Multiple sequence alignment - TraesCS5A01G186900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G186900 chr5A 100.000 4680 0 0 1 4680 388637539 388632860 0.000000e+00 8643.0
1 TraesCS5A01G186900 chr5A 94.186 86 4 1 4594 4678 512841712 512841627 3.800000e-26 130.0
2 TraesCS5A01G186900 chr5A 95.238 42 2 0 3721 3762 119206993 119207034 3.020000e-07 67.6
3 TraesCS5A01G186900 chr5D 91.905 3854 198 56 882 4678 294954778 294950982 0.000000e+00 5284.0
4 TraesCS5A01G186900 chr5D 93.684 190 12 0 1 190 295068939 295068750 7.660000e-73 285.0
5 TraesCS5A01G186900 chr5D 97.674 43 1 0 305 347 42925820 42925778 1.810000e-09 75.0
6 TraesCS5A01G186900 chr5B 92.564 3066 162 32 842 3861 336776439 336773394 0.000000e+00 4338.0
7 TraesCS5A01G186900 chr5B 83.958 854 61 30 3862 4678 336773315 336772501 0.000000e+00 749.0
8 TraesCS5A01G186900 chr5B 93.197 294 15 2 1 290 336788313 336788021 1.200000e-115 427.0
9 TraesCS5A01G186900 chr5B 90.710 183 13 1 345 527 336788023 336787845 1.680000e-59 241.0
10 TraesCS5A01G186900 chr5B 92.373 118 9 0 672 789 336787784 336787667 8.050000e-38 169.0
11 TraesCS5A01G186900 chr5B 94.253 87 2 3 4594 4678 517701607 517701522 3.800000e-26 130.0
12 TraesCS5A01G186900 chr5B 94.186 86 4 1 4594 4678 517706535 517706450 3.800000e-26 130.0
13 TraesCS5A01G186900 chr5B 97.727 44 1 0 304 347 448597748 448597791 5.020000e-10 76.8
14 TraesCS5A01G186900 chr5B 92.453 53 2 2 295 347 433527359 433527309 1.810000e-09 75.0
15 TraesCS5A01G186900 chr4D 93.878 147 7 2 526 671 343547051 343546906 2.190000e-53 220.0
16 TraesCS5A01G186900 chr4B 92.810 153 9 2 526 676 617289279 617289127 2.190000e-53 220.0
17 TraesCS5A01G186900 chr6B 93.197 147 9 1 526 671 56968282 56968136 1.020000e-51 215.0
18 TraesCS5A01G186900 chr6B 91.083 157 12 2 526 680 191515316 191515160 1.320000e-50 211.0
19 TraesCS5A01G186900 chr2B 92.617 149 10 1 526 673 225363224 225363076 3.670000e-51 213.0
20 TraesCS5A01G186900 chr2B 93.023 86 5 1 4594 4678 793817325 793817240 1.770000e-24 124.0
21 TraesCS5A01G186900 chr2B 93.023 86 5 1 4594 4678 793822248 793822163 1.770000e-24 124.0
22 TraesCS5A01G186900 chr2B 100.000 40 0 0 308 347 591262180 591262141 1.810000e-09 75.0
23 TraesCS5A01G186900 chr2B 92.683 41 2 1 3722 3762 39208680 39208719 1.820000e-04 58.4
24 TraesCS5A01G186900 chr7D 92.568 148 10 1 526 672 28856353 28856206 1.320000e-50 211.0
25 TraesCS5A01G186900 chr7D 87.135 171 19 3 526 693 49830615 49830445 1.720000e-44 191.0
26 TraesCS5A01G186900 chr3B 92.517 147 10 1 526 671 812677199 812677345 4.750000e-50 209.0
27 TraesCS5A01G186900 chr3B 91.837 49 4 0 299 347 125863791 125863743 8.400000e-08 69.4
28 TraesCS5A01G186900 chr1A 91.837 147 11 1 526 671 341874671 341874525 2.210000e-48 204.0
29 TraesCS5A01G186900 chr1A 93.750 48 3 0 300 347 269572485 269572438 6.500000e-09 73.1
30 TraesCS5A01G186900 chr4A 94.186 86 4 1 4594 4678 724880746 724880661 3.800000e-26 130.0
31 TraesCS5A01G186900 chr4A 94.186 86 4 1 4594 4678 740983026 740982941 3.800000e-26 130.0
32 TraesCS5A01G186900 chr4A 93.750 48 3 0 300 347 168770049 168770002 6.500000e-09 73.1
33 TraesCS5A01G186900 chr4A 92.000 50 2 1 3715 3762 622876446 622876495 8.400000e-08 69.4
34 TraesCS5A01G186900 chr4A 95.238 42 2 0 3721 3762 622799684 622799725 3.020000e-07 67.6
35 TraesCS5A01G186900 chr4A 100.000 29 0 0 3734 3762 622859562 622859590 2.000000e-03 54.7
36 TraesCS5A01G186900 chr2A 97.778 45 1 0 303 347 718257388 718257344 1.400000e-10 78.7
37 TraesCS5A01G186900 chr7B 95.745 47 2 0 301 347 504872604 504872650 5.020000e-10 76.8
38 TraesCS5A01G186900 chr1D 95.238 42 2 0 3721 3762 356143470 356143429 3.020000e-07 67.6
39 TraesCS5A01G186900 chr1D 100.000 28 0 0 3760 3787 460878921 460878948 8.000000e-03 52.8
40 TraesCS5A01G186900 chr3A 92.857 42 3 0 3721 3762 32153588 32153629 1.410000e-05 62.1
41 TraesCS5A01G186900 chr6D 100.000 28 0 0 95 122 297469226 297469253 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G186900 chr5A 388632860 388637539 4679 True 8643.0 8643 100.000000 1 4680 1 chr5A.!!$R1 4679
1 TraesCS5A01G186900 chr5D 294950982 294954778 3796 True 5284.0 5284 91.905000 882 4678 1 chr5D.!!$R2 3796
2 TraesCS5A01G186900 chr5B 336772501 336776439 3938 True 2543.5 4338 88.261000 842 4678 2 chr5B.!!$R4 3836
3 TraesCS5A01G186900 chr5B 336787667 336788313 646 True 279.0 427 92.093333 1 789 3 chr5B.!!$R5 788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
391 396 0.168128 GATTGACCCGCTTGTTTCGG 59.832 55.0 0.0 0.0 46.05 4.30 F
1203 1208 0.036294 GGAACTGCCCTACCAGTCAC 60.036 60.0 0.0 0.0 44.86 3.67 F
1697 1715 0.802494 AGGTATTGTTTGCCGCTTCG 59.198 50.0 0.0 0.0 34.79 3.79 F
3454 3509 0.037447 ACCCTCTCAAAGCTTCTGCC 59.963 55.0 0.0 0.0 40.80 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1789 1808 0.034670 AGGCTTCAAGACAGGCATCC 60.035 55.0 0.00 0.0 39.31 3.51 R
2377 2400 0.388649 CACGCACCTAGACACCTGAC 60.389 60.0 0.00 0.0 0.00 3.51 R
3599 3654 0.394899 GCCCACAGCTTCTTGGCTAT 60.395 55.0 6.15 0.0 41.00 2.97 R
4356 4526 0.865769 GACATTCACGCTCCGTTTGT 59.134 50.0 0.00 0.0 38.32 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.228188 ACATGTGGTTGGTTGATCAGT 57.772 42.857 0.00 0.00 0.00 3.41
76 77 4.841443 AACCCTAGGTTTTTACGCTTTG 57.159 40.909 8.29 0.00 44.33 2.77
117 118 5.919348 ATATTCATTCAGTGGGAGGTGAT 57.081 39.130 0.00 0.00 0.00 3.06
129 130 2.093447 GGGAGGTGATGTTCTTGTCGAT 60.093 50.000 0.00 0.00 0.00 3.59
142 143 4.649845 TCGATAGCGAGGTGTCCA 57.350 55.556 0.00 0.00 42.51 4.02
145 146 0.668535 CGATAGCGAGGTGTCCATGA 59.331 55.000 0.00 0.00 40.82 3.07
158 159 4.320494 GGTGTCCATGATGACTTTGTCAAC 60.320 45.833 4.46 3.02 45.96 3.18
159 160 3.820467 TGTCCATGATGACTTTGTCAACC 59.180 43.478 4.46 1.43 45.96 3.77
227 232 6.821031 AGGTGTTGTAACCGCAATAATTTA 57.179 33.333 0.00 0.00 45.53 1.40
233 238 9.530633 TGTTGTAACCGCAATAATTTAAAGTTT 57.469 25.926 0.00 0.00 0.00 2.66
251 256 6.530019 AAGTTTTCATATAAGCACAAGGGG 57.470 37.500 0.00 0.00 0.00 4.79
252 257 5.580022 AGTTTTCATATAAGCACAAGGGGT 58.420 37.500 0.00 0.00 0.00 4.95
258 263 6.668645 TCATATAAGCACAAGGGGTAACAAT 58.331 36.000 0.00 0.00 39.74 2.71
287 292 6.199908 GCAAATTTATATGCATTGTAACCGCA 59.800 34.615 3.54 0.00 42.12 5.69
288 293 7.567409 GCAAATTTATATGCATTGTAACCGCAG 60.567 37.037 3.54 0.00 42.12 5.18
311 316 4.210832 GCGCAGGCTATAACTTTAAAGG 57.789 45.455 19.14 2.39 35.83 3.11
312 317 3.003378 GCGCAGGCTATAACTTTAAAGGG 59.997 47.826 19.14 5.38 35.83 3.95
313 318 3.003378 CGCAGGCTATAACTTTAAAGGGC 59.997 47.826 19.14 12.42 0.00 5.19
314 319 3.951680 GCAGGCTATAACTTTAAAGGGCA 59.048 43.478 19.14 4.37 0.00 5.36
315 320 4.036852 GCAGGCTATAACTTTAAAGGGCAG 59.963 45.833 19.14 10.61 0.00 4.85
316 321 4.036852 CAGGCTATAACTTTAAAGGGCAGC 59.963 45.833 19.14 18.38 0.00 5.25
317 322 3.318275 GGCTATAACTTTAAAGGGCAGCC 59.682 47.826 24.30 24.30 39.28 4.85
318 323 3.318275 GCTATAACTTTAAAGGGCAGCCC 59.682 47.826 24.90 24.90 45.90 5.19
329 334 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
330 335 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
331 336 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
332 337 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
333 338 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
334 339 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
335 340 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
336 341 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
337 342 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
339 344 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
340 345 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
341 346 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
342 347 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
343 348 3.019003 ATGTAGCTCCCGCTTGCGT 62.019 57.895 13.97 0.00 46.47 5.24
391 396 0.168128 GATTGACCCGCTTGTTTCGG 59.832 55.000 0.00 0.00 46.05 4.30
400 405 1.949257 CTTGTTTCGGTGGGCTGAC 59.051 57.895 0.00 0.00 0.00 3.51
451 456 3.944055 TGTGAAGCAGACCTAGAAGTC 57.056 47.619 0.00 0.00 37.01 3.01
477 482 2.091333 ACCTTGAAATTATGGGCCGGAT 60.091 45.455 5.05 0.00 0.00 4.18
484 489 0.468226 TTATGGGCCGGATCAGTGTC 59.532 55.000 5.05 0.00 0.00 3.67
488 493 2.668632 GCCGGATCAGTGTCCCAA 59.331 61.111 5.05 0.00 34.67 4.12
489 494 1.224592 GCCGGATCAGTGTCCCAAT 59.775 57.895 5.05 0.00 34.67 3.16
490 495 1.097547 GCCGGATCAGTGTCCCAATG 61.098 60.000 5.05 0.00 34.67 2.82
491 496 0.541392 CCGGATCAGTGTCCCAATGA 59.459 55.000 0.00 0.00 42.48 2.57
506 511 3.259064 CCAATGAGTAACGTTCGTCCAT 58.741 45.455 2.82 1.77 0.00 3.41
515 520 1.209504 ACGTTCGTCCATTCCCATCAT 59.790 47.619 0.00 0.00 0.00 2.45
517 522 1.949525 GTTCGTCCATTCCCATCATGG 59.050 52.381 0.00 0.00 42.51 3.66
527 532 2.589720 TCCCATCATGGCATGTCATTC 58.410 47.619 25.62 0.00 35.79 2.67
528 533 2.091775 TCCCATCATGGCATGTCATTCA 60.092 45.455 25.62 7.06 35.79 2.57
530 535 3.133183 CCCATCATGGCATGTCATTCAAA 59.867 43.478 25.62 5.55 35.79 2.69
531 536 4.116961 CCATCATGGCATGTCATTCAAAC 58.883 43.478 25.62 0.00 0.00 2.93
532 537 3.490800 TCATGGCATGTCATTCAAACG 57.509 42.857 25.62 0.00 0.00 3.60
534 539 1.614996 TGGCATGTCATTCAAACGGT 58.385 45.000 0.00 0.00 0.00 4.83
535 540 1.269174 TGGCATGTCATTCAAACGGTG 59.731 47.619 0.00 0.00 0.00 4.94
546 551 3.678056 TCAAACGGTGAAGCTCATAGT 57.322 42.857 0.00 0.00 31.51 2.12
550 555 5.637810 TCAAACGGTGAAGCTCATAGTTTAG 59.362 40.000 14.70 11.69 37.01 1.85
551 556 3.522553 ACGGTGAAGCTCATAGTTTAGC 58.477 45.455 0.00 0.00 39.08 3.09
560 565 5.028428 GCTCATAGTTTAGCTAAGCATGC 57.972 43.478 20.66 10.51 35.80 4.06
562 567 5.559799 GCTCATAGTTTAGCTAAGCATGCAC 60.560 44.000 21.98 6.43 35.80 4.57
563 568 5.674525 TCATAGTTTAGCTAAGCATGCACT 58.325 37.500 21.98 13.92 32.72 4.40
564 569 5.755375 TCATAGTTTAGCTAAGCATGCACTC 59.245 40.000 21.98 5.81 32.72 3.51
565 570 4.213564 AGTTTAGCTAAGCATGCACTCT 57.786 40.909 21.98 13.03 0.00 3.24
566 571 4.187694 AGTTTAGCTAAGCATGCACTCTC 58.812 43.478 21.98 4.68 0.00 3.20
568 573 2.600470 AGCTAAGCATGCACTCTCTC 57.400 50.000 21.98 1.90 0.00 3.20
569 574 2.109774 AGCTAAGCATGCACTCTCTCT 58.890 47.619 21.98 4.31 0.00 3.10
570 575 2.101249 AGCTAAGCATGCACTCTCTCTC 59.899 50.000 21.98 0.00 0.00 3.20
572 577 0.175302 AAGCATGCACTCTCTCTCGG 59.825 55.000 21.98 0.00 0.00 4.63
573 578 0.969917 AGCATGCACTCTCTCTCGGT 60.970 55.000 21.98 0.00 0.00 4.69
574 579 0.805322 GCATGCACTCTCTCTCGGTG 60.805 60.000 14.21 0.00 0.00 4.94
576 581 2.202544 GCACTCTCTCTCGGTGCG 60.203 66.667 0.00 0.00 44.91 5.34
577 582 2.691771 GCACTCTCTCTCGGTGCGA 61.692 63.158 0.00 0.00 44.91 5.10
592 597 2.184322 CGAGGCGCCACATGTAGT 59.816 61.111 31.54 4.27 0.00 2.73
593 598 1.447838 CGAGGCGCCACATGTAGTT 60.448 57.895 31.54 3.33 0.00 2.24
594 599 1.695893 CGAGGCGCCACATGTAGTTG 61.696 60.000 31.54 4.88 0.00 3.16
595 600 1.369091 GAGGCGCCACATGTAGTTGG 61.369 60.000 31.54 0.00 0.00 3.77
596 601 2.485122 GCGCCACATGTAGTTGGC 59.515 61.111 13.68 13.68 39.52 4.52
597 602 2.040544 GCGCCACATGTAGTTGGCT 61.041 57.895 19.48 0.00 40.23 4.75
598 603 0.742990 GCGCCACATGTAGTTGGCTA 60.743 55.000 19.48 0.00 40.23 3.93
599 604 1.732941 CGCCACATGTAGTTGGCTAA 58.267 50.000 19.48 0.00 40.23 3.09
600 605 1.665679 CGCCACATGTAGTTGGCTAAG 59.334 52.381 19.48 4.32 40.23 2.18
601 606 1.401905 GCCACATGTAGTTGGCTAAGC 59.598 52.381 15.86 0.00 39.68 3.09
614 619 3.402628 GGCTAAGCCTCATAATCCGAA 57.597 47.619 0.00 0.00 46.69 4.30
615 620 3.944087 GGCTAAGCCTCATAATCCGAAT 58.056 45.455 0.00 0.00 46.69 3.34
616 621 4.327680 GGCTAAGCCTCATAATCCGAATT 58.672 43.478 0.00 0.00 46.69 2.17
617 622 4.154918 GGCTAAGCCTCATAATCCGAATTG 59.845 45.833 0.00 0.00 46.69 2.32
618 623 4.757149 GCTAAGCCTCATAATCCGAATTGT 59.243 41.667 0.00 0.00 0.00 2.71
619 624 5.932303 GCTAAGCCTCATAATCCGAATTGTA 59.068 40.000 0.00 0.00 0.00 2.41
620 625 6.595716 GCTAAGCCTCATAATCCGAATTGTAT 59.404 38.462 0.00 0.00 0.00 2.29
621 626 7.201565 GCTAAGCCTCATAATCCGAATTGTATC 60.202 40.741 0.00 0.00 0.00 2.24
622 627 5.491982 AGCCTCATAATCCGAATTGTATCC 58.508 41.667 0.00 0.00 0.00 2.59
623 628 4.636206 GCCTCATAATCCGAATTGTATCCC 59.364 45.833 0.00 0.00 0.00 3.85
624 629 5.803145 GCCTCATAATCCGAATTGTATCCCA 60.803 44.000 0.00 0.00 0.00 4.37
625 630 5.643777 CCTCATAATCCGAATTGTATCCCAC 59.356 44.000 0.00 0.00 0.00 4.61
626 631 6.433847 TCATAATCCGAATTGTATCCCACT 57.566 37.500 0.00 0.00 0.00 4.00
627 632 6.464222 TCATAATCCGAATTGTATCCCACTC 58.536 40.000 0.00 0.00 0.00 3.51
628 633 3.771577 ATCCGAATTGTATCCCACTCC 57.228 47.619 0.00 0.00 0.00 3.85
629 634 2.473070 TCCGAATTGTATCCCACTCCA 58.527 47.619 0.00 0.00 0.00 3.86
630 635 3.045634 TCCGAATTGTATCCCACTCCAT 58.954 45.455 0.00 0.00 0.00 3.41
631 636 4.228010 TCCGAATTGTATCCCACTCCATA 58.772 43.478 0.00 0.00 0.00 2.74
632 637 4.844085 TCCGAATTGTATCCCACTCCATAT 59.156 41.667 0.00 0.00 0.00 1.78
633 638 4.937620 CCGAATTGTATCCCACTCCATATG 59.062 45.833 0.00 0.00 0.00 1.78
634 639 4.937620 CGAATTGTATCCCACTCCATATGG 59.062 45.833 16.25 16.25 36.94 2.74
635 640 5.279960 CGAATTGTATCCCACTCCATATGGA 60.280 44.000 23.17 23.17 43.08 3.41
636 641 6.577039 CGAATTGTATCCCACTCCATATGGAT 60.577 42.308 24.73 11.42 44.46 3.41
637 642 6.725101 ATTGTATCCCACTCCATATGGATT 57.275 37.500 24.73 16.73 44.46 3.01
638 643 7.829224 ATTGTATCCCACTCCATATGGATTA 57.171 36.000 24.73 5.25 44.46 1.75
639 644 7.829224 TTGTATCCCACTCCATATGGATTAT 57.171 36.000 24.73 12.06 44.46 1.28
640 645 7.199167 TGTATCCCACTCCATATGGATTATG 57.801 40.000 24.73 20.61 44.46 1.90
641 646 6.965272 TGTATCCCACTCCATATGGATTATGA 59.035 38.462 24.73 18.02 44.46 2.15
642 647 7.628910 TGTATCCCACTCCATATGGATTATGAT 59.371 37.037 24.73 22.48 44.46 2.45
643 648 6.566079 TCCCACTCCATATGGATTATGATC 57.434 41.667 24.73 0.00 44.46 2.92
644 649 6.031386 TCCCACTCCATATGGATTATGATCA 58.969 40.000 24.73 0.00 44.46 2.92
645 650 6.504989 TCCCACTCCATATGGATTATGATCAA 59.495 38.462 24.73 7.34 44.46 2.57
646 651 7.185120 TCCCACTCCATATGGATTATGATCAAT 59.815 37.037 24.73 0.00 44.46 2.57
647 652 8.496916 CCCACTCCATATGGATTATGATCAATA 58.503 37.037 24.73 0.00 44.46 1.90
648 653 9.910267 CCACTCCATATGGATTATGATCAATAA 57.090 33.333 24.73 0.00 44.46 1.40
657 662 9.750783 ATGGATTATGATCAATAAAGCTTAGCT 57.249 29.630 0.00 0.00 35.55 3.32
658 663 9.578576 TGGATTATGATCAATAAAGCTTAGCTT 57.421 29.630 14.36 14.36 41.30 3.74
702 707 9.066892 TGCCATGAATGTTTATTAGGAAGATAC 57.933 33.333 0.00 0.00 0.00 2.24
760 765 3.059834 GCATGTTTCTAGCGCACAATTTG 59.940 43.478 11.47 1.25 0.00 2.32
768 773 2.384382 AGCGCACAATTTGTTTTCGAG 58.616 42.857 11.47 3.01 0.00 4.04
781 786 8.842358 ATTTGTTTTCGAGTGGAAGTATTAGA 57.158 30.769 0.00 0.00 35.70 2.10
789 794 8.251750 TCGAGTGGAAGTATTAGAAAAATGTG 57.748 34.615 0.00 0.00 0.00 3.21
790 795 7.876068 TCGAGTGGAAGTATTAGAAAAATGTGT 59.124 33.333 0.00 0.00 0.00 3.72
791 796 8.504005 CGAGTGGAAGTATTAGAAAAATGTGTT 58.496 33.333 0.00 0.00 0.00 3.32
793 798 9.965824 AGTGGAAGTATTAGAAAAATGTGTTTG 57.034 29.630 0.00 0.00 0.00 2.93
794 799 9.191995 GTGGAAGTATTAGAAAAATGTGTTTGG 57.808 33.333 0.00 0.00 0.00 3.28
795 800 8.919145 TGGAAGTATTAGAAAAATGTGTTTGGT 58.081 29.630 0.00 0.00 0.00 3.67
796 801 9.758651 GGAAGTATTAGAAAAATGTGTTTGGTT 57.241 29.630 0.00 0.00 0.00 3.67
798 803 9.541143 AAGTATTAGAAAAATGTGTTTGGTTGG 57.459 29.630 0.00 0.00 0.00 3.77
799 804 8.919145 AGTATTAGAAAAATGTGTTTGGTTGGA 58.081 29.630 0.00 0.00 0.00 3.53
800 805 9.705290 GTATTAGAAAAATGTGTTTGGTTGGAT 57.295 29.630 0.00 0.00 0.00 3.41
801 806 8.606040 ATTAGAAAAATGTGTTTGGTTGGATG 57.394 30.769 0.00 0.00 0.00 3.51
802 807 5.988287 AGAAAAATGTGTTTGGTTGGATGT 58.012 33.333 0.00 0.00 0.00 3.06
803 808 6.048509 AGAAAAATGTGTTTGGTTGGATGTC 58.951 36.000 0.00 0.00 0.00 3.06
804 809 5.612725 AAAATGTGTTTGGTTGGATGTCT 57.387 34.783 0.00 0.00 0.00 3.41
805 810 4.589216 AATGTGTTTGGTTGGATGTCTG 57.411 40.909 0.00 0.00 0.00 3.51
806 811 2.305928 TGTGTTTGGTTGGATGTCTGG 58.694 47.619 0.00 0.00 0.00 3.86
807 812 1.613437 GTGTTTGGTTGGATGTCTGGG 59.387 52.381 0.00 0.00 0.00 4.45
808 813 0.603065 GTTTGGTTGGATGTCTGGGC 59.397 55.000 0.00 0.00 0.00 5.36
809 814 0.541764 TTTGGTTGGATGTCTGGGCC 60.542 55.000 0.00 0.00 0.00 5.80
810 815 1.434513 TTGGTTGGATGTCTGGGCCT 61.435 55.000 4.53 0.00 0.00 5.19
811 816 1.379044 GGTTGGATGTCTGGGCCTG 60.379 63.158 4.53 4.06 0.00 4.85
812 817 1.685224 GTTGGATGTCTGGGCCTGA 59.315 57.895 9.30 9.30 0.00 3.86
813 818 0.393537 GTTGGATGTCTGGGCCTGAG 60.394 60.000 13.99 0.00 0.00 3.35
814 819 0.547471 TTGGATGTCTGGGCCTGAGA 60.547 55.000 13.99 13.27 0.00 3.27
815 820 0.547471 TGGATGTCTGGGCCTGAGAA 60.547 55.000 13.99 5.80 0.00 2.87
816 821 0.620556 GGATGTCTGGGCCTGAGAAA 59.379 55.000 13.99 0.00 0.00 2.52
817 822 1.004745 GGATGTCTGGGCCTGAGAAAA 59.995 52.381 13.99 0.67 0.00 2.29
818 823 2.555227 GGATGTCTGGGCCTGAGAAAAA 60.555 50.000 13.99 0.00 0.00 1.94
819 824 1.981256 TGTCTGGGCCTGAGAAAAAC 58.019 50.000 13.99 2.12 0.00 2.43
820 825 0.875059 GTCTGGGCCTGAGAAAAACG 59.125 55.000 13.99 0.00 0.00 3.60
821 826 0.472471 TCTGGGCCTGAGAAAAACGT 59.528 50.000 9.30 0.00 0.00 3.99
822 827 1.695242 TCTGGGCCTGAGAAAAACGTA 59.305 47.619 9.30 0.00 0.00 3.57
823 828 2.076863 CTGGGCCTGAGAAAAACGTAG 58.923 52.381 4.53 0.00 0.00 3.51
824 829 1.695242 TGGGCCTGAGAAAAACGTAGA 59.305 47.619 4.53 0.00 0.00 2.59
825 830 2.074576 GGGCCTGAGAAAAACGTAGAC 58.925 52.381 0.84 0.00 0.00 2.59
826 831 2.289506 GGGCCTGAGAAAAACGTAGACT 60.290 50.000 0.84 0.00 0.00 3.24
827 832 2.994578 GGCCTGAGAAAAACGTAGACTC 59.005 50.000 0.00 0.00 0.00 3.36
828 833 3.554337 GGCCTGAGAAAAACGTAGACTCA 60.554 47.826 0.00 11.86 36.42 3.41
829 834 4.056050 GCCTGAGAAAAACGTAGACTCAA 58.944 43.478 12.90 2.39 37.20 3.02
830 835 4.084485 GCCTGAGAAAAACGTAGACTCAAC 60.084 45.833 12.90 7.18 37.20 3.18
831 836 5.047847 CCTGAGAAAAACGTAGACTCAACA 58.952 41.667 12.90 0.00 37.20 3.33
832 837 5.522460 CCTGAGAAAAACGTAGACTCAACAA 59.478 40.000 12.90 0.00 37.20 2.83
833 838 6.036735 CCTGAGAAAAACGTAGACTCAACAAA 59.963 38.462 12.90 0.00 37.20 2.83
834 839 7.367159 TGAGAAAAACGTAGACTCAACAAAA 57.633 32.000 10.59 0.00 35.20 2.44
835 840 7.238571 TGAGAAAAACGTAGACTCAACAAAAC 58.761 34.615 10.59 0.00 35.20 2.43
836 841 7.095144 TGAGAAAAACGTAGACTCAACAAAACA 60.095 33.333 10.59 0.00 35.20 2.83
837 842 7.758495 AGAAAAACGTAGACTCAACAAAACAT 58.242 30.769 0.00 0.00 0.00 2.71
838 843 7.696453 AGAAAAACGTAGACTCAACAAAACATG 59.304 33.333 0.00 0.00 0.00 3.21
839 844 6.431198 AAACGTAGACTCAACAAAACATGT 57.569 33.333 0.00 0.00 46.82 3.21
840 845 7.542534 AAACGTAGACTCAACAAAACATGTA 57.457 32.000 0.00 0.00 42.99 2.29
875 880 1.156736 CACGGTTTGGATGTCTGGAC 58.843 55.000 0.00 0.00 0.00 4.02
1202 1207 0.472925 TGGAACTGCCCTACCAGTCA 60.473 55.000 0.00 0.00 44.86 3.41
1203 1208 0.036294 GGAACTGCCCTACCAGTCAC 60.036 60.000 0.00 0.00 44.86 3.67
1205 1210 2.125512 CTGCCCTACCAGTCACGC 60.126 66.667 0.00 0.00 0.00 5.34
1207 1212 4.468689 GCCCTACCAGTCACGCCC 62.469 72.222 0.00 0.00 0.00 6.13
1229 1235 6.148315 GCCCGCCTATTTTATCGTATTTTACT 59.852 38.462 0.00 0.00 0.00 2.24
1230 1236 7.515643 CCCGCCTATTTTATCGTATTTTACTG 58.484 38.462 0.00 0.00 0.00 2.74
1520 1530 6.072008 TGTTTCATGTCATTATTCACCACCTG 60.072 38.462 0.00 0.00 0.00 4.00
1523 1533 4.835284 TGTCATTATTCACCACCTGCTA 57.165 40.909 0.00 0.00 0.00 3.49
1567 1577 5.235831 TGCTGCATCTTGAATTCTCGATTAG 59.764 40.000 7.05 9.50 0.00 1.73
1568 1578 5.333952 GCTGCATCTTGAATTCTCGATTAGG 60.334 44.000 7.05 0.00 0.00 2.69
1597 1615 7.945033 TGTTCATTCTTTATTTTGTCCTTGC 57.055 32.000 0.00 0.00 0.00 4.01
1652 1670 4.338879 ACATGTTCTATTTTGCCTCAGCT 58.661 39.130 0.00 0.00 40.80 4.24
1655 1673 2.424956 GTTCTATTTTGCCTCAGCTGGG 59.575 50.000 15.13 11.13 40.80 4.45
1691 1709 2.162408 GCTGAGTGAGGTATTGTTTGCC 59.838 50.000 0.00 0.00 0.00 4.52
1697 1715 0.802494 AGGTATTGTTTGCCGCTTCG 59.198 50.000 0.00 0.00 34.79 3.79
1747 1765 3.900966 TTATCATCACTGCTGCACTCT 57.099 42.857 0.00 0.00 0.00 3.24
1748 1766 5.295152 CATTATCATCACTGCTGCACTCTA 58.705 41.667 0.00 0.00 0.00 2.43
1762 1781 5.482908 CTGCACTCTATGTAAAACCAGACT 58.517 41.667 0.00 0.00 0.00 3.24
1776 1795 6.959639 AAACCAGACTGCTAAAGAAATTCA 57.040 33.333 0.00 0.00 0.00 2.57
1951 1970 5.506317 GCTTGCAAAATCACACAGAGTTACT 60.506 40.000 0.00 0.00 32.53 2.24
1985 2004 2.163818 TGAGTACGTGCTTTCCTTGG 57.836 50.000 7.83 0.00 0.00 3.61
2089 2109 7.121315 GCCAATTCTCTAAGTGAACCTTAATGT 59.879 37.037 0.00 0.00 35.25 2.71
2090 2110 9.667107 CCAATTCTCTAAGTGAACCTTAATGTA 57.333 33.333 0.00 0.00 35.25 2.29
2280 2301 5.644636 ACCAACTGTACGAACTTTTTCTCAA 59.355 36.000 0.00 0.00 0.00 3.02
2286 2307 7.713942 ACTGTACGAACTTTTTCTCAACCTATT 59.286 33.333 0.00 0.00 0.00 1.73
2320 2343 1.405105 GCGGACATTGCCACATTATGT 59.595 47.619 0.00 0.00 35.33 2.29
2373 2396 6.239148 GCATCTATCTGACATAGAACTGGACA 60.239 42.308 0.00 0.00 39.30 4.02
2375 2398 7.904558 TCTATCTGACATAGAACTGGACATT 57.095 36.000 0.00 0.00 39.30 2.71
2377 2400 5.089970 TCTGACATAGAACTGGACATTGG 57.910 43.478 0.00 0.00 30.84 3.16
2467 2518 4.853468 TGAATTATGTTGCCACTCCCTA 57.147 40.909 0.00 0.00 0.00 3.53
2775 2829 3.709987 ACGAGTATACCAAATGTACGCC 58.290 45.455 0.00 0.00 30.46 5.68
2815 2869 5.462729 CACTTCATGCAGCTCTTATCTACAG 59.537 44.000 0.00 0.00 0.00 2.74
2824 2878 7.669304 TGCAGCTCTTATCTACAGAATCTATCT 59.331 37.037 0.00 0.00 39.68 1.98
2858 2912 6.716934 TTCCCATTGCAGTTTGTTTACTTA 57.283 33.333 0.00 0.00 0.00 2.24
2936 2991 2.093306 TGTGCCATTTAGTCCTGTCG 57.907 50.000 0.00 0.00 0.00 4.35
2945 3000 5.440685 CATTTAGTCCTGTCGTGTGTTTTC 58.559 41.667 0.00 0.00 0.00 2.29
2990 3045 5.905733 GCAGTCGTATTTGATTCACATGATG 59.094 40.000 0.00 0.00 0.00 3.07
3118 3173 7.544622 AGTTCTGTTGTCTTTTCCTTTTTACC 58.455 34.615 0.00 0.00 0.00 2.85
3130 3185 6.917217 TTCCTTTTTACCGAAACTCGTTAA 57.083 33.333 0.00 0.00 38.40 2.01
3202 3257 5.470437 GCTATGCTACCTTAAGCCCTTTTAG 59.530 44.000 0.00 0.00 42.05 1.85
3205 3260 5.007682 TGCTACCTTAAGCCCTTTTAGTTG 58.992 41.667 0.00 0.00 42.05 3.16
3235 3290 8.955061 ATCATTTGAGTTTGTTTATTCTCGTG 57.045 30.769 0.00 0.00 0.00 4.35
3345 3400 2.664568 TCGGTTCGCGTTCTTTATTCTG 59.335 45.455 5.77 0.00 0.00 3.02
3357 3412 2.418368 TTATTCTGCGCACCCTGAAT 57.582 45.000 21.59 21.59 37.25 2.57
3386 3441 0.758734 CAGCCAGATACGGGGATTGA 59.241 55.000 0.00 0.00 0.00 2.57
3454 3509 0.037447 ACCCTCTCAAAGCTTCTGCC 59.963 55.000 0.00 0.00 40.80 4.85
3459 3514 3.119566 CCTCTCAAAGCTTCTGCCATTTC 60.120 47.826 0.00 0.00 40.80 2.17
3461 3516 1.068333 TCAAAGCTTCTGCCATTTCGC 60.068 47.619 0.00 0.00 40.80 4.70
3462 3517 0.961019 AAAGCTTCTGCCATTTCGCA 59.039 45.000 0.00 0.00 40.80 5.10
3464 3519 1.180029 AGCTTCTGCCATTTCGCAAT 58.820 45.000 0.00 0.00 38.56 3.56
3465 3520 1.135199 AGCTTCTGCCATTTCGCAATG 60.135 47.619 0.34 0.34 38.56 2.82
3467 3522 2.671914 GCTTCTGCCATTTCGCAATGAA 60.672 45.455 9.47 0.00 42.35 2.57
3496 3551 4.342378 AGATGCATCAACGTCTAGTACCAT 59.658 41.667 27.81 0.00 34.11 3.55
3513 3568 7.304497 AGTACCATCTCTGAGTTTTAGTTGT 57.696 36.000 4.32 0.00 0.00 3.32
3515 3570 8.867097 AGTACCATCTCTGAGTTTTAGTTGTTA 58.133 33.333 4.32 0.00 0.00 2.41
3701 3756 6.446318 TGAACCAGCTTGTAAATTTGACATC 58.554 36.000 0.00 0.00 0.00 3.06
3731 3786 1.641192 TCTCTAGCAGTCCCTTCAGGA 59.359 52.381 0.00 0.00 44.91 3.86
3781 3836 1.149711 AGCATCTCTAGCAGATCCCCT 59.850 52.381 0.00 0.00 40.20 4.79
3782 3837 2.381618 AGCATCTCTAGCAGATCCCCTA 59.618 50.000 0.00 0.00 40.20 3.53
3783 3838 3.169099 GCATCTCTAGCAGATCCCCTAA 58.831 50.000 0.00 0.00 40.20 2.69
3828 3889 2.546899 GGGTTTTGGGGAATTAAGCCT 58.453 47.619 0.00 0.00 35.75 4.58
3838 3899 6.975949 TGGGGAATTAAGCCTTATCTAACAA 58.024 36.000 0.00 0.00 0.00 2.83
3936 4075 0.824109 CCACGATACCAAGCTCCAGA 59.176 55.000 0.00 0.00 0.00 3.86
3939 4078 0.824109 CGATACCAAGCTCCAGACCA 59.176 55.000 0.00 0.00 0.00 4.02
3940 4079 1.207089 CGATACCAAGCTCCAGACCAA 59.793 52.381 0.00 0.00 0.00 3.67
3942 4081 1.429930 TACCAAGCTCCAGACCAACA 58.570 50.000 0.00 0.00 0.00 3.33
3943 4082 0.773644 ACCAAGCTCCAGACCAACAT 59.226 50.000 0.00 0.00 0.00 2.71
3947 4086 3.305608 CCAAGCTCCAGACCAACATTTTC 60.306 47.826 0.00 0.00 0.00 2.29
3949 4088 2.108952 AGCTCCAGACCAACATTTTCCT 59.891 45.455 0.00 0.00 0.00 3.36
3950 4089 2.489722 GCTCCAGACCAACATTTTCCTC 59.510 50.000 0.00 0.00 0.00 3.71
3969 4108 3.599285 TTGAAATCGCTCGCCCCGT 62.599 57.895 0.00 0.00 0.00 5.28
3970 4109 3.564027 GAAATCGCTCGCCCCGTG 61.564 66.667 0.00 0.00 0.00 4.94
3982 4121 1.595794 CGCCCCGTGAAACATACATAC 59.404 52.381 0.00 0.00 35.74 2.39
3988 4127 2.933906 CGTGAAACATACATACCGGCTT 59.066 45.455 0.00 0.00 35.74 4.35
3989 4128 3.242284 CGTGAAACATACATACCGGCTTG 60.242 47.826 0.00 1.04 35.74 4.01
3990 4129 2.680841 TGAAACATACATACCGGCTTGC 59.319 45.455 0.00 0.00 0.00 4.01
3991 4130 2.710096 AACATACATACCGGCTTGCT 57.290 45.000 0.00 0.00 0.00 3.91
3992 4131 2.240493 ACATACATACCGGCTTGCTC 57.760 50.000 0.00 0.00 0.00 4.26
3993 4132 1.484653 ACATACATACCGGCTTGCTCA 59.515 47.619 0.00 0.00 0.00 4.26
3994 4133 2.093181 ACATACATACCGGCTTGCTCAA 60.093 45.455 0.00 0.00 0.00 3.02
3995 4134 2.018542 TACATACCGGCTTGCTCAAC 57.981 50.000 0.00 0.00 0.00 3.18
3996 4135 0.036164 ACATACCGGCTTGCTCAACA 59.964 50.000 0.00 0.00 0.00 3.33
3997 4136 1.340017 ACATACCGGCTTGCTCAACAT 60.340 47.619 0.00 0.00 0.00 2.71
3998 4137 2.093181 ACATACCGGCTTGCTCAACATA 60.093 45.455 0.00 0.00 0.00 2.29
3999 4138 2.018542 TACCGGCTTGCTCAACATAC 57.981 50.000 0.00 0.00 0.00 2.39
4000 4139 0.036164 ACCGGCTTGCTCAACATACA 59.964 50.000 0.00 0.00 0.00 2.29
4001 4140 1.340017 ACCGGCTTGCTCAACATACAT 60.340 47.619 0.00 0.00 0.00 2.29
4002 4141 2.093181 ACCGGCTTGCTCAACATACATA 60.093 45.455 0.00 0.00 0.00 2.29
4003 4142 2.287915 CCGGCTTGCTCAACATACATAC 59.712 50.000 0.00 0.00 0.00 2.39
4004 4143 2.287915 CGGCTTGCTCAACATACATACC 59.712 50.000 0.00 0.00 0.00 2.73
4005 4144 2.287915 GGCTTGCTCAACATACATACCG 59.712 50.000 0.00 0.00 0.00 4.02
4006 4145 2.287915 GCTTGCTCAACATACATACCGG 59.712 50.000 0.00 0.00 0.00 5.28
4007 4146 1.948104 TGCTCAACATACATACCGGC 58.052 50.000 0.00 0.00 0.00 6.13
4008 4147 1.484653 TGCTCAACATACATACCGGCT 59.515 47.619 0.00 0.00 0.00 5.52
4009 4148 2.093181 TGCTCAACATACATACCGGCTT 60.093 45.455 0.00 0.00 0.00 4.35
4028 4167 4.423732 GCTTGCTCACAGTGAAAAAGAAA 58.576 39.130 21.40 5.29 0.00 2.52
4030 4169 5.384063 TTGCTCACAGTGAAAAAGAAACA 57.616 34.783 4.41 0.00 0.00 2.83
4038 4177 6.143118 CACAGTGAAAAAGAAACAACGACAAA 59.857 34.615 0.00 0.00 0.00 2.83
4045 4184 3.869065 AGAAACAACGACAAAGGAGTGA 58.131 40.909 0.00 0.00 0.00 3.41
4099 4238 2.356793 CCGCTCGCCATCATCTCC 60.357 66.667 0.00 0.00 0.00 3.71
4103 4242 1.959848 CTCGCCATCATCTCCGCTA 59.040 57.895 0.00 0.00 0.00 4.26
4104 4243 0.315251 CTCGCCATCATCTCCGCTAA 59.685 55.000 0.00 0.00 0.00 3.09
4157 4296 3.764466 CCTCTCCCGCTCGCAACT 61.764 66.667 0.00 0.00 0.00 3.16
4170 4309 2.203538 CAACTGTTGCCCCTGCCT 60.204 61.111 7.70 0.00 36.33 4.75
4171 4310 2.203538 AACTGTTGCCCCTGCCTG 60.204 61.111 0.00 0.00 36.33 4.85
4172 4311 2.766925 AACTGTTGCCCCTGCCTGA 61.767 57.895 0.00 0.00 36.33 3.86
4173 4312 2.115910 CTGTTGCCCCTGCCTGAA 59.884 61.111 0.00 0.00 36.33 3.02
4174 4313 1.304713 CTGTTGCCCCTGCCTGAAT 60.305 57.895 0.00 0.00 36.33 2.57
4177 4316 3.301222 TTGCCCCTGCCTGAATCCC 62.301 63.158 0.00 0.00 36.33 3.85
4178 4317 3.743017 GCCCCTGCCTGAATCCCA 61.743 66.667 0.00 0.00 0.00 4.37
4180 4319 1.622499 CCCCTGCCTGAATCCCAAT 59.378 57.895 0.00 0.00 0.00 3.16
4181 4320 0.031817 CCCCTGCCTGAATCCCAATT 60.032 55.000 0.00 0.00 0.00 2.32
4182 4321 1.406903 CCCTGCCTGAATCCCAATTC 58.593 55.000 0.00 0.00 41.48 2.17
4184 4323 2.625087 CCCTGCCTGAATCCCAATTCTT 60.625 50.000 0.41 0.00 41.63 2.52
4186 4325 3.516700 CCTGCCTGAATCCCAATTCTTTT 59.483 43.478 0.41 0.00 41.63 2.27
4188 4327 4.897140 TGCCTGAATCCCAATTCTTTTTG 58.103 39.130 0.41 0.00 41.63 2.44
4189 4328 4.347583 TGCCTGAATCCCAATTCTTTTTGT 59.652 37.500 0.41 0.00 41.63 2.83
4191 4330 5.163513 CCTGAATCCCAATTCTTTTTGTCG 58.836 41.667 0.41 0.00 41.63 4.35
4192 4331 5.048083 CCTGAATCCCAATTCTTTTTGTCGA 60.048 40.000 0.41 0.00 41.63 4.20
4193 4332 6.350445 CCTGAATCCCAATTCTTTTTGTCGAT 60.350 38.462 0.00 0.00 41.63 3.59
4219 4376 5.393787 CCCAATTCATCAACAGAACATCCAG 60.394 44.000 0.00 0.00 0.00 3.86
4222 4379 3.588955 TCATCAACAGAACATCCAGACG 58.411 45.455 0.00 0.00 0.00 4.18
4263 4433 5.754406 TCCTTTGTTGAATTTCATGTGCAAG 59.246 36.000 0.00 0.00 0.00 4.01
4298 4468 7.936847 AGATTTGGTATTGTAGCATATTTCCGA 59.063 33.333 0.00 0.00 35.91 4.55
4319 4489 6.711194 TCCGAAACAACACTGATTTGGTATTA 59.289 34.615 2.43 0.00 39.09 0.98
4340 4510 2.237392 AGACCCAATGTAGTTCAGAGGC 59.763 50.000 0.00 0.00 0.00 4.70
4356 4526 7.507277 AGTTCAGAGGCTCTCAATACATACATA 59.493 37.037 15.60 0.00 32.06 2.29
4376 4546 0.865111 CAAACGGAGCGTGAATGTCA 59.135 50.000 0.00 0.00 39.99 3.58
4415 4585 1.003718 GCCCTTAGCTGTTCACGGT 60.004 57.895 0.00 0.00 38.99 4.83
4457 4627 3.173599 CACATTGTAGCTTTTGATGCGG 58.826 45.455 0.00 0.00 35.28 5.69
4617 4793 3.310657 GGGATATCCTCCTATGTGGGCTA 60.311 52.174 21.18 0.00 44.28 3.93
4670 4846 0.033920 CCCAAAGAGGTGCAAAAGCC 59.966 55.000 0.00 0.00 34.66 4.35
4678 4854 0.539669 GGTGCAAAAGCCCACTACCT 60.540 55.000 0.00 0.00 32.68 3.08
4679 4855 1.271707 GGTGCAAAAGCCCACTACCTA 60.272 52.381 0.00 0.00 32.68 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.052414 TGAACCCTGATAGTACTGCCCTA 60.052 47.826 5.39 0.00 0.00 3.53
76 77 2.435372 TTCCACCATTATGAGGCACC 57.565 50.000 0.00 0.00 0.00 5.01
117 118 1.816835 ACCTCGCTATCGACAAGAACA 59.183 47.619 0.86 0.00 40.21 3.18
129 130 1.409064 GTCATCATGGACACCTCGCTA 59.591 52.381 0.00 0.00 37.73 4.26
137 138 3.820467 GGTTGACAAAGTCATCATGGACA 59.180 43.478 0.12 0.00 42.40 4.02
141 142 5.471116 TCTTGAGGTTGACAAAGTCATCATG 59.529 40.000 0.12 5.12 42.40 3.07
142 143 5.471456 GTCTTGAGGTTGACAAAGTCATCAT 59.529 40.000 0.12 0.00 42.40 2.45
145 146 5.041191 AGTCTTGAGGTTGACAAAGTCAT 57.959 39.130 0.12 0.00 42.40 3.06
158 159 3.744660 ACTAAGCCAACAAGTCTTGAGG 58.255 45.455 19.53 18.91 34.24 3.86
159 160 5.757850 AAACTAAGCCAACAAGTCTTGAG 57.242 39.130 19.53 10.57 0.00 3.02
204 209 5.715434 AAATTATTGCGGTTACAACACCT 57.285 34.783 0.00 0.00 34.22 4.00
227 232 6.496911 ACCCCTTGTGCTTATATGAAAACTTT 59.503 34.615 0.00 0.00 0.00 2.66
233 238 6.068461 TGTTACCCCTTGTGCTTATATGAA 57.932 37.500 0.00 0.00 0.00 2.57
287 292 0.546598 AAAGTTATAGCCTGCGCCCT 59.453 50.000 4.18 0.55 34.57 5.19
288 293 2.249844 TAAAGTTATAGCCTGCGCCC 57.750 50.000 4.18 0.00 34.57 6.13
289 294 3.003378 CCTTTAAAGTTATAGCCTGCGCC 59.997 47.826 14.03 0.00 34.57 6.53
290 295 3.003378 CCCTTTAAAGTTATAGCCTGCGC 59.997 47.826 14.03 0.00 0.00 6.09
291 296 3.003378 GCCCTTTAAAGTTATAGCCTGCG 59.997 47.826 14.03 0.00 0.00 5.18
292 297 3.951680 TGCCCTTTAAAGTTATAGCCTGC 59.048 43.478 14.03 3.58 0.00 4.85
293 298 4.036852 GCTGCCCTTTAAAGTTATAGCCTG 59.963 45.833 14.03 6.04 0.00 4.85
294 299 4.207955 GCTGCCCTTTAAAGTTATAGCCT 58.792 43.478 14.03 0.00 0.00 4.58
295 300 3.318275 GGCTGCCCTTTAAAGTTATAGCC 59.682 47.826 22.82 22.82 41.01 3.93
296 301 3.318275 GGGCTGCCCTTTAAAGTTATAGC 59.682 47.826 30.42 15.44 41.34 2.97
297 302 3.889538 GGGGCTGCCCTTTAAAGTTATAG 59.110 47.826 34.99 7.77 44.66 1.31
298 303 3.269906 TGGGGCTGCCCTTTAAAGTTATA 59.730 43.478 34.99 6.46 44.66 0.98
299 304 2.043801 TGGGGCTGCCCTTTAAAGTTAT 59.956 45.455 34.99 0.00 44.66 1.89
300 305 1.429687 TGGGGCTGCCCTTTAAAGTTA 59.570 47.619 34.99 9.37 44.66 2.24
301 306 0.189822 TGGGGCTGCCCTTTAAAGTT 59.810 50.000 34.99 0.00 44.66 2.66
302 307 0.251787 CTGGGGCTGCCCTTTAAAGT 60.252 55.000 34.99 0.00 44.66 2.66
303 308 0.251787 ACTGGGGCTGCCCTTTAAAG 60.252 55.000 34.99 24.56 44.66 1.85
304 309 0.541764 CACTGGGGCTGCCCTTTAAA 60.542 55.000 34.99 15.77 44.66 1.52
305 310 1.076549 CACTGGGGCTGCCCTTTAA 59.923 57.895 34.99 18.11 44.66 1.52
306 311 2.763215 CACTGGGGCTGCCCTTTA 59.237 61.111 34.99 20.90 44.66 1.85
311 316 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
312 317 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
313 318 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
314 319 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
315 320 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
316 321 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
317 322 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
318 323 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
319 324 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
331 336 2.088674 ATAGCCTACGCAAGCGGGAG 62.089 60.000 19.30 14.35 44.69 4.30
332 337 0.824595 TATAGCCTACGCAAGCGGGA 60.825 55.000 19.30 5.32 44.69 5.14
333 338 0.032952 TTATAGCCTACGCAAGCGGG 59.967 55.000 19.30 11.98 44.69 6.13
334 339 1.137513 GTTATAGCCTACGCAAGCGG 58.862 55.000 19.30 2.08 44.69 5.52
335 340 2.135664 AGTTATAGCCTACGCAAGCG 57.864 50.000 13.50 13.50 46.03 4.68
336 341 3.869246 TCAAAGTTATAGCCTACGCAAGC 59.131 43.478 0.00 0.00 45.62 4.01
337 342 6.418760 TGCTCAAAGTTATAGCCTACGCAAG 61.419 44.000 6.85 0.00 38.38 4.01
338 343 3.869246 GCTCAAAGTTATAGCCTACGCAA 59.131 43.478 0.00 0.00 37.52 4.85
339 344 3.118920 TGCTCAAAGTTATAGCCTACGCA 60.119 43.478 6.85 0.00 37.52 5.24
340 345 3.454375 TGCTCAAAGTTATAGCCTACGC 58.546 45.455 6.85 0.00 35.33 4.42
341 346 5.109903 AGTTGCTCAAAGTTATAGCCTACG 58.890 41.667 6.85 0.00 35.33 3.51
342 347 8.488651 TTTAGTTGCTCAAAGTTATAGCCTAC 57.511 34.615 6.85 5.66 35.33 3.18
343 348 9.681062 AATTTAGTTGCTCAAAGTTATAGCCTA 57.319 29.630 6.85 1.03 35.33 3.93
432 437 3.944055 TGACTTCTAGGTCTGCTTCAC 57.056 47.619 0.00 0.00 37.16 3.18
439 444 3.655615 AGGTCGATGACTTCTAGGTCT 57.344 47.619 0.00 0.00 37.16 3.85
444 449 7.710907 CCATAATTTCAAGGTCGATGACTTCTA 59.289 37.037 0.00 0.00 32.47 2.10
451 456 3.004734 GGCCCATAATTTCAAGGTCGATG 59.995 47.826 0.00 0.00 0.00 3.84
477 482 2.631062 ACGTTACTCATTGGGACACTGA 59.369 45.455 0.00 0.00 45.69 3.41
484 489 1.997606 GGACGAACGTTACTCATTGGG 59.002 52.381 0.00 0.00 0.00 4.12
488 493 3.518590 GGAATGGACGAACGTTACTCAT 58.481 45.455 0.00 0.37 0.00 2.90
489 494 2.353011 GGGAATGGACGAACGTTACTCA 60.353 50.000 0.00 0.00 0.00 3.41
490 495 2.265683 GGGAATGGACGAACGTTACTC 58.734 52.381 0.00 0.00 0.00 2.59
491 496 1.619827 TGGGAATGGACGAACGTTACT 59.380 47.619 0.00 0.00 0.00 2.24
506 511 2.759839 ATGACATGCCATGATGGGAA 57.240 45.000 10.43 0.00 42.59 3.97
515 520 1.269174 CACCGTTTGAATGACATGCCA 59.731 47.619 0.00 0.00 0.00 4.92
517 522 2.987413 TCACCGTTTGAATGACATGC 57.013 45.000 0.00 0.00 0.00 4.06
527 532 4.749245 AAACTATGAGCTTCACCGTTTG 57.251 40.909 0.00 0.00 33.63 2.93
528 533 4.392138 GCTAAACTATGAGCTTCACCGTTT 59.608 41.667 13.64 13.64 36.61 3.60
530 535 3.195825 AGCTAAACTATGAGCTTCACCGT 59.804 43.478 0.00 0.00 46.99 4.83
531 536 3.786635 AGCTAAACTATGAGCTTCACCG 58.213 45.455 0.00 0.00 46.99 4.94
532 537 5.235401 GCTTAGCTAAACTATGAGCTTCACC 59.765 44.000 7.74 0.00 46.99 4.02
534 539 5.977635 TGCTTAGCTAAACTATGAGCTTCA 58.022 37.500 7.74 0.00 46.99 3.02
535 540 6.565623 GCATGCTTAGCTAAACTATGAGCTTC 60.566 42.308 20.08 5.80 46.99 3.86
539 544 5.757320 AGTGCATGCTTAGCTAAACTATGAG 59.243 40.000 20.33 5.53 0.00 2.90
540 545 5.674525 AGTGCATGCTTAGCTAAACTATGA 58.325 37.500 20.33 8.87 0.00 2.15
541 546 5.757320 AGAGTGCATGCTTAGCTAAACTATG 59.243 40.000 20.33 12.35 0.00 2.23
542 547 5.923204 AGAGTGCATGCTTAGCTAAACTAT 58.077 37.500 20.33 5.55 0.00 2.12
544 549 4.081198 AGAGAGTGCATGCTTAGCTAAACT 60.081 41.667 20.33 11.03 0.00 2.66
545 550 4.187694 AGAGAGTGCATGCTTAGCTAAAC 58.812 43.478 20.33 5.81 0.00 2.01
546 551 4.161189 AGAGAGAGTGCATGCTTAGCTAAA 59.839 41.667 20.33 0.00 0.00 1.85
550 555 2.472816 GAGAGAGAGTGCATGCTTAGC 58.527 52.381 20.33 0.00 0.00 3.09
551 556 2.543445 CCGAGAGAGAGTGCATGCTTAG 60.543 54.545 20.33 0.00 0.00 2.18
552 557 1.406898 CCGAGAGAGAGTGCATGCTTA 59.593 52.381 20.33 0.00 0.00 3.09
554 559 0.969917 ACCGAGAGAGAGTGCATGCT 60.970 55.000 20.33 0.00 0.00 3.79
555 560 0.805322 CACCGAGAGAGAGTGCATGC 60.805 60.000 11.82 11.82 0.00 4.06
556 561 3.342395 CACCGAGAGAGAGTGCATG 57.658 57.895 0.00 0.00 0.00 4.06
560 565 3.579685 TCGCACCGAGAGAGAGTG 58.420 61.111 0.00 0.00 34.58 3.51
575 580 1.447838 AACTACATGTGGCGCCTCG 60.448 57.895 29.70 14.72 0.00 4.63
576 581 1.369091 CCAACTACATGTGGCGCCTC 61.369 60.000 29.70 25.38 0.00 4.70
577 582 1.377202 CCAACTACATGTGGCGCCT 60.377 57.895 29.70 9.54 0.00 5.52
578 583 3.051392 GCCAACTACATGTGGCGCC 62.051 63.158 22.73 22.73 34.79 6.53
579 584 0.742990 TAGCCAACTACATGTGGCGC 60.743 55.000 16.80 12.39 43.08 6.53
580 585 1.665679 CTTAGCCAACTACATGTGGCG 59.334 52.381 16.80 5.94 43.08 5.69
595 600 4.757149 ACAATTCGGATTATGAGGCTTAGC 59.243 41.667 0.00 0.00 0.00 3.09
596 601 7.278868 GGATACAATTCGGATTATGAGGCTTAG 59.721 40.741 0.00 0.00 0.00 2.18
597 602 7.103641 GGATACAATTCGGATTATGAGGCTTA 58.896 38.462 0.00 0.00 0.00 3.09
598 603 5.940470 GGATACAATTCGGATTATGAGGCTT 59.060 40.000 0.00 0.00 0.00 4.35
599 604 5.491982 GGATACAATTCGGATTATGAGGCT 58.508 41.667 0.00 0.00 0.00 4.58
600 605 4.636206 GGGATACAATTCGGATTATGAGGC 59.364 45.833 0.00 0.00 39.74 4.70
601 606 5.643777 GTGGGATACAATTCGGATTATGAGG 59.356 44.000 0.00 0.00 39.74 3.86
602 607 6.467677 AGTGGGATACAATTCGGATTATGAG 58.532 40.000 0.00 0.00 39.74 2.90
603 608 6.433847 AGTGGGATACAATTCGGATTATGA 57.566 37.500 0.00 0.00 39.74 2.15
604 609 5.643777 GGAGTGGGATACAATTCGGATTATG 59.356 44.000 0.00 0.00 39.74 1.90
605 610 5.309543 TGGAGTGGGATACAATTCGGATTAT 59.690 40.000 0.00 0.00 39.74 1.28
606 611 4.656575 TGGAGTGGGATACAATTCGGATTA 59.343 41.667 0.00 0.00 39.74 1.75
607 612 3.458118 TGGAGTGGGATACAATTCGGATT 59.542 43.478 0.00 0.00 39.74 3.01
608 613 3.045634 TGGAGTGGGATACAATTCGGAT 58.954 45.455 0.00 0.00 39.74 4.18
609 614 2.473070 TGGAGTGGGATACAATTCGGA 58.527 47.619 0.00 0.00 39.74 4.55
610 615 3.492102 ATGGAGTGGGATACAATTCGG 57.508 47.619 0.00 0.00 39.74 4.30
611 616 4.937620 CCATATGGAGTGGGATACAATTCG 59.062 45.833 17.49 0.00 37.39 3.34
612 617 6.126863 TCCATATGGAGTGGGATACAATTC 57.873 41.667 20.98 0.00 39.78 2.17
631 636 9.750783 AGCTAAGCTTTATTGATCATAATCCAT 57.249 29.630 3.20 0.00 33.89 3.41
669 674 9.603921 CCTAATAAACATTCATGGCAAATCTTT 57.396 29.630 0.00 0.00 0.00 2.52
670 675 8.980596 TCCTAATAAACATTCATGGCAAATCTT 58.019 29.630 0.00 0.00 0.00 2.40
694 699 8.997621 TTTACACAGACATGTTAGTATCTTCC 57.002 34.615 0.00 0.00 37.65 3.46
702 707 9.180678 GACCAAAATTTTACACAGACATGTTAG 57.819 33.333 2.44 0.00 37.65 2.34
704 709 7.551585 TGACCAAAATTTTACACAGACATGTT 58.448 30.769 2.44 0.00 37.65 2.71
706 711 7.424803 TCTGACCAAAATTTTACACAGACATG 58.575 34.615 19.55 0.00 0.00 3.21
711 716 6.291585 GCGTTTCTGACCAAAATTTTACACAG 60.292 38.462 16.96 16.96 0.00 3.66
768 773 9.191995 CCAAACACATTTTTCTAATACTTCCAC 57.808 33.333 0.00 0.00 0.00 4.02
781 786 5.816777 CAGACATCCAACCAAACACATTTTT 59.183 36.000 0.00 0.00 0.00 1.94
786 791 2.305928 CCAGACATCCAACCAAACACA 58.694 47.619 0.00 0.00 0.00 3.72
789 794 0.603065 GCCCAGACATCCAACCAAAC 59.397 55.000 0.00 0.00 0.00 2.93
790 795 0.541764 GGCCCAGACATCCAACCAAA 60.542 55.000 0.00 0.00 0.00 3.28
791 796 1.076549 GGCCCAGACATCCAACCAA 59.923 57.895 0.00 0.00 0.00 3.67
792 797 1.852157 AGGCCCAGACATCCAACCA 60.852 57.895 0.00 0.00 0.00 3.67
793 798 1.379044 CAGGCCCAGACATCCAACC 60.379 63.158 0.00 0.00 0.00 3.77
794 799 0.393537 CTCAGGCCCAGACATCCAAC 60.394 60.000 0.00 0.00 0.00 3.77
795 800 0.547471 TCTCAGGCCCAGACATCCAA 60.547 55.000 0.00 0.00 0.00 3.53
796 801 0.547471 TTCTCAGGCCCAGACATCCA 60.547 55.000 0.00 0.00 0.00 3.41
797 802 0.620556 TTTCTCAGGCCCAGACATCC 59.379 55.000 0.00 0.00 0.00 3.51
798 803 2.489722 GTTTTTCTCAGGCCCAGACATC 59.510 50.000 0.00 0.00 0.00 3.06
799 804 2.519013 GTTTTTCTCAGGCCCAGACAT 58.481 47.619 0.00 0.00 0.00 3.06
800 805 1.813862 CGTTTTTCTCAGGCCCAGACA 60.814 52.381 0.00 0.00 0.00 3.41
801 806 0.875059 CGTTTTTCTCAGGCCCAGAC 59.125 55.000 0.00 0.00 0.00 3.51
802 807 0.472471 ACGTTTTTCTCAGGCCCAGA 59.528 50.000 0.00 0.00 0.00 3.86
803 808 2.076863 CTACGTTTTTCTCAGGCCCAG 58.923 52.381 0.00 0.00 0.00 4.45
804 809 1.695242 TCTACGTTTTTCTCAGGCCCA 59.305 47.619 0.00 0.00 0.00 5.36
805 810 2.074576 GTCTACGTTTTTCTCAGGCCC 58.925 52.381 0.00 0.00 0.00 5.80
806 811 2.994578 GAGTCTACGTTTTTCTCAGGCC 59.005 50.000 0.00 0.00 0.00 5.19
807 812 3.650139 TGAGTCTACGTTTTTCTCAGGC 58.350 45.455 0.00 0.00 32.49 4.85
808 813 5.047847 TGTTGAGTCTACGTTTTTCTCAGG 58.952 41.667 0.00 0.00 36.68 3.86
809 814 6.583912 TTGTTGAGTCTACGTTTTTCTCAG 57.416 37.500 0.00 0.00 36.68 3.35
810 815 6.971527 TTTGTTGAGTCTACGTTTTTCTCA 57.028 33.333 0.00 0.60 34.08 3.27
811 816 7.238571 TGTTTTGTTGAGTCTACGTTTTTCTC 58.761 34.615 0.00 0.00 0.00 2.87
812 817 7.136289 TGTTTTGTTGAGTCTACGTTTTTCT 57.864 32.000 0.00 0.00 0.00 2.52
813 818 7.483691 ACATGTTTTGTTGAGTCTACGTTTTTC 59.516 33.333 0.00 0.00 33.74 2.29
814 819 7.309920 ACATGTTTTGTTGAGTCTACGTTTTT 58.690 30.769 0.00 0.00 33.74 1.94
815 820 6.848451 ACATGTTTTGTTGAGTCTACGTTTT 58.152 32.000 0.00 0.00 33.74 2.43
816 821 6.431198 ACATGTTTTGTTGAGTCTACGTTT 57.569 33.333 0.00 0.00 33.74 3.60
817 822 7.724305 ATACATGTTTTGTTGAGTCTACGTT 57.276 32.000 2.30 0.00 39.87 3.99
818 823 7.439955 TGAATACATGTTTTGTTGAGTCTACGT 59.560 33.333 2.30 0.00 39.87 3.57
819 824 7.792925 TGAATACATGTTTTGTTGAGTCTACG 58.207 34.615 2.30 0.00 39.87 3.51
820 825 9.944663 TTTGAATACATGTTTTGTTGAGTCTAC 57.055 29.630 2.30 0.00 39.87 2.59
834 839 9.405587 CCGTGTTTTCTTATTTTGAATACATGT 57.594 29.630 2.69 2.69 38.98 3.21
835 840 9.405587 ACCGTGTTTTCTTATTTTGAATACATG 57.594 29.630 0.00 0.00 39.63 3.21
836 841 9.974980 AACCGTGTTTTCTTATTTTGAATACAT 57.025 25.926 0.00 0.00 37.57 2.29
837 842 9.804758 AAACCGTGTTTTCTTATTTTGAATACA 57.195 25.926 0.00 0.00 34.66 2.29
839 844 9.250624 CCAAACCGTGTTTTCTTATTTTGAATA 57.749 29.630 0.03 0.00 0.00 1.75
840 845 7.982354 TCCAAACCGTGTTTTCTTATTTTGAAT 59.018 29.630 0.03 0.00 0.00 2.57
1200 1205 1.870580 CGATAAAATAGGCGGGCGTGA 60.871 52.381 0.00 0.00 0.00 4.35
1202 1207 0.105408 ACGATAAAATAGGCGGGCGT 59.895 50.000 0.00 0.00 0.00 5.68
1203 1208 2.068837 TACGATAAAATAGGCGGGCG 57.931 50.000 0.00 0.00 0.00 6.13
1205 1210 7.172019 ACAGTAAAATACGATAAAATAGGCGGG 59.828 37.037 0.00 0.00 0.00 6.13
1207 1212 9.999883 GTACAGTAAAATACGATAAAATAGGCG 57.000 33.333 0.00 0.00 0.00 5.52
1229 1235 1.876799 CGCACCATGGAAAACAGTACA 59.123 47.619 21.47 0.00 0.00 2.90
1230 1236 1.401018 GCGCACCATGGAAAACAGTAC 60.401 52.381 21.47 0.00 0.00 2.73
1332 1342 1.113517 CGACATGGTATCCCTCCCGT 61.114 60.000 0.00 0.00 0.00 5.28
1368 1378 1.657487 ACGAGCACGACAAGACACG 60.657 57.895 11.40 0.00 42.66 4.49
1520 1530 9.434420 AGCAGAGAATCAATTTATCTGTATAGC 57.566 33.333 10.57 0.00 36.79 2.97
1523 1533 7.718314 TGCAGCAGAGAATCAATTTATCTGTAT 59.282 33.333 10.57 0.03 36.79 2.29
1567 1577 8.925700 GGACAAAATAAAGAATGAACATGAACC 58.074 33.333 0.00 0.00 0.00 3.62
1568 1578 9.696917 AGGACAAAATAAAGAATGAACATGAAC 57.303 29.630 0.00 0.00 0.00 3.18
1597 1615 2.002586 CGCTGAATACAAGTCCCACAG 58.997 52.381 0.00 0.00 0.00 3.66
1691 1709 2.030562 AGACACCCAACCGAAGCG 59.969 61.111 0.00 0.00 0.00 4.68
1697 1715 1.067060 GAAGCAAACAGACACCCAACC 59.933 52.381 0.00 0.00 0.00 3.77
1747 1765 8.911918 TTTCTTTAGCAGTCTGGTTTTACATA 57.088 30.769 10.32 0.00 0.00 2.29
1748 1766 7.817418 TTTCTTTAGCAGTCTGGTTTTACAT 57.183 32.000 10.32 0.00 0.00 2.29
1762 1781 6.625740 GCTGTTGCCTATGAATTTCTTTAGCA 60.626 38.462 0.00 2.22 0.00 3.49
1789 1808 0.034670 AGGCTTCAAGACAGGCATCC 60.035 55.000 0.00 0.00 39.31 3.51
1829 1848 6.638468 GCTTCAAACTTCTTAATTGACCTGTG 59.362 38.462 0.00 0.00 33.13 3.66
1951 1970 3.321968 CGTACTCATCAATCCCATCCTCA 59.678 47.826 0.00 0.00 0.00 3.86
2089 2109 5.047092 TCTGCATCACTCTGAAAGTCACATA 60.047 40.000 0.00 0.00 35.45 2.29
2090 2110 4.001652 CTGCATCACTCTGAAAGTCACAT 58.998 43.478 0.00 0.00 35.45 3.21
2174 2194 2.608368 CCACCCGGGAAGGTACCA 60.608 66.667 32.02 0.00 38.39 3.25
2266 2287 8.743099 GTTCAAAATAGGTTGAGAAAAAGTTCG 58.257 33.333 0.00 0.00 38.69 3.95
2280 2301 5.708230 TCCGCAACAATAGTTCAAAATAGGT 59.292 36.000 0.00 0.00 35.28 3.08
2286 2307 5.218885 CAATGTCCGCAACAATAGTTCAAA 58.781 37.500 0.00 0.00 42.37 2.69
2373 2396 1.279271 GCACCTAGACACCTGACCAAT 59.721 52.381 0.00 0.00 0.00 3.16
2375 2398 1.532604 CGCACCTAGACACCTGACCA 61.533 60.000 0.00 0.00 0.00 4.02
2377 2400 0.388649 CACGCACCTAGACACCTGAC 60.389 60.000 0.00 0.00 0.00 3.51
2467 2518 6.067217 AGCTACTACAACCAAGAAATCCAT 57.933 37.500 0.00 0.00 0.00 3.41
2655 2709 6.820152 CACATCAATTTCTGACACTGGAGATA 59.180 38.462 0.00 0.00 36.69 1.98
2677 2731 2.203640 AGTGCCTCCTCGGACACA 60.204 61.111 8.76 0.00 40.23 3.72
2775 2829 7.148356 TGCATGAAGTGAATACTAAAGCAAGAG 60.148 37.037 0.00 0.00 35.69 2.85
2835 2889 5.606348 AAGTAAACAAACTGCAATGGGAA 57.394 34.783 0.00 0.00 0.00 3.97
2936 2991 5.738619 ATAAATGGAAGGGGAAAACACAC 57.261 39.130 0.00 0.00 0.00 3.82
2945 3000 4.650588 TGCATGAAGAATAAATGGAAGGGG 59.349 41.667 0.00 0.00 0.00 4.79
2990 3045 1.363744 AAAGCGCTGCTACACATCTC 58.636 50.000 12.58 0.00 38.25 2.75
3102 3157 5.905733 CGAGTTTCGGTAAAAAGGAAAAGAC 59.094 40.000 0.00 0.00 36.00 3.01
3118 3173 8.649841 TGTACCAAAGATAATTAACGAGTTTCG 58.350 33.333 0.00 0.00 46.93 3.46
3130 3185 9.136323 GAAATCCATCCTTGTACCAAAGATAAT 57.864 33.333 0.00 0.00 0.00 1.28
3345 3400 0.530870 GTAGGAGATTCAGGGTGCGC 60.531 60.000 0.00 0.00 0.00 6.09
3357 3412 2.311463 GTATCTGGCTGCTGTAGGAGA 58.689 52.381 4.48 0.00 35.31 3.71
3386 3441 4.291047 CTGCGTCAAGGACAGCAT 57.709 55.556 13.27 0.00 39.61 3.79
3416 3471 2.889045 GGTTTTGACAGGAAGGTTACCC 59.111 50.000 0.00 0.00 0.00 3.69
3417 3472 2.889045 GGGTTTTGACAGGAAGGTTACC 59.111 50.000 0.00 0.00 0.00 2.85
3473 3528 3.699538 TGGTACTAGACGTTGATGCATCT 59.300 43.478 26.32 9.30 0.00 2.90
3478 3533 5.297029 TCAGAGATGGTACTAGACGTTGATG 59.703 44.000 0.00 0.00 0.00 3.07
3482 3537 4.846040 ACTCAGAGATGGTACTAGACGTT 58.154 43.478 3.79 0.00 0.00 3.99
3485 3540 8.283699 ACTAAAACTCAGAGATGGTACTAGAC 57.716 38.462 3.79 0.00 0.00 2.59
3487 3542 8.524487 ACAACTAAAACTCAGAGATGGTACTAG 58.476 37.037 3.79 0.00 0.00 2.57
3488 3543 8.418597 ACAACTAAAACTCAGAGATGGTACTA 57.581 34.615 3.79 0.00 0.00 1.82
3496 3551 8.248253 TGCGATATAACAACTAAAACTCAGAGA 58.752 33.333 3.79 0.00 0.00 3.10
3513 3568 3.306989 CCCAGATGCTTCCTGCGATATAA 60.307 47.826 0.00 0.00 46.63 0.98
3515 3570 1.002888 CCCAGATGCTTCCTGCGATAT 59.997 52.381 0.00 0.00 46.63 1.63
3595 3650 2.200067 CACAGCTTCTTGGCTATCTCG 58.800 52.381 0.00 0.00 41.00 4.04
3599 3654 0.394899 GCCCACAGCTTCTTGGCTAT 60.395 55.000 6.15 0.00 41.00 2.97
3601 3656 2.282745 GCCCACAGCTTCTTGGCT 60.283 61.111 6.15 0.00 44.10 4.75
3701 3756 3.304391 GGACTGCTAGAGATGCTCTAACG 60.304 52.174 5.75 2.03 41.74 3.18
3731 3786 9.173021 TGTATCGTTCCAATTTTATCAGATGTT 57.827 29.630 0.00 0.00 0.00 2.71
3737 3792 7.224753 GCTCTCTGTATCGTTCCAATTTTATCA 59.775 37.037 0.00 0.00 0.00 2.15
3804 3859 3.073209 GCTTAATTCCCCAAAACCCCAAA 59.927 43.478 0.00 0.00 0.00 3.28
3807 3868 1.557832 GGCTTAATTCCCCAAAACCCC 59.442 52.381 0.00 0.00 0.00 4.95
3808 3869 2.546899 AGGCTTAATTCCCCAAAACCC 58.453 47.619 0.00 0.00 0.00 4.11
3947 4086 1.432270 GGGCGAGCGATTTCAAGAGG 61.432 60.000 0.00 0.00 0.00 3.69
3949 4088 1.449601 GGGGCGAGCGATTTCAAGA 60.450 57.895 0.00 0.00 0.00 3.02
3950 4089 2.813179 CGGGGCGAGCGATTTCAAG 61.813 63.158 0.00 0.00 0.00 3.02
3969 4108 2.680841 GCAAGCCGGTATGTATGTTTCA 59.319 45.455 1.90 0.00 0.00 2.69
3970 4109 2.943033 AGCAAGCCGGTATGTATGTTTC 59.057 45.455 1.90 0.00 0.00 2.78
3982 4121 1.382522 ATGTATGTTGAGCAAGCCGG 58.617 50.000 0.00 0.00 0.00 6.13
3988 4127 1.484653 AGCCGGTATGTATGTTGAGCA 59.515 47.619 1.90 0.00 0.00 4.26
3989 4128 2.240493 AGCCGGTATGTATGTTGAGC 57.760 50.000 1.90 0.00 0.00 4.26
3990 4129 2.287915 GCAAGCCGGTATGTATGTTGAG 59.712 50.000 1.90 0.00 0.00 3.02
3991 4130 2.093181 AGCAAGCCGGTATGTATGTTGA 60.093 45.455 1.90 0.00 0.00 3.18
3992 4131 2.287915 GAGCAAGCCGGTATGTATGTTG 59.712 50.000 1.90 0.00 0.00 3.33
3993 4132 2.093181 TGAGCAAGCCGGTATGTATGTT 60.093 45.455 1.90 0.00 0.00 2.71
3994 4133 1.484653 TGAGCAAGCCGGTATGTATGT 59.515 47.619 1.90 0.00 0.00 2.29
3995 4134 1.867233 GTGAGCAAGCCGGTATGTATG 59.133 52.381 1.90 0.00 0.00 2.39
3996 4135 1.484653 TGTGAGCAAGCCGGTATGTAT 59.515 47.619 1.90 0.00 0.00 2.29
3997 4136 0.899019 TGTGAGCAAGCCGGTATGTA 59.101 50.000 1.90 0.00 0.00 2.29
3998 4137 0.391661 CTGTGAGCAAGCCGGTATGT 60.392 55.000 1.90 0.00 0.00 2.29
3999 4138 0.391661 ACTGTGAGCAAGCCGGTATG 60.392 55.000 1.90 3.46 0.00 2.39
4000 4139 0.391661 CACTGTGAGCAAGCCGGTAT 60.392 55.000 1.90 0.00 0.00 2.73
4001 4140 1.005037 CACTGTGAGCAAGCCGGTA 60.005 57.895 1.90 0.00 0.00 4.02
4002 4141 2.281070 CACTGTGAGCAAGCCGGT 60.281 61.111 1.90 0.00 0.00 5.28
4003 4142 1.165907 TTTCACTGTGAGCAAGCCGG 61.166 55.000 10.77 0.00 0.00 6.13
4004 4143 0.662619 TTTTCACTGTGAGCAAGCCG 59.337 50.000 10.77 0.00 0.00 5.52
4005 4144 2.358898 TCTTTTTCACTGTGAGCAAGCC 59.641 45.455 18.98 0.00 0.00 4.35
4006 4145 3.698029 TCTTTTTCACTGTGAGCAAGC 57.302 42.857 18.98 0.00 0.00 4.01
4007 4146 5.401550 TGTTTCTTTTTCACTGTGAGCAAG 58.598 37.500 18.22 18.22 0.00 4.01
4008 4147 5.384063 TGTTTCTTTTTCACTGTGAGCAA 57.616 34.783 10.77 5.59 0.00 3.91
4009 4148 5.160641 GTTGTTTCTTTTTCACTGTGAGCA 58.839 37.500 10.77 0.00 0.00 4.26
4028 4167 1.485066 AGGTCACTCCTTTGTCGTTGT 59.515 47.619 0.00 0.00 45.67 3.32
4045 4184 0.394625 GTGGTCGAGCTCCTAGAGGT 60.395 60.000 16.64 0.00 43.43 3.85
4048 4187 0.743701 GTCGTGGTCGAGCTCCTAGA 60.744 60.000 16.64 2.61 46.96 2.43
4099 4238 2.710297 CCGAGCAGGAAACGATTAGCG 61.710 57.143 0.00 0.00 45.00 4.26
4103 4242 1.298859 GCACCGAGCAGGAAACGATT 61.299 55.000 5.19 0.00 45.00 3.34
4104 4243 1.741770 GCACCGAGCAGGAAACGAT 60.742 57.895 5.19 0.00 45.00 3.73
4157 4296 1.304381 GATTCAGGCAGGGGCAACA 60.304 57.895 0.00 0.00 43.71 3.33
4166 4305 4.347583 ACAAAAAGAATTGGGATTCAGGCA 59.652 37.500 2.41 0.00 43.35 4.75
4167 4306 4.898320 ACAAAAAGAATTGGGATTCAGGC 58.102 39.130 2.41 0.00 43.35 4.85
4168 4307 5.048083 TCGACAAAAAGAATTGGGATTCAGG 60.048 40.000 2.41 0.00 43.35 3.86
4170 4309 6.588719 ATCGACAAAAAGAATTGGGATTCA 57.411 33.333 0.00 0.00 43.35 2.57
4171 4310 6.972901 GGTATCGACAAAAAGAATTGGGATTC 59.027 38.462 0.00 0.00 41.63 2.52
4172 4311 6.127451 GGGTATCGACAAAAAGAATTGGGATT 60.127 38.462 0.00 0.00 34.56 3.01
4173 4312 5.359860 GGGTATCGACAAAAAGAATTGGGAT 59.640 40.000 0.00 0.00 34.56 3.85
4174 4313 4.703093 GGGTATCGACAAAAAGAATTGGGA 59.297 41.667 0.00 0.00 34.56 4.37
4177 4316 7.812191 TGAATTGGGTATCGACAAAAAGAATTG 59.188 33.333 0.00 0.00 36.37 2.32
4178 4317 7.891561 TGAATTGGGTATCGACAAAAAGAATT 58.108 30.769 0.00 0.00 0.00 2.17
4180 4319 6.885952 TGAATTGGGTATCGACAAAAAGAA 57.114 33.333 0.00 0.00 0.00 2.52
4181 4320 6.657117 TGATGAATTGGGTATCGACAAAAAGA 59.343 34.615 0.00 0.00 0.00 2.52
4182 4321 6.851609 TGATGAATTGGGTATCGACAAAAAG 58.148 36.000 0.00 0.00 0.00 2.27
4184 4323 6.207614 TGTTGATGAATTGGGTATCGACAAAA 59.792 34.615 0.00 0.00 40.46 2.44
4186 4325 5.249420 TGTTGATGAATTGGGTATCGACAA 58.751 37.500 0.00 0.00 40.46 3.18
4188 4327 5.116180 TCTGTTGATGAATTGGGTATCGAC 58.884 41.667 0.00 0.00 36.30 4.20
4189 4328 5.351948 TCTGTTGATGAATTGGGTATCGA 57.648 39.130 0.00 0.00 0.00 3.59
4191 4330 6.757897 TGTTCTGTTGATGAATTGGGTATC 57.242 37.500 0.00 0.00 0.00 2.24
4192 4331 6.322201 GGATGTTCTGTTGATGAATTGGGTAT 59.678 38.462 0.00 0.00 0.00 2.73
4193 4332 5.652014 GGATGTTCTGTTGATGAATTGGGTA 59.348 40.000 0.00 0.00 0.00 3.69
4219 4376 3.181500 GGAGGCAATACCAATTTCACGTC 60.181 47.826 0.00 0.00 43.14 4.34
4222 4379 5.170748 CAAAGGAGGCAATACCAATTTCAC 58.829 41.667 0.00 0.00 43.14 3.18
4263 4433 7.973388 TGCTACAATACCAAATCTATTGTTTGC 59.027 33.333 8.64 12.41 40.42 3.68
4295 4465 3.708563 ACCAAATCAGTGTTGTTTCGG 57.291 42.857 0.00 0.00 0.00 4.30
4319 4489 2.237392 GCCTCTGAACTACATTGGGTCT 59.763 50.000 0.00 0.00 0.00 3.85
4331 4501 5.907207 TGTATGTATTGAGAGCCTCTGAAC 58.093 41.667 0.00 0.00 0.00 3.18
4340 4510 7.096023 GCTCCGTTTGTATGTATGTATTGAGAG 60.096 40.741 0.00 0.00 0.00 3.20
4356 4526 0.865769 GACATTCACGCTCCGTTTGT 59.134 50.000 0.00 0.00 38.32 2.83
4376 4546 4.142093 GGCCAAAACACTCAGATATGCAAT 60.142 41.667 0.00 0.00 0.00 3.56
4415 4585 3.055458 TGTCGATTGATTCAAGGCTGGTA 60.055 43.478 5.21 0.00 0.00 3.25
4457 4627 6.649141 TGGTACAAATCAGTGTCAATCACTAC 59.351 38.462 0.00 0.00 46.35 2.73
4617 4793 7.139287 AGTCTTCAAATGATCATCTCCTCAT 57.861 36.000 9.06 0.00 33.59 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.