163301 CCATCTATATAGGGCCTAATGCGTT 60.163 44.000 18.91 1.94 42.61 4.84
652 666 6.349300 CATCTATATAGGGCCTAATGCGTTT 58.651 40.000 18.91 1.12 42.61 3.60
653 667 6.368779 TCTATATAGGGCCTAATGCGTTTT 57.631 37.500 18.91 0.30 42.61 2.43
654 668 6.775708 TCTATATAGGGCCTAATGCGTTTTT 58.224 36.000 18.91 0.00 42.61 1.94
655 669 5.959618 ATATAGGGCCTAATGCGTTTTTC 57.040 39.130 18.91 0.00 42.61 2.29
656 670 1.917872 AGGGCCTAATGCGTTTTTCA 58.082 45.000 2.82 0.00 42.61 2.69
657 671 2.243810 AGGGCCTAATGCGTTTTTCAA 58.756 42.857 2.82 0.00 42.61 2.69
658 672 2.231235 AGGGCCTAATGCGTTTTTCAAG 59.769 45.455 2.82 0.00 42.61 3.02
659 673 2.230266 GGGCCTAATGCGTTTTTCAAGA 59.770 45.455 0.84 0.00 42.61 3.02
660 674 3.242518 GGCCTAATGCGTTTTTCAAGAC 58.757 45.455 0.00 0.00 42.61 3.01
661 675 3.242518 GCCTAATGCGTTTTTCAAGACC 58.757 45.455 0.00 0.00 0.00 3.85
662 676 3.488489 CCTAATGCGTTTTTCAAGACCG 58.512 45.455 0.00 0.00 0.00 4.79
663 677 3.058501 CCTAATGCGTTTTTCAAGACCGT 60.059 43.478 0.00 0.00 0.00 4.83
664 678 2.681152 ATGCGTTTTTCAAGACCGTC 57.319 45.000 0.00 0.00 0.00 4.79
665 679 1.658994 TGCGTTTTTCAAGACCGTCT 58.341 45.000 0.00 0.00 0.00 4.18
666 680 2.011222 TGCGTTTTTCAAGACCGTCTT 58.989 42.857 8.03 8.03 37.14 3.01
667 681 2.420722 TGCGTTTTTCAAGACCGTCTTT 59.579 40.909 11.24 0.00 33.78 2.52
668 682 2.781646 GCGTTTTTCAAGACCGTCTTTG 59.218 45.455 11.24 7.54 33.78 2.77
669 683 3.486209 GCGTTTTTCAAGACCGTCTTTGA 60.486 43.478 11.24 9.58 33.78 2.69
670 684 4.026407 CGTTTTTCAAGACCGTCTTTGAC 58.974 43.478 11.24 5.42 33.78 3.18
671 685 4.201783 CGTTTTTCAAGACCGTCTTTGACT 60.202 41.667 11.24 0.00 33.78 3.41
672 686 5.005971 CGTTTTTCAAGACCGTCTTTGACTA 59.994 40.000 11.24 2.17 33.78 2.59
673 687 6.292703 CGTTTTTCAAGACCGTCTTTGACTAT 60.293 38.462 11.24 0.00 33.78 2.12
674 688 7.415229 GTTTTTCAAGACCGTCTTTGACTATT 58.585 34.615 11.24 0.00 33.78 1.73
675 689 6.539649 TTTCAAGACCGTCTTTGACTATTG 57.460 37.500 11.24 0.00 33.78 1.90
676 690 5.462530 TCAAGACCGTCTTTGACTATTGA 57.537 39.130 11.24 1.39 33.78 2.57
677 691 6.037786 TCAAGACCGTCTTTGACTATTGAT 57.962 37.500 11.24 0.00 33.78 2.57
678 692 7.165460 TCAAGACCGTCTTTGACTATTGATA 57.835 36.000 11.24 0.00 33.78 2.15
679 693 7.608153 TCAAGACCGTCTTTGACTATTGATAA 58.392 34.615 11.24 0.00 33.78 1.75
680 694 8.092068 TCAAGACCGTCTTTGACTATTGATAAA 58.908 33.333 11.24 0.00 33.78 1.40
681 695 8.717821 CAAGACCGTCTTTGACTATTGATAAAA 58.282 33.333 11.24 0.00 33.78 1.52
682 696 9.449719 AAGACCGTCTTTGACTATTGATAAAAT 57.550 29.630 8.03 0.00 31.57 1.82
683 697 9.449719 AGACCGTCTTTGACTATTGATAAAATT 57.550 29.630 0.00 0.00 0.00 1.82
704 718 9.835389 AAAATTTATACTACATTTGCCATGCAT 57.165 25.926 0.00 0.00 38.76 3.96
708 722 9.911138 TTTATACTACATTTGCCATGCATAATG 57.089 29.630 15.31 15.31 38.76 1.90
709 723 5.857471 ACTACATTTGCCATGCATAATGT 57.143 34.783 22.59 22.59 44.10 2.71
710 724 5.593968 ACTACATTTGCCATGCATAATGTG 58.406 37.500 25.53 19.43 43.06 3.21
711 725 4.739587 ACATTTGCCATGCATAATGTGA 57.260 36.364 19.82 0.00 42.42 3.58
712 726 5.087391 ACATTTGCCATGCATAATGTGAA 57.913 34.783 19.82 3.99 42.42 3.18
713 727 5.489249 ACATTTGCCATGCATAATGTGAAA 58.511 33.333 19.82 6.41 42.42 2.69
714 728 5.938710 ACATTTGCCATGCATAATGTGAAAA 59.061 32.000 19.82 6.42 42.42 2.29
715 729 6.600032 ACATTTGCCATGCATAATGTGAAAAT 59.400 30.769 19.82 8.06 42.42 1.82
716 730 7.121463 ACATTTGCCATGCATAATGTGAAAATT 59.879 29.630 19.82 0.00 42.42 1.82
717 731 8.613482 CATTTGCCATGCATAATGTGAAAATTA 58.387 29.630 0.00 0.00 38.76 1.40
718 732 8.734218 TTTGCCATGCATAATGTGAAAATTAT 57.266 26.923 0.00 0.00 38.76 1.28
719 733 9.828039 TTTGCCATGCATAATGTGAAAATTATA 57.172 25.926 0.00 0.00 38.76 0.98
720 734 9.999660 TTGCCATGCATAATGTGAAAATTATAT 57.000 25.926 0.00 0.00 38.76 0.86
721 735 9.642327 TGCCATGCATAATGTGAAAATTATATC 57.358 29.630 0.00 0.00 32.22 1.63
722 736 9.642327 GCCATGCATAATGTGAAAATTATATCA 57.358 29.630 0.00 0.00 32.22 2.15
733 747 8.559536 TGTGAAAATTATATCATCGAAAGCTCC 58.440 33.333 0.00 0.00 0.00 4.70
734 748 8.778358 GTGAAAATTATATCATCGAAAGCTCCT 58.222 33.333 0.00 0.00 0.00 3.69
735 749 9.342308 TGAAAATTATATCATCGAAAGCTCCTT 57.658 29.630 0.00 0.00 0.00 3.36
747 761 5.803020 GAAAGCTCCTTTCACATACGAAT 57.197 39.130 11.65 0.00 46.23 3.34
748 762 6.183309 GAAAGCTCCTTTCACATACGAATT 57.817 37.500 11.65 0.00 46.23 2.17
749 763 6.575162 AAAGCTCCTTTCACATACGAATTT 57.425 33.333 0.00 0.00 0.00 1.82
750 764 5.551760 AGCTCCTTTCACATACGAATTTG 57.448 39.130 0.00 0.00 0.00 2.32
751 765 5.245531 AGCTCCTTTCACATACGAATTTGA 58.754 37.500 0.00 0.00 0.00 2.69
752 766 5.882557 AGCTCCTTTCACATACGAATTTGAT 59.117 36.000 0.00 0.00 0.00 2.57
753 767 5.967674 GCTCCTTTCACATACGAATTTGATG 59.032 40.000 0.00 2.13 0.00 3.07
754 768 6.183360 GCTCCTTTCACATACGAATTTGATGA 60.183 38.462 0.00 0.00 0.00 2.92
755 769 7.467811 GCTCCTTTCACATACGAATTTGATGAT 60.468 37.037 0.00 0.00 0.00 2.45
756 770 7.696755 TCCTTTCACATACGAATTTGATGATG 58.303 34.615 0.00 3.05 0.00 3.07
757 771 7.336679 TCCTTTCACATACGAATTTGATGATGT 59.663 33.333 0.00 3.64 0.00 3.06
758 772 7.430211 CCTTTCACATACGAATTTGATGATGTG 59.570 37.037 21.52 21.52 43.46 3.21
759 773 5.809464 TCACATACGAATTTGATGATGTGC 58.191 37.500 22.13 0.00 42.39 4.57
760 774 5.585844 TCACATACGAATTTGATGATGTGCT 59.414 36.000 22.13 1.79 42.39 4.40
761 775 6.093909 TCACATACGAATTTGATGATGTGCTT 59.906 34.615 22.13 1.56 42.39 3.91
762 776 6.748658 CACATACGAATTTGATGATGTGCTTT 59.251 34.615 18.49 0.00 38.17 3.51
763 777 6.748658 ACATACGAATTTGATGATGTGCTTTG 59.251 34.615 0.00 0.00 0.00 2.77
764 778 5.125100 ACGAATTTGATGATGTGCTTTGT 57.875 34.783 0.00 0.00 0.00 2.83
765 779 4.919168 ACGAATTTGATGATGTGCTTTGTG 59.081 37.500 0.00 0.00 0.00 3.33
766 780 4.919168 CGAATTTGATGATGTGCTTTGTGT 59.081 37.500 0.00 0.00 0.00 3.72
767 781 6.085573 CGAATTTGATGATGTGCTTTGTGTA 58.914 36.000 0.00 0.00 0.00 2.90
768 782 6.581919 CGAATTTGATGATGTGCTTTGTGTAA 59.418 34.615 0.00 0.00 0.00 2.41
769 783 7.201291 CGAATTTGATGATGTGCTTTGTGTAAG 60.201 37.037 0.00 0.00 36.90 2.34
770 784 6.389830 TTTGATGATGTGCTTTGTGTAAGT 57.610 33.333 0.00 0.00 36.19 2.24
771 785 6.389830 TTGATGATGTGCTTTGTGTAAGTT 57.610 33.333 0.00 0.00 36.19 2.66
772 786 5.761003 TGATGATGTGCTTTGTGTAAGTTG 58.239 37.500 0.00 0.00 36.19 3.16
773 787 3.963665 TGATGTGCTTTGTGTAAGTTGC 58.036 40.909 0.00 0.00 36.19 4.17
774 788 3.379688 TGATGTGCTTTGTGTAAGTTGCA 59.620 39.130 0.00 0.00 36.19 4.08
775 789 4.037803 TGATGTGCTTTGTGTAAGTTGCAT 59.962 37.500 0.00 0.00 36.19 3.96
776 790 3.704512 TGTGCTTTGTGTAAGTTGCATG 58.295 40.909 0.00 0.00 36.19 4.06
777 791 3.130164 TGTGCTTTGTGTAAGTTGCATGT 59.870 39.130 0.00 0.00 36.19 3.21
778 792 3.730715 GTGCTTTGTGTAAGTTGCATGTC 59.269 43.478 0.00 0.00 36.19 3.06
779 793 3.379688 TGCTTTGTGTAAGTTGCATGTCA 59.620 39.130 0.00 0.00 36.19 3.58
780 794 4.037803 TGCTTTGTGTAAGTTGCATGTCAT 59.962 37.500 0.00 0.00 36.19 3.06
781 795 5.240403 TGCTTTGTGTAAGTTGCATGTCATA 59.760 36.000 0.00 0.00 36.19 2.15
782 796 6.072008 TGCTTTGTGTAAGTTGCATGTCATAT 60.072 34.615 0.00 0.00 36.19 1.78
783 797 7.120432 TGCTTTGTGTAAGTTGCATGTCATATA 59.880 33.333 0.00 0.00 36.19 0.86
784 798 8.131100 GCTTTGTGTAAGTTGCATGTCATATAT 58.869 33.333 0.00 0.00 36.19 0.86
793 807 8.859236 AGTTGCATGTCATATATTATTGCTCT 57.141 30.769 0.00 0.00 0.00 4.09
794 808 9.948964 AGTTGCATGTCATATATTATTGCTCTA 57.051 29.630 0.00 0.00 0.00 2.43
797 811 9.723601 TGCATGTCATATATTATTGCTCTAACA 57.276 29.630 0.00 0.00 0.00 2.41
809 823 6.655078 ATTGCTCTAACATTTGGTCAAAGT 57.345 33.333 2.55 0.00 33.32 2.66
810 824 6.463995 TTGCTCTAACATTTGGTCAAAGTT 57.536 33.333 2.55 8.59 33.32 2.66
811 825 6.463995 TGCTCTAACATTTGGTCAAAGTTT 57.536 33.333 12.64 6.91 33.32 2.66
812 826 6.272318 TGCTCTAACATTTGGTCAAAGTTTG 58.728 36.000 9.44 9.44 33.32 2.93
813 827 5.175673 GCTCTAACATTTGGTCAAAGTTTGC 59.824 40.000 10.90 6.16 33.32 3.68
814 828 5.596845 TCTAACATTTGGTCAAAGTTTGCC 58.403 37.500 10.90 14.72 33.32 4.52
815 829 4.486125 AACATTTGGTCAAAGTTTGCCT 57.514 36.364 21.75 6.92 33.32 4.75
816 830 4.058721 ACATTTGGTCAAAGTTTGCCTC 57.941 40.909 21.75 11.42 33.32 4.70
817 831 2.861462 TTTGGTCAAAGTTTGCCTCG 57.139 45.000 21.75 0.00 0.00 4.63
818 832 2.045561 TTGGTCAAAGTTTGCCTCGA 57.954 45.000 21.75 8.65 0.00 4.04
819 833 1.593196 TGGTCAAAGTTTGCCTCGAG 58.407 50.000 21.75 5.13 0.00 4.04
820 834 1.140052 TGGTCAAAGTTTGCCTCGAGA 59.860 47.619 15.71 0.00 0.00 4.04
821 835 2.218603 GGTCAAAGTTTGCCTCGAGAA 58.781 47.619 15.71 0.00 0.00 2.87
822 836 2.616842 GGTCAAAGTTTGCCTCGAGAAA 59.383 45.455 15.71 4.43 0.00 2.52
823 837 3.548214 GGTCAAAGTTTGCCTCGAGAAAC 60.548 47.826 15.71 16.89 33.11 2.78
824 838 2.286833 TCAAAGTTTGCCTCGAGAAACG 59.713 45.455 15.71 5.54 44.09 3.60
825 839 0.586802 AAGTTTGCCTCGAGAAACGC 59.413 50.000 15.71 9.35 42.26 4.84
826 840 0.531974 AGTTTGCCTCGAGAAACGCA 60.532 50.000 15.71 12.19 42.26 5.24
827 841 0.517316 GTTTGCCTCGAGAAACGCAT 59.483 50.000 15.71 0.00 42.26 4.73
828 842 1.069227 GTTTGCCTCGAGAAACGCATT 60.069 47.619 15.71 0.00 42.26 3.56
829 843 2.087501 TTGCCTCGAGAAACGCATTA 57.912 45.000 15.71 0.00 42.26 1.90
830 844 1.640428 TGCCTCGAGAAACGCATTAG 58.360 50.000 15.71 0.00 42.26 1.73
831 845 0.931005 GCCTCGAGAAACGCATTAGG 59.069 55.000 15.71 0.00 42.26 2.69
832 846 0.931005 CCTCGAGAAACGCATTAGGC 59.069 55.000 15.71 0.00 42.26 3.93
833 847 0.931005 CTCGAGAAACGCATTAGGCC 59.069 55.000 6.58 0.00 42.26 5.19
834 848 0.461339 TCGAGAAACGCATTAGGCCC 60.461 55.000 0.00 0.00 42.26 5.80
835 849 0.462047 CGAGAAACGCATTAGGCCCT 60.462 55.000 0.00 0.00 40.31 5.19
836 850 1.202486 CGAGAAACGCATTAGGCCCTA 60.202 52.381 0.00 0.00 40.31 3.53
837 851 2.548067 CGAGAAACGCATTAGGCCCTAT 60.548 50.000 0.00 0.00 40.31 2.57
838 852 3.305813 CGAGAAACGCATTAGGCCCTATA 60.306 47.826 0.00 0.00 40.31 1.31
839 853 4.620803 CGAGAAACGCATTAGGCCCTATAT 60.621 45.833 0.00 0.00 40.31 0.86
840 854 5.393787 CGAGAAACGCATTAGGCCCTATATA 60.394 44.000 0.00 0.00 40.31 0.86
841 855 5.978814 AGAAACGCATTAGGCCCTATATAG 58.021 41.667 0.00 2.46 40.31 1.31
842 856 5.720041 AGAAACGCATTAGGCCCTATATAGA 59.280 40.000 11.53 0.00 40.31 1.98
843 857 6.384305 AGAAACGCATTAGGCCCTATATAGAT 59.616 38.462 11.53 0.00 40.31 1.98
844 858 5.537300 ACGCATTAGGCCCTATATAGATG 57.463 43.478 11.53 6.87 40.31 2.90
845 859 4.345257 ACGCATTAGGCCCTATATAGATGG 59.655 45.833 11.53 6.04 40.31 3.51
846 860 4.588951 CGCATTAGGCCCTATATAGATGGA 59.411 45.833 11.53 0.00 40.31 3.41
847 861 5.070446 CGCATTAGGCCCTATATAGATGGAA 59.930 44.000 11.53 0.00 40.31 3.53
848 862 6.529220 GCATTAGGCCCTATATAGATGGAAG 58.471 44.000 11.53 0.00 36.11 3.46
849 863 6.465035 GCATTAGGCCCTATATAGATGGAAGG 60.465 46.154 11.53 3.94 36.11 3.46
850 864 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
851 865 4.889780 AGGCCCTATATAGATGGAAGGAG 58.110 47.826 11.53 0.00 0.00 3.69
852 866 3.970640 GGCCCTATATAGATGGAAGGAGG 59.029 52.174 11.53 1.87 0.00 4.30
853 867 3.970640 GCCCTATATAGATGGAAGGAGGG 59.029 52.174 11.53 3.52 44.52 4.30
854 868 4.327010 GCCCTATATAGATGGAAGGAGGGA 60.327 50.000 11.53 0.00 44.48 4.20
855 869 5.463154 CCCTATATAGATGGAAGGAGGGAG 58.537 50.000 11.53 0.00 44.48 4.30
856 870 5.042979 CCCTATATAGATGGAAGGAGGGAGT 60.043 48.000 11.53 0.00 44.48 3.85
857 871 6.162420 CCCTATATAGATGGAAGGAGGGAGTA 59.838 46.154 11.53 0.00 44.48 2.59
858 872 7.146851 CCCTATATAGATGGAAGGAGGGAGTAT 60.147 44.444 11.53 0.00 44.48 2.12
859 873 8.293216 CCTATATAGATGGAAGGAGGGAGTATT 58.707 40.741 11.53 0.00 0.00 1.89
860 874 9.362151 CTATATAGATGGAAGGAGGGAGTATTC 57.638 40.741 3.44 0.00 0.00 1.75
872 886 7.289310 AGGAGGGAGTATTCTAGTTACACTAC 58.711 42.308 7.88 0.00 0.00 2.73
880 894 6.770746 ATTCTAGTTACACTACACCACGAT 57.229 37.500 0.00 0.00 0.00 3.73
926 940 5.316158 AGCTTCTCCATTATTACATGCCT 57.684 39.130 0.00 0.00 0.00 4.75
928 942 6.234177 AGCTTCTCCATTATTACATGCCTAC 58.766 40.000 0.00 0.00 0.00 3.18
929 943 5.412904 GCTTCTCCATTATTACATGCCTACC 59.587 44.000 0.00 0.00 0.00 3.18
930 944 6.508030 TTCTCCATTATTACATGCCTACCA 57.492 37.500 0.00 0.00 0.00 3.25
931 945 6.114187 TCTCCATTATTACATGCCTACCAG 57.886 41.667 0.00 0.00 0.00 4.00
932 946 5.843969 TCTCCATTATTACATGCCTACCAGA 59.156 40.000 0.00 0.00 0.00 3.86
1001 1030 2.223340 CGCCGCTGCTTCTCAAATTAAT 60.223 45.455 0.00 0.00 34.43 1.40
1079 1108 1.808945 CCTCGCATTTCTCATATGGCC 59.191 52.381 2.13 0.00 0.00 5.36
1237 1266 3.031457 TTTCCAACGGTCGCGTCG 61.031 61.111 19.12 19.12 0.00 5.12
1321 1350 1.135139 AGTGAGTGATCGATCAACCGG 59.865 52.381 28.83 0.00 38.75 5.28
1336 1365 2.259204 CGGCCATGCACAACCTTG 59.741 61.111 2.24 0.00 0.00 3.61
1678 1738 8.559536 CCGTACCGAAATTCATTACTACTACTA 58.440 37.037 0.00 0.00 0.00 1.82
1683 1743 9.890352 CCGAAATTCATTACTACTACTACTACC 57.110 37.037 0.00 0.00 0.00 3.18
1713 1781 5.815740 CCCAGTACTGCAGTAATAAAACGAT 59.184 40.000 27.61 0.00 31.52 3.73
1727 1795 1.722011 AACGATCATGTGACCGGAAC 58.278 50.000 9.46 6.80 34.78 3.62
1732 1800 3.243401 CGATCATGTGACCGGAACTGATA 60.243 47.826 9.46 0.00 0.00 2.15
1733 1801 4.559502 CGATCATGTGACCGGAACTGATAT 60.560 45.833 9.46 0.00 0.00 1.63
1734 1802 5.335661 CGATCATGTGACCGGAACTGATATA 60.336 44.000 9.46 0.00 0.00 0.86
1735 1803 5.196341 TCATGTGACCGGAACTGATATAC 57.804 43.478 9.46 0.00 0.00 1.47
1770 1845 4.761739 GGTGATGAGTTGATGAAAACCTCA 59.238 41.667 0.00 0.00 38.81 3.86
1773 1848 6.016777 GTGATGAGTTGATGAAAACCTCAAGT 60.017 38.462 0.00 0.00 37.67 3.16
1774 1849 7.173218 GTGATGAGTTGATGAAAACCTCAAGTA 59.827 37.037 0.00 0.00 37.67 2.24
1812 1887 3.414269 TCGGAATGGGTAAAGTGAAACC 58.586 45.455 0.00 0.00 37.80 3.27
1816 1891 4.278919 GGAATGGGTAAAGTGAAACCGAAA 59.721 41.667 0.00 0.00 37.80 3.46
1820 1895 5.593010 TGGGTAAAGTGAAACCGAAATTTG 58.407 37.500 0.00 0.00 37.80 2.32
1899 1974 3.066203 CGGCTTAAAACAAGTGGACAACT 59.934 43.478 0.00 0.00 42.60 3.16
1906 1981 1.598130 AAGTGGACAACTGCGGCTC 60.598 57.895 0.00 0.00 39.81 4.70
1912 1987 0.663153 GACAACTGCGGCTCAAGTTT 59.337 50.000 0.00 0.00 0.00 2.66
1913 1988 1.871039 GACAACTGCGGCTCAAGTTTA 59.129 47.619 0.00 0.00 0.00 2.01
1963 2096 5.726980 TGGAACAAATGCTGATAAAGCTT 57.273 34.783 0.00 0.00 45.33 3.74
1965 2098 5.243507 TGGAACAAATGCTGATAAAGCTTGA 59.756 36.000 0.00 0.00 45.33 3.02
2023 2156 0.179000 AGCAGCCCTAACGAAGATGG 59.821 55.000 0.00 0.00 0.00 3.51
2061 2195 4.393371 TCTGTCTCTAACTCTCGACACATG 59.607 45.833 0.00 0.00 33.32 3.21
2068 2202 3.944055 ACTCTCGACACATGCTTAGTT 57.056 42.857 0.00 0.00 0.00 2.24
2069 2203 4.258702 ACTCTCGACACATGCTTAGTTT 57.741 40.909 0.00 0.00 0.00 2.66
2070 2204 4.632153 ACTCTCGACACATGCTTAGTTTT 58.368 39.130 0.00 0.00 0.00 2.43
2102 2369 6.988522 AGGTTTTTGACACTAGTTTTGTTGT 58.011 32.000 0.00 0.00 0.00 3.32
2105 2372 7.808856 GGTTTTTGACACTAGTTTTGTTGTACA 59.191 33.333 0.00 0.00 0.00 2.90
2106 2373 9.349145 GTTTTTGACACTAGTTTTGTTGTACAT 57.651 29.630 0.00 0.00 0.00 2.29
2107 2374 9.915629 TTTTTGACACTAGTTTTGTTGTACATT 57.084 25.926 0.00 0.00 0.00 2.71
2111 2378 9.386010 TGACACTAGTTTTGTTGTACATTAAGT 57.614 29.630 0.00 0.00 0.00 2.24
2201 2498 4.018415 TGGGCATTAATTCCTAGCTATCCC 60.018 45.833 4.07 0.00 0.00 3.85
2217 2514 2.713967 CCCCAATTCAAGCTGGCGG 61.714 63.158 0.00 0.00 0.00 6.13
2245 2542 4.599041 TCCAAATCCAAGATGTTTCCGAT 58.401 39.130 0.00 0.00 0.00 4.18
2246 2543 4.640201 TCCAAATCCAAGATGTTTCCGATC 59.360 41.667 0.00 0.00 0.00 3.69
2247 2544 4.641989 CCAAATCCAAGATGTTTCCGATCT 59.358 41.667 0.00 0.00 0.00 2.75
2248 2545 5.449588 CCAAATCCAAGATGTTTCCGATCTG 60.450 44.000 0.00 0.00 30.30 2.90
2249 2546 3.266510 TCCAAGATGTTTCCGATCTGG 57.733 47.619 0.00 0.00 40.09 3.86
2376 2673 5.557576 AGATTATCAAGCTGAGCCATACA 57.442 39.130 0.00 0.00 0.00 2.29
2405 2702 2.450476 CCTTGAATTTGAGGGAGGTGG 58.550 52.381 1.15 0.00 0.00 4.61
2421 2718 5.667172 GGGAGGTGGTAGGGTTACTTAATAA 59.333 44.000 0.00 0.00 0.00 1.40
2424 2721 8.591940 GGAGGTGGTAGGGTTACTTAATAATAG 58.408 40.741 0.00 0.00 0.00 1.73
2425 2722 9.152327 GAGGTGGTAGGGTTACTTAATAATAGT 57.848 37.037 0.00 0.00 0.00 2.12
2456 3573 1.735018 ACTCGTCAGTCTCGTCTGATG 59.265 52.381 15.44 15.44 46.67 3.07
2463 3580 2.032117 CAGTCTCGTCTGATGGAGATCG 60.032 54.545 12.53 5.71 41.04 3.69
2499 3616 3.684788 CAGCAACGTAAATACTCCTGCTT 59.315 43.478 2.99 0.00 36.56 3.91
2501 3618 4.760204 AGCAACGTAAATACTCCTGCTTTT 59.240 37.500 0.00 0.00 35.18 2.27
2558 3677 0.609131 GCTCAGCAGGGTTAAAGCCA 60.609 55.000 0.00 0.00 38.48 4.75
2571 3690 0.035056 AAAGCCATGTCGGGAAGAGG 60.035 55.000 0.00 0.00 34.06 3.69
2646 3769 6.291427 GCTTGATAATGAATTCACGTGCATTG 60.291 38.462 18.15 7.19 33.45 2.82
2660 3783 2.609459 GTGCATTGATAACCGGTCAGAG 59.391 50.000 8.04 0.00 0.00 3.35
2664 3787 1.191535 TGATAACCGGTCAGAGGTGG 58.808 55.000 8.04 0.00 41.95 4.61
2665 3788 0.464452 GATAACCGGTCAGAGGTGGG 59.536 60.000 8.04 0.00 41.95 4.61
2666 3789 0.981277 ATAACCGGTCAGAGGTGGGG 60.981 60.000 8.04 0.00 41.95 4.96
3299 4462 3.119245 GGCTCCGTTCAACTCATGTAGTA 60.119 47.826 0.00 0.00 37.50 1.82
3300 4463 3.858238 GCTCCGTTCAACTCATGTAGTAC 59.142 47.826 0.00 0.00 37.50 2.73
3520 4685 8.781196 CCTACAAGGAGATGTCATGAATTTATG 58.219 37.037 0.00 3.85 37.67 1.90
3612 4778 0.871057 GCTCAGTCAAAGTGGTCTGC 59.129 55.000 0.00 0.00 0.00 4.26
3613 4779 1.811558 GCTCAGTCAAAGTGGTCTGCA 60.812 52.381 0.00 0.00 0.00 4.41
3619 4785 4.037208 CAGTCAAAGTGGTCTGCAATTCTT 59.963 41.667 0.00 0.00 0.00 2.52
3887 5057 1.066143 GGAGCTCCGGTTTTGATCTGA 60.066 52.381 19.06 0.00 0.00 3.27
3891 5061 3.888930 AGCTCCGGTTTTGATCTGAAAAA 59.111 39.130 0.00 0.00 0.00 1.94
3913 5083 8.472007 AAAAGTACCAAATGAAATGTCACCTA 57.528 30.769 0.00 0.00 36.31 3.08
3988 5161 2.736682 CCCGCTCGCTAAACCAACG 61.737 63.158 0.00 0.00 0.00 4.10
4204 5387 7.547697 AGTATTAGAAGGGAGCTAGGAATTC 57.452 40.000 0.00 0.00 0.00 2.17
4205 5388 7.076446 AGTATTAGAAGGGAGCTAGGAATTCA 58.924 38.462 7.93 0.00 0.00 2.57
4273 5456 8.637986 TGGTTATCACTATTTGGCAAATATTCC 58.362 33.333 27.67 19.66 33.21 3.01
4274 5457 8.088365 GGTTATCACTATTTGGCAAATATTCCC 58.912 37.037 27.67 17.69 33.21 3.97
4275 5458 8.860088 GTTATCACTATTTGGCAAATATTCCCT 58.140 33.333 27.67 16.08 33.21 4.20
4276 5459 6.959639 TCACTATTTGGCAAATATTCCCTC 57.040 37.500 27.67 0.00 33.21 4.30
4277 5460 5.833131 TCACTATTTGGCAAATATTCCCTCC 59.167 40.000 27.67 0.00 33.21 4.30
4278 5461 4.827284 ACTATTTGGCAAATATTCCCTCCG 59.173 41.667 27.67 17.62 33.21 4.63
4279 5462 2.818751 TTGGCAAATATTCCCTCCGT 57.181 45.000 0.00 0.00 0.00 4.69
4280 5463 2.818751 TGGCAAATATTCCCTCCGTT 57.181 45.000 6.65 0.00 0.00 4.44
4281 5464 2.650322 TGGCAAATATTCCCTCCGTTC 58.350 47.619 6.65 0.00 0.00 3.95
4282 5465 1.954382 GGCAAATATTCCCTCCGTTCC 59.046 52.381 0.00 0.00 0.00 3.62
4283 5466 2.422945 GGCAAATATTCCCTCCGTTCCT 60.423 50.000 0.00 0.00 0.00 3.36
4284 5467 3.181448 GGCAAATATTCCCTCCGTTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
4285 5468 4.457466 GCAAATATTCCCTCCGTTCCTAA 58.543 43.478 0.00 0.00 0.00 2.69
4286 5469 4.885325 GCAAATATTCCCTCCGTTCCTAAA 59.115 41.667 0.00 0.00 0.00 1.85
4287 5470 5.535030 GCAAATATTCCCTCCGTTCCTAAAT 59.465 40.000 0.00 0.00 0.00 1.40
4288 5471 6.713450 GCAAATATTCCCTCCGTTCCTAAATA 59.287 38.462 0.00 0.00 0.00 1.40
4289 5472 7.393515 GCAAATATTCCCTCCGTTCCTAAATAT 59.606 37.037 0.00 0.00 0.00 1.28
4290 5473 9.953565 CAAATATTCCCTCCGTTCCTAAATATA 57.046 33.333 0.00 0.00 0.00 0.86
4293 5476 7.628501 ATTCCCTCCGTTCCTAAATATAAGT 57.371 36.000 0.00 0.00 0.00 2.24
4294 5477 6.661304 TCCCTCCGTTCCTAAATATAAGTC 57.339 41.667 0.00 0.00 0.00 3.01
4295 5478 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4296 5479 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4297 5480 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4298 5481 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4299 5482 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4316 5499 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
4317 5500 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
4322 5505 9.959749 TTTTAGACATTTCAAATGGACTACAAC 57.040 29.630 14.70 0.00 0.00 3.32
4323 5506 8.684386 TTAGACATTTCAAATGGACTACAACA 57.316 30.769 14.70 1.25 0.00 3.33
4324 5507 7.765695 AGACATTTCAAATGGACTACAACAT 57.234 32.000 14.70 0.00 0.00 2.71
4325 5508 8.862325 AGACATTTCAAATGGACTACAACATA 57.138 30.769 14.70 0.00 0.00 2.29
4326 5509 9.466497 AGACATTTCAAATGGACTACAACATAT 57.534 29.630 14.70 0.00 0.00 1.78
4327 5510 9.507280 GACATTTCAAATGGACTACAACATATG 57.493 33.333 14.70 0.00 0.00 1.78
4328 5511 8.469200 ACATTTCAAATGGACTACAACATATGG 58.531 33.333 14.70 0.00 0.00 2.74
4329 5512 8.685427 CATTTCAAATGGACTACAACATATGGA 58.315 33.333 7.80 0.00 0.00 3.41
4330 5513 8.821686 TTTCAAATGGACTACAACATATGGAT 57.178 30.769 7.80 0.00 0.00 3.41
4331 5514 7.806409 TCAAATGGACTACAACATATGGATG 57.194 36.000 7.80 8.32 39.16 3.51
4333 5516 8.490311 TCAAATGGACTACAACATATGGATGTA 58.510 33.333 17.53 17.53 45.93 2.29
4334 5517 9.288576 CAAATGGACTACAACATATGGATGTAT 57.711 33.333 18.38 11.72 45.93 2.29
4335 5518 8.853077 AATGGACTACAACATATGGATGTATG 57.147 34.615 18.38 15.31 45.93 2.39
4336 5519 7.373617 TGGACTACAACATATGGATGTATGT 57.626 36.000 18.38 17.31 45.93 2.29
4337 5520 8.485578 TGGACTACAACATATGGATGTATGTA 57.514 34.615 18.38 11.27 45.93 2.29
4338 5521 8.585018 TGGACTACAACATATGGATGTATGTAG 58.415 37.037 22.20 22.20 45.93 2.74
4339 5522 8.803235 GGACTACAACATATGGATGTATGTAGA 58.197 37.037 26.03 8.59 45.93 2.59
4340 5523 9.627395 GACTACAACATATGGATGTATGTAGAC 57.373 37.037 26.03 21.22 45.93 2.59
4341 5524 9.143155 ACTACAACATATGGATGTATGTAGACA 57.857 33.333 26.03 7.65 45.93 3.41
4372 5555 5.157940 AGTGTAGATTCACTCATTGTGCT 57.842 39.130 0.00 0.00 44.07 4.40
4373 5556 5.555017 AGTGTAGATTCACTCATTGTGCTT 58.445 37.500 0.00 0.00 44.07 3.91
4374 5557 5.641209 AGTGTAGATTCACTCATTGTGCTTC 59.359 40.000 0.00 0.00 44.07 3.86
4375 5558 4.627035 TGTAGATTCACTCATTGTGCTTCG 59.373 41.667 0.00 0.00 45.81 3.79
4376 5559 3.668447 AGATTCACTCATTGTGCTTCGT 58.332 40.909 0.00 0.00 45.81 3.85
4377 5560 4.820897 AGATTCACTCATTGTGCTTCGTA 58.179 39.130 0.00 0.00 45.81 3.43
4378 5561 5.423015 AGATTCACTCATTGTGCTTCGTAT 58.577 37.500 0.00 0.00 45.81 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 9.561069 TCAAATGTATCCCTCTAATAAGCTTTC 57.439 33.333 3.20 0.00 0.00 2.62
80 82 3.010472 TGAGATCCAAAATGCCCTTCTCA 59.990 43.478 0.00 0.00 36.65 3.27
83 85 2.100418 GCTGAGATCCAAAATGCCCTTC 59.900 50.000 0.00 0.00 0.00 3.46
86 88 0.749049 GGCTGAGATCCAAAATGCCC 59.251 55.000 0.00 0.00 33.45 5.36
89 91 3.008835 TGGAGGCTGAGATCCAAAATG 57.991 47.619 4.56 0.00 42.61 2.32
215 220 7.397221 TCACATCTCAAGGTATTTCATTCTGT 58.603 34.615 0.00 0.00 0.00 3.41
244 249 7.875971 AGTTCATGAGTTTATTCTTTCCACAC 58.124 34.615 0.00 0.00 0.00 3.82
248 253 9.196552 CCAAAAGTTCATGAGTTTATTCTTTCC 57.803 33.333 0.00 0.00 30.71 3.13
249 254 9.750125 ACCAAAAGTTCATGAGTTTATTCTTTC 57.250 29.630 0.00 0.00 30.71 2.62
289 295 6.729187 AGACAAAGCTATGACTTTTCAACAC 58.271 36.000 0.00 0.00 37.78 3.32
300 306 5.280945 GTGCAACAAAAGACAAAGCTATGA 58.719 37.500 0.00 0.00 36.32 2.15
317 323 3.317150 GTTGAAATAAGGGCTGTGCAAC 58.683 45.455 0.00 0.00 37.35 4.17
319 325 1.539388 CGTTGAAATAAGGGCTGTGCA 59.461 47.619 0.00 0.00 0.00 4.57
320 326 1.539827 ACGTTGAAATAAGGGCTGTGC 59.460 47.619 0.00 0.00 0.00 4.57
321 327 5.560966 AATACGTTGAAATAAGGGCTGTG 57.439 39.130 0.00 0.00 0.00 3.66
322 328 5.163794 CGAAATACGTTGAAATAAGGGCTGT 60.164 40.000 0.00 0.00 37.22 4.40
323 329 5.263185 CGAAATACGTTGAAATAAGGGCTG 58.737 41.667 0.00 0.00 37.22 4.85
339 345 8.071368 TGTGTGTAAATTTTCAGGACGAAATAC 58.929 33.333 0.00 0.00 43.12 1.89
344 350 5.529430 ACATGTGTGTAAATTTTCAGGACGA 59.471 36.000 0.00 0.00 36.63 4.20
369 375 6.422100 CAGACATACATAGAGGCATAACACAC 59.578 42.308 0.00 0.00 0.00 3.82
371 377 6.516718 ACAGACATACATAGAGGCATAACAC 58.483 40.000 0.00 0.00 0.00 3.32
373 379 9.712305 AAATACAGACATACATAGAGGCATAAC 57.288 33.333 0.00 0.00 0.00 1.89
447 454 3.496884 GGAGGCCGGTTTTTGAAAAATTC 59.503 43.478 6.35 2.14 0.00 2.17
450 457 1.831736 TGGAGGCCGGTTTTTGAAAAA 59.168 42.857 1.90 0.00 0.00 1.94
451 458 1.486211 TGGAGGCCGGTTTTTGAAAA 58.514 45.000 1.90 0.00 0.00 2.29
480 492 9.352784 CAAGAATGTATCCGAAAATTGCTTTTA 57.647 29.630 0.00 0.00 34.73 1.52
489 501 8.172484 CGTTACAATCAAGAATGTATCCGAAAA 58.828 33.333 10.08 0.00 32.80 2.29
513 525 3.260884 ACCCACAAGTCATATCAAGTCGT 59.739 43.478 0.00 0.00 0.00 4.34
532 544 6.756221 TGTTAGAGAGAGTTTTTACTGACCC 58.244 40.000 0.00 0.00 0.00 4.46
567 581 0.036388 TCAGGGCCACGATTGTCTTC 60.036 55.000 6.18 0.00 0.00 2.87
620 634 3.970640 GGCCCTATATAGATGGAAGGAGG 59.029 52.174 11.53 1.87 0.00 4.30
621 635 4.889780 AGGCCCTATATAGATGGAAGGAG 58.110 47.826 11.53 0.00 0.00 3.69
622 636 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
623 637 6.465035 GCATTAGGCCCTATATAGATGGAAGG 60.465 46.154 11.53 3.94 36.11 3.46
624 638 6.529220 GCATTAGGCCCTATATAGATGGAAG 58.471 44.000 11.53 0.00 36.11 3.46
625 639 5.070446 CGCATTAGGCCCTATATAGATGGAA 59.930 44.000 11.53 0.00 40.31 3.53
626 640 4.588951 CGCATTAGGCCCTATATAGATGGA 59.411 45.833 11.53 0.00 40.31 3.41
627 641 4.345257 ACGCATTAGGCCCTATATAGATGG 59.655 45.833 11.53 6.04 40.31 3.51
628 642 5.537300 ACGCATTAGGCCCTATATAGATG 57.463 43.478 11.53 6.87 40.31 2.90
629 643 6.561519 AAACGCATTAGGCCCTATATAGAT 57.438 37.500 11.53 0.00 40.31 1.98
630 644 6.368779 AAAACGCATTAGGCCCTATATAGA 57.631 37.500 11.53 0.00 40.31 1.98
631 645 6.653320 TGAAAAACGCATTAGGCCCTATATAG 59.347 38.462 0.00 2.46 40.31 1.31
632 646 6.535540 TGAAAAACGCATTAGGCCCTATATA 58.464 36.000 0.00 0.00 40.31 0.86
633 647 5.381757 TGAAAAACGCATTAGGCCCTATAT 58.618 37.500 0.00 0.00 40.31 0.86
634 648 4.783055 TGAAAAACGCATTAGGCCCTATA 58.217 39.130 0.00 0.00 40.31 1.31
635 649 3.626930 TGAAAAACGCATTAGGCCCTAT 58.373 40.909 0.00 0.00 40.31 2.57
636 650 3.074675 TGAAAAACGCATTAGGCCCTA 57.925 42.857 0.00 0.00 40.31 3.53
637 651 1.917872 TGAAAAACGCATTAGGCCCT 58.082 45.000 0.00 0.00 40.31 5.19
638 652 2.230266 TCTTGAAAAACGCATTAGGCCC 59.770 45.455 0.00 0.00 40.31 5.80
639 653 3.242518 GTCTTGAAAAACGCATTAGGCC 58.757 45.455 0.00 0.00 40.31 5.19
640 654 3.242518 GGTCTTGAAAAACGCATTAGGC 58.757 45.455 0.00 0.00 39.90 3.93
641 655 3.058501 ACGGTCTTGAAAAACGCATTAGG 60.059 43.478 0.00 0.00 0.00 2.69
642 656 4.084013 AGACGGTCTTGAAAAACGCATTAG 60.084 41.667 4.45 0.00 0.00 1.73
643 657 3.810941 AGACGGTCTTGAAAAACGCATTA 59.189 39.130 4.45 0.00 0.00 1.90
644 658 2.616842 AGACGGTCTTGAAAAACGCATT 59.383 40.909 4.45 0.00 0.00 3.56
645 659 2.218603 AGACGGTCTTGAAAAACGCAT 58.781 42.857 4.45 0.00 0.00 4.73
646 660 1.658994 AGACGGTCTTGAAAAACGCA 58.341 45.000 4.45 0.00 0.00 5.24
647 661 2.750301 AAGACGGTCTTGAAAAACGC 57.250 45.000 21.86 0.00 34.98 4.84
648 662 4.026407 GTCAAAGACGGTCTTGAAAAACG 58.974 43.478 23.05 7.19 36.71 3.60
649 663 5.231265 AGTCAAAGACGGTCTTGAAAAAC 57.769 39.130 23.05 15.61 36.71 2.43
650 664 7.281324 TCAATAGTCAAAGACGGTCTTGAAAAA 59.719 33.333 23.05 10.33 36.71 1.94
651 665 6.764085 TCAATAGTCAAAGACGGTCTTGAAAA 59.236 34.615 23.05 13.38 36.71 2.29
652 666 6.285224 TCAATAGTCAAAGACGGTCTTGAAA 58.715 36.000 23.05 13.66 36.71 2.69
653 667 5.849510 TCAATAGTCAAAGACGGTCTTGAA 58.150 37.500 23.05 11.96 36.71 2.69
654 668 5.462530 TCAATAGTCAAAGACGGTCTTGA 57.537 39.130 23.05 18.16 36.71 3.02
655 669 7.827819 TTATCAATAGTCAAAGACGGTCTTG 57.172 36.000 23.05 16.41 36.71 3.02
656 670 8.842358 TTTTATCAATAGTCAAAGACGGTCTT 57.158 30.769 17.38 17.38 38.59 3.01
657 671 9.449719 AATTTTATCAATAGTCAAAGACGGTCT 57.550 29.630 4.45 4.45 37.67 3.85
678 692 9.835389 ATGCATGGCAAATGTAGTATAAATTTT 57.165 25.926 0.00 0.00 43.62 1.82
682 696 9.911138 CATTATGCATGGCAAATGTAGTATAAA 57.089 29.630 10.16 0.00 43.62 1.40
683 697 9.076781 ACATTATGCATGGCAAATGTAGTATAA 57.923 29.630 19.32 5.11 43.62 0.98
684 698 8.513774 CACATTATGCATGGCAAATGTAGTATA 58.486 33.333 19.98 0.00 42.29 1.47
685 699 7.231115 TCACATTATGCATGGCAAATGTAGTAT 59.769 33.333 19.98 1.24 42.29 2.12
686 700 6.545298 TCACATTATGCATGGCAAATGTAGTA 59.455 34.615 19.98 9.93 42.29 1.82
687 701 5.360429 TCACATTATGCATGGCAAATGTAGT 59.640 36.000 19.98 1.83 42.29 2.73
688 702 5.834169 TCACATTATGCATGGCAAATGTAG 58.166 37.500 19.98 15.43 42.29 2.74
689 703 5.848833 TCACATTATGCATGGCAAATGTA 57.151 34.783 19.98 9.95 42.29 2.29
690 704 4.739587 TCACATTATGCATGGCAAATGT 57.260 36.364 16.38 16.38 43.49 2.71
691 705 6.424176 TTTTCACATTATGCATGGCAAATG 57.576 33.333 10.16 13.39 43.62 2.32
692 706 7.633193 AATTTTCACATTATGCATGGCAAAT 57.367 28.000 10.16 0.00 43.62 2.32
693 707 8.734218 ATAATTTTCACATTATGCATGGCAAA 57.266 26.923 10.16 0.00 43.62 3.68
694 708 9.999660 ATATAATTTTCACATTATGCATGGCAA 57.000 25.926 10.16 0.00 43.62 4.52
695 709 9.642327 GATATAATTTTCACATTATGCATGGCA 57.358 29.630 10.16 0.00 44.86 4.92
696 710 9.642327 TGATATAATTTTCACATTATGCATGGC 57.358 29.630 10.16 0.00 37.17 4.40
707 721 8.559536 GGAGCTTTCGATGATATAATTTTCACA 58.440 33.333 0.00 0.00 0.00 3.58
708 722 8.778358 AGGAGCTTTCGATGATATAATTTTCAC 58.222 33.333 0.00 0.00 0.00 3.18
709 723 8.908786 AGGAGCTTTCGATGATATAATTTTCA 57.091 30.769 0.00 0.00 0.00 2.69
725 739 5.803020 ATTCGTATGTGAAAGGAGCTTTC 57.197 39.130 0.00 0.00 46.88 2.62
726 740 6.206634 TCAAATTCGTATGTGAAAGGAGCTTT 59.793 34.615 0.00 0.00 36.29 3.51
727 741 5.705441 TCAAATTCGTATGTGAAAGGAGCTT 59.295 36.000 0.00 0.00 0.00 3.74
728 742 5.245531 TCAAATTCGTATGTGAAAGGAGCT 58.754 37.500 0.00 0.00 0.00 4.09
729 743 5.545658 TCAAATTCGTATGTGAAAGGAGC 57.454 39.130 0.00 0.00 0.00 4.70
730 744 7.307493 TCATCAAATTCGTATGTGAAAGGAG 57.693 36.000 0.00 0.00 31.82 3.69
731 745 7.336679 ACATCATCAAATTCGTATGTGAAAGGA 59.663 33.333 0.00 0.00 31.82 3.36
732 746 7.430211 CACATCATCAAATTCGTATGTGAAAGG 59.570 37.037 7.32 0.00 44.30 3.11
733 747 7.044510 GCACATCATCAAATTCGTATGTGAAAG 60.045 37.037 15.34 0.00 44.30 2.62
734 748 6.746822 GCACATCATCAAATTCGTATGTGAAA 59.253 34.615 15.34 0.00 44.30 2.69
735 749 6.093909 AGCACATCATCAAATTCGTATGTGAA 59.906 34.615 15.34 0.00 44.30 3.18
736 750 5.585844 AGCACATCATCAAATTCGTATGTGA 59.414 36.000 15.34 0.00 44.30 3.58
737 751 5.813717 AGCACATCATCAAATTCGTATGTG 58.186 37.500 8.50 8.50 44.34 3.21
738 752 6.441093 AAGCACATCATCAAATTCGTATGT 57.559 33.333 0.00 0.00 0.00 2.29
739 753 6.748658 ACAAAGCACATCATCAAATTCGTATG 59.251 34.615 0.00 0.00 0.00 2.39
740 754 6.748658 CACAAAGCACATCATCAAATTCGTAT 59.251 34.615 0.00 0.00 0.00 3.06
741 755 6.085573 CACAAAGCACATCATCAAATTCGTA 58.914 36.000 0.00 0.00 0.00 3.43
742 756 4.919168 CACAAAGCACATCATCAAATTCGT 59.081 37.500 0.00 0.00 0.00 3.85
743 757 4.919168 ACACAAAGCACATCATCAAATTCG 59.081 37.500 0.00 0.00 0.00 3.34
744 758 7.596248 ACTTACACAAAGCACATCATCAAATTC 59.404 33.333 0.00 0.00 38.93 2.17
745 759 7.436118 ACTTACACAAAGCACATCATCAAATT 58.564 30.769 0.00 0.00 38.93 1.82
746 760 6.985117 ACTTACACAAAGCACATCATCAAAT 58.015 32.000 0.00 0.00 38.93 2.32
747 761 6.389830 ACTTACACAAAGCACATCATCAAA 57.610 33.333 0.00 0.00 38.93 2.69
748 762 6.207928 CAACTTACACAAAGCACATCATCAA 58.792 36.000 0.00 0.00 38.93 2.57
749 763 5.761003 CAACTTACACAAAGCACATCATCA 58.239 37.500 0.00 0.00 38.93 3.07
750 764 4.618489 GCAACTTACACAAAGCACATCATC 59.382 41.667 0.00 0.00 38.93 2.92
751 765 4.037803 TGCAACTTACACAAAGCACATCAT 59.962 37.500 0.00 0.00 38.93 2.45
752 766 3.379688 TGCAACTTACACAAAGCACATCA 59.620 39.130 0.00 0.00 38.93 3.07
753 767 3.963665 TGCAACTTACACAAAGCACATC 58.036 40.909 0.00 0.00 38.93 3.06
754 768 4.202141 ACATGCAACTTACACAAAGCACAT 60.202 37.500 0.00 0.00 38.93 3.21
755 769 3.130164 ACATGCAACTTACACAAAGCACA 59.870 39.130 0.00 0.00 38.93 4.57
756 770 3.705604 ACATGCAACTTACACAAAGCAC 58.294 40.909 0.00 0.00 38.93 4.40
757 771 3.379688 TGACATGCAACTTACACAAAGCA 59.620 39.130 0.00 0.00 38.93 3.91
758 772 3.963665 TGACATGCAACTTACACAAAGC 58.036 40.909 0.00 0.00 38.93 3.51
767 781 9.293404 AGAGCAATAATATATGACATGCAACTT 57.707 29.630 10.78 0.00 34.89 2.66
768 782 8.859236 AGAGCAATAATATATGACATGCAACT 57.141 30.769 10.78 7.52 34.89 3.16
771 785 9.723601 TGTTAGAGCAATAATATATGACATGCA 57.276 29.630 10.78 0.00 34.89 3.96
783 797 8.806146 ACTTTGACCAAATGTTAGAGCAATAAT 58.194 29.630 0.00 0.00 0.00 1.28
784 798 8.177119 ACTTTGACCAAATGTTAGAGCAATAA 57.823 30.769 0.00 0.00 0.00 1.40
785 799 7.759489 ACTTTGACCAAATGTTAGAGCAATA 57.241 32.000 0.00 0.00 0.00 1.90
786 800 6.655078 ACTTTGACCAAATGTTAGAGCAAT 57.345 33.333 0.00 0.00 0.00 3.56
787 801 6.463995 AACTTTGACCAAATGTTAGAGCAA 57.536 33.333 0.00 0.00 0.00 3.91
788 802 6.272318 CAAACTTTGACCAAATGTTAGAGCA 58.728 36.000 0.00 0.00 0.00 4.26
789 803 5.175673 GCAAACTTTGACCAAATGTTAGAGC 59.824 40.000 5.65 5.44 0.00 4.09
790 804 5.691754 GGCAAACTTTGACCAAATGTTAGAG 59.308 40.000 5.65 0.76 30.38 2.43
791 805 5.362430 AGGCAAACTTTGACCAAATGTTAGA 59.638 36.000 3.55 0.00 40.48 2.10
792 806 5.600696 AGGCAAACTTTGACCAAATGTTAG 58.399 37.500 3.55 0.00 40.48 2.34
793 807 5.596845 GAGGCAAACTTTGACCAAATGTTA 58.403 37.500 3.55 0.00 40.48 2.41
794 808 4.441792 GAGGCAAACTTTGACCAAATGTT 58.558 39.130 3.55 1.34 40.48 2.71
795 809 3.490761 CGAGGCAAACTTTGACCAAATGT 60.491 43.478 3.55 0.00 40.48 2.71
796 810 3.052036 CGAGGCAAACTTTGACCAAATG 58.948 45.455 3.55 0.00 40.48 2.32
797 811 2.955660 TCGAGGCAAACTTTGACCAAAT 59.044 40.909 3.55 0.00 40.48 2.32
798 812 2.357637 CTCGAGGCAAACTTTGACCAAA 59.642 45.455 3.91 0.00 40.48 3.28
799 813 1.946768 CTCGAGGCAAACTTTGACCAA 59.053 47.619 3.91 0.00 40.48 3.67
800 814 1.140052 TCTCGAGGCAAACTTTGACCA 59.860 47.619 13.56 0.00 40.48 4.02
801 815 1.878953 TCTCGAGGCAAACTTTGACC 58.121 50.000 13.56 5.48 40.48 4.02
802 816 3.618698 GTTTCTCGAGGCAAACTTTGAC 58.381 45.455 17.88 2.09 39.66 3.18
803 817 2.286833 CGTTTCTCGAGGCAAACTTTGA 59.713 45.455 20.89 0.00 42.86 2.69
804 818 2.639751 CGTTTCTCGAGGCAAACTTTG 58.360 47.619 20.89 7.88 42.86 2.77
805 819 1.002792 GCGTTTCTCGAGGCAAACTTT 60.003 47.619 20.89 0.00 42.86 2.66
806 820 0.586802 GCGTTTCTCGAGGCAAACTT 59.413 50.000 20.89 0.00 42.86 2.66
807 821 0.531974 TGCGTTTCTCGAGGCAAACT 60.532 50.000 20.89 0.00 42.86 2.66
808 822 0.517316 ATGCGTTTCTCGAGGCAAAC 59.483 50.000 16.32 16.18 42.79 2.93
809 823 1.234821 AATGCGTTTCTCGAGGCAAA 58.765 45.000 16.32 6.68 42.79 3.68
810 824 1.999735 CTAATGCGTTTCTCGAGGCAA 59.000 47.619 16.32 6.09 42.79 4.52
811 825 1.640428 CTAATGCGTTTCTCGAGGCA 58.360 50.000 13.56 14.40 43.55 4.75
812 826 0.931005 CCTAATGCGTTTCTCGAGGC 59.069 55.000 13.56 8.56 42.86 4.70
813 827 0.931005 GCCTAATGCGTTTCTCGAGG 59.069 55.000 13.56 0.00 42.86 4.63
814 828 0.931005 GGCCTAATGCGTTTCTCGAG 59.069 55.000 5.93 5.93 42.61 4.04
815 829 0.461339 GGGCCTAATGCGTTTCTCGA 60.461 55.000 0.84 0.00 42.61 4.04
816 830 0.462047 AGGGCCTAATGCGTTTCTCG 60.462 55.000 2.82 0.00 42.61 4.04
817 831 2.614829 TAGGGCCTAATGCGTTTCTC 57.385 50.000 11.78 0.00 42.61 2.87
818 832 4.910458 ATATAGGGCCTAATGCGTTTCT 57.090 40.909 18.91 0.00 42.61 2.52
819 833 5.974108 TCTATATAGGGCCTAATGCGTTTC 58.026 41.667 18.91 0.00 42.61 2.78
820 834 6.349300 CATCTATATAGGGCCTAATGCGTTT 58.651 40.000 18.91 1.12 42.61 3.60
821 835 5.163301 CCATCTATATAGGGCCTAATGCGTT 60.163 44.000 18.91 1.94 42.61 4.84
822 836 4.345257 CCATCTATATAGGGCCTAATGCGT 59.655 45.833 18.91 2.76 42.61 5.24
823 837 4.588951 TCCATCTATATAGGGCCTAATGCG 59.411 45.833 18.91 10.04 42.61 4.73
824 838 6.465035 CCTTCCATCTATATAGGGCCTAATGC 60.465 46.154 18.91 0.00 40.16 3.56
825 839 6.846505 TCCTTCCATCTATATAGGGCCTAATG 59.153 42.308 18.91 15.42 0.00 1.90
826 840 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
827 841 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
828 842 5.103043 CCTCCTTCCATCTATATAGGGCCTA 60.103 48.000 17.16 17.16 0.00 3.93
829 843 4.327332 CCTCCTTCCATCTATATAGGGCCT 60.327 50.000 12.58 12.58 0.00 5.19
830 844 3.970640 CCTCCTTCCATCTATATAGGGCC 59.029 52.174 9.89 0.00 0.00 5.80
831 845 3.970640 CCCTCCTTCCATCTATATAGGGC 59.029 52.174 9.89 0.00 36.30 5.19
832 846 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
833 847 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
834 848 9.362151 GAATACTCCCTCCTTCCATCTATATAG 57.638 40.741 3.10 3.10 0.00 1.31
835 849 9.086059 AGAATACTCCCTCCTTCCATCTATATA 57.914 37.037 0.00 0.00 0.00 0.86
836 850 7.960821 AGAATACTCCCTCCTTCCATCTATAT 58.039 38.462 0.00 0.00 0.00 0.86
837 851 7.363759 AGAATACTCCCTCCTTCCATCTATA 57.636 40.000 0.00 0.00 0.00 1.31
838 852 6.239856 AGAATACTCCCTCCTTCCATCTAT 57.760 41.667 0.00 0.00 0.00 1.98
839 853 5.688220 AGAATACTCCCTCCTTCCATCTA 57.312 43.478 0.00 0.00 0.00 1.98
840 854 4.567987 AGAATACTCCCTCCTTCCATCT 57.432 45.455 0.00 0.00 0.00 2.90
841 855 5.399113 ACTAGAATACTCCCTCCTTCCATC 58.601 45.833 0.00 0.00 0.00 3.51
842 856 5.426325 ACTAGAATACTCCCTCCTTCCAT 57.574 43.478 0.00 0.00 0.00 3.41
843 857 4.901785 ACTAGAATACTCCCTCCTTCCA 57.098 45.455 0.00 0.00 0.00 3.53
844 858 6.040729 GTGTAACTAGAATACTCCCTCCTTCC 59.959 46.154 0.00 0.00 0.00 3.46
845 859 7.041635 GTGTAACTAGAATACTCCCTCCTTC 57.958 44.000 0.00 0.00 0.00 3.46
872 886 3.071459 GCGCTGTTCGATCGTGGTG 62.071 63.158 15.94 10.92 41.67 4.17
898 912 7.277539 GCATGTAATAATGGAGAAGCTAGCTAG 59.722 40.741 19.70 16.84 0.00 3.42
899 913 7.099764 GCATGTAATAATGGAGAAGCTAGCTA 58.900 38.462 19.70 1.28 0.00 3.32
900 914 5.936956 GCATGTAATAATGGAGAAGCTAGCT 59.063 40.000 12.68 12.68 0.00 3.32
901 915 5.123027 GGCATGTAATAATGGAGAAGCTAGC 59.877 44.000 6.62 6.62 0.00 3.42
929 943 1.881602 GCTTGCTCCAGCCTTTCTG 59.118 57.895 0.00 0.00 42.49 3.02
930 944 4.412075 GCTTGCTCCAGCCTTTCT 57.588 55.556 0.00 0.00 41.18 2.52
1001 1030 1.997311 CTGGCCTCCTCCATGTCCA 60.997 63.158 3.32 0.00 35.22 4.02
1237 1266 4.717313 GTTGCCCCTCCACCGGAC 62.717 72.222 9.46 0.00 0.00 4.79
1321 1350 2.658422 CCCAAGGTTGTGCATGGC 59.342 61.111 0.00 0.00 0.00 4.40
1336 1365 3.490759 CACGATCGTGCTGTGCCC 61.491 66.667 32.93 0.00 39.39 5.36
1395 1455 1.002011 GGCTCCACCACCTTCTTCC 60.002 63.158 0.00 0.00 38.86 3.46
1678 1738 0.490468 AGTACTGGGGTGGTGGTAGT 59.510 55.000 0.00 0.00 0.00 2.73
1680 1740 1.196104 GCAGTACTGGGGTGGTGGTA 61.196 60.000 23.95 0.00 0.00 3.25
1681 1741 2.526046 GCAGTACTGGGGTGGTGGT 61.526 63.158 23.95 0.00 0.00 4.16
1682 1742 2.351276 GCAGTACTGGGGTGGTGG 59.649 66.667 23.95 0.00 0.00 4.61
1683 1743 1.003355 CTGCAGTACTGGGGTGGTG 60.003 63.158 23.95 0.00 0.00 4.17
1684 1744 0.178915 TACTGCAGTACTGGGGTGGT 60.179 55.000 22.67 0.00 0.00 4.16
1685 1745 0.981183 TTACTGCAGTACTGGGGTGG 59.019 55.000 26.02 0.00 0.00 4.61
1686 1746 4.481368 TTATTACTGCAGTACTGGGGTG 57.519 45.455 26.02 0.00 0.00 4.61
1713 1781 4.647399 TGTATATCAGTTCCGGTCACATGA 59.353 41.667 0.00 6.30 0.00 3.07
1770 1845 5.501715 CGAATCAGCGTGCAAATTATACTT 58.498 37.500 0.00 0.00 0.00 2.24
1773 1848 4.123506 TCCGAATCAGCGTGCAAATTATA 58.876 39.130 0.00 0.00 0.00 0.98
1774 1849 2.942376 TCCGAATCAGCGTGCAAATTAT 59.058 40.909 0.00 0.00 0.00 1.28
1812 1887 2.405025 GGCTTTTCGCAGACAAATTTCG 59.595 45.455 0.00 0.00 41.67 3.46
1816 1891 1.336240 GCTGGCTTTTCGCAGACAAAT 60.336 47.619 0.00 0.00 41.67 2.32
1820 1895 3.343972 TGCTGGCTTTTCGCAGAC 58.656 55.556 0.00 0.00 41.67 3.51
1899 1974 8.392612 GTTTTATAGTTATAAACTTGAGCCGCA 58.607 33.333 4.29 0.00 42.81 5.69
1906 1981 9.977762 GACCACGGTTTTATAGTTATAAACTTG 57.022 33.333 4.29 0.00 42.81 3.16
1912 1987 7.591057 CGAATCGACCACGGTTTTATAGTTATA 59.409 37.037 0.00 0.00 43.14 0.98
1913 1988 6.418819 CGAATCGACCACGGTTTTATAGTTAT 59.581 38.462 0.00 0.00 43.14 1.89
1970 2103 2.890474 CGGCTGGCGCGTAAGAAT 60.890 61.111 11.55 0.00 43.02 2.40
2008 2141 0.178068 TGCTCCATCTTCGTTAGGGC 59.822 55.000 0.00 0.00 0.00 5.19
2061 2195 8.608317 TCAAAAACCTTAAATGCAAAACTAAGC 58.392 29.630 0.00 0.00 0.00 3.09
2068 2202 8.254508 ACTAGTGTCAAAAACCTTAAATGCAAA 58.745 29.630 0.00 0.00 0.00 3.68
2069 2203 7.777095 ACTAGTGTCAAAAACCTTAAATGCAA 58.223 30.769 0.00 0.00 0.00 4.08
2070 2204 7.341445 ACTAGTGTCAAAAACCTTAAATGCA 57.659 32.000 0.00 0.00 0.00 3.96
2105 2372 7.011382 ACAGCTAGCCTACCTACATACTTAAT 58.989 38.462 12.13 0.00 0.00 1.40
2106 2373 6.371278 ACAGCTAGCCTACCTACATACTTAA 58.629 40.000 12.13 0.00 0.00 1.85
2107 2374 5.950023 ACAGCTAGCCTACCTACATACTTA 58.050 41.667 12.13 0.00 0.00 2.24
2109 2376 4.456662 ACAGCTAGCCTACCTACATACT 57.543 45.455 12.13 0.00 0.00 2.12
2110 2377 4.262079 CCAACAGCTAGCCTACCTACATAC 60.262 50.000 12.13 0.00 0.00 2.39
2111 2378 3.895656 CCAACAGCTAGCCTACCTACATA 59.104 47.826 12.13 0.00 0.00 2.29
2201 2498 2.887360 CCCGCCAGCTTGAATTGG 59.113 61.111 0.00 0.00 37.53 3.16
2217 2514 5.796424 AACATCTTGGATTTGGATATGCC 57.204 39.130 0.00 0.00 37.10 4.40
2245 2542 2.515979 TTGCTTCCGCCAGACCAGA 61.516 57.895 0.00 0.00 34.43 3.86
2246 2543 2.032528 TTGCTTCCGCCAGACCAG 59.967 61.111 0.00 0.00 34.43 4.00
2247 2544 2.281484 GTTGCTTCCGCCAGACCA 60.281 61.111 0.00 0.00 34.43 4.02
2248 2545 2.281484 TGTTGCTTCCGCCAGACC 60.281 61.111 0.00 0.00 34.43 3.85
2249 2546 2.617274 GGTGTTGCTTCCGCCAGAC 61.617 63.158 0.00 0.00 34.43 3.51
2368 2665 1.456331 GGGGCATTGCTGTATGGCT 60.456 57.895 8.82 0.00 46.85 4.75
2376 2673 2.235402 CTCAAATTCAAGGGGCATTGCT 59.765 45.455 8.82 0.00 0.00 3.91
2424 2721 7.221838 ACGAGACTGACGAGTACTAGTATTAAC 59.778 40.741 8.75 0.00 30.16 2.01
2425 2722 7.261325 ACGAGACTGACGAGTACTAGTATTAA 58.739 38.462 8.75 0.00 30.16 1.40
2456 3573 1.153549 GTCTGGTGGTGCGATCTCC 60.154 63.158 0.00 0.00 0.00 3.71
2463 3580 3.360340 GCTGCTGTCTGGTGGTGC 61.360 66.667 0.00 0.00 0.00 5.01
2499 3616 6.257411 CGTAGAGCAGTACTAGTACTAGCAAA 59.743 42.308 33.99 24.39 43.98 3.68
2501 3618 5.288015 CGTAGAGCAGTACTAGTACTAGCA 58.712 45.833 33.99 22.68 43.98 3.49
2511 3628 0.681564 AGCAGCCGTAGAGCAGTACT 60.682 55.000 0.00 0.00 34.23 2.73
2512 3629 1.022735 TAGCAGCCGTAGAGCAGTAC 58.977 55.000 0.00 0.00 34.23 2.73
2558 3677 0.539051 CTTCTGCCTCTTCCCGACAT 59.461 55.000 0.00 0.00 0.00 3.06
2571 3690 1.565305 CTACTGTGGCGATCTTCTGC 58.435 55.000 0.00 0.00 0.00 4.26
2646 3769 0.464452 CCCACCTCTGACCGGTTATC 59.536 60.000 9.42 0.00 30.82 1.75
2664 3787 3.631487 GAAGTTGCATGCACGGCCC 62.631 63.158 22.58 6.14 0.00 5.80
2665 3788 2.126346 GAAGTTGCATGCACGGCC 60.126 61.111 22.58 8.80 0.00 6.13
2666 3789 1.443194 CAGAAGTTGCATGCACGGC 60.443 57.895 22.58 13.71 0.00 5.68
2667 3790 0.311790 AACAGAAGTTGCATGCACGG 59.688 50.000 22.58 12.19 36.39 4.94
2668 3791 2.124011 AAACAGAAGTTGCATGCACG 57.876 45.000 22.58 7.34 38.17 5.34
2678 3801 9.678260 AAGCATATGATTAGAGAAAACAGAAGT 57.322 29.630 3.95 0.00 0.00 3.01
3299 4462 2.089980 AGGACGCACGATTGTACTAGT 58.910 47.619 0.00 0.00 0.00 2.57
3300 4463 2.159421 ACAGGACGCACGATTGTACTAG 60.159 50.000 0.00 0.00 0.00 2.57
3520 4685 2.084546 AGAAATAAAGGCACTGACCGC 58.915 47.619 0.00 0.00 40.86 5.68
3612 4778 5.709164 AGGTCTCCATGAGAAACAAGAATTG 59.291 40.000 0.00 0.00 45.85 2.32
3613 4779 5.709164 CAGGTCTCCATGAGAAACAAGAATT 59.291 40.000 0.00 0.00 40.59 2.17
3619 4785 3.554960 CGTTCAGGTCTCCATGAGAAACA 60.555 47.826 0.00 0.00 40.59 2.83
3887 5057 7.791029 AGGTGACATTTCATTTGGTACTTTTT 58.209 30.769 0.00 0.00 33.11 1.94
3891 5061 7.888021 TCATTAGGTGACATTTCATTTGGTACT 59.112 33.333 0.00 0.00 33.11 2.73
3903 5073 3.674997 AGCGTGTTCATTAGGTGACATT 58.325 40.909 0.00 0.00 36.32 2.71
3913 5083 5.539048 ACAGTAACTTCTAGCGTGTTCATT 58.461 37.500 0.00 0.00 0.00 2.57
3988 5161 3.316308 ACAATTTCATTGCGGATCTAGCC 59.684 43.478 10.35 0.00 43.98 3.93
4000 5173 6.980397 GTGGTGAAACAGAAGACAATTTCATT 59.020 34.615 1.97 0.00 41.64 2.57
4102 5275 7.308589 CGTTTGTCTTTCCAGGTTAATCAGATT 60.309 37.037 0.20 0.20 0.00 2.40
4204 5387 2.668457 CGTAAAGCTCTGCCTACAACTG 59.332 50.000 0.00 0.00 0.00 3.16
4205 5388 2.561419 TCGTAAAGCTCTGCCTACAACT 59.439 45.455 0.00 0.00 0.00 3.16
4271 5454 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4272 5455 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4273 5456 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4290 5473 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
4291 5474 9.136323 AGTCCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 14.21 39.41 3.24
4296 5479 9.959749 GTTGTAGTCCATTTGAAATGTCTAAAA 57.040 29.630 15.93 14.59 0.00 1.52
4297 5480 9.126151 TGTTGTAGTCCATTTGAAATGTCTAAA 57.874 29.630 15.93 10.39 0.00 1.85
4298 5481 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
4299 5482 8.862325 ATGTTGTAGTCCATTTGAAATGTCTA 57.138 30.769 15.93 13.97 0.00 2.59
4300 5483 7.765695 ATGTTGTAGTCCATTTGAAATGTCT 57.234 32.000 15.93 14.81 0.00 3.41
4301 5484 9.507280 CATATGTTGTAGTCCATTTGAAATGTC 57.493 33.333 15.93 9.10 0.00 3.06
4302 5485 8.469200 CCATATGTTGTAGTCCATTTGAAATGT 58.531 33.333 15.93 1.43 0.00 2.71
4303 5486 8.685427 TCCATATGTTGTAGTCCATTTGAAATG 58.315 33.333 10.84 10.84 0.00 2.32
4304 5487 8.821686 TCCATATGTTGTAGTCCATTTGAAAT 57.178 30.769 1.24 0.00 0.00 2.17
4305 5488 8.685427 CATCCATATGTTGTAGTCCATTTGAAA 58.315 33.333 1.24 0.00 0.00 2.69
4306 5489 7.833682 ACATCCATATGTTGTAGTCCATTTGAA 59.166 33.333 1.24 0.00 44.07 2.69
4307 5490 7.345691 ACATCCATATGTTGTAGTCCATTTGA 58.654 34.615 1.24 0.00 44.07 2.69
4308 5491 7.572523 ACATCCATATGTTGTAGTCCATTTG 57.427 36.000 1.24 0.00 44.07 2.32
4309 5492 9.288576 CATACATCCATATGTTGTAGTCCATTT 57.711 33.333 16.38 1.83 44.07 2.32
4310 5493 8.439971 ACATACATCCATATGTTGTAGTCCATT 58.560 33.333 16.38 2.34 44.07 3.16
4311 5494 7.977818 ACATACATCCATATGTTGTAGTCCAT 58.022 34.615 16.38 3.57 44.07 3.41
4312 5495 7.373617 ACATACATCCATATGTTGTAGTCCA 57.626 36.000 16.38 1.84 44.07 4.02
4313 5496 8.803235 TCTACATACATCCATATGTTGTAGTCC 58.197 37.037 22.56 0.00 44.07 3.85
4314 5497 9.627395 GTCTACATACATCCATATGTTGTAGTC 57.373 37.037 22.56 18.41 44.07 2.59
4315 5498 9.143155 TGTCTACATACATCCATATGTTGTAGT 57.857 33.333 22.56 15.48 44.07 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.