Multiple sequence alignment - TraesCS5A01G188000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G188000 chr5A 100.000 3457 0 0 1 3457 389715642 389719098 0.000000e+00 6384.0
1 TraesCS5A01G188000 chr5A 85.057 87 12 1 689 775 365256974 365256889 1.710000e-13 87.9
2 TraesCS5A01G188000 chr5A 97.826 46 1 0 2880 2925 417605026 417605071 2.860000e-11 80.5
3 TraesCS5A01G188000 chr5D 95.629 2860 83 19 1 2835 308228584 308225742 0.000000e+00 4551.0
4 TraesCS5A01G188000 chr5D 94.928 138 7 0 300 437 529218165 529218302 2.090000e-52 217.0
5 TraesCS5A01G188000 chr5D 86.822 129 9 2 3335 3457 308225651 308225525 1.670000e-28 137.0
6 TraesCS5A01G188000 chr5D 97.436 39 1 0 2843 2881 368987687 368987649 2.230000e-07 67.6
7 TraesCS5A01G188000 chr5D 92.683 41 3 0 2841 2881 233974912 233974952 3.730000e-05 60.2
8 TraesCS5A01G188000 chr5B 91.794 1511 73 16 447 1930 353038586 353037100 0.000000e+00 2056.0
9 TraesCS5A01G188000 chr5B 91.986 886 37 11 1960 2835 353037100 353036239 0.000000e+00 1212.0
10 TraesCS5A01G188000 chr5B 91.103 281 17 3 23 303 353038856 353038584 1.170000e-99 374.0
11 TraesCS5A01G188000 chr5B 94.643 56 3 0 2927 2982 208583420 208583475 1.710000e-13 87.9
12 TraesCS5A01G188000 chr5B 90.196 51 5 0 2876 2926 542752137 542752087 2.230000e-07 67.6
13 TraesCS5A01G188000 chr7B 85.375 253 32 4 3072 3323 138467180 138467428 1.230000e-64 257.0
14 TraesCS5A01G188000 chr7B 90.909 55 4 1 3021 3074 734819629 734819575 4.790000e-09 73.1
15 TraesCS5A01G188000 chr7B 90.909 55 4 1 3021 3074 734889927 734889873 4.790000e-09 73.1
16 TraesCS5A01G188000 chr2B 96.350 137 5 0 301 437 608226725 608226861 3.470000e-55 226.0
17 TraesCS5A01G188000 chr4A 95.620 137 6 0 301 437 137966979 137967115 1.620000e-53 220.0
18 TraesCS5A01G188000 chr4A 95.620 137 6 0 301 437 137972830 137972694 1.620000e-53 220.0
19 TraesCS5A01G188000 chr4A 85.841 113 15 1 3072 3184 3063436 3063547 6.060000e-23 119.0
20 TraesCS5A01G188000 chr4A 96.296 54 2 0 2929 2982 403270852 403270799 4.750000e-14 89.8
21 TraesCS5A01G188000 chr4A 97.872 47 1 0 3029 3075 195971615 195971569 7.950000e-12 82.4
22 TraesCS5A01G188000 chr4A 94.118 51 1 2 3025 3074 115298552 115298601 3.700000e-10 76.8
23 TraesCS5A01G188000 chr4A 94.872 39 2 0 2843 2881 534518690 534518652 1.040000e-05 62.1
24 TraesCS5A01G188000 chr3A 95.620 137 6 0 301 437 585500349 585500213 1.620000e-53 220.0
25 TraesCS5A01G188000 chr3A 100.000 41 0 0 2841 2881 640371177 640371137 3.700000e-10 76.8
26 TraesCS5A01G188000 chr3A 100.000 38 0 0 2844 2881 560677295 560677332 1.720000e-08 71.3
27 TraesCS5A01G188000 chr3A 93.617 47 3 0 2879 2925 697389748 697389794 1.720000e-08 71.3
28 TraesCS5A01G188000 chr2D 95.620 137 6 0 301 437 134301488 134301624 1.620000e-53 220.0
29 TraesCS5A01G188000 chr2D 91.304 69 6 0 689 757 598800774 598800706 1.020000e-15 95.3
30 TraesCS5A01G188000 chr2D 97.826 46 1 0 3025 3070 194269700 194269745 2.860000e-11 80.5
31 TraesCS5A01G188000 chr2A 93.243 148 9 1 291 437 504326610 504326757 2.090000e-52 217.0
32 TraesCS5A01G188000 chr2A 96.000 50 1 1 3026 3075 689713837 689713885 2.860000e-11 80.5
33 TraesCS5A01G188000 chr2A 93.617 47 3 0 2879 2925 585738469 585738423 1.720000e-08 71.3
34 TraesCS5A01G188000 chr1D 94.891 137 7 0 301 437 463470932 463470796 7.510000e-52 215.0
35 TraesCS5A01G188000 chr1D 93.617 47 3 0 2879 2925 38912214 38912260 1.720000e-08 71.3
36 TraesCS5A01G188000 chr1D 92.683 41 3 0 2841 2881 447223216 447223256 3.730000e-05 60.2
37 TraesCS5A01G188000 chr6B 78.431 255 45 9 3072 3323 701189296 701189543 1.280000e-34 158.0
38 TraesCS5A01G188000 chr6B 92.537 67 5 0 710 776 279034399 279034465 2.840000e-16 97.1
39 TraesCS5A01G188000 chr6B 96.000 50 1 1 3025 3074 22733700 22733748 2.860000e-11 80.5
40 TraesCS5A01G188000 chr6B 94.000 50 3 0 2876 2925 19474519 19474568 3.700000e-10 76.8
41 TraesCS5A01G188000 chr6B 93.750 48 2 1 2879 2925 625777166 625777213 1.720000e-08 71.3
42 TraesCS5A01G188000 chr6B 91.837 49 4 0 2877 2925 133697082 133697130 6.190000e-08 69.4
43 TraesCS5A01G188000 chr7D 83.537 164 21 3 690 851 102581719 102581560 7.730000e-32 148.0
44 TraesCS5A01G188000 chr7D 87.402 127 11 4 3199 3323 136939819 136939696 1.290000e-29 141.0
45 TraesCS5A01G188000 chr7D 82.692 156 20 5 526 681 387333756 387333608 7.790000e-27 132.0
46 TraesCS5A01G188000 chr7D 98.246 57 1 0 2927 2983 548775017 548775073 2.200000e-17 100.0
47 TraesCS5A01G188000 chr7D 97.917 48 0 1 3029 3075 193352735 193352688 7.950000e-12 82.4
48 TraesCS5A01G188000 chr7D 94.231 52 1 2 565 615 469530192 469530242 1.030000e-10 78.7
49 TraesCS5A01G188000 chr7D 97.561 41 1 0 2841 2881 191547134 191547174 1.720000e-08 71.3
50 TraesCS5A01G188000 chr7A 81.343 134 16 7 549 681 437402805 437402680 2.200000e-17 100.0
51 TraesCS5A01G188000 chr6D 92.537 67 5 0 710 776 156441819 156441885 2.840000e-16 97.1
52 TraesCS5A01G188000 chr6D 100.000 45 0 0 3026 3070 451541591 451541635 2.210000e-12 84.2
53 TraesCS5A01G188000 chr6D 97.826 46 1 0 3023 3068 357008904 357008949 2.860000e-11 80.5
54 TraesCS5A01G188000 chr1A 96.000 50 2 0 3025 3074 372555173 372555222 7.950000e-12 82.4
55 TraesCS5A01G188000 chr3B 95.918 49 2 0 3029 3077 652291789 652291741 2.860000e-11 80.5
56 TraesCS5A01G188000 chr3B 95.918 49 1 1 3025 3073 168684309 168684262 1.030000e-10 78.7
57 TraesCS5A01G188000 chr4B 92.727 55 2 2 3026 3079 246455373 246455426 1.030000e-10 78.7
58 TraesCS5A01G188000 chr3D 94.231 52 2 1 3026 3077 490039655 490039605 1.030000e-10 78.7
59 TraesCS5A01G188000 chr3D 93.617 47 3 0 2876 2922 438431032 438430986 1.720000e-08 71.3
60 TraesCS5A01G188000 chr6A 92.453 53 3 1 3025 3077 235083827 235083776 1.330000e-09 75.0
61 TraesCS5A01G188000 chr4D 97.561 41 1 0 2841 2881 379253123 379253163 1.720000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G188000 chr5A 389715642 389719098 3456 False 6384 6384 100.000000 1 3457 1 chr5A.!!$F1 3456
1 TraesCS5A01G188000 chr5D 308225525 308228584 3059 True 2344 4551 91.225500 1 3457 2 chr5D.!!$R2 3456
2 TraesCS5A01G188000 chr5B 353036239 353038856 2617 True 1214 2056 91.627667 23 2835 3 chr5B.!!$R2 2812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
592 593 1.132849 ACCCCTCCCATCGATACATGA 60.133 52.381 0.0 0.0 0.00 3.07 F
843 852 1.260561 CATTGCTACGCACGGGTATTC 59.739 52.381 0.0 0.0 38.71 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2284 2320 1.604593 GGCAGTCCACAGGCATGTT 60.605 57.895 0.00 0.00 37.65 2.71 R
2842 2887 1.421268 TCACCCTAGGGCTATGCATTG 59.579 52.381 28.88 15.66 39.32 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 138 3.159213 TCCTGGTCAAGCAATTGATGT 57.841 42.857 10.34 0.00 33.02 3.06
262 263 9.399797 TGTTTCTCATTTGCTGATATGAACTAT 57.600 29.630 0.00 0.00 32.10 2.12
311 312 5.516059 TCATACTATCATACTCCCTCCGT 57.484 43.478 0.00 0.00 0.00 4.69
324 325 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
442 443 9.071276 GCATTGGAATATCTAAAAAGATGGAGA 57.929 33.333 0.00 0.00 0.00 3.71
561 562 5.238583 AGGAGAGATAGTTGGTTTCGTTTG 58.761 41.667 0.00 0.00 0.00 2.93
592 593 1.132849 ACCCCTCCCATCGATACATGA 60.133 52.381 0.00 0.00 0.00 3.07
603 604 1.747444 GATACATGACCCCCTCCCAT 58.253 55.000 0.00 0.00 0.00 4.00
638 639 2.557317 ACCACGCGATAACCCTAATTG 58.443 47.619 15.93 0.00 0.00 2.32
642 643 4.274950 CCACGCGATAACCCTAATTGATTT 59.725 41.667 15.93 0.00 0.00 2.17
783 785 9.293404 CAACATATCTCAATCTCAACCCAATAT 57.707 33.333 0.00 0.00 0.00 1.28
843 852 1.260561 CATTGCTACGCACGGGTATTC 59.739 52.381 0.00 0.00 38.71 1.75
860 869 9.086758 ACGGGTATTCAGCTAGTACTATTTAAT 57.913 33.333 2.33 4.51 0.00 1.40
921 933 9.559958 CCTGACACATTAGTCATTTAATTTCAC 57.440 33.333 0.00 0.00 46.51 3.18
922 934 9.559958 CTGACACATTAGTCATTTAATTTCACC 57.440 33.333 0.00 0.00 46.51 4.02
923 935 9.295825 TGACACATTAGTCATTTAATTTCACCT 57.704 29.630 0.00 0.00 43.18 4.00
1041 1053 2.811873 GCAGAACCCAACAGACATGACT 60.812 50.000 0.00 0.00 0.00 3.41
1308 1332 8.429493 AGGTTAACAGTCAAGTTTTGTACTAC 57.571 34.615 8.10 0.00 35.54 2.73
1321 1345 6.660094 AGTTTTGTACTACTTGTTTCCAACCA 59.340 34.615 0.00 0.00 34.56 3.67
1333 1357 4.200092 GTTTCCAACCACTGAAGAAGTCT 58.800 43.478 0.00 0.00 36.83 3.24
1335 1359 4.503714 TCCAACCACTGAAGAAGTCTTT 57.496 40.909 0.00 0.00 36.83 2.52
1365 1389 3.184382 TGAGGAACCAGAGGTGTATCA 57.816 47.619 0.00 0.00 35.34 2.15
1590 1618 7.382488 ACATCGTGTCAAAGAATATCCTTATCG 59.618 37.037 0.00 0.00 0.00 2.92
1598 1626 4.759782 AGAATATCCTTATCGGCGGAATG 58.240 43.478 7.21 0.00 32.12 2.67
1853 1881 9.689976 TTGATATTAACAGAAACACACCAAATG 57.310 29.630 0.00 0.00 0.00 2.32
1932 1960 9.877137 GGAAATTGGAAACATATTGTTGTTTTC 57.123 29.630 4.28 3.18 46.84 2.29
2054 2084 8.560355 TTTGTCTGATTAGCTTATGTTTAGCA 57.440 30.769 0.00 0.00 41.11 3.49
2132 2164 1.694150 AGTGCAAGGCTAGTGACAGAA 59.306 47.619 0.00 0.00 0.00 3.02
2148 2181 6.488006 AGTGACAGAATTTTCACAGCATACTT 59.512 34.615 14.63 0.00 43.94 2.24
2200 2233 7.429374 TCATATTGACATCAGAAGAACTCCT 57.571 36.000 0.00 0.00 0.00 3.69
2284 2320 5.697178 CCAAGTTGATTGTTGCATGAATTGA 59.303 36.000 3.87 0.00 37.17 2.57
2375 2411 2.508887 GAGCTGGAGCAGAGCGTG 60.509 66.667 0.00 0.00 45.16 5.34
2515 2551 6.553953 TGGTGGCTATATGACAGAAGTTTA 57.446 37.500 0.00 0.00 31.98 2.01
2517 2553 6.070481 TGGTGGCTATATGACAGAAGTTTACA 60.070 38.462 0.00 0.00 31.98 2.41
2624 2667 3.205395 CTCTCCAGAGCCCAGACG 58.795 66.667 0.00 0.00 35.13 4.18
2632 2675 1.153429 GAGCCCAGACGCCGTTATT 60.153 57.895 0.00 0.00 0.00 1.40
2669 2712 6.323996 TGTTTCCCTATGATCATTCTCGTACT 59.676 38.462 14.65 0.00 0.00 2.73
2716 2759 1.703438 CTGCAAGAGCCAGACGATGC 61.703 60.000 0.00 0.00 41.13 3.91
2720 2763 1.260538 AAGAGCCAGACGATGCCTCA 61.261 55.000 6.25 0.00 0.00 3.86
2835 2880 2.481854 TGCGTTGCATGCTGAATTTTT 58.518 38.095 20.33 0.00 31.71 1.94
2859 2904 4.716784 TCTATACAATGCATAGCCCTAGGG 59.283 45.833 24.89 24.89 38.57 3.53
2860 2905 1.522900 ACAATGCATAGCCCTAGGGT 58.477 50.000 28.96 17.54 37.65 4.34
2861 2906 1.143684 ACAATGCATAGCCCTAGGGTG 59.856 52.381 28.96 19.89 37.65 4.61
2862 2907 1.421268 CAATGCATAGCCCTAGGGTGA 59.579 52.381 28.96 17.32 37.65 4.02
2863 2908 2.040813 CAATGCATAGCCCTAGGGTGAT 59.959 50.000 28.96 18.79 37.65 3.06
2864 2909 1.059098 TGCATAGCCCTAGGGTGATG 58.941 55.000 28.96 28.13 37.65 3.07
2865 2910 0.322008 GCATAGCCCTAGGGTGATGC 60.322 60.000 34.54 34.54 43.10 3.91
2866 2911 0.326264 CATAGCCCTAGGGTGATGCC 59.674 60.000 28.96 11.17 37.65 4.40
2867 2912 0.194587 ATAGCCCTAGGGTGATGCCT 59.805 55.000 28.96 17.85 37.65 4.75
2869 2914 3.142393 CCCTAGGGTGATGCCTCG 58.858 66.667 20.88 0.00 37.43 4.63
2870 2915 2.423446 CCTAGGGTGATGCCTCGC 59.577 66.667 0.00 0.00 37.43 5.03
2880 2925 2.588989 TGCCTCGCATGCCATGTA 59.411 55.556 13.15 0.00 31.71 2.29
2881 2926 1.819208 TGCCTCGCATGCCATGTAC 60.819 57.895 13.15 0.00 31.71 2.90
2882 2927 1.524621 GCCTCGCATGCCATGTACT 60.525 57.895 13.15 0.00 0.00 2.73
2883 2928 1.097547 GCCTCGCATGCCATGTACTT 61.098 55.000 13.15 0.00 0.00 2.24
2884 2929 0.940126 CCTCGCATGCCATGTACTTC 59.060 55.000 13.15 0.00 0.00 3.01
2885 2930 1.655484 CTCGCATGCCATGTACTTCA 58.345 50.000 13.15 0.00 0.00 3.02
2888 2933 1.265095 CGCATGCCATGTACTTCATCC 59.735 52.381 13.15 0.00 34.09 3.51
2889 2934 1.265095 GCATGCCATGTACTTCATCCG 59.735 52.381 6.36 0.00 34.09 4.18
2890 2935 2.837498 CATGCCATGTACTTCATCCGA 58.163 47.619 0.00 0.00 34.09 4.55
2892 2937 3.111853 TGCCATGTACTTCATCCGATC 57.888 47.619 0.00 0.00 34.09 3.69
2893 2938 2.224281 TGCCATGTACTTCATCCGATCC 60.224 50.000 0.00 0.00 34.09 3.36
2894 2939 2.224281 GCCATGTACTTCATCCGATCCA 60.224 50.000 0.00 0.00 34.09 3.41
2895 2940 3.744214 GCCATGTACTTCATCCGATCCAA 60.744 47.826 0.00 0.00 34.09 3.53
2896 2941 4.450976 CCATGTACTTCATCCGATCCAAA 58.549 43.478 0.00 0.00 34.09 3.28
2898 2943 5.532406 CCATGTACTTCATCCGATCCAAAAT 59.468 40.000 0.00 0.00 34.09 1.82
2900 2945 7.095060 CCATGTACTTCATCCGATCCAAAATAG 60.095 40.741 0.00 0.00 34.09 1.73
2901 2946 7.119709 TGTACTTCATCCGATCCAAAATAGA 57.880 36.000 0.00 0.00 0.00 1.98
2902 2947 7.735917 TGTACTTCATCCGATCCAAAATAGAT 58.264 34.615 0.00 0.00 0.00 1.98
2903 2948 7.657354 TGTACTTCATCCGATCCAAAATAGATG 59.343 37.037 0.00 0.00 33.92 2.90
2905 2950 6.708054 ACTTCATCCGATCCAAAATAGATGAC 59.292 38.462 0.00 0.00 39.69 3.06
2907 2952 6.459066 TCATCCGATCCAAAATAGATGACTC 58.541 40.000 0.00 0.00 36.20 3.36
2908 2953 5.869649 TCCGATCCAAAATAGATGACTCA 57.130 39.130 0.00 0.00 0.00 3.41
2909 2954 6.233905 TCCGATCCAAAATAGATGACTCAA 57.766 37.500 0.00 0.00 0.00 3.02
2911 2956 6.051717 CCGATCCAAAATAGATGACTCAACT 58.948 40.000 0.00 0.00 0.00 3.16
2912 2957 6.540189 CCGATCCAAAATAGATGACTCAACTT 59.460 38.462 0.00 0.00 0.00 2.66
2913 2958 7.066284 CCGATCCAAAATAGATGACTCAACTTT 59.934 37.037 0.00 0.00 0.00 2.66
2914 2959 7.907045 CGATCCAAAATAGATGACTCAACTTTG 59.093 37.037 0.00 0.00 0.00 2.77
2915 2960 8.641498 ATCCAAAATAGATGACTCAACTTTGT 57.359 30.769 0.00 0.00 0.00 2.83
2917 2962 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
2918 2963 8.783093 CCAAAATAGATGACTCAACTTTGTACA 58.217 33.333 0.00 0.00 0.00 2.90
2931 2976 2.884663 TTGTACAAAGTTATGCCGCG 57.115 45.000 5.64 0.00 0.00 6.46
2932 2977 1.798283 TGTACAAAGTTATGCCGCGT 58.202 45.000 4.92 0.00 0.00 6.01
2933 2978 2.144730 TGTACAAAGTTATGCCGCGTT 58.855 42.857 4.92 0.00 0.00 4.84
2934 2979 2.158058 TGTACAAAGTTATGCCGCGTTC 59.842 45.455 4.92 0.00 0.00 3.95
2935 2980 0.165079 ACAAAGTTATGCCGCGTTCG 59.835 50.000 4.92 0.00 0.00 3.95
2945 2990 3.336566 CGCGTTCGGTTTCCCTTT 58.663 55.556 0.00 0.00 0.00 3.11
2946 2991 1.082366 CGCGTTCGGTTTCCCTTTG 60.082 57.895 0.00 0.00 0.00 2.77
2947 2992 1.371267 GCGTTCGGTTTCCCTTTGC 60.371 57.895 0.00 0.00 0.00 3.68
2948 2993 1.792118 GCGTTCGGTTTCCCTTTGCT 61.792 55.000 0.00 0.00 0.00 3.91
2949 2994 0.237498 CGTTCGGTTTCCCTTTGCTC 59.763 55.000 0.00 0.00 0.00 4.26
2950 2995 0.596577 GTTCGGTTTCCCTTTGCTCC 59.403 55.000 0.00 0.00 0.00 4.70
2951 2996 0.183971 TTCGGTTTCCCTTTGCTCCA 59.816 50.000 0.00 0.00 0.00 3.86
2952 2997 0.404040 TCGGTTTCCCTTTGCTCCAT 59.596 50.000 0.00 0.00 0.00 3.41
2953 2998 0.527565 CGGTTTCCCTTTGCTCCATG 59.472 55.000 0.00 0.00 0.00 3.66
2954 2999 0.897621 GGTTTCCCTTTGCTCCATGG 59.102 55.000 4.97 4.97 0.00 3.66
2955 3000 0.247460 GTTTCCCTTTGCTCCATGGC 59.753 55.000 6.96 0.00 0.00 4.40
2956 3001 0.114954 TTTCCCTTTGCTCCATGGCT 59.885 50.000 6.96 0.00 0.00 4.75
2957 3002 0.323725 TTCCCTTTGCTCCATGGCTC 60.324 55.000 6.96 1.05 0.00 4.70
2958 3003 1.755783 CCCTTTGCTCCATGGCTCC 60.756 63.158 6.96 0.00 0.00 4.70
2959 3004 2.117156 CCTTTGCTCCATGGCTCCG 61.117 63.158 6.96 0.00 0.00 4.63
2960 3005 2.751436 TTTGCTCCATGGCTCCGC 60.751 61.111 6.96 7.51 0.00 5.54
2961 3006 3.272364 TTTGCTCCATGGCTCCGCT 62.272 57.895 6.96 0.00 0.00 5.52
2962 3007 3.687321 TTGCTCCATGGCTCCGCTC 62.687 63.158 6.96 0.00 0.00 5.03
2963 3008 4.925861 GCTCCATGGCTCCGCTCC 62.926 72.222 6.96 0.00 0.00 4.70
2964 3009 4.247380 CTCCATGGCTCCGCTCCC 62.247 72.222 6.96 0.00 0.00 4.30
2976 3021 3.459063 GCTCCCGGAGCGGTAGTT 61.459 66.667 23.58 0.00 45.85 2.24
2977 3022 2.123428 GCTCCCGGAGCGGTAGTTA 61.123 63.158 23.58 0.00 45.85 2.24
2978 3023 1.669999 GCTCCCGGAGCGGTAGTTAA 61.670 60.000 23.58 0.00 45.85 2.01
2979 3024 0.819582 CTCCCGGAGCGGTAGTTAAA 59.180 55.000 0.73 0.00 46.80 1.52
2980 3025 1.205417 CTCCCGGAGCGGTAGTTAAAA 59.795 52.381 0.73 0.00 46.80 1.52
2981 3026 1.832998 TCCCGGAGCGGTAGTTAAAAT 59.167 47.619 0.73 0.00 46.80 1.82
2982 3027 3.030291 TCCCGGAGCGGTAGTTAAAATA 58.970 45.455 0.73 0.00 46.80 1.40
2983 3028 3.450457 TCCCGGAGCGGTAGTTAAAATAA 59.550 43.478 0.73 0.00 46.80 1.40
2984 3029 4.101430 TCCCGGAGCGGTAGTTAAAATAAT 59.899 41.667 0.73 0.00 46.80 1.28
2985 3030 4.818005 CCCGGAGCGGTAGTTAAAATAATT 59.182 41.667 0.73 0.00 46.80 1.40
2986 3031 5.049886 CCCGGAGCGGTAGTTAAAATAATTC 60.050 44.000 0.73 0.00 46.80 2.17
2987 3032 5.756833 CCGGAGCGGTAGTTAAAATAATTCT 59.243 40.000 0.00 0.00 42.73 2.40
2988 3033 6.925165 CCGGAGCGGTAGTTAAAATAATTCTA 59.075 38.462 0.00 0.00 42.73 2.10
2989 3034 7.115947 CCGGAGCGGTAGTTAAAATAATTCTAG 59.884 40.741 0.00 0.00 42.73 2.43
2990 3035 7.864379 CGGAGCGGTAGTTAAAATAATTCTAGA 59.136 37.037 0.00 0.00 0.00 2.43
2991 3036 9.538508 GGAGCGGTAGTTAAAATAATTCTAGAA 57.461 33.333 7.82 7.82 0.00 2.10
3007 3052 5.862924 TCTAGAATTTGAAGAAGTTGGCG 57.137 39.130 0.00 0.00 0.00 5.69
3008 3053 3.923017 AGAATTTGAAGAAGTTGGCGG 57.077 42.857 0.00 0.00 0.00 6.13
3009 3054 2.558359 AGAATTTGAAGAAGTTGGCGGG 59.442 45.455 0.00 0.00 0.00 6.13
3010 3055 0.603065 ATTTGAAGAAGTTGGCGGGC 59.397 50.000 0.00 0.00 0.00 6.13
3011 3056 0.467290 TTTGAAGAAGTTGGCGGGCT 60.467 50.000 2.38 0.00 0.00 5.19
3012 3057 1.172180 TTGAAGAAGTTGGCGGGCTG 61.172 55.000 2.38 0.00 0.00 4.85
3013 3058 2.982744 GAAGAAGTTGGCGGGCTGC 61.983 63.158 10.59 10.59 45.38 5.25
3027 3072 3.726517 CTGCCGAACGTGCCCTTG 61.727 66.667 0.00 0.00 0.00 3.61
3030 3075 2.344500 CCGAACGTGCCCTTGGTA 59.656 61.111 0.00 0.00 0.00 3.25
3031 3076 2.030958 CCGAACGTGCCCTTGGTAC 61.031 63.158 0.00 0.00 34.98 3.34
3032 3077 1.301087 CGAACGTGCCCTTGGTACA 60.301 57.895 0.00 0.00 38.20 2.90
3051 3096 8.918202 TGGTACAAAGTTGAGTCATCTATTTT 57.082 30.769 4.14 0.00 31.92 1.82
3052 3097 8.783093 TGGTACAAAGTTGAGTCATCTATTTTG 58.217 33.333 4.14 8.00 40.82 2.44
3053 3098 8.237267 GGTACAAAGTTGAGTCATCTATTTTGG 58.763 37.037 14.35 0.00 40.00 3.28
3054 3099 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
3055 3100 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
3056 3101 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
3057 3102 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
3058 3103 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
3059 3104 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
3060 3105 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
3061 3106 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
3062 3107 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3063 3108 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3064 3109 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3065 3110 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
3066 3111 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
3067 3112 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
3068 3113 2.314071 TTTGGAACGGAGGGAGTAGA 57.686 50.000 0.00 0.00 0.00 2.59
3069 3114 2.314071 TTGGAACGGAGGGAGTAGAA 57.686 50.000 0.00 0.00 0.00 2.10
3070 3115 2.544844 TGGAACGGAGGGAGTAGAAT 57.455 50.000 0.00 0.00 0.00 2.40
3071 3116 2.108168 TGGAACGGAGGGAGTAGAATG 58.892 52.381 0.00 0.00 0.00 2.67
3072 3117 2.108970 GGAACGGAGGGAGTAGAATGT 58.891 52.381 0.00 0.00 0.00 2.71
3073 3118 2.500504 GGAACGGAGGGAGTAGAATGTT 59.499 50.000 0.00 0.00 0.00 2.71
3074 3119 3.430513 GGAACGGAGGGAGTAGAATGTTC 60.431 52.174 0.00 0.00 35.07 3.18
3075 3120 1.749634 ACGGAGGGAGTAGAATGTTCG 59.250 52.381 0.00 0.00 0.00 3.95
3076 3121 1.067212 CGGAGGGAGTAGAATGTTCGG 59.933 57.143 0.00 0.00 0.00 4.30
3077 3122 2.385803 GGAGGGAGTAGAATGTTCGGA 58.614 52.381 0.00 0.00 0.00 4.55
3078 3123 2.966516 GGAGGGAGTAGAATGTTCGGAT 59.033 50.000 0.00 0.00 0.00 4.18
3079 3124 4.150359 GGAGGGAGTAGAATGTTCGGATA 58.850 47.826 0.00 0.00 0.00 2.59
3080 3125 4.218852 GGAGGGAGTAGAATGTTCGGATAG 59.781 50.000 0.00 0.00 0.00 2.08
3081 3126 4.153411 AGGGAGTAGAATGTTCGGATAGG 58.847 47.826 0.00 0.00 0.00 2.57
3082 3127 3.258622 GGGAGTAGAATGTTCGGATAGGG 59.741 52.174 0.00 0.00 0.00 3.53
3083 3128 4.150359 GGAGTAGAATGTTCGGATAGGGA 58.850 47.826 0.00 0.00 0.00 4.20
3084 3129 4.587684 GGAGTAGAATGTTCGGATAGGGAA 59.412 45.833 0.00 0.00 0.00 3.97
3085 3130 5.279056 GGAGTAGAATGTTCGGATAGGGAAG 60.279 48.000 0.00 0.00 0.00 3.46
3086 3131 3.477210 AGAATGTTCGGATAGGGAAGC 57.523 47.619 0.00 0.00 0.00 3.86
3087 3132 2.135933 GAATGTTCGGATAGGGAAGCG 58.864 52.381 0.00 0.00 0.00 4.68
3088 3133 0.393077 ATGTTCGGATAGGGAAGCGG 59.607 55.000 0.00 0.00 0.00 5.52
3089 3134 1.069258 GTTCGGATAGGGAAGCGGG 59.931 63.158 0.00 0.00 0.00 6.13
3090 3135 1.075822 TTCGGATAGGGAAGCGGGA 60.076 57.895 0.00 0.00 0.00 5.14
3091 3136 0.471211 TTCGGATAGGGAAGCGGGAT 60.471 55.000 0.00 0.00 0.00 3.85
3092 3137 0.471211 TCGGATAGGGAAGCGGGATT 60.471 55.000 0.00 0.00 0.00 3.01
3093 3138 0.037232 CGGATAGGGAAGCGGGATTC 60.037 60.000 0.00 0.00 0.00 2.52
3094 3139 1.353091 GGATAGGGAAGCGGGATTCT 58.647 55.000 0.00 0.00 0.00 2.40
3095 3140 1.276705 GGATAGGGAAGCGGGATTCTC 59.723 57.143 0.00 0.00 0.00 2.87
3096 3141 2.252714 GATAGGGAAGCGGGATTCTCT 58.747 52.381 4.32 4.32 42.68 3.10
3097 3142 1.414158 TAGGGAAGCGGGATTCTCTG 58.586 55.000 9.21 0.00 40.30 3.35
3098 3143 1.524849 GGGAAGCGGGATTCTCTGC 60.525 63.158 0.00 0.00 39.22 4.26
3099 3144 1.221840 GGAAGCGGGATTCTCTGCA 59.778 57.895 8.17 0.00 41.26 4.41
3100 3145 0.813210 GGAAGCGGGATTCTCTGCAG 60.813 60.000 7.63 7.63 41.26 4.41
3101 3146 0.813210 GAAGCGGGATTCTCTGCAGG 60.813 60.000 15.13 4.77 41.26 4.85
3102 3147 1.267574 AAGCGGGATTCTCTGCAGGA 61.268 55.000 15.13 7.36 41.26 3.86
3103 3148 1.227497 GCGGGATTCTCTGCAGGAG 60.227 63.158 15.13 10.18 43.12 3.69
3109 3154 2.441051 TCTCTGCAGGAGACGGGT 59.559 61.111 15.13 0.00 45.20 5.28
3110 3155 1.979155 TCTCTGCAGGAGACGGGTG 60.979 63.158 15.13 0.00 45.20 4.61
3111 3156 3.655810 CTCTGCAGGAGACGGGTGC 62.656 68.421 15.13 0.00 44.45 5.01
3112 3157 3.699894 CTGCAGGAGACGGGTGCT 61.700 66.667 5.57 0.00 38.09 4.40
3113 3158 3.241530 TGCAGGAGACGGGTGCTT 61.242 61.111 0.00 0.00 38.09 3.91
3114 3159 2.743928 GCAGGAGACGGGTGCTTG 60.744 66.667 0.00 0.00 34.23 4.01
3115 3160 2.046892 CAGGAGACGGGTGCTTGG 60.047 66.667 0.00 0.00 0.00 3.61
3116 3161 2.203788 AGGAGACGGGTGCTTGGA 60.204 61.111 0.00 0.00 0.00 3.53
3117 3162 2.266055 GGAGACGGGTGCTTGGAG 59.734 66.667 0.00 0.00 0.00 3.86
3118 3163 2.283529 GGAGACGGGTGCTTGGAGA 61.284 63.158 0.00 0.00 0.00 3.71
3119 3164 1.216710 GAGACGGGTGCTTGGAGAG 59.783 63.158 0.00 0.00 0.00 3.20
3120 3165 1.228894 AGACGGGTGCTTGGAGAGA 60.229 57.895 0.00 0.00 0.00 3.10
3121 3166 0.832135 AGACGGGTGCTTGGAGAGAA 60.832 55.000 0.00 0.00 0.00 2.87
3122 3167 0.034896 GACGGGTGCTTGGAGAGAAA 59.965 55.000 0.00 0.00 0.00 2.52
3123 3168 0.472471 ACGGGTGCTTGGAGAGAAAA 59.528 50.000 0.00 0.00 0.00 2.29
3124 3169 1.133915 ACGGGTGCTTGGAGAGAAAAA 60.134 47.619 0.00 0.00 0.00 1.94
3144 3189 6.642707 AAAAAGTATGGTCCGATGTCAAAA 57.357 33.333 0.00 0.00 0.00 2.44
3145 3190 6.642707 AAAAGTATGGTCCGATGTCAAAAA 57.357 33.333 0.00 0.00 0.00 1.94
3146 3191 6.834168 AAAGTATGGTCCGATGTCAAAAAT 57.166 33.333 0.00 0.00 0.00 1.82
3147 3192 6.834168 AAGTATGGTCCGATGTCAAAAATT 57.166 33.333 0.00 0.00 0.00 1.82
3148 3193 7.931578 AAGTATGGTCCGATGTCAAAAATTA 57.068 32.000 0.00 0.00 0.00 1.40
3149 3194 7.931578 AGTATGGTCCGATGTCAAAAATTAA 57.068 32.000 0.00 0.00 0.00 1.40
3150 3195 8.343168 AGTATGGTCCGATGTCAAAAATTAAA 57.657 30.769 0.00 0.00 0.00 1.52
3151 3196 8.798402 AGTATGGTCCGATGTCAAAAATTAAAA 58.202 29.630 0.00 0.00 0.00 1.52
3152 3197 9.072294 GTATGGTCCGATGTCAAAAATTAAAAG 57.928 33.333 0.00 0.00 0.00 2.27
3153 3198 6.451393 TGGTCCGATGTCAAAAATTAAAAGG 58.549 36.000 0.00 0.00 0.00 3.11
3154 3199 5.867174 GGTCCGATGTCAAAAATTAAAAGGG 59.133 40.000 0.00 0.00 0.00 3.95
3155 3200 6.452242 GTCCGATGTCAAAAATTAAAAGGGT 58.548 36.000 0.00 0.00 0.00 4.34
3156 3201 6.926826 GTCCGATGTCAAAAATTAAAAGGGTT 59.073 34.615 0.00 0.00 0.00 4.11
3157 3202 6.926272 TCCGATGTCAAAAATTAAAAGGGTTG 59.074 34.615 0.00 0.00 0.00 3.77
3158 3203 6.926272 CCGATGTCAAAAATTAAAAGGGTTGA 59.074 34.615 0.00 0.00 0.00 3.18
3159 3204 7.439655 CCGATGTCAAAAATTAAAAGGGTTGAA 59.560 33.333 0.00 0.00 0.00 2.69
3160 3205 8.487176 CGATGTCAAAAATTAAAAGGGTTGAAG 58.513 33.333 0.00 0.00 0.00 3.02
3161 3206 9.325198 GATGTCAAAAATTAAAAGGGTTGAAGT 57.675 29.630 0.00 0.00 0.00 3.01
3188 3233 8.437360 AAAAATAGAGATGCATGTGTATTCGA 57.563 30.769 21.71 0.00 0.00 3.71
3189 3234 7.649370 AAATAGAGATGCATGTGTATTCGAG 57.351 36.000 21.71 0.00 0.00 4.04
3190 3235 4.662468 AGAGATGCATGTGTATTCGAGT 57.338 40.909 2.46 0.00 0.00 4.18
3191 3236 5.016051 AGAGATGCATGTGTATTCGAGTT 57.984 39.130 2.46 0.00 0.00 3.01
3192 3237 5.423015 AGAGATGCATGTGTATTCGAGTTT 58.577 37.500 2.46 0.00 0.00 2.66
3193 3238 5.877012 AGAGATGCATGTGTATTCGAGTTTT 59.123 36.000 2.46 0.00 0.00 2.43
3194 3239 6.372659 AGAGATGCATGTGTATTCGAGTTTTT 59.627 34.615 2.46 0.00 0.00 1.94
3195 3240 7.549134 AGAGATGCATGTGTATTCGAGTTTTTA 59.451 33.333 2.46 0.00 0.00 1.52
3196 3241 8.213518 AGATGCATGTGTATTCGAGTTTTTAT 57.786 30.769 2.46 0.00 0.00 1.40
3197 3242 8.677300 AGATGCATGTGTATTCGAGTTTTTATT 58.323 29.630 2.46 0.00 0.00 1.40
3198 3243 9.289303 GATGCATGTGTATTCGAGTTTTTATTT 57.711 29.630 2.46 0.00 0.00 1.40
3199 3244 9.638239 ATGCATGTGTATTCGAGTTTTTATTTT 57.362 25.926 0.00 0.00 0.00 1.82
3200 3245 9.123709 TGCATGTGTATTCGAGTTTTTATTTTC 57.876 29.630 0.00 0.00 0.00 2.29
3201 3246 9.341899 GCATGTGTATTCGAGTTTTTATTTTCT 57.658 29.630 0.00 0.00 0.00 2.52
3231 3276 8.998277 TTTAATGAGGTCTACTAGTGATAGCT 57.002 34.615 5.39 5.53 0.00 3.32
3232 3277 8.998277 TTAATGAGGTCTACTAGTGATAGCTT 57.002 34.615 5.39 0.00 0.00 3.74
3233 3278 6.892658 ATGAGGTCTACTAGTGATAGCTTG 57.107 41.667 5.39 0.00 0.00 4.01
3234 3279 5.756918 TGAGGTCTACTAGTGATAGCTTGT 58.243 41.667 5.39 0.00 0.00 3.16
3235 3280 6.896883 TGAGGTCTACTAGTGATAGCTTGTA 58.103 40.000 5.39 0.00 0.00 2.41
3236 3281 7.519057 TGAGGTCTACTAGTGATAGCTTGTAT 58.481 38.462 5.39 0.00 0.00 2.29
3237 3282 7.999545 TGAGGTCTACTAGTGATAGCTTGTATT 59.000 37.037 5.39 0.00 0.00 1.89
3238 3283 8.172352 AGGTCTACTAGTGATAGCTTGTATTG 57.828 38.462 5.39 0.00 0.00 1.90
3239 3284 7.999545 AGGTCTACTAGTGATAGCTTGTATTGA 59.000 37.037 5.39 0.00 0.00 2.57
3240 3285 8.293867 GGTCTACTAGTGATAGCTTGTATTGAG 58.706 40.741 5.39 0.00 0.00 3.02
3241 3286 8.293867 GTCTACTAGTGATAGCTTGTATTGAGG 58.706 40.741 5.39 0.00 0.00 3.86
3242 3287 8.218488 TCTACTAGTGATAGCTTGTATTGAGGA 58.782 37.037 5.39 0.00 0.00 3.71
3243 3288 7.283625 ACTAGTGATAGCTTGTATTGAGGAG 57.716 40.000 0.00 0.00 0.00 3.69
3244 3289 7.063593 ACTAGTGATAGCTTGTATTGAGGAGA 58.936 38.462 0.00 0.00 0.00 3.71
3245 3290 6.798427 AGTGATAGCTTGTATTGAGGAGAA 57.202 37.500 0.00 0.00 0.00 2.87
3246 3291 7.187824 AGTGATAGCTTGTATTGAGGAGAAA 57.812 36.000 0.00 0.00 0.00 2.52
3247 3292 7.624549 AGTGATAGCTTGTATTGAGGAGAAAA 58.375 34.615 0.00 0.00 0.00 2.29
3248 3293 8.103305 AGTGATAGCTTGTATTGAGGAGAAAAA 58.897 33.333 0.00 0.00 0.00 1.94
3286 3331 9.581099 AATGCCTTAAATTACTTTTTATCACGG 57.419 29.630 0.00 0.00 0.00 4.94
3287 3332 8.338072 TGCCTTAAATTACTTTTTATCACGGA 57.662 30.769 0.00 0.00 0.00 4.69
3288 3333 8.962679 TGCCTTAAATTACTTTTTATCACGGAT 58.037 29.630 0.00 0.00 0.00 4.18
3307 3352 5.537300 GGATATCTGTATCCGTATGCCAT 57.463 43.478 2.05 0.00 45.12 4.40
3308 3353 5.533482 GGATATCTGTATCCGTATGCCATC 58.467 45.833 2.05 0.00 45.12 3.51
3309 3354 5.069119 GGATATCTGTATCCGTATGCCATCA 59.931 44.000 2.05 0.00 45.12 3.07
3310 3355 6.239430 GGATATCTGTATCCGTATGCCATCAT 60.239 42.308 2.05 0.00 45.12 2.45
3311 3356 4.890158 TCTGTATCCGTATGCCATCATT 57.110 40.909 0.00 0.00 34.22 2.57
3312 3357 4.568956 TCTGTATCCGTATGCCATCATTG 58.431 43.478 0.00 0.00 34.22 2.82
3313 3358 4.040339 TCTGTATCCGTATGCCATCATTGT 59.960 41.667 0.00 0.00 34.22 2.71
3314 3359 5.245075 TCTGTATCCGTATGCCATCATTGTA 59.755 40.000 0.00 0.00 34.22 2.41
3315 3360 5.234752 TGTATCCGTATGCCATCATTGTAC 58.765 41.667 0.00 0.00 34.22 2.90
3316 3361 3.828875 TCCGTATGCCATCATTGTACA 57.171 42.857 0.00 0.00 34.22 2.90
3317 3362 4.350368 TCCGTATGCCATCATTGTACAT 57.650 40.909 0.00 0.00 34.22 2.29
3318 3363 4.064388 TCCGTATGCCATCATTGTACATG 58.936 43.478 0.00 0.00 34.22 3.21
3319 3364 3.365264 CCGTATGCCATCATTGTACATGC 60.365 47.826 0.00 0.00 34.22 4.06
3320 3365 3.365264 CGTATGCCATCATTGTACATGCC 60.365 47.826 0.00 0.00 34.22 4.40
3321 3366 1.401761 TGCCATCATTGTACATGCCC 58.598 50.000 0.00 0.00 0.00 5.36
3322 3367 1.063792 TGCCATCATTGTACATGCCCT 60.064 47.619 0.00 0.00 0.00 5.19
3323 3368 1.610522 GCCATCATTGTACATGCCCTC 59.389 52.381 0.00 0.00 0.00 4.30
3324 3369 2.750807 GCCATCATTGTACATGCCCTCT 60.751 50.000 0.00 0.00 0.00 3.69
3325 3370 2.882761 CCATCATTGTACATGCCCTCTG 59.117 50.000 0.00 0.00 0.00 3.35
3326 3371 3.434024 CCATCATTGTACATGCCCTCTGA 60.434 47.826 0.00 0.00 0.00 3.27
3327 3372 3.266510 TCATTGTACATGCCCTCTGAC 57.733 47.619 0.00 0.00 0.00 3.51
3328 3373 1.935873 CATTGTACATGCCCTCTGACG 59.064 52.381 0.00 0.00 0.00 4.35
3329 3374 0.249120 TTGTACATGCCCTCTGACGG 59.751 55.000 0.00 0.00 0.00 4.79
3330 3375 0.902984 TGTACATGCCCTCTGACGGT 60.903 55.000 0.00 0.00 0.00 4.83
3331 3376 0.179108 GTACATGCCCTCTGACGGTC 60.179 60.000 0.00 0.00 0.00 4.79
3332 3377 0.324368 TACATGCCCTCTGACGGTCT 60.324 55.000 9.88 0.00 0.00 3.85
3333 3378 0.324368 ACATGCCCTCTGACGGTCTA 60.324 55.000 9.88 0.00 0.00 2.59
3337 3382 0.386113 GCCCTCTGACGGTCTACATC 59.614 60.000 9.88 0.00 0.00 3.06
3356 3401 6.349973 ACATCTACAAGCGTCACATTTATG 57.650 37.500 0.00 0.00 0.00 1.90
3377 3428 1.675552 TGTGTCTCACGAGTCTGACA 58.324 50.000 10.88 0.00 37.14 3.58
3380 3431 1.874231 TGTCTCACGAGTCTGACAGTC 59.126 52.381 10.88 0.00 34.94 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
339 340 6.971726 ACATCCGTATGTAGTCCTTATTGA 57.028 37.500 0.00 0.00 44.66 2.57
391 392 7.115947 GCGGACTATATACGAAGCAAAATAAGT 59.884 37.037 0.00 0.00 0.00 2.24
394 395 6.448852 TGCGGACTATATACGAAGCAAAATA 58.551 36.000 0.00 0.00 0.00 1.40
409 410 8.918202 TTTTTAGATATTCCAATGCGGACTAT 57.082 30.769 0.00 0.00 46.36 2.12
426 427 7.648039 ACGTACTCTCTCCATCTTTTTAGAT 57.352 36.000 0.00 0.00 0.00 1.98
442 443 3.657634 TCTTGACAGACGTACGTACTCT 58.342 45.455 22.87 19.30 0.00 3.24
545 546 3.987220 GCAATGCAAACGAAACCAACTAT 59.013 39.130 0.00 0.00 0.00 2.12
547 548 2.159114 AGCAATGCAAACGAAACCAACT 60.159 40.909 8.35 0.00 0.00 3.16
561 562 2.054453 GGAGGGGTGGAAGCAATGC 61.054 63.158 0.00 0.00 34.77 3.56
592 593 1.092549 ACAAATCAATGGGAGGGGGT 58.907 50.000 0.00 0.00 0.00 4.95
642 643 1.330234 GTAGGGCCGGTTTGGAAAAA 58.670 50.000 1.90 0.00 42.00 1.94
655 656 1.340114 CCAGAAACAAGGAGGTAGGGC 60.340 57.143 0.00 0.00 0.00 5.19
860 869 8.655901 TCATAATGGGTGAAATATAGCACAGTA 58.344 33.333 9.32 0.00 36.76 2.74
953 965 9.013229 TCAGCAAATGAGTTAACACTAATGATT 57.987 29.630 8.61 0.00 31.22 2.57
954 966 8.565896 TCAGCAAATGAGTTAACACTAATGAT 57.434 30.769 8.61 0.00 31.22 2.45
955 967 7.977789 TCAGCAAATGAGTTAACACTAATGA 57.022 32.000 8.61 0.00 31.22 2.57
957 969 9.236006 AGATTCAGCAAATGAGTTAACACTAAT 57.764 29.630 8.61 0.00 39.68 1.73
958 970 8.506437 CAGATTCAGCAAATGAGTTAACACTAA 58.494 33.333 8.61 0.00 39.68 2.24
959 971 7.661437 ACAGATTCAGCAAATGAGTTAACACTA 59.339 33.333 8.61 0.00 39.68 2.74
960 972 6.488006 ACAGATTCAGCAAATGAGTTAACACT 59.512 34.615 8.61 0.00 39.68 3.55
961 973 6.672147 ACAGATTCAGCAAATGAGTTAACAC 58.328 36.000 8.61 1.71 39.68 3.32
1308 1332 5.449177 GACTTCTTCAGTGGTTGGAAACAAG 60.449 44.000 0.00 0.00 43.96 3.16
1321 1345 2.879026 GGCGGAAAAAGACTTCTTCAGT 59.121 45.455 3.75 0.00 39.07 3.41
1333 1357 1.684450 GGTTCCTCAAAGGCGGAAAAA 59.316 47.619 0.00 0.00 40.71 1.94
1335 1359 0.183971 TGGTTCCTCAAAGGCGGAAA 59.816 50.000 0.00 0.00 40.71 3.13
1489 1517 7.311364 TGAGTGTAAAGTGTTTGTAAAGACC 57.689 36.000 1.54 0.00 33.06 3.85
1590 1618 6.099341 AGAAACAAAATAATGACATTCCGCC 58.901 36.000 3.36 0.00 0.00 6.13
1873 1901 4.384846 GCCTAACGACGTGTGATATATTGG 59.615 45.833 0.00 0.00 0.00 3.16
1888 1916 6.767524 ATTTCCATGTTTATTGCCTAACGA 57.232 33.333 0.00 0.00 0.00 3.85
1930 1958 3.882444 AGCAGCAGCATAGATTTCTGAA 58.118 40.909 3.17 0.00 45.49 3.02
1932 1960 7.465173 CATTATAGCAGCAGCATAGATTTCTG 58.535 38.462 3.17 0.00 45.49 3.02
2284 2320 1.604593 GGCAGTCCACAGGCATGTT 60.605 57.895 0.00 0.00 37.65 2.71
2515 2551 5.677567 TCATCAGATACACATGAATGCTGT 58.322 37.500 0.00 0.00 0.00 4.40
2517 2553 6.296803 ACATCATCAGATACACATGAATGCT 58.703 36.000 0.00 0.00 31.88 3.79
2624 2667 6.673154 AACAACCTATCAACTAATAACGGC 57.327 37.500 0.00 0.00 0.00 5.68
2627 2670 8.803397 AGGGAAACAACCTATCAACTAATAAC 57.197 34.615 0.00 0.00 36.32 1.89
2632 2675 7.743116 TCATAGGGAAACAACCTATCAACTA 57.257 36.000 1.16 0.00 45.85 2.24
2669 2712 3.594134 CTTTGAACAGGCAAACCAACAA 58.406 40.909 0.00 0.00 39.06 2.83
2716 2759 5.404946 CACTGCCATAAAAATTGTCTGAGG 58.595 41.667 0.00 0.00 0.00 3.86
2720 2763 3.055891 GCCCACTGCCATAAAAATTGTCT 60.056 43.478 0.00 0.00 0.00 3.41
2835 2880 5.189736 CCCTAGGGCTATGCATTGTATAGAA 59.810 44.000 16.90 6.29 31.26 2.10
2836 2881 4.716784 CCCTAGGGCTATGCATTGTATAGA 59.283 45.833 16.90 4.01 31.26 1.98
2837 2882 4.471386 ACCCTAGGGCTATGCATTGTATAG 59.529 45.833 28.88 15.17 39.32 1.31
2838 2883 4.225042 CACCCTAGGGCTATGCATTGTATA 59.775 45.833 28.88 0.00 39.32 1.47
2840 2885 2.371841 CACCCTAGGGCTATGCATTGTA 59.628 50.000 28.88 0.00 39.32 2.41
2842 2887 1.421268 TCACCCTAGGGCTATGCATTG 59.579 52.381 28.88 15.66 39.32 2.82
2843 2888 1.819753 TCACCCTAGGGCTATGCATT 58.180 50.000 28.88 2.02 39.32 3.56
2844 2889 1.632409 CATCACCCTAGGGCTATGCAT 59.368 52.381 28.88 3.79 39.32 3.96
2845 2890 1.059098 CATCACCCTAGGGCTATGCA 58.941 55.000 28.88 9.23 39.32 3.96
2846 2891 0.322008 GCATCACCCTAGGGCTATGC 60.322 60.000 34.95 34.95 44.06 3.14
2847 2892 0.326264 GGCATCACCCTAGGGCTATG 59.674 60.000 28.88 28.17 39.32 2.23
2848 2893 0.194587 AGGCATCACCCTAGGGCTAT 59.805 55.000 28.88 18.18 40.58 2.97
2849 2894 0.471971 GAGGCATCACCCTAGGGCTA 60.472 60.000 28.88 16.57 40.58 3.93
2851 2896 2.832498 GAGGCATCACCCTAGGGC 59.168 66.667 28.88 13.14 40.58 5.19
2852 2897 3.142393 CGAGGCATCACCCTAGGG 58.858 66.667 27.36 27.36 40.58 3.53
2853 2898 2.423446 GCGAGGCATCACCCTAGG 59.577 66.667 0.06 0.06 40.58 3.02
2864 2909 1.097547 AAGTACATGGCATGCGAGGC 61.098 55.000 26.70 12.29 0.00 4.70
2865 2910 0.940126 GAAGTACATGGCATGCGAGG 59.060 55.000 26.70 13.00 0.00 4.63
2866 2911 1.655484 TGAAGTACATGGCATGCGAG 58.345 50.000 26.70 6.35 0.00 5.03
2867 2912 2.212652 GATGAAGTACATGGCATGCGA 58.787 47.619 26.70 12.78 39.56 5.10
2869 2914 1.265095 CGGATGAAGTACATGGCATGC 59.735 52.381 26.70 9.90 39.56 4.06
2870 2915 2.837498 TCGGATGAAGTACATGGCATG 58.163 47.619 25.31 25.31 39.56 4.06
2873 2918 2.224281 TGGATCGGATGAAGTACATGGC 60.224 50.000 0.00 0.00 39.56 4.40
2875 2920 6.624352 ATTTTGGATCGGATGAAGTACATG 57.376 37.500 0.00 0.00 39.56 3.21
2876 2921 7.735917 TCTATTTTGGATCGGATGAAGTACAT 58.264 34.615 0.00 0.00 42.47 2.29
2877 2922 7.119709 TCTATTTTGGATCGGATGAAGTACA 57.880 36.000 0.00 0.00 0.00 2.90
2880 2925 6.708054 GTCATCTATTTTGGATCGGATGAAGT 59.292 38.462 0.00 0.00 40.36 3.01
2881 2926 6.933521 AGTCATCTATTTTGGATCGGATGAAG 59.066 38.462 0.00 0.00 40.36 3.02
2882 2927 6.830912 AGTCATCTATTTTGGATCGGATGAA 58.169 36.000 0.00 0.00 40.36 2.57
2883 2928 6.041979 TGAGTCATCTATTTTGGATCGGATGA 59.958 38.462 0.00 0.00 37.71 2.92
2884 2929 6.226052 TGAGTCATCTATTTTGGATCGGATG 58.774 40.000 0.00 0.00 33.92 3.51
2885 2930 6.425210 TGAGTCATCTATTTTGGATCGGAT 57.575 37.500 0.00 0.00 0.00 4.18
2888 2933 7.545362 AAGTTGAGTCATCTATTTTGGATCG 57.455 36.000 4.14 0.00 0.00 3.69
2889 2934 8.734386 ACAAAGTTGAGTCATCTATTTTGGATC 58.266 33.333 14.35 0.00 40.00 3.36
2890 2935 8.641498 ACAAAGTTGAGTCATCTATTTTGGAT 57.359 30.769 14.35 0.00 40.00 3.41
2892 2937 8.783093 TGTACAAAGTTGAGTCATCTATTTTGG 58.217 33.333 14.35 0.00 40.00 3.28
2911 2956 2.548904 ACGCGGCATAACTTTGTACAAA 59.451 40.909 19.53 19.53 0.00 2.83
2912 2957 2.144730 ACGCGGCATAACTTTGTACAA 58.855 42.857 12.47 3.59 0.00 2.41
2913 2958 1.798283 ACGCGGCATAACTTTGTACA 58.202 45.000 12.47 0.00 0.00 2.90
2914 2959 2.765918 GAACGCGGCATAACTTTGTAC 58.234 47.619 12.47 0.00 0.00 2.90
2915 2960 1.390803 CGAACGCGGCATAACTTTGTA 59.609 47.619 12.47 0.00 0.00 2.41
2917 2962 2.911198 CGAACGCGGCATAACTTTG 58.089 52.632 12.47 0.00 0.00 2.77
2936 2981 0.247460 GCCATGGAGCAAAGGGAAAC 59.753 55.000 18.40 0.00 0.00 2.78
2937 2982 0.114954 AGCCATGGAGCAAAGGGAAA 59.885 50.000 18.40 0.00 34.23 3.13
2938 2983 0.323725 GAGCCATGGAGCAAAGGGAA 60.324 55.000 18.40 0.00 34.23 3.97
2939 2984 1.304282 GAGCCATGGAGCAAAGGGA 59.696 57.895 18.40 0.00 34.23 4.20
2940 2985 1.755783 GGAGCCATGGAGCAAAGGG 60.756 63.158 18.40 0.00 34.23 3.95
2941 2986 2.117156 CGGAGCCATGGAGCAAAGG 61.117 63.158 18.40 0.00 34.23 3.11
2942 2987 3.506108 CGGAGCCATGGAGCAAAG 58.494 61.111 18.40 0.00 34.23 2.77
2964 3009 6.839820 AGAATTATTTTAACTACCGCTCCG 57.160 37.500 0.00 0.00 0.00 4.63
2965 3010 9.538508 TTCTAGAATTATTTTAACTACCGCTCC 57.461 33.333 0.00 0.00 0.00 4.70
2981 3026 8.450964 CGCCAACTTCTTCAAATTCTAGAATTA 58.549 33.333 26.90 12.82 39.88 1.40
2982 3027 7.308435 CGCCAACTTCTTCAAATTCTAGAATT 58.692 34.615 22.43 22.43 42.35 2.17
2983 3028 6.127897 CCGCCAACTTCTTCAAATTCTAGAAT 60.128 38.462 12.37 12.37 0.00 2.40
2984 3029 5.181245 CCGCCAACTTCTTCAAATTCTAGAA 59.819 40.000 7.82 7.82 0.00 2.10
2985 3030 4.695455 CCGCCAACTTCTTCAAATTCTAGA 59.305 41.667 0.00 0.00 0.00 2.43
2986 3031 4.142600 CCCGCCAACTTCTTCAAATTCTAG 60.143 45.833 0.00 0.00 0.00 2.43
2987 3032 3.756434 CCCGCCAACTTCTTCAAATTCTA 59.244 43.478 0.00 0.00 0.00 2.10
2988 3033 2.558359 CCCGCCAACTTCTTCAAATTCT 59.442 45.455 0.00 0.00 0.00 2.40
2989 3034 2.926586 GCCCGCCAACTTCTTCAAATTC 60.927 50.000 0.00 0.00 0.00 2.17
2990 3035 1.000843 GCCCGCCAACTTCTTCAAATT 59.999 47.619 0.00 0.00 0.00 1.82
2991 3036 0.603065 GCCCGCCAACTTCTTCAAAT 59.397 50.000 0.00 0.00 0.00 2.32
2992 3037 0.467290 AGCCCGCCAACTTCTTCAAA 60.467 50.000 0.00 0.00 0.00 2.69
2993 3038 1.150536 AGCCCGCCAACTTCTTCAA 59.849 52.632 0.00 0.00 0.00 2.69
2994 3039 1.600636 CAGCCCGCCAACTTCTTCA 60.601 57.895 0.00 0.00 0.00 3.02
2995 3040 2.982744 GCAGCCCGCCAACTTCTTC 61.983 63.158 0.00 0.00 32.94 2.87
2996 3041 2.985847 GCAGCCCGCCAACTTCTT 60.986 61.111 0.00 0.00 32.94 2.52
3010 3055 3.726517 CAAGGGCACGTTCGGCAG 61.727 66.667 1.89 0.00 32.45 4.85
3012 3057 3.887335 TACCAAGGGCACGTTCGGC 62.887 63.158 0.00 0.00 32.45 5.54
3013 3058 2.030958 GTACCAAGGGCACGTTCGG 61.031 63.158 0.00 0.00 32.45 4.30
3014 3059 0.881159 TTGTACCAAGGGCACGTTCG 60.881 55.000 0.00 0.00 32.45 3.95
3015 3060 1.265905 CTTTGTACCAAGGGCACGTTC 59.734 52.381 0.00 0.00 32.45 3.95
3016 3061 1.314730 CTTTGTACCAAGGGCACGTT 58.685 50.000 0.00 0.00 36.62 3.99
3017 3062 0.181824 ACTTTGTACCAAGGGCACGT 59.818 50.000 11.10 0.00 0.00 4.49
3018 3063 1.001815 CAACTTTGTACCAAGGGCACG 60.002 52.381 11.10 0.00 0.00 5.34
3019 3064 2.293399 CTCAACTTTGTACCAAGGGCAC 59.707 50.000 11.10 0.00 0.00 5.01
3020 3065 2.092103 ACTCAACTTTGTACCAAGGGCA 60.092 45.455 11.10 0.00 0.00 5.36
3021 3066 2.552743 GACTCAACTTTGTACCAAGGGC 59.447 50.000 11.10 0.00 0.00 5.19
3022 3067 3.815809 TGACTCAACTTTGTACCAAGGG 58.184 45.455 11.10 3.54 0.00 3.95
3023 3068 5.308825 AGATGACTCAACTTTGTACCAAGG 58.691 41.667 11.10 0.00 0.00 3.61
3024 3069 8.553459 AATAGATGACTCAACTTTGTACCAAG 57.447 34.615 5.19 5.19 0.00 3.61
3025 3070 8.918202 AAATAGATGACTCAACTTTGTACCAA 57.082 30.769 0.00 0.00 0.00 3.67
3026 3071 8.783093 CAAAATAGATGACTCAACTTTGTACCA 58.217 33.333 0.00 0.00 0.00 3.25
3027 3072 8.237267 CCAAAATAGATGACTCAACTTTGTACC 58.763 37.037 0.00 0.00 0.00 3.34
3028 3073 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
3029 3074 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
3030 3075 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
3031 3076 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
3032 3077 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
3033 3078 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3034 3079 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
3035 3080 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
3036 3081 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3037 3082 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3038 3083 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3039 3084 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
3040 3085 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3041 3086 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3042 3087 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3043 3088 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3044 3089 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3045 3090 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3046 3091 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
3047 3092 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
3048 3093 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
3049 3094 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
3050 3095 2.314071 TTCTACTCCCTCCGTTCCAA 57.686 50.000 0.00 0.00 0.00 3.53
3051 3096 2.108168 CATTCTACTCCCTCCGTTCCA 58.892 52.381 0.00 0.00 0.00 3.53
3052 3097 2.108970 ACATTCTACTCCCTCCGTTCC 58.891 52.381 0.00 0.00 0.00 3.62
3053 3098 3.734293 CGAACATTCTACTCCCTCCGTTC 60.734 52.174 0.00 0.00 0.00 3.95
3054 3099 2.165845 CGAACATTCTACTCCCTCCGTT 59.834 50.000 0.00 0.00 0.00 4.44
3055 3100 1.749634 CGAACATTCTACTCCCTCCGT 59.250 52.381 0.00 0.00 0.00 4.69
3056 3101 1.067212 CCGAACATTCTACTCCCTCCG 59.933 57.143 0.00 0.00 0.00 4.63
3057 3102 2.385803 TCCGAACATTCTACTCCCTCC 58.614 52.381 0.00 0.00 0.00 4.30
3058 3103 4.218852 CCTATCCGAACATTCTACTCCCTC 59.781 50.000 0.00 0.00 0.00 4.30
3059 3104 4.153411 CCTATCCGAACATTCTACTCCCT 58.847 47.826 0.00 0.00 0.00 4.20
3060 3105 3.258622 CCCTATCCGAACATTCTACTCCC 59.741 52.174 0.00 0.00 0.00 4.30
3061 3106 4.150359 TCCCTATCCGAACATTCTACTCC 58.850 47.826 0.00 0.00 0.00 3.85
3062 3107 5.774630 CTTCCCTATCCGAACATTCTACTC 58.225 45.833 0.00 0.00 0.00 2.59
3063 3108 4.039366 GCTTCCCTATCCGAACATTCTACT 59.961 45.833 0.00 0.00 0.00 2.57
3064 3109 4.308265 GCTTCCCTATCCGAACATTCTAC 58.692 47.826 0.00 0.00 0.00 2.59
3065 3110 3.005472 CGCTTCCCTATCCGAACATTCTA 59.995 47.826 0.00 0.00 0.00 2.10
3066 3111 2.224066 CGCTTCCCTATCCGAACATTCT 60.224 50.000 0.00 0.00 0.00 2.40
3067 3112 2.135933 CGCTTCCCTATCCGAACATTC 58.864 52.381 0.00 0.00 0.00 2.67
3068 3113 1.202651 CCGCTTCCCTATCCGAACATT 60.203 52.381 0.00 0.00 0.00 2.71
3069 3114 0.393077 CCGCTTCCCTATCCGAACAT 59.607 55.000 0.00 0.00 0.00 2.71
3070 3115 1.682451 CCCGCTTCCCTATCCGAACA 61.682 60.000 0.00 0.00 0.00 3.18
3071 3116 1.069258 CCCGCTTCCCTATCCGAAC 59.931 63.158 0.00 0.00 0.00 3.95
3072 3117 0.471211 ATCCCGCTTCCCTATCCGAA 60.471 55.000 0.00 0.00 0.00 4.30
3073 3118 0.471211 AATCCCGCTTCCCTATCCGA 60.471 55.000 0.00 0.00 0.00 4.55
3074 3119 0.037232 GAATCCCGCTTCCCTATCCG 60.037 60.000 0.00 0.00 0.00 4.18
3075 3120 1.276705 GAGAATCCCGCTTCCCTATCC 59.723 57.143 0.00 0.00 0.00 2.59
3076 3121 2.028567 CAGAGAATCCCGCTTCCCTATC 60.029 54.545 0.00 0.00 33.66 2.08
3077 3122 1.974236 CAGAGAATCCCGCTTCCCTAT 59.026 52.381 0.00 0.00 33.66 2.57
3078 3123 1.414158 CAGAGAATCCCGCTTCCCTA 58.586 55.000 0.00 0.00 33.66 3.53
3079 3124 1.977293 GCAGAGAATCCCGCTTCCCT 61.977 60.000 0.00 0.00 33.66 4.20
3080 3125 1.524849 GCAGAGAATCCCGCTTCCC 60.525 63.158 0.00 0.00 33.66 3.97
3081 3126 0.813210 CTGCAGAGAATCCCGCTTCC 60.813 60.000 8.42 0.00 35.27 3.46
3082 3127 0.813210 CCTGCAGAGAATCCCGCTTC 60.813 60.000 17.39 0.00 35.27 3.86
3083 3128 1.222936 CCTGCAGAGAATCCCGCTT 59.777 57.895 17.39 0.00 35.27 4.68
3084 3129 1.684386 CTCCTGCAGAGAATCCCGCT 61.684 60.000 17.39 0.00 46.50 5.52
3085 3130 1.227497 CTCCTGCAGAGAATCCCGC 60.227 63.158 17.39 0.00 46.50 6.13
3093 3138 2.575993 CACCCGTCTCCTGCAGAG 59.424 66.667 17.39 10.96 44.75 3.35
3094 3139 3.695606 GCACCCGTCTCCTGCAGA 61.696 66.667 17.39 0.00 0.00 4.26
3095 3140 3.245668 AAGCACCCGTCTCCTGCAG 62.246 63.158 6.78 6.78 33.06 4.41
3096 3141 3.241530 AAGCACCCGTCTCCTGCA 61.242 61.111 0.00 0.00 33.06 4.41
3097 3142 2.743928 CAAGCACCCGTCTCCTGC 60.744 66.667 0.00 0.00 0.00 4.85
3098 3143 2.046892 CCAAGCACCCGTCTCCTG 60.047 66.667 0.00 0.00 0.00 3.86
3099 3144 2.203788 TCCAAGCACCCGTCTCCT 60.204 61.111 0.00 0.00 0.00 3.69
3100 3145 2.232298 CTCTCCAAGCACCCGTCTCC 62.232 65.000 0.00 0.00 0.00 3.71
3101 3146 1.216710 CTCTCCAAGCACCCGTCTC 59.783 63.158 0.00 0.00 0.00 3.36
3102 3147 0.832135 TTCTCTCCAAGCACCCGTCT 60.832 55.000 0.00 0.00 0.00 4.18
3103 3148 0.034896 TTTCTCTCCAAGCACCCGTC 59.965 55.000 0.00 0.00 0.00 4.79
3104 3149 0.472471 TTTTCTCTCCAAGCACCCGT 59.528 50.000 0.00 0.00 0.00 5.28
3105 3150 1.604604 TTTTTCTCTCCAAGCACCCG 58.395 50.000 0.00 0.00 0.00 5.28
3121 3166 6.642707 TTTTGACATCGGACCATACTTTTT 57.357 33.333 0.00 0.00 0.00 1.94
3122 3167 6.642707 TTTTTGACATCGGACCATACTTTT 57.357 33.333 0.00 0.00 0.00 2.27
3123 3168 6.834168 ATTTTTGACATCGGACCATACTTT 57.166 33.333 0.00 0.00 0.00 2.66
3124 3169 6.834168 AATTTTTGACATCGGACCATACTT 57.166 33.333 0.00 0.00 0.00 2.24
3125 3170 7.931578 TTAATTTTTGACATCGGACCATACT 57.068 32.000 0.00 0.00 0.00 2.12
3126 3171 8.973835 TTTTAATTTTTGACATCGGACCATAC 57.026 30.769 0.00 0.00 0.00 2.39
3127 3172 8.247562 CCTTTTAATTTTTGACATCGGACCATA 58.752 33.333 0.00 0.00 0.00 2.74
3128 3173 7.096551 CCTTTTAATTTTTGACATCGGACCAT 58.903 34.615 0.00 0.00 0.00 3.55
3129 3174 6.451393 CCTTTTAATTTTTGACATCGGACCA 58.549 36.000 0.00 0.00 0.00 4.02
3130 3175 5.867174 CCCTTTTAATTTTTGACATCGGACC 59.133 40.000 0.00 0.00 0.00 4.46
3131 3176 6.452242 ACCCTTTTAATTTTTGACATCGGAC 58.548 36.000 0.00 0.00 0.00 4.79
3132 3177 6.658188 ACCCTTTTAATTTTTGACATCGGA 57.342 33.333 0.00 0.00 0.00 4.55
3133 3178 6.926272 TCAACCCTTTTAATTTTTGACATCGG 59.074 34.615 0.00 0.00 0.00 4.18
3134 3179 7.938563 TCAACCCTTTTAATTTTTGACATCG 57.061 32.000 0.00 0.00 0.00 3.84
3135 3180 9.325198 ACTTCAACCCTTTTAATTTTTGACATC 57.675 29.630 0.00 0.00 0.00 3.06
3163 3208 8.437360 TCGAATACACATGCATCTCTATTTTT 57.563 30.769 0.00 0.00 0.00 1.94
3164 3209 7.712639 ACTCGAATACACATGCATCTCTATTTT 59.287 33.333 0.00 0.00 0.00 1.82
3165 3210 7.212976 ACTCGAATACACATGCATCTCTATTT 58.787 34.615 0.00 0.00 0.00 1.40
3166 3211 6.753180 ACTCGAATACACATGCATCTCTATT 58.247 36.000 0.00 0.00 0.00 1.73
3167 3212 6.338214 ACTCGAATACACATGCATCTCTAT 57.662 37.500 0.00 0.00 0.00 1.98
3168 3213 5.774498 ACTCGAATACACATGCATCTCTA 57.226 39.130 0.00 0.00 0.00 2.43
3169 3214 4.662468 ACTCGAATACACATGCATCTCT 57.338 40.909 0.00 0.00 0.00 3.10
3170 3215 5.725110 AAACTCGAATACACATGCATCTC 57.275 39.130 0.00 0.00 0.00 2.75
3171 3216 6.500684 AAAAACTCGAATACACATGCATCT 57.499 33.333 0.00 0.00 0.00 2.90
3172 3217 8.841444 AATAAAAACTCGAATACACATGCATC 57.159 30.769 0.00 0.00 0.00 3.91
3173 3218 9.638239 AAAATAAAAACTCGAATACACATGCAT 57.362 25.926 0.00 0.00 0.00 3.96
3174 3219 9.123709 GAAAATAAAAACTCGAATACACATGCA 57.876 29.630 0.00 0.00 0.00 3.96
3175 3220 9.341899 AGAAAATAAAAACTCGAATACACATGC 57.658 29.630 0.00 0.00 0.00 4.06
3205 3250 9.422681 AGCTATCACTAGTAGACCTCATTAAAA 57.577 33.333 3.59 0.00 0.00 1.52
3206 3251 8.998277 AGCTATCACTAGTAGACCTCATTAAA 57.002 34.615 3.59 0.00 0.00 1.52
3207 3252 8.851145 CAAGCTATCACTAGTAGACCTCATTAA 58.149 37.037 3.59 0.00 0.00 1.40
3208 3253 7.999545 ACAAGCTATCACTAGTAGACCTCATTA 59.000 37.037 3.59 0.00 0.00 1.90
3209 3254 6.836527 ACAAGCTATCACTAGTAGACCTCATT 59.163 38.462 3.59 0.00 0.00 2.57
3210 3255 6.369629 ACAAGCTATCACTAGTAGACCTCAT 58.630 40.000 3.59 0.00 0.00 2.90
3211 3256 5.756918 ACAAGCTATCACTAGTAGACCTCA 58.243 41.667 3.59 0.00 0.00 3.86
3212 3257 7.989416 ATACAAGCTATCACTAGTAGACCTC 57.011 40.000 3.59 0.00 0.00 3.85
3213 3258 7.999545 TCAATACAAGCTATCACTAGTAGACCT 59.000 37.037 3.59 0.00 0.00 3.85
3214 3259 8.167605 TCAATACAAGCTATCACTAGTAGACC 57.832 38.462 3.59 0.00 0.00 3.85
3215 3260 8.293867 CCTCAATACAAGCTATCACTAGTAGAC 58.706 40.741 3.59 0.00 0.00 2.59
3216 3261 8.218488 TCCTCAATACAAGCTATCACTAGTAGA 58.782 37.037 3.59 0.00 0.00 2.59
3217 3262 8.397575 TCCTCAATACAAGCTATCACTAGTAG 57.602 38.462 0.00 0.00 0.00 2.57
3218 3263 8.218488 TCTCCTCAATACAAGCTATCACTAGTA 58.782 37.037 0.00 0.00 0.00 1.82
3219 3264 7.063593 TCTCCTCAATACAAGCTATCACTAGT 58.936 38.462 0.00 0.00 0.00 2.57
3220 3265 7.517614 TCTCCTCAATACAAGCTATCACTAG 57.482 40.000 0.00 0.00 0.00 2.57
3221 3266 7.898014 TTCTCCTCAATACAAGCTATCACTA 57.102 36.000 0.00 0.00 0.00 2.74
3222 3267 6.798427 TTCTCCTCAATACAAGCTATCACT 57.202 37.500 0.00 0.00 0.00 3.41
3223 3268 7.849804 TTTTCTCCTCAATACAAGCTATCAC 57.150 36.000 0.00 0.00 0.00 3.06
3260 3305 9.581099 CCGTGATAAAAAGTAATTTAAGGCATT 57.419 29.630 0.00 0.00 0.00 3.56
3261 3306 8.962679 TCCGTGATAAAAAGTAATTTAAGGCAT 58.037 29.630 0.00 0.00 0.00 4.40
3262 3307 8.338072 TCCGTGATAAAAAGTAATTTAAGGCA 57.662 30.769 0.00 0.00 0.00 4.75
3285 3330 6.239430 ATGATGGCATACGGATACAGATATCC 60.239 42.308 0.00 3.61 42.09 2.59
3286 3331 6.149129 TGATGGCATACGGATACAGATATC 57.851 41.667 0.00 0.00 37.12 1.63
3287 3332 6.737720 ATGATGGCATACGGATACAGATAT 57.262 37.500 0.00 0.00 31.57 1.63
3288 3333 6.070824 ACAATGATGGCATACGGATACAGATA 60.071 38.462 0.00 0.00 33.44 1.98
3289 3334 5.181009 CAATGATGGCATACGGATACAGAT 58.819 41.667 0.00 0.00 33.44 2.90
3290 3335 4.040339 ACAATGATGGCATACGGATACAGA 59.960 41.667 0.00 0.00 33.44 3.41
3291 3336 4.318332 ACAATGATGGCATACGGATACAG 58.682 43.478 0.00 0.00 33.44 2.74
3292 3337 4.350368 ACAATGATGGCATACGGATACA 57.650 40.909 0.00 0.00 33.44 2.29
3293 3338 5.234752 TGTACAATGATGGCATACGGATAC 58.765 41.667 0.00 2.02 33.44 2.24
3294 3339 5.476091 TGTACAATGATGGCATACGGATA 57.524 39.130 0.00 0.00 33.44 2.59
3295 3340 4.350368 TGTACAATGATGGCATACGGAT 57.650 40.909 0.00 0.00 33.44 4.18
3296 3341 3.828875 TGTACAATGATGGCATACGGA 57.171 42.857 0.00 0.00 33.44 4.69
3297 3342 3.365264 GCATGTACAATGATGGCATACGG 60.365 47.826 0.00 0.00 33.44 4.02
3298 3343 3.365264 GGCATGTACAATGATGGCATACG 60.365 47.826 14.01 0.00 43.00 3.06
3299 3344 3.057315 GGGCATGTACAATGATGGCATAC 60.057 47.826 18.87 0.00 44.77 2.39
3300 3345 3.156293 GGGCATGTACAATGATGGCATA 58.844 45.455 18.87 0.00 44.77 3.14
3301 3346 1.965643 GGGCATGTACAATGATGGCAT 59.034 47.619 18.87 0.00 44.77 4.40
3302 3347 1.063792 AGGGCATGTACAATGATGGCA 60.064 47.619 18.87 0.00 44.77 4.92
3303 3348 1.610522 GAGGGCATGTACAATGATGGC 59.389 52.381 11.25 11.25 42.82 4.40
3304 3349 2.882761 CAGAGGGCATGTACAATGATGG 59.117 50.000 0.00 0.00 0.00 3.51
3305 3350 3.562973 GTCAGAGGGCATGTACAATGATG 59.437 47.826 0.00 0.00 0.00 3.07
3306 3351 3.742327 CGTCAGAGGGCATGTACAATGAT 60.742 47.826 0.00 0.00 0.00 2.45
3307 3352 2.418609 CGTCAGAGGGCATGTACAATGA 60.419 50.000 0.00 0.00 0.00 2.57
3308 3353 1.935873 CGTCAGAGGGCATGTACAATG 59.064 52.381 0.00 0.12 0.00 2.82
3309 3354 1.134401 CCGTCAGAGGGCATGTACAAT 60.134 52.381 0.00 0.00 0.00 2.71
3310 3355 0.249120 CCGTCAGAGGGCATGTACAA 59.751 55.000 0.00 0.00 0.00 2.41
3311 3356 0.902984 ACCGTCAGAGGGCATGTACA 60.903 55.000 9.21 0.00 35.02 2.90
3312 3357 0.179108 GACCGTCAGAGGGCATGTAC 60.179 60.000 9.21 0.00 39.73 2.90
3313 3358 0.324368 AGACCGTCAGAGGGCATGTA 60.324 55.000 9.21 0.00 43.43 2.29
3314 3359 0.324368 TAGACCGTCAGAGGGCATGT 60.324 55.000 9.21 0.00 43.43 3.21
3315 3360 0.103208 GTAGACCGTCAGAGGGCATG 59.897 60.000 9.21 0.00 43.43 4.06
3316 3361 0.324368 TGTAGACCGTCAGAGGGCAT 60.324 55.000 9.21 0.71 43.43 4.40
3317 3362 0.324368 ATGTAGACCGTCAGAGGGCA 60.324 55.000 9.21 0.00 43.43 5.36
3318 3363 0.386113 GATGTAGACCGTCAGAGGGC 59.614 60.000 9.21 2.57 40.48 5.19
3319 3364 2.060050 AGATGTAGACCGTCAGAGGG 57.940 55.000 7.67 7.67 35.02 4.30
3320 3365 3.542648 TGTAGATGTAGACCGTCAGAGG 58.457 50.000 0.40 0.00 37.30 3.69
3321 3366 4.496673 GCTTGTAGATGTAGACCGTCAGAG 60.497 50.000 0.40 0.00 0.00 3.35
3322 3367 3.377485 GCTTGTAGATGTAGACCGTCAGA 59.623 47.826 0.40 0.00 0.00 3.27
3323 3368 3.696898 GCTTGTAGATGTAGACCGTCAG 58.303 50.000 0.40 0.00 0.00 3.51
3324 3369 2.096980 CGCTTGTAGATGTAGACCGTCA 59.903 50.000 0.40 0.00 0.00 4.35
3325 3370 2.097142 ACGCTTGTAGATGTAGACCGTC 59.903 50.000 0.00 0.00 0.00 4.79
3326 3371 2.089980 ACGCTTGTAGATGTAGACCGT 58.910 47.619 0.00 0.00 0.00 4.83
3327 3372 2.096980 TGACGCTTGTAGATGTAGACCG 59.903 50.000 0.00 0.00 0.00 4.79
3328 3373 3.119602 TGTGACGCTTGTAGATGTAGACC 60.120 47.826 0.00 0.00 0.00 3.85
3329 3374 4.092771 TGTGACGCTTGTAGATGTAGAC 57.907 45.455 0.00 0.00 0.00 2.59
3330 3375 4.983671 ATGTGACGCTTGTAGATGTAGA 57.016 40.909 0.00 0.00 0.00 2.59
3331 3376 7.222805 ACATAAATGTGACGCTTGTAGATGTAG 59.777 37.037 0.00 0.00 40.03 2.74
3332 3377 7.039270 ACATAAATGTGACGCTTGTAGATGTA 58.961 34.615 0.00 0.00 40.03 2.29
3333 3378 5.874810 ACATAAATGTGACGCTTGTAGATGT 59.125 36.000 0.00 0.00 40.03 3.06
3337 3382 5.927030 ACAACATAAATGTGACGCTTGTAG 58.073 37.500 0.00 0.00 41.61 2.74
3356 3401 2.223502 TGTCAGACTCGTGAGACACAAC 60.224 50.000 3.44 0.00 36.20 3.32
3395 3446 0.469144 ATGTTCGGGCAAGGGTTTGT 60.469 50.000 0.00 0.00 36.65 2.83
3396 3447 0.038343 CATGTTCGGGCAAGGGTTTG 60.038 55.000 0.00 0.00 37.36 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.