Multiple sequence alignment - TraesCS5A01G185800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G185800 chr5A 100.000 4903 0 0 1 4903 386168621 386163719 0.000000e+00 9055.0
1 TraesCS5A01G185800 chr5A 98.039 51 0 1 2885 2934 386165687 386165637 2.430000e-13 87.9
2 TraesCS5A01G185800 chr5A 98.039 51 0 1 2935 2985 386165737 386165688 2.430000e-13 87.9
3 TraesCS5A01G185800 chr5D 93.110 3556 152 41 1404 4899 293168105 293164583 0.000000e+00 5123.0
4 TraesCS5A01G185800 chr5D 93.658 473 17 6 938 1407 293168641 293168179 0.000000e+00 695.0
5 TraesCS5A01G185800 chr5D 81.818 396 50 9 267 650 293169372 293168987 3.680000e-81 313.0
6 TraesCS5A01G185800 chr5D 94.805 77 4 0 1962 2038 556285495 556285419 2.400000e-23 121.0
7 TraesCS5A01G185800 chr5D 98.039 51 0 1 2885 2934 293166552 293166502 2.430000e-13 87.9
8 TraesCS5A01G185800 chr5D 96.078 51 1 1 2935 2985 293166602 293166553 1.130000e-11 82.4
9 TraesCS5A01G185800 chr5B 96.623 1540 24 7 1404 2934 334687710 334686190 0.000000e+00 2531.0
10 TraesCS5A01G185800 chr5B 93.725 1482 71 11 2935 4414 334686239 334684778 0.000000e+00 2202.0
11 TraesCS5A01G185800 chr5B 93.446 473 16 3 938 1407 334688244 334687784 0.000000e+00 688.0
12 TraesCS5A01G185800 chr5B 91.757 461 18 5 4456 4899 334684476 334684019 1.500000e-174 623.0
13 TraesCS5A01G185800 chr5B 85.421 439 45 6 10 430 334689203 334688766 5.830000e-119 438.0
14 TraesCS5A01G185800 chr5B 83.055 419 49 9 4 404 221201369 221201783 1.300000e-95 361.0
15 TraesCS5A01G185800 chr5B 93.665 221 13 1 719 938 341507223 341507443 3.660000e-86 329.0
16 TraesCS5A01G185800 chr5B 81.720 186 31 3 474 657 334688767 334688583 8.500000e-33 152.0
17 TraesCS5A01G185800 chr6D 82.884 631 66 22 3150 3773 413020805 413021400 3.360000e-146 529.0
18 TraesCS5A01G185800 chr6D 81.905 630 67 21 3150 3773 25490498 25491086 5.700000e-134 488.0
19 TraesCS5A01G185800 chr6D 82.282 412 57 5 8 403 420201671 420201260 4.700000e-90 342.0
20 TraesCS5A01G185800 chr4D 82.698 630 69 20 3150 3773 506091437 506092032 1.560000e-144 523.0
21 TraesCS5A01G185800 chr4D 94.805 77 4 0 1962 2038 347173362 347173286 2.400000e-23 121.0
22 TraesCS5A01G185800 chr7A 81.861 634 72 20 3150 3776 32951441 32950844 1.230000e-135 494.0
23 TraesCS5A01G185800 chr7A 94.805 77 4 0 1962 2038 397427008 397426932 2.400000e-23 121.0
24 TraesCS5A01G185800 chr3A 81.616 631 74 23 3150 3773 479685859 479686454 7.380000e-133 484.0
25 TraesCS5A01G185800 chr6A 81.458 631 75 23 3150 3773 594275500 594276095 3.430000e-131 479.0
26 TraesCS5A01G185800 chr6A 82.609 345 51 4 10 348 587733755 587733414 3.710000e-76 296.0
27 TraesCS5A01G185800 chr4A 82.163 527 57 25 3150 3668 648976527 648977024 7.590000e-113 418.0
28 TraesCS5A01G185800 chr4A 96.744 215 7 0 724 938 583935829 583935615 4.670000e-95 359.0
29 TraesCS5A01G185800 chr2D 84.300 414 47 4 5 401 474642184 474642596 5.950000e-104 388.0
30 TraesCS5A01G185800 chr2D 84.000 325 42 8 2209 2527 13980812 13980492 2.220000e-78 303.0
31 TraesCS5A01G185800 chr7D 83.942 411 51 4 5 404 46130220 46130626 3.580000e-101 379.0
32 TraesCS5A01G185800 chr7D 94.805 77 4 0 1962 2038 435181372 435181448 2.400000e-23 121.0
33 TraesCS5A01G185800 chr2A 97.183 213 6 0 726 938 641599756 641599544 1.300000e-95 361.0
34 TraesCS5A01G185800 chr2A 96.313 217 8 0 722 938 592830550 592830766 1.680000e-94 357.0
35 TraesCS5A01G185800 chr2A 80.580 345 58 7 4 342 17995200 17994859 1.750000e-64 257.0
36 TraesCS5A01G185800 chr2A 80.290 345 59 7 4 342 18000806 18000465 8.150000e-63 252.0
37 TraesCS5A01G185800 chr2A 84.390 205 20 6 1976 2169 16267879 16268082 1.800000e-44 191.0
38 TraesCS5A01G185800 chr1B 97.170 212 5 1 724 935 340459626 340459836 1.680000e-94 357.0
39 TraesCS5A01G185800 chr1B 94.836 213 11 0 726 938 581118102 581118314 2.830000e-87 333.0
40 TraesCS5A01G185800 chr7B 95.755 212 9 0 727 938 679674984 679674773 4.700000e-90 342.0
41 TraesCS5A01G185800 chr7B 94.860 214 11 0 725 938 747235016 747234803 7.860000e-88 335.0
42 TraesCS5A01G185800 chr6B 93.363 226 12 3 714 938 257597096 257596873 1.020000e-86 331.0
43 TraesCS5A01G185800 chr6B 84.058 345 45 3 8 346 548113827 548113487 1.700000e-84 324.0
44 TraesCS5A01G185800 chr6B 82.906 351 43 10 4 346 454517024 454517365 2.870000e-77 300.0
45 TraesCS5A01G185800 chr2B 82.899 345 48 6 4 342 462292371 462292710 2.870000e-77 300.0
46 TraesCS5A01G185800 chrUn 80.465 215 26 6 1976 2175 2058397 2058184 3.060000e-32 150.0
47 TraesCS5A01G185800 chr3D 94.805 77 4 0 1962 2038 584380482 584380406 2.400000e-23 121.0
48 TraesCS5A01G185800 chr3B 94.805 77 4 0 1962 2038 290617137 290617213 2.400000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G185800 chr5A 386163719 386168621 4902 True 3076.933333 9055 98.692667 1 4903 3 chr5A.!!$R1 4902
1 TraesCS5A01G185800 chr5D 293164583 293169372 4789 True 1260.260000 5123 92.540600 267 4899 5 chr5D.!!$R2 4632
2 TraesCS5A01G185800 chr5B 334684019 334689203 5184 True 1105.666667 2531 90.448667 10 4899 6 chr5B.!!$R1 4889
3 TraesCS5A01G185800 chr6D 413020805 413021400 595 False 529.000000 529 82.884000 3150 3773 1 chr6D.!!$F2 623
4 TraesCS5A01G185800 chr6D 25490498 25491086 588 False 488.000000 488 81.905000 3150 3773 1 chr6D.!!$F1 623
5 TraesCS5A01G185800 chr4D 506091437 506092032 595 False 523.000000 523 82.698000 3150 3773 1 chr4D.!!$F1 623
6 TraesCS5A01G185800 chr7A 32950844 32951441 597 True 494.000000 494 81.861000 3150 3776 1 chr7A.!!$R1 626
7 TraesCS5A01G185800 chr3A 479685859 479686454 595 False 484.000000 484 81.616000 3150 3773 1 chr3A.!!$F1 623
8 TraesCS5A01G185800 chr6A 594275500 594276095 595 False 479.000000 479 81.458000 3150 3773 1 chr6A.!!$F1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 171 0.105778 GCTAGCGCTCCATTTCCTCT 59.894 55.0 16.34 0.0 0.00 3.69 F
463 482 0.109458 GCGTCAAAATCGTTTCCCCC 60.109 55.0 0.00 0.0 0.00 5.40 F
464 483 0.167251 CGTCAAAATCGTTTCCCCCG 59.833 55.0 0.00 0.0 0.00 5.73 F
921 1368 0.172803 CCTGCAGCAGAAGGATTTGC 59.827 55.0 24.90 0.0 44.27 3.68 F
922 1369 0.885879 CTGCAGCAGAAGGATTTGCA 59.114 50.0 18.42 0.0 42.67 4.08 F
2240 2808 0.731417 ATCTGCGCAGACAAGATTGC 59.269 50.0 40.34 0.0 40.75 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1082 1532 0.426022 ATAGGGGTGAGGAAAGGGGT 59.574 55.000 0.00 0.00 0.00 4.95 R
2227 2795 0.874390 TCAACGGCAATCTTGTCTGC 59.126 50.000 0.00 0.00 37.86 4.26 R
2228 2796 3.837213 AATCAACGGCAATCTTGTCTG 57.163 42.857 0.00 0.00 0.00 3.51 R
2240 2808 5.410067 AGTGCATTTTGGATTAATCAACGG 58.590 37.500 17.07 2.89 0.00 4.44 R
2344 2912 6.210385 TGCATTTTGGATTAACCTAGAGCAAA 59.790 34.615 0.00 0.00 39.86 3.68 R
4074 4720 0.034186 TTCATGGAGGCATGGACACC 60.034 55.000 0.00 0.00 33.61 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.704833 TCGTCCTTGCTGCAGCCC 62.705 66.667 34.64 16.22 41.18 5.19
27 28 3.060615 CCTTGCTGCAGCCCTGTC 61.061 66.667 34.64 8.07 41.18 3.51
66 67 4.115199 GGTTGGATGGCGCCTCCT 62.115 66.667 31.74 18.30 33.69 3.69
67 68 2.044946 GTTGGATGGCGCCTCCTT 60.045 61.111 31.74 16.26 33.69 3.36
71 78 2.268920 GATGGCGCCTCCTTGTCA 59.731 61.111 29.70 4.25 35.26 3.58
109 116 3.069318 GTCGTCCTCTTCCCGGCT 61.069 66.667 0.00 0.00 0.00 5.52
110 117 3.068691 TCGTCCTCTTCCCGGCTG 61.069 66.667 0.00 0.00 0.00 4.85
112 119 4.821589 GTCCTCTTCCCGGCTGCG 62.822 72.222 0.00 0.00 0.00 5.18
133 140 3.492311 GACAGGCGGCGATCTCCTC 62.492 68.421 12.98 0.35 0.00 3.71
134 141 3.531207 CAGGCGGCGATCTCCTCA 61.531 66.667 12.98 0.00 0.00 3.86
140 147 2.735772 GGCGATCTCCTCAAGGGCA 61.736 63.158 0.00 0.00 35.41 5.36
144 151 2.932130 GATCTCCTCAAGGGCACGGC 62.932 65.000 0.00 0.00 35.41 5.68
164 171 0.105778 GCTAGCGCTCCATTTCCTCT 59.894 55.000 16.34 0.00 0.00 3.69
168 175 1.816537 CGCTCCATTTCCTCTCGGA 59.183 57.895 0.00 0.00 37.60 4.55
169 176 0.390860 CGCTCCATTTCCTCTCGGAT 59.609 55.000 0.00 0.00 39.58 4.18
179 186 0.945813 CCTCTCGGATGTAGTCGTCC 59.054 60.000 0.00 0.00 44.07 4.79
182 189 0.812811 CTCGGATGTAGTCGTCCCGA 60.813 60.000 0.00 0.00 44.52 5.14
184 191 1.359475 GGATGTAGTCGTCCCGAGC 59.641 63.158 0.00 0.00 42.30 5.03
232 239 1.156645 GCCATGTCGATGTGCTCCTC 61.157 60.000 0.00 0.00 0.00 3.71
247 254 1.535896 CTCCTCTTTGACGACGACAGA 59.464 52.381 0.00 0.00 0.00 3.41
278 285 1.893919 GCTCCTTCTTCGGCCTGACT 61.894 60.000 0.00 0.00 0.00 3.41
320 327 4.388499 GGAGAAGGTTGGCGGCGA 62.388 66.667 12.98 0.00 0.00 5.54
348 355 0.739813 GTTTATGACGAGGCTGCCGT 60.740 55.000 13.96 8.46 43.56 5.68
363 381 0.944311 GCCGTTGCGTCTTCTCTTGA 60.944 55.000 0.00 0.00 0.00 3.02
424 443 2.916052 TTCTCGGCGTCGCTGACTT 61.916 57.895 24.51 0.00 39.19 3.01
436 455 2.847234 TGACTTGGCGGGTCCACT 60.847 61.111 7.09 0.00 46.55 4.00
444 463 1.017701 GGCGGGTCCACTAGTTTTCG 61.018 60.000 0.00 0.00 34.01 3.46
445 464 1.632948 GCGGGTCCACTAGTTTTCGC 61.633 60.000 0.00 1.36 35.34 4.70
447 466 0.320160 GGGTCCACTAGTTTTCGCGT 60.320 55.000 5.77 0.00 0.00 6.01
461 480 0.513820 TCGCGTCAAAATCGTTTCCC 59.486 50.000 5.77 0.00 0.00 3.97
463 482 0.109458 GCGTCAAAATCGTTTCCCCC 60.109 55.000 0.00 0.00 0.00 5.40
464 483 0.167251 CGTCAAAATCGTTTCCCCCG 59.833 55.000 0.00 0.00 0.00 5.73
516 535 2.813908 GCCTGAATTCGTCGGCGT 60.814 61.111 10.18 0.00 36.60 5.68
526 545 2.377310 CGTCGGCGTCAATTTCGGT 61.377 57.895 6.85 0.00 0.00 4.69
550 569 4.393990 CCTAACCGACGAAATTTAGGCTTT 59.606 41.667 2.50 0.00 35.45 3.51
554 573 3.498082 CGACGAAATTTAGGCTTTTGGG 58.502 45.455 2.50 0.00 0.00 4.12
555 574 3.189702 CGACGAAATTTAGGCTTTTGGGA 59.810 43.478 2.50 0.00 0.00 4.37
556 575 4.671766 CGACGAAATTTAGGCTTTTGGGAG 60.672 45.833 2.50 0.00 0.00 4.30
559 578 2.215942 ATTTAGGCTTTTGGGAGCGT 57.784 45.000 0.00 0.00 43.62 5.07
563 582 2.626780 GGCTTTTGGGAGCGTGACC 61.627 63.158 0.00 0.00 43.62 4.02
565 584 1.301401 CTTTTGGGAGCGTGACCGA 60.301 57.895 0.00 0.00 35.63 4.69
696 1135 3.710724 GAAGGAAGGGAGTACTACCTGT 58.289 50.000 28.05 16.91 45.16 4.00
703 1150 6.013898 GGAAGGGAGTACTACCTGTTTTTACT 60.014 42.308 28.05 9.04 45.16 2.24
770 1217 9.912634 CATTCCAATTACAAATCAGTACAAAGT 57.087 29.630 0.00 0.00 0.00 2.66
773 1220 9.787435 TCCAATTACAAATCAGTACAAAGTAGT 57.213 29.630 0.00 0.00 0.00 2.73
780 1227 9.561069 ACAAATCAGTACAAAGTAGTTGATTCT 57.439 29.630 13.01 5.85 39.87 2.40
790 1237 9.337396 ACAAAGTAGTTGATTCTTACAATCACA 57.663 29.630 0.00 0.00 39.87 3.58
791 1238 9.599322 CAAAGTAGTTGATTCTTACAATCACAC 57.401 33.333 0.00 0.74 39.87 3.82
792 1239 9.561069 AAAGTAGTTGATTCTTACAATCACACT 57.439 29.630 12.55 12.55 36.49 3.55
793 1240 8.539770 AGTAGTTGATTCTTACAATCACACTG 57.460 34.615 15.18 0.00 36.49 3.66
794 1241 8.367911 AGTAGTTGATTCTTACAATCACACTGA 58.632 33.333 15.18 0.00 36.49 3.41
795 1242 8.988934 GTAGTTGATTCTTACAATCACACTGAA 58.011 33.333 15.18 0.00 36.49 3.02
796 1243 8.450578 AGTTGATTCTTACAATCACACTGAAA 57.549 30.769 0.00 0.00 36.49 2.69
797 1244 8.345565 AGTTGATTCTTACAATCACACTGAAAC 58.654 33.333 0.00 0.00 36.49 2.78
798 1245 6.887368 TGATTCTTACAATCACACTGAAACG 58.113 36.000 0.00 0.00 32.21 3.60
799 1246 4.725556 TCTTACAATCACACTGAAACGC 57.274 40.909 0.00 0.00 0.00 4.84
800 1247 4.123506 TCTTACAATCACACTGAAACGCA 58.876 39.130 0.00 0.00 0.00 5.24
801 1248 4.572795 TCTTACAATCACACTGAAACGCAA 59.427 37.500 0.00 0.00 0.00 4.85
802 1249 3.773860 ACAATCACACTGAAACGCAAA 57.226 38.095 0.00 0.00 0.00 3.68
803 1250 3.434637 ACAATCACACTGAAACGCAAAC 58.565 40.909 0.00 0.00 0.00 2.93
804 1251 3.119673 ACAATCACACTGAAACGCAAACA 60.120 39.130 0.00 0.00 0.00 2.83
805 1252 2.535934 TCACACTGAAACGCAAACAC 57.464 45.000 0.00 0.00 0.00 3.32
806 1253 1.807142 TCACACTGAAACGCAAACACA 59.193 42.857 0.00 0.00 0.00 3.72
807 1254 2.226674 TCACACTGAAACGCAAACACAA 59.773 40.909 0.00 0.00 0.00 3.33
808 1255 2.983136 CACACTGAAACGCAAACACAAA 59.017 40.909 0.00 0.00 0.00 2.83
809 1256 3.059306 CACACTGAAACGCAAACACAAAG 59.941 43.478 0.00 0.00 0.00 2.77
810 1257 2.598192 CACTGAAACGCAAACACAAAGG 59.402 45.455 0.00 0.00 0.00 3.11
811 1258 2.490115 ACTGAAACGCAAACACAAAGGA 59.510 40.909 0.00 0.00 0.00 3.36
812 1259 2.851824 CTGAAACGCAAACACAAAGGAC 59.148 45.455 0.00 0.00 0.00 3.85
813 1260 2.190161 GAAACGCAAACACAAAGGACC 58.810 47.619 0.00 0.00 0.00 4.46
814 1261 1.178276 AACGCAAACACAAAGGACCA 58.822 45.000 0.00 0.00 0.00 4.02
815 1262 1.398692 ACGCAAACACAAAGGACCAT 58.601 45.000 0.00 0.00 0.00 3.55
816 1263 1.066908 ACGCAAACACAAAGGACCATG 59.933 47.619 0.00 0.00 0.00 3.66
817 1264 1.336440 CGCAAACACAAAGGACCATGA 59.664 47.619 0.00 0.00 0.00 3.07
818 1265 2.223688 CGCAAACACAAAGGACCATGAA 60.224 45.455 0.00 0.00 0.00 2.57
819 1266 3.123050 GCAAACACAAAGGACCATGAAC 58.877 45.455 0.00 0.00 0.00 3.18
820 1267 3.430098 GCAAACACAAAGGACCATGAACA 60.430 43.478 0.00 0.00 0.00 3.18
821 1268 4.111916 CAAACACAAAGGACCATGAACAC 58.888 43.478 0.00 0.00 0.00 3.32
822 1269 2.306847 ACACAAAGGACCATGAACACC 58.693 47.619 0.00 0.00 0.00 4.16
823 1270 2.091885 ACACAAAGGACCATGAACACCT 60.092 45.455 0.00 0.00 0.00 4.00
824 1271 3.137544 ACACAAAGGACCATGAACACCTA 59.862 43.478 0.00 0.00 32.06 3.08
825 1272 3.753272 CACAAAGGACCATGAACACCTAG 59.247 47.826 0.00 0.00 32.06 3.02
826 1273 3.650942 ACAAAGGACCATGAACACCTAGA 59.349 43.478 0.00 0.00 32.06 2.43
827 1274 4.256920 CAAAGGACCATGAACACCTAGAG 58.743 47.826 0.00 0.00 32.06 2.43
828 1275 3.191888 AGGACCATGAACACCTAGAGT 57.808 47.619 0.00 0.00 0.00 3.24
829 1276 4.332683 AGGACCATGAACACCTAGAGTA 57.667 45.455 0.00 0.00 0.00 2.59
830 1277 4.024670 AGGACCATGAACACCTAGAGTAC 58.975 47.826 0.00 0.00 0.00 2.73
831 1278 3.132467 GGACCATGAACACCTAGAGTACC 59.868 52.174 0.00 0.00 0.00 3.34
832 1279 3.105283 ACCATGAACACCTAGAGTACCC 58.895 50.000 0.00 0.00 0.00 3.69
833 1280 3.246021 ACCATGAACACCTAGAGTACCCT 60.246 47.826 0.00 0.00 0.00 4.34
834 1281 4.016851 ACCATGAACACCTAGAGTACCCTA 60.017 45.833 0.00 0.00 0.00 3.53
835 1282 4.960469 CCATGAACACCTAGAGTACCCTAA 59.040 45.833 0.00 0.00 0.00 2.69
836 1283 5.069251 CCATGAACACCTAGAGTACCCTAAG 59.931 48.000 0.00 0.00 0.00 2.18
837 1284 5.525454 TGAACACCTAGAGTACCCTAAGA 57.475 43.478 0.00 0.00 0.00 2.10
838 1285 5.259632 TGAACACCTAGAGTACCCTAAGAC 58.740 45.833 0.00 0.00 0.00 3.01
839 1286 4.942363 ACACCTAGAGTACCCTAAGACA 57.058 45.455 0.00 0.00 0.00 3.41
840 1287 5.266709 ACACCTAGAGTACCCTAAGACAA 57.733 43.478 0.00 0.00 0.00 3.18
841 1288 5.015515 ACACCTAGAGTACCCTAAGACAAC 58.984 45.833 0.00 0.00 0.00 3.32
842 1289 4.401837 CACCTAGAGTACCCTAAGACAACC 59.598 50.000 0.00 0.00 0.00 3.77
843 1290 4.045079 ACCTAGAGTACCCTAAGACAACCA 59.955 45.833 0.00 0.00 0.00 3.67
844 1291 5.209659 CCTAGAGTACCCTAAGACAACCAT 58.790 45.833 0.00 0.00 0.00 3.55
845 1292 6.068616 ACCTAGAGTACCCTAAGACAACCATA 60.069 42.308 0.00 0.00 0.00 2.74
846 1293 6.837568 CCTAGAGTACCCTAAGACAACCATAA 59.162 42.308 0.00 0.00 0.00 1.90
847 1294 6.541934 AGAGTACCCTAAGACAACCATAAC 57.458 41.667 0.00 0.00 0.00 1.89
848 1295 6.021030 AGAGTACCCTAAGACAACCATAACA 58.979 40.000 0.00 0.00 0.00 2.41
849 1296 6.046290 AGTACCCTAAGACAACCATAACAC 57.954 41.667 0.00 0.00 0.00 3.32
850 1297 4.986054 ACCCTAAGACAACCATAACACA 57.014 40.909 0.00 0.00 0.00 3.72
851 1298 5.313280 ACCCTAAGACAACCATAACACAA 57.687 39.130 0.00 0.00 0.00 3.33
852 1299 5.313712 ACCCTAAGACAACCATAACACAAG 58.686 41.667 0.00 0.00 0.00 3.16
853 1300 5.072600 ACCCTAAGACAACCATAACACAAGA 59.927 40.000 0.00 0.00 0.00 3.02
854 1301 6.001460 CCCTAAGACAACCATAACACAAGAA 58.999 40.000 0.00 0.00 0.00 2.52
855 1302 6.149474 CCCTAAGACAACCATAACACAAGAAG 59.851 42.308 0.00 0.00 0.00 2.85
856 1303 6.934645 CCTAAGACAACCATAACACAAGAAGA 59.065 38.462 0.00 0.00 0.00 2.87
857 1304 7.607991 CCTAAGACAACCATAACACAAGAAGAT 59.392 37.037 0.00 0.00 0.00 2.40
858 1305 7.440523 AAGACAACCATAACACAAGAAGATC 57.559 36.000 0.00 0.00 0.00 2.75
859 1306 6.773638 AGACAACCATAACACAAGAAGATCT 58.226 36.000 0.00 0.00 0.00 2.75
860 1307 6.876257 AGACAACCATAACACAAGAAGATCTC 59.124 38.462 0.00 0.00 0.00 2.75
861 1308 5.940470 ACAACCATAACACAAGAAGATCTCC 59.060 40.000 0.00 0.00 0.00 3.71
862 1309 4.759782 ACCATAACACAAGAAGATCTCCG 58.240 43.478 0.00 0.00 0.00 4.63
863 1310 4.122776 CCATAACACAAGAAGATCTCCGG 58.877 47.826 0.00 0.00 0.00 5.14
864 1311 4.383118 CCATAACACAAGAAGATCTCCGGT 60.383 45.833 0.00 0.00 0.00 5.28
865 1312 2.751166 ACACAAGAAGATCTCCGGTG 57.249 50.000 0.00 0.00 32.65 4.94
866 1313 1.338200 ACACAAGAAGATCTCCGGTGC 60.338 52.381 0.00 0.00 30.81 5.01
867 1314 0.250513 ACAAGAAGATCTCCGGTGCC 59.749 55.000 0.00 0.00 0.00 5.01
868 1315 0.462759 CAAGAAGATCTCCGGTGCCC 60.463 60.000 0.00 0.00 0.00 5.36
869 1316 0.618968 AAGAAGATCTCCGGTGCCCT 60.619 55.000 0.00 0.00 0.00 5.19
870 1317 1.144936 GAAGATCTCCGGTGCCCTG 59.855 63.158 0.00 0.00 0.00 4.45
871 1318 1.613630 AAGATCTCCGGTGCCCTGT 60.614 57.895 0.00 0.00 0.00 4.00
872 1319 1.903877 AAGATCTCCGGTGCCCTGTG 61.904 60.000 0.00 0.00 0.00 3.66
873 1320 2.607750 ATCTCCGGTGCCCTGTGT 60.608 61.111 0.00 0.00 0.00 3.72
874 1321 2.579684 GATCTCCGGTGCCCTGTGTC 62.580 65.000 0.00 0.00 0.00 3.67
875 1322 4.742201 CTCCGGTGCCCTGTGTCG 62.742 72.222 0.00 0.00 0.00 4.35
878 1325 4.293648 CGGTGCCCTGTGTCGTCA 62.294 66.667 0.00 0.00 0.00 4.35
879 1326 2.347490 GGTGCCCTGTGTCGTCAT 59.653 61.111 0.00 0.00 0.00 3.06
880 1327 1.741770 GGTGCCCTGTGTCGTCATC 60.742 63.158 0.00 0.00 0.00 2.92
881 1328 1.741770 GTGCCCTGTGTCGTCATCC 60.742 63.158 0.00 0.00 0.00 3.51
882 1329 1.913262 TGCCCTGTGTCGTCATCCT 60.913 57.895 0.00 0.00 0.00 3.24
883 1330 1.296715 GCCCTGTGTCGTCATCCTT 59.703 57.895 0.00 0.00 0.00 3.36
884 1331 1.021390 GCCCTGTGTCGTCATCCTTG 61.021 60.000 0.00 0.00 0.00 3.61
885 1332 0.608130 CCCTGTGTCGTCATCCTTGA 59.392 55.000 0.00 0.00 0.00 3.02
886 1333 1.001974 CCCTGTGTCGTCATCCTTGAA 59.998 52.381 0.00 0.00 32.48 2.69
887 1334 2.355108 CCCTGTGTCGTCATCCTTGAAT 60.355 50.000 0.00 0.00 32.48 2.57
888 1335 2.932614 CCTGTGTCGTCATCCTTGAATC 59.067 50.000 0.00 0.00 32.48 2.52
889 1336 3.368843 CCTGTGTCGTCATCCTTGAATCT 60.369 47.826 0.00 0.00 32.48 2.40
890 1337 4.248859 CTGTGTCGTCATCCTTGAATCTT 58.751 43.478 0.00 0.00 32.48 2.40
891 1338 3.996363 TGTGTCGTCATCCTTGAATCTTG 59.004 43.478 0.00 0.00 32.48 3.02
892 1339 4.245660 GTGTCGTCATCCTTGAATCTTGA 58.754 43.478 0.00 0.00 32.48 3.02
893 1340 4.328440 GTGTCGTCATCCTTGAATCTTGAG 59.672 45.833 0.00 0.00 32.48 3.02
894 1341 4.220602 TGTCGTCATCCTTGAATCTTGAGA 59.779 41.667 0.00 0.00 32.48 3.27
895 1342 4.803088 GTCGTCATCCTTGAATCTTGAGAG 59.197 45.833 0.00 0.00 32.48 3.20
896 1343 4.706962 TCGTCATCCTTGAATCTTGAGAGA 59.293 41.667 0.00 0.00 36.09 3.10
897 1344 5.185828 TCGTCATCCTTGAATCTTGAGAGAA 59.814 40.000 0.00 0.00 35.07 2.87
898 1345 5.519566 CGTCATCCTTGAATCTTGAGAGAAG 59.480 44.000 0.00 0.00 35.07 2.85
899 1346 6.626844 CGTCATCCTTGAATCTTGAGAGAAGA 60.627 42.308 0.00 0.00 35.07 2.87
900 1347 6.534793 GTCATCCTTGAATCTTGAGAGAAGAC 59.465 42.308 0.00 0.00 35.07 3.01
901 1348 5.413309 TCCTTGAATCTTGAGAGAAGACC 57.587 43.478 0.00 0.00 35.07 3.85
902 1349 4.223923 TCCTTGAATCTTGAGAGAAGACCC 59.776 45.833 0.00 0.00 35.07 4.46
903 1350 4.512484 CTTGAATCTTGAGAGAAGACCCC 58.488 47.826 0.00 0.00 35.07 4.95
904 1351 3.796111 TGAATCTTGAGAGAAGACCCCT 58.204 45.455 0.00 0.00 35.07 4.79
905 1352 3.517100 TGAATCTTGAGAGAAGACCCCTG 59.483 47.826 0.00 0.00 35.07 4.45
906 1353 1.270907 TCTTGAGAGAAGACCCCTGC 58.729 55.000 0.00 0.00 0.00 4.85
907 1354 0.979665 CTTGAGAGAAGACCCCTGCA 59.020 55.000 0.00 0.00 0.00 4.41
908 1355 0.979665 TTGAGAGAAGACCCCTGCAG 59.020 55.000 6.78 6.78 0.00 4.41
909 1356 1.220477 GAGAGAAGACCCCTGCAGC 59.780 63.158 8.66 0.00 0.00 5.25
910 1357 1.537397 AGAGAAGACCCCTGCAGCA 60.537 57.895 8.66 0.00 0.00 4.41
911 1358 1.078567 GAGAAGACCCCTGCAGCAG 60.079 63.158 16.23 16.23 0.00 4.24
912 1359 1.537397 AGAAGACCCCTGCAGCAGA 60.537 57.895 24.90 0.00 32.44 4.26
913 1360 1.130054 AGAAGACCCCTGCAGCAGAA 61.130 55.000 24.90 0.00 32.44 3.02
914 1361 0.676151 GAAGACCCCTGCAGCAGAAG 60.676 60.000 24.90 16.19 32.44 2.85
915 1362 2.045536 GACCCCTGCAGCAGAAGG 60.046 66.667 24.90 23.93 40.72 3.46
916 1363 2.530151 ACCCCTGCAGCAGAAGGA 60.530 61.111 28.86 0.00 44.27 3.36
917 1364 1.919600 GACCCCTGCAGCAGAAGGAT 61.920 60.000 28.86 10.90 44.27 3.24
918 1365 1.305623 CCCCTGCAGCAGAAGGATT 59.694 57.895 24.90 0.00 44.27 3.01
919 1366 0.324091 CCCCTGCAGCAGAAGGATTT 60.324 55.000 24.90 0.00 44.27 2.17
920 1367 0.815734 CCCTGCAGCAGAAGGATTTG 59.184 55.000 24.90 3.99 44.27 2.32
921 1368 0.172803 CCTGCAGCAGAAGGATTTGC 59.827 55.000 24.90 0.00 44.27 3.68
922 1369 0.885879 CTGCAGCAGAAGGATTTGCA 59.114 50.000 18.42 0.00 42.67 4.08
923 1370 1.271379 CTGCAGCAGAAGGATTTGCAA 59.729 47.619 18.42 0.00 43.36 4.08
924 1371 1.000060 TGCAGCAGAAGGATTTGCAAC 60.000 47.619 0.00 0.00 41.34 4.17
925 1372 1.670967 GCAGCAGAAGGATTTGCAACC 60.671 52.381 0.00 0.00 42.67 3.77
926 1373 1.614903 CAGCAGAAGGATTTGCAACCA 59.385 47.619 0.00 0.00 42.67 3.67
927 1374 1.891150 AGCAGAAGGATTTGCAACCAG 59.109 47.619 0.00 0.00 42.67 4.00
928 1375 1.615392 GCAGAAGGATTTGCAACCAGT 59.385 47.619 0.00 0.00 40.02 4.00
929 1376 2.819608 GCAGAAGGATTTGCAACCAGTA 59.180 45.455 0.00 0.00 40.02 2.74
930 1377 3.119708 GCAGAAGGATTTGCAACCAGTAG 60.120 47.826 0.00 0.00 40.02 2.57
931 1378 3.084786 AGAAGGATTTGCAACCAGTAGC 58.915 45.455 0.00 0.00 0.00 3.58
932 1379 2.584835 AGGATTTGCAACCAGTAGCA 57.415 45.000 0.00 0.00 39.32 3.49
1224 1674 2.805353 CGACGACCAAGGACAGCG 60.805 66.667 0.00 0.00 0.00 5.18
1258 1708 5.825593 AGGTGAGTCTTTTCCACAGATTA 57.174 39.130 0.00 0.00 32.79 1.75
1307 1757 4.769345 ATCCACCTTCTCCTCTGATTTC 57.231 45.455 0.00 0.00 0.00 2.17
1318 1768 5.194740 TCTCCTCTGATTTCTCCCTCTCTTA 59.805 44.000 0.00 0.00 0.00 2.10
1352 1802 4.401202 GTGAGAGTAAGAGGGAGAGAAAGG 59.599 50.000 0.00 0.00 0.00 3.11
1353 1803 4.292571 TGAGAGTAAGAGGGAGAGAAAGGA 59.707 45.833 0.00 0.00 0.00 3.36
1354 1804 4.867086 AGAGTAAGAGGGAGAGAAAGGAG 58.133 47.826 0.00 0.00 0.00 3.69
1355 1805 3.958147 GAGTAAGAGGGAGAGAAAGGAGG 59.042 52.174 0.00 0.00 0.00 4.30
1356 1806 2.262266 AAGAGGGAGAGAAAGGAGGG 57.738 55.000 0.00 0.00 0.00 4.30
1357 1807 1.398799 AGAGGGAGAGAAAGGAGGGA 58.601 55.000 0.00 0.00 0.00 4.20
1358 1808 1.290732 AGAGGGAGAGAAAGGAGGGAG 59.709 57.143 0.00 0.00 0.00 4.30
1359 1809 1.289530 GAGGGAGAGAAAGGAGGGAGA 59.710 57.143 0.00 0.00 0.00 3.71
1360 1810 1.290732 AGGGAGAGAAAGGAGGGAGAG 59.709 57.143 0.00 0.00 0.00 3.20
1361 1811 1.289530 GGGAGAGAAAGGAGGGAGAGA 59.710 57.143 0.00 0.00 0.00 3.10
1432 1959 5.520376 CCTTATAGGGCAAATGGAAAGTG 57.480 43.478 0.00 0.00 0.00 3.16
1505 2045 6.155565 TCGGAATGGAAATACTAGTGAGGAAA 59.844 38.462 5.39 0.00 0.00 3.13
1546 2086 3.873952 AGCGCAGAAGAAATACTGGATTC 59.126 43.478 11.47 0.00 35.05 2.52
1547 2087 3.002759 GCGCAGAAGAAATACTGGATTCC 59.997 47.826 0.30 0.00 35.05 3.01
1626 2166 5.105595 CGAGATCTGGGTAGATGCAATGATA 60.106 44.000 0.00 0.00 43.63 2.15
1656 2196 1.074752 GCTCTTCTGTAGCACACTGC 58.925 55.000 0.00 0.00 45.46 4.40
1791 2331 7.919690 TGTAACACTGTCTCTCTTTCATTTTG 58.080 34.615 0.00 0.00 0.00 2.44
1875 2418 3.266772 TGCTGTAATCTTTGGTCAGGGAT 59.733 43.478 0.00 0.00 0.00 3.85
1908 2451 1.597742 TTGCTCTGCAGAACACTTCC 58.402 50.000 19.16 2.03 40.61 3.46
2227 2795 4.391358 CCAGTTACGTTTGTTTATCTGCG 58.609 43.478 0.00 0.00 0.00 5.18
2228 2796 3.838550 CAGTTACGTTTGTTTATCTGCGC 59.161 43.478 0.00 0.00 0.00 6.09
2240 2808 0.731417 ATCTGCGCAGACAAGATTGC 59.269 50.000 40.34 0.00 40.75 3.56
2344 2912 9.113838 CTTATGGTTGCTAATCTAATGACAAGT 57.886 33.333 0.00 0.00 0.00 3.16
2953 3573 8.956426 TCACATTCACTTATGGATCTTTTTACC 58.044 33.333 0.00 0.00 0.00 2.85
2954 3574 8.190784 CACATTCACTTATGGATCTTTTTACCC 58.809 37.037 0.00 0.00 0.00 3.69
2955 3575 7.342026 ACATTCACTTATGGATCTTTTTACCCC 59.658 37.037 0.00 0.00 0.00 4.95
2956 3576 5.762279 TCACTTATGGATCTTTTTACCCCC 58.238 41.667 0.00 0.00 0.00 5.40
2957 3577 5.254267 TCACTTATGGATCTTTTTACCCCCA 59.746 40.000 0.00 0.00 0.00 4.96
2958 3578 6.068498 TCACTTATGGATCTTTTTACCCCCAT 60.068 38.462 0.00 0.00 37.98 4.00
2959 3579 6.611236 CACTTATGGATCTTTTTACCCCCATT 59.389 38.462 0.00 0.00 36.06 3.16
2960 3580 7.125659 CACTTATGGATCTTTTTACCCCCATTT 59.874 37.037 0.00 0.00 36.06 2.32
2961 3581 8.348354 ACTTATGGATCTTTTTACCCCCATTTA 58.652 33.333 0.00 0.00 36.06 1.40
2962 3582 9.207868 CTTATGGATCTTTTTACCCCCATTTAA 57.792 33.333 0.00 0.00 36.06 1.52
2963 3583 9.562226 TTATGGATCTTTTTACCCCCATTTAAA 57.438 29.630 0.00 0.00 36.06 1.52
2964 3584 8.637108 ATGGATCTTTTTACCCCCATTTAAAT 57.363 30.769 0.00 0.00 30.91 1.40
2965 3585 8.456221 TGGATCTTTTTACCCCCATTTAAATT 57.544 30.769 0.00 0.00 0.00 1.82
2966 3586 8.895624 TGGATCTTTTTACCCCCATTTAAATTT 58.104 29.630 0.00 0.00 0.00 1.82
2967 3587 9.747898 GGATCTTTTTACCCCCATTTAAATTTT 57.252 29.630 0.00 0.00 0.00 1.82
2974 3594 9.868160 TTTACCCCCATTTAAATTTTTGAATGT 57.132 25.926 15.25 4.32 40.48 2.71
3174 3804 6.687604 AGTGCCCATGTATTTCTTTTGTTAC 58.312 36.000 0.00 0.00 0.00 2.50
3340 3971 7.284919 TGGTCCAAAGGAGAAAATTAAGTTC 57.715 36.000 0.00 0.00 29.39 3.01
3436 4068 7.496747 AGAGCTACATCTGATTTTCCTACTTC 58.503 38.462 0.00 0.00 0.00 3.01
3613 4252 4.441079 GGCAAATTGGAAGACTGATGATGG 60.441 45.833 0.00 0.00 0.00 3.51
3625 4264 1.463018 ATGATGGGGAGGAGAGGCC 60.463 63.158 0.00 0.00 0.00 5.19
3713 4354 4.773742 GAACCGTTTCCTAATCGTGATC 57.226 45.455 0.00 0.00 0.00 2.92
3715 4356 4.402056 ACCGTTTCCTAATCGTGATCAT 57.598 40.909 0.00 0.00 0.00 2.45
3719 4360 4.803613 CGTTTCCTAATCGTGATCATGACA 59.196 41.667 19.76 9.89 0.00 3.58
3977 4621 6.925718 GCTTTACTCCATTCAAAGAAAGCTTT 59.074 34.615 12.53 12.53 44.93 3.51
4065 4711 3.490761 GGGGGCACGTATGAATTTTCATG 60.491 47.826 14.54 3.25 46.68 3.07
4134 4793 9.953697 CACAGTAGTAATTAGTAAGAGGTGATC 57.046 37.037 1.48 0.00 0.00 2.92
4135 4794 9.696572 ACAGTAGTAATTAGTAAGAGGTGATCA 57.303 33.333 1.48 0.00 0.00 2.92
4152 4811 4.933400 GTGATCATTCATTTTGCTGGCTTT 59.067 37.500 0.00 0.00 33.56 3.51
4187 4846 3.127895 TGCAAGACAAGCGTAACAAAAGT 59.872 39.130 0.00 0.00 33.85 2.66
4188 4847 3.482110 GCAAGACAAGCGTAACAAAAGTG 59.518 43.478 0.00 0.00 0.00 3.16
4206 4865 7.326547 ACAAAAGTGTTCGTTTTATTTCGTGTT 59.673 29.630 0.00 0.00 32.58 3.32
4210 4869 7.462731 AGTGTTCGTTTTATTTCGTGTTACAA 58.537 30.769 0.00 0.00 0.00 2.41
4227 4886 8.767085 CGTGTTACAACTGATTACTCCTTTTTA 58.233 33.333 0.00 0.00 0.00 1.52
4268 4929 6.271857 AGTGGCATTCTATGTCCAATATCTCT 59.728 38.462 0.00 0.00 37.89 3.10
4338 5000 1.512926 ACGAGATGCAGAACACCAAC 58.487 50.000 0.00 0.00 0.00 3.77
4432 5094 3.628832 AAAAAGAATGGGGGTGAAGGA 57.371 42.857 0.00 0.00 0.00 3.36
4435 5097 0.921256 AGAATGGGGGTGAAGGAGGG 60.921 60.000 0.00 0.00 0.00 4.30
4438 5100 4.364686 GGGGGTGAAGGAGGGGGA 62.365 72.222 0.00 0.00 0.00 4.81
4439 5101 2.692741 GGGGTGAAGGAGGGGGAG 60.693 72.222 0.00 0.00 0.00 4.30
4440 5102 3.412408 GGGTGAAGGAGGGGGAGC 61.412 72.222 0.00 0.00 0.00 4.70
4441 5103 2.610859 GGTGAAGGAGGGGGAGCA 60.611 66.667 0.00 0.00 0.00 4.26
4442 5104 2.671682 GTGAAGGAGGGGGAGCAC 59.328 66.667 0.00 0.00 0.00 4.40
4509 5431 2.252714 GTGTTCTTCCCTCCTCTGTCT 58.747 52.381 0.00 0.00 0.00 3.41
4522 5461 0.780637 TCTGTCTCTCAGAGGGTGGT 59.219 55.000 0.57 0.00 46.77 4.16
4549 5488 2.433970 ACCTCCAGCTGCTTCTCTAATC 59.566 50.000 8.66 0.00 0.00 1.75
4553 5492 4.797743 TCCAGCTGCTTCTCTAATCTCTA 58.202 43.478 8.66 0.00 0.00 2.43
4554 5493 4.582656 TCCAGCTGCTTCTCTAATCTCTAC 59.417 45.833 8.66 0.00 0.00 2.59
4555 5494 4.261994 CCAGCTGCTTCTCTAATCTCTACC 60.262 50.000 8.66 0.00 0.00 3.18
4586 5525 4.908736 TCTTCTCTGTTTCTTTGTTTGCG 58.091 39.130 0.00 0.00 0.00 4.85
4627 5566 3.872696 TCATGCGAAGAAGGCAGAAATA 58.127 40.909 0.00 0.00 44.71 1.40
4638 5577 5.582665 AGAAGGCAGAAATATCGAAGTTGTC 59.417 40.000 0.00 0.00 0.00 3.18
4639 5578 4.832248 AGGCAGAAATATCGAAGTTGTCA 58.168 39.130 0.00 0.00 0.00 3.58
4675 5623 2.163818 TGTTAACGTCCAAGGCAGAG 57.836 50.000 0.26 0.00 0.00 3.35
4899 5859 2.358737 GGAGAACGGGTGGTGCTG 60.359 66.667 0.00 0.00 33.33 4.41
4900 5860 3.050275 GAGAACGGGTGGTGCTGC 61.050 66.667 0.00 0.00 33.33 5.25
4901 5861 3.537206 GAGAACGGGTGGTGCTGCT 62.537 63.158 0.00 0.00 33.33 4.24
4902 5862 3.357079 GAACGGGTGGTGCTGCTG 61.357 66.667 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.579201 CAGCAAGGACGACGGGAT 59.421 61.111 0.00 0.00 0.00 3.85
2 3 4.680237 TGCAGCAAGGACGACGGG 62.680 66.667 0.00 0.00 0.00 5.28
6 7 4.704833 GGGCTGCAGCAAGGACGA 62.705 66.667 37.63 0.00 44.36 4.20
7 8 4.711949 AGGGCTGCAGCAAGGACG 62.712 66.667 37.63 0.24 44.36 4.79
8 9 3.060615 CAGGGCTGCAGCAAGGAC 61.061 66.667 37.63 20.94 44.36 3.85
23 24 2.650116 CCTCGGTGACCCAGGACAG 61.650 68.421 9.99 0.00 33.33 3.51
56 57 3.241530 AGTGACAAGGAGGCGCCA 61.242 61.111 31.54 0.76 35.94 5.69
63 64 0.591659 CTCGACGACAGTGACAAGGA 59.408 55.000 0.00 0.00 0.00 3.36
64 65 0.387367 CCTCGACGACAGTGACAAGG 60.387 60.000 0.00 0.00 0.00 3.61
66 67 1.068541 CATCCTCGACGACAGTGACAA 60.069 52.381 0.00 0.00 0.00 3.18
67 68 0.521735 CATCCTCGACGACAGTGACA 59.478 55.000 0.00 0.00 0.00 3.58
119 126 2.279784 CTTGAGGAGATCGCCGCC 60.280 66.667 16.14 9.89 34.63 6.13
121 128 2.419198 CCCTTGAGGAGATCGCCG 59.581 66.667 10.07 0.00 38.24 6.46
148 155 1.142748 CGAGAGGAAATGGAGCGCT 59.857 57.895 11.27 11.27 0.00 5.92
184 191 3.316573 GAGACCGGCCTCAAGTGGG 62.317 68.421 13.56 0.00 33.50 4.61
221 228 1.996191 GTCGTCAAAGAGGAGCACATC 59.004 52.381 0.00 0.00 0.00 3.06
232 239 1.606350 GCCGTCTGTCGTCGTCAAAG 61.606 60.000 0.00 0.00 37.94 2.77
252 259 2.509561 GAAGAAGGAGCCGGCGAC 60.510 66.667 23.20 18.32 0.00 5.19
278 285 2.498941 CCGCTCCCATCTTCGCCTA 61.499 63.158 0.00 0.00 0.00 3.93
343 350 1.069090 AAGAGAAGACGCAACGGCA 59.931 52.632 0.00 0.00 37.34 5.69
348 355 0.681733 AGCCTCAAGAGAAGACGCAA 59.318 50.000 0.00 0.00 0.00 4.85
353 360 1.608717 GGCCGAGCCTCAAGAGAAGA 61.609 60.000 7.58 0.00 46.69 2.87
355 362 2.982130 GGCCGAGCCTCAAGAGAA 59.018 61.111 7.58 0.00 46.69 2.87
424 443 0.035739 GAAAACTAGTGGACCCGCCA 59.964 55.000 0.00 0.00 46.96 5.69
436 455 4.455917 AACGATTTTGACGCGAAAACTA 57.544 36.364 15.93 0.00 0.00 2.24
444 463 0.109458 GGGGGAAACGATTTTGACGC 60.109 55.000 0.00 0.00 0.00 5.19
445 464 0.167251 CGGGGGAAACGATTTTGACG 59.833 55.000 0.00 0.00 0.00 4.35
447 466 1.245376 GCCGGGGGAAACGATTTTGA 61.245 55.000 2.18 0.00 0.00 2.69
493 512 1.472480 CCGACGAATTCAGGCCAAATT 59.528 47.619 14.10 14.10 0.00 1.82
494 513 1.094785 CCGACGAATTCAGGCCAAAT 58.905 50.000 5.01 0.66 0.00 2.32
504 523 1.201877 CGAAATTGACGCCGACGAATT 60.202 47.619 0.00 0.00 43.93 2.17
505 524 0.368907 CGAAATTGACGCCGACGAAT 59.631 50.000 0.00 0.00 43.93 3.34
507 526 2.089936 CCGAAATTGACGCCGACGA 61.090 57.895 0.00 0.00 43.93 4.20
510 529 1.738830 GGACCGAAATTGACGCCGA 60.739 57.895 0.00 0.00 0.00 5.54
526 545 3.196254 AGCCTAAATTTCGTCGGTTAGGA 59.804 43.478 19.95 0.00 43.57 2.94
535 554 3.056821 GCTCCCAAAAGCCTAAATTTCGT 60.057 43.478 0.00 0.00 36.22 3.85
550 569 4.373116 GCTCGGTCACGCTCCCAA 62.373 66.667 0.00 0.00 40.69 4.12
554 573 1.298859 AAATTGGCTCGGTCACGCTC 61.299 55.000 0.00 0.00 40.69 5.03
555 574 0.889186 AAAATTGGCTCGGTCACGCT 60.889 50.000 0.00 0.00 40.69 5.07
556 575 0.039527 AAAAATTGGCTCGGTCACGC 60.040 50.000 0.00 0.00 40.69 5.34
578 597 1.917568 ACCCCTTTTTATCACCGGCTA 59.082 47.619 0.00 0.00 0.00 3.93
583 602 3.532542 CTCGAGACCCCTTTTTATCACC 58.467 50.000 6.58 0.00 0.00 4.02
585 604 2.504175 CCCTCGAGACCCCTTTTTATCA 59.496 50.000 15.71 0.00 0.00 2.15
676 1115 3.848978 ACAGGTAGTACTCCCTTCCTT 57.151 47.619 3.84 0.00 30.55 3.36
678 1117 4.904895 AAAACAGGTAGTACTCCCTTCC 57.095 45.455 3.84 0.00 0.00 3.46
679 1118 7.002250 AGTAAAAACAGGTAGTACTCCCTTC 57.998 40.000 3.84 0.00 0.00 3.46
680 1119 7.384524 AAGTAAAAACAGGTAGTACTCCCTT 57.615 36.000 3.84 0.00 0.00 3.95
744 1191 9.912634 ACTTTGTACTGATTTGTAATTGGAATG 57.087 29.630 0.00 0.00 0.00 2.67
747 1194 9.787435 ACTACTTTGTACTGATTTGTAATTGGA 57.213 29.630 0.00 0.00 0.00 3.53
754 1201 9.561069 AGAATCAACTACTTTGTACTGATTTGT 57.439 29.630 4.74 0.00 34.52 2.83
764 1211 9.337396 TGTGATTGTAAGAATCAACTACTTTGT 57.663 29.630 1.08 0.00 38.27 2.83
765 1212 9.599322 GTGTGATTGTAAGAATCAACTACTTTG 57.401 33.333 1.08 0.00 38.27 2.77
766 1213 9.561069 AGTGTGATTGTAAGAATCAACTACTTT 57.439 29.630 1.08 0.00 38.27 2.66
767 1214 8.993121 CAGTGTGATTGTAAGAATCAACTACTT 58.007 33.333 1.08 0.00 38.27 2.24
768 1215 8.367911 TCAGTGTGATTGTAAGAATCAACTACT 58.632 33.333 1.08 4.43 38.27 2.57
769 1216 8.534333 TCAGTGTGATTGTAAGAATCAACTAC 57.466 34.615 1.08 2.58 38.27 2.73
770 1217 9.554395 TTTCAGTGTGATTGTAAGAATCAACTA 57.446 29.630 1.08 0.00 38.27 2.24
771 1218 8.345565 GTTTCAGTGTGATTGTAAGAATCAACT 58.654 33.333 1.08 5.21 38.27 3.16
772 1219 7.321271 CGTTTCAGTGTGATTGTAAGAATCAAC 59.679 37.037 1.08 3.41 38.27 3.18
773 1220 7.351981 CGTTTCAGTGTGATTGTAAGAATCAA 58.648 34.615 1.08 0.00 38.27 2.57
774 1221 6.565811 GCGTTTCAGTGTGATTGTAAGAATCA 60.566 38.462 0.00 0.00 34.56 2.57
775 1222 5.790495 GCGTTTCAGTGTGATTGTAAGAATC 59.210 40.000 0.00 0.00 0.00 2.52
776 1223 5.238432 TGCGTTTCAGTGTGATTGTAAGAAT 59.762 36.000 0.00 0.00 0.00 2.40
777 1224 4.572795 TGCGTTTCAGTGTGATTGTAAGAA 59.427 37.500 0.00 0.00 0.00 2.52
778 1225 4.123506 TGCGTTTCAGTGTGATTGTAAGA 58.876 39.130 0.00 0.00 0.00 2.10
779 1226 4.466567 TGCGTTTCAGTGTGATTGTAAG 57.533 40.909 0.00 0.00 0.00 2.34
780 1227 4.884458 TTGCGTTTCAGTGTGATTGTAA 57.116 36.364 0.00 0.00 0.00 2.41
781 1228 4.095036 TGTTTGCGTTTCAGTGTGATTGTA 59.905 37.500 0.00 0.00 0.00 2.41
782 1229 3.119673 TGTTTGCGTTTCAGTGTGATTGT 60.120 39.130 0.00 0.00 0.00 2.71
783 1230 3.240401 GTGTTTGCGTTTCAGTGTGATTG 59.760 43.478 0.00 0.00 0.00 2.67
784 1231 3.119673 TGTGTTTGCGTTTCAGTGTGATT 60.120 39.130 0.00 0.00 0.00 2.57
785 1232 2.421775 TGTGTTTGCGTTTCAGTGTGAT 59.578 40.909 0.00 0.00 0.00 3.06
786 1233 1.807142 TGTGTTTGCGTTTCAGTGTGA 59.193 42.857 0.00 0.00 0.00 3.58
787 1234 2.254918 TGTGTTTGCGTTTCAGTGTG 57.745 45.000 0.00 0.00 0.00 3.82
788 1235 2.999507 TTGTGTTTGCGTTTCAGTGT 57.000 40.000 0.00 0.00 0.00 3.55
789 1236 2.598192 CCTTTGTGTTTGCGTTTCAGTG 59.402 45.455 0.00 0.00 0.00 3.66
790 1237 2.490115 TCCTTTGTGTTTGCGTTTCAGT 59.510 40.909 0.00 0.00 0.00 3.41
791 1238 2.851824 GTCCTTTGTGTTTGCGTTTCAG 59.148 45.455 0.00 0.00 0.00 3.02
792 1239 2.416162 GGTCCTTTGTGTTTGCGTTTCA 60.416 45.455 0.00 0.00 0.00 2.69
793 1240 2.190161 GGTCCTTTGTGTTTGCGTTTC 58.810 47.619 0.00 0.00 0.00 2.78
794 1241 1.546476 TGGTCCTTTGTGTTTGCGTTT 59.454 42.857 0.00 0.00 0.00 3.60
795 1242 1.178276 TGGTCCTTTGTGTTTGCGTT 58.822 45.000 0.00 0.00 0.00 4.84
796 1243 1.066908 CATGGTCCTTTGTGTTTGCGT 59.933 47.619 0.00 0.00 0.00 5.24
797 1244 1.336440 TCATGGTCCTTTGTGTTTGCG 59.664 47.619 0.00 0.00 0.00 4.85
798 1245 3.123050 GTTCATGGTCCTTTGTGTTTGC 58.877 45.455 0.00 0.00 0.00 3.68
799 1246 4.111916 GTGTTCATGGTCCTTTGTGTTTG 58.888 43.478 0.00 0.00 0.00 2.93
800 1247 3.132111 GGTGTTCATGGTCCTTTGTGTTT 59.868 43.478 0.00 0.00 0.00 2.83
801 1248 2.693074 GGTGTTCATGGTCCTTTGTGTT 59.307 45.455 0.00 0.00 0.00 3.32
802 1249 2.091885 AGGTGTTCATGGTCCTTTGTGT 60.092 45.455 0.00 0.00 0.00 3.72
803 1250 2.586425 AGGTGTTCATGGTCCTTTGTG 58.414 47.619 0.00 0.00 0.00 3.33
804 1251 3.650942 TCTAGGTGTTCATGGTCCTTTGT 59.349 43.478 0.00 0.00 0.00 2.83
805 1252 4.256920 CTCTAGGTGTTCATGGTCCTTTG 58.743 47.826 0.00 0.00 0.00 2.77
806 1253 3.910627 ACTCTAGGTGTTCATGGTCCTTT 59.089 43.478 0.00 0.00 0.00 3.11
807 1254 3.521727 ACTCTAGGTGTTCATGGTCCTT 58.478 45.455 0.00 0.00 0.00 3.36
808 1255 3.191888 ACTCTAGGTGTTCATGGTCCT 57.808 47.619 0.00 0.00 0.00 3.85
809 1256 3.132467 GGTACTCTAGGTGTTCATGGTCC 59.868 52.174 0.00 0.00 0.00 4.46
810 1257 3.132467 GGGTACTCTAGGTGTTCATGGTC 59.868 52.174 0.00 0.00 0.00 4.02
811 1258 3.105283 GGGTACTCTAGGTGTTCATGGT 58.895 50.000 0.00 0.00 0.00 3.55
812 1259 3.375699 AGGGTACTCTAGGTGTTCATGG 58.624 50.000 0.00 0.00 0.00 3.66
813 1260 5.892119 TCTTAGGGTACTCTAGGTGTTCATG 59.108 44.000 11.36 0.00 0.00 3.07
814 1261 5.892686 GTCTTAGGGTACTCTAGGTGTTCAT 59.107 44.000 11.36 0.00 0.00 2.57
815 1262 5.222192 TGTCTTAGGGTACTCTAGGTGTTCA 60.222 44.000 11.36 5.20 0.00 3.18
816 1263 5.259632 TGTCTTAGGGTACTCTAGGTGTTC 58.740 45.833 11.36 3.05 0.00 3.18
817 1264 5.266709 TGTCTTAGGGTACTCTAGGTGTT 57.733 43.478 11.36 0.00 0.00 3.32
818 1265 4.942363 TGTCTTAGGGTACTCTAGGTGT 57.058 45.455 11.36 0.00 0.00 4.16
819 1266 4.401837 GGTTGTCTTAGGGTACTCTAGGTG 59.598 50.000 11.36 3.08 0.00 4.00
820 1267 4.045079 TGGTTGTCTTAGGGTACTCTAGGT 59.955 45.833 11.36 0.00 0.00 3.08
821 1268 4.607239 TGGTTGTCTTAGGGTACTCTAGG 58.393 47.826 5.54 5.54 0.00 3.02
822 1269 7.341256 TGTTATGGTTGTCTTAGGGTACTCTAG 59.659 40.741 2.01 0.00 0.00 2.43
823 1270 7.123247 GTGTTATGGTTGTCTTAGGGTACTCTA 59.877 40.741 0.00 0.00 0.00 2.43
824 1271 6.021030 TGTTATGGTTGTCTTAGGGTACTCT 58.979 40.000 0.00 0.00 0.00 3.24
825 1272 6.104665 GTGTTATGGTTGTCTTAGGGTACTC 58.895 44.000 0.00 0.00 0.00 2.59
826 1273 5.544948 TGTGTTATGGTTGTCTTAGGGTACT 59.455 40.000 0.00 0.00 0.00 2.73
827 1274 5.797051 TGTGTTATGGTTGTCTTAGGGTAC 58.203 41.667 0.00 0.00 0.00 3.34
828 1275 6.270463 TCTTGTGTTATGGTTGTCTTAGGGTA 59.730 38.462 0.00 0.00 0.00 3.69
829 1276 4.986054 TGTGTTATGGTTGTCTTAGGGT 57.014 40.909 0.00 0.00 0.00 4.34
830 1277 5.556915 TCTTGTGTTATGGTTGTCTTAGGG 58.443 41.667 0.00 0.00 0.00 3.53
831 1278 6.934645 TCTTCTTGTGTTATGGTTGTCTTAGG 59.065 38.462 0.00 0.00 0.00 2.69
832 1279 7.962964 TCTTCTTGTGTTATGGTTGTCTTAG 57.037 36.000 0.00 0.00 0.00 2.18
833 1280 8.375506 AGATCTTCTTGTGTTATGGTTGTCTTA 58.624 33.333 0.00 0.00 0.00 2.10
834 1281 7.227156 AGATCTTCTTGTGTTATGGTTGTCTT 58.773 34.615 0.00 0.00 0.00 3.01
835 1282 6.773638 AGATCTTCTTGTGTTATGGTTGTCT 58.226 36.000 0.00 0.00 0.00 3.41
836 1283 6.092807 GGAGATCTTCTTGTGTTATGGTTGTC 59.907 42.308 0.00 0.00 0.00 3.18
837 1284 5.940470 GGAGATCTTCTTGTGTTATGGTTGT 59.060 40.000 0.00 0.00 0.00 3.32
838 1285 5.063944 CGGAGATCTTCTTGTGTTATGGTTG 59.936 44.000 0.00 0.00 0.00 3.77
839 1286 5.178797 CGGAGATCTTCTTGTGTTATGGTT 58.821 41.667 0.00 0.00 0.00 3.67
840 1287 4.383118 CCGGAGATCTTCTTGTGTTATGGT 60.383 45.833 0.00 0.00 0.00 3.55
841 1288 4.122776 CCGGAGATCTTCTTGTGTTATGG 58.877 47.826 0.00 0.00 0.00 2.74
842 1289 4.568359 CACCGGAGATCTTCTTGTGTTATG 59.432 45.833 9.46 0.00 0.00 1.90
843 1290 4.759782 CACCGGAGATCTTCTTGTGTTAT 58.240 43.478 9.46 0.00 0.00 1.89
844 1291 3.616560 GCACCGGAGATCTTCTTGTGTTA 60.617 47.826 9.46 0.00 0.00 2.41
845 1292 2.872038 GCACCGGAGATCTTCTTGTGTT 60.872 50.000 9.46 0.00 0.00 3.32
846 1293 1.338200 GCACCGGAGATCTTCTTGTGT 60.338 52.381 9.46 0.96 0.00 3.72
847 1294 1.363744 GCACCGGAGATCTTCTTGTG 58.636 55.000 9.46 13.56 0.00 3.33
848 1295 0.250513 GGCACCGGAGATCTTCTTGT 59.749 55.000 9.46 0.00 0.00 3.16
849 1296 0.462759 GGGCACCGGAGATCTTCTTG 60.463 60.000 9.46 0.00 40.86 3.02
850 1297 1.908483 GGGCACCGGAGATCTTCTT 59.092 57.895 9.46 0.00 40.86 2.52
851 1298 3.635510 GGGCACCGGAGATCTTCT 58.364 61.111 9.46 0.00 40.86 2.85
863 1310 1.741770 GGATGACGACACAGGGCAC 60.742 63.158 0.00 0.00 0.00 5.01
864 1311 1.480212 AAGGATGACGACACAGGGCA 61.480 55.000 0.00 0.00 0.00 5.36
865 1312 1.021390 CAAGGATGACGACACAGGGC 61.021 60.000 0.00 0.00 0.00 5.19
866 1313 0.608130 TCAAGGATGACGACACAGGG 59.392 55.000 0.00 0.00 0.00 4.45
867 1314 2.455674 TTCAAGGATGACGACACAGG 57.544 50.000 0.00 0.00 34.61 4.00
868 1315 3.854666 AGATTCAAGGATGACGACACAG 58.145 45.455 0.00 0.00 34.61 3.66
869 1316 3.961480 AGATTCAAGGATGACGACACA 57.039 42.857 0.00 0.00 34.61 3.72
870 1317 4.245660 TCAAGATTCAAGGATGACGACAC 58.754 43.478 0.00 0.00 34.61 3.67
871 1318 4.220602 TCTCAAGATTCAAGGATGACGACA 59.779 41.667 0.00 0.00 34.61 4.35
872 1319 4.748892 TCTCAAGATTCAAGGATGACGAC 58.251 43.478 0.00 0.00 34.61 4.34
873 1320 4.706962 TCTCTCAAGATTCAAGGATGACGA 59.293 41.667 0.00 0.00 34.61 4.20
874 1321 5.003692 TCTCTCAAGATTCAAGGATGACG 57.996 43.478 0.00 0.00 34.61 4.35
875 1322 6.534793 GTCTTCTCTCAAGATTCAAGGATGAC 59.465 42.308 0.00 0.00 34.61 3.06
876 1323 6.351711 GGTCTTCTCTCAAGATTCAAGGATGA 60.352 42.308 0.00 0.00 0.00 2.92
877 1324 5.816777 GGTCTTCTCTCAAGATTCAAGGATG 59.183 44.000 0.00 0.00 0.00 3.51
878 1325 5.104569 GGGTCTTCTCTCAAGATTCAAGGAT 60.105 44.000 0.00 0.00 0.00 3.24
879 1326 4.223923 GGGTCTTCTCTCAAGATTCAAGGA 59.776 45.833 0.00 0.00 0.00 3.36
880 1327 4.512484 GGGTCTTCTCTCAAGATTCAAGG 58.488 47.826 0.00 0.00 0.00 3.61
881 1328 4.224818 AGGGGTCTTCTCTCAAGATTCAAG 59.775 45.833 0.00 0.00 0.00 3.02
882 1329 4.019860 CAGGGGTCTTCTCTCAAGATTCAA 60.020 45.833 0.00 0.00 0.00 2.69
883 1330 3.517100 CAGGGGTCTTCTCTCAAGATTCA 59.483 47.826 0.00 0.00 0.00 2.57
884 1331 3.681313 GCAGGGGTCTTCTCTCAAGATTC 60.681 52.174 0.00 0.00 0.00 2.52
885 1332 2.238395 GCAGGGGTCTTCTCTCAAGATT 59.762 50.000 0.00 0.00 0.00 2.40
886 1333 1.836802 GCAGGGGTCTTCTCTCAAGAT 59.163 52.381 0.00 0.00 0.00 2.40
887 1334 1.270907 GCAGGGGTCTTCTCTCAAGA 58.729 55.000 0.00 0.00 0.00 3.02
888 1335 0.979665 TGCAGGGGTCTTCTCTCAAG 59.020 55.000 0.00 0.00 0.00 3.02
889 1336 0.979665 CTGCAGGGGTCTTCTCTCAA 59.020 55.000 5.57 0.00 0.00 3.02
890 1337 1.548357 GCTGCAGGGGTCTTCTCTCA 61.548 60.000 17.12 0.00 0.00 3.27
891 1338 1.220477 GCTGCAGGGGTCTTCTCTC 59.780 63.158 17.12 0.00 0.00 3.20
892 1339 1.537397 TGCTGCAGGGGTCTTCTCT 60.537 57.895 17.12 0.00 0.00 3.10
893 1340 1.078567 CTGCTGCAGGGGTCTTCTC 60.079 63.158 21.71 0.00 0.00 2.87
894 1341 1.130054 TTCTGCTGCAGGGGTCTTCT 61.130 55.000 27.79 0.00 31.51 2.85
895 1342 0.676151 CTTCTGCTGCAGGGGTCTTC 60.676 60.000 27.79 0.00 31.51 2.87
896 1343 1.377994 CTTCTGCTGCAGGGGTCTT 59.622 57.895 27.79 0.00 31.51 3.01
897 1344 2.600729 CCTTCTGCTGCAGGGGTCT 61.601 63.158 27.79 0.00 31.51 3.85
898 1345 1.919600 ATCCTTCTGCTGCAGGGGTC 61.920 60.000 27.79 0.00 31.51 4.46
899 1346 1.504275 AATCCTTCTGCTGCAGGGGT 61.504 55.000 27.79 16.41 31.51 4.95
900 1347 0.324091 AAATCCTTCTGCTGCAGGGG 60.324 55.000 27.79 26.44 31.51 4.79
901 1348 0.815734 CAAATCCTTCTGCTGCAGGG 59.184 55.000 27.79 21.56 31.51 4.45
902 1349 0.172803 GCAAATCCTTCTGCTGCAGG 59.827 55.000 27.79 14.48 35.62 4.85
903 1350 0.885879 TGCAAATCCTTCTGCTGCAG 59.114 50.000 23.31 23.31 38.06 4.41
904 1351 1.000060 GTTGCAAATCCTTCTGCTGCA 60.000 47.619 0.00 0.88 41.06 4.41
905 1352 1.670967 GGTTGCAAATCCTTCTGCTGC 60.671 52.381 0.00 0.00 39.38 5.25
906 1353 1.614903 TGGTTGCAAATCCTTCTGCTG 59.385 47.619 0.00 0.00 39.38 4.41
907 1354 1.891150 CTGGTTGCAAATCCTTCTGCT 59.109 47.619 0.00 0.00 39.38 4.24
908 1355 1.615392 ACTGGTTGCAAATCCTTCTGC 59.385 47.619 0.00 0.00 39.09 4.26
909 1356 3.119708 GCTACTGGTTGCAAATCCTTCTG 60.120 47.826 0.00 0.00 0.00 3.02
910 1357 3.084786 GCTACTGGTTGCAAATCCTTCT 58.915 45.455 0.00 0.00 0.00 2.85
911 1358 2.819608 TGCTACTGGTTGCAAATCCTTC 59.180 45.455 0.00 0.00 38.30 3.46
912 1359 2.875296 TGCTACTGGTTGCAAATCCTT 58.125 42.857 0.00 0.00 38.30 3.36
913 1360 2.584835 TGCTACTGGTTGCAAATCCT 57.415 45.000 0.00 0.00 38.30 3.24
918 1365 1.066908 GCTGTTTGCTACTGGTTGCAA 59.933 47.619 15.89 15.89 46.26 4.08
919 1366 0.667993 GCTGTTTGCTACTGGTTGCA 59.332 50.000 5.83 5.83 39.38 4.08
920 1367 0.039165 GGCTGTTTGCTACTGGTTGC 60.039 55.000 0.60 0.60 42.39 4.17
921 1368 0.598065 GGGCTGTTTGCTACTGGTTG 59.402 55.000 0.00 0.00 42.39 3.77
922 1369 0.889186 CGGGCTGTTTGCTACTGGTT 60.889 55.000 0.00 0.00 42.39 3.67
923 1370 1.302511 CGGGCTGTTTGCTACTGGT 60.303 57.895 0.00 0.00 42.39 4.00
924 1371 1.302511 ACGGGCTGTTTGCTACTGG 60.303 57.895 0.00 0.00 42.39 4.00
925 1372 1.577328 CCACGGGCTGTTTGCTACTG 61.577 60.000 0.00 0.00 42.39 2.74
926 1373 1.302511 CCACGGGCTGTTTGCTACT 60.303 57.895 0.00 0.00 42.39 2.57
927 1374 1.298859 CTCCACGGGCTGTTTGCTAC 61.299 60.000 0.00 0.00 42.39 3.58
928 1375 1.003839 CTCCACGGGCTGTTTGCTA 60.004 57.895 0.00 0.00 42.39 3.49
929 1376 2.281761 CTCCACGGGCTGTTTGCT 60.282 61.111 0.00 0.00 42.39 3.91
930 1377 2.193536 AACTCCACGGGCTGTTTGC 61.194 57.895 0.00 0.00 41.94 3.68
931 1378 0.817634 TCAACTCCACGGGCTGTTTG 60.818 55.000 0.00 0.00 0.00 2.93
932 1379 0.110486 ATCAACTCCACGGGCTGTTT 59.890 50.000 0.00 0.00 0.00 2.83
933 1380 0.981183 TATCAACTCCACGGGCTGTT 59.019 50.000 0.00 0.00 0.00 3.16
934 1381 0.537188 CTATCAACTCCACGGGCTGT 59.463 55.000 0.00 0.00 0.00 4.40
935 1382 0.824109 TCTATCAACTCCACGGGCTG 59.176 55.000 0.00 0.00 0.00 4.85
936 1383 1.689273 GATCTATCAACTCCACGGGCT 59.311 52.381 0.00 0.00 0.00 5.19
1053 1503 2.185867 GCCTTGGCCGTATGTCGA 59.814 61.111 0.00 0.00 42.86 4.20
1075 1525 2.920912 AGGAAAGGGGTGCGTCGA 60.921 61.111 0.00 0.00 0.00 4.20
1080 1530 2.035783 GGGTGAGGAAAGGGGTGC 59.964 66.667 0.00 0.00 0.00 5.01
1082 1532 0.426022 ATAGGGGTGAGGAAAGGGGT 59.574 55.000 0.00 0.00 0.00 4.95
1147 1597 4.951963 GCCTCGATCGCGGAAGGG 62.952 72.222 27.60 13.82 46.71 3.95
1189 1639 1.587613 GCTGACGTCGCCTGAGATC 60.588 63.158 17.73 0.00 0.00 2.75
1258 1708 4.959839 GGAGAACCAGGAGAAGAGATAACT 59.040 45.833 0.00 0.00 35.97 2.24
1307 1757 2.566724 GGCTGATGGATAAGAGAGGGAG 59.433 54.545 0.00 0.00 0.00 4.30
1318 1768 2.073252 TACTCTCACGGCTGATGGAT 57.927 50.000 0.00 0.00 0.00 3.41
1352 1802 3.309296 TCTCTCTCTCTCTCTCTCCCTC 58.691 54.545 0.00 0.00 0.00 4.30
1353 1803 3.051803 TCTCTCTCTCTCTCTCTCTCCCT 60.052 52.174 0.00 0.00 0.00 4.20
1354 1804 3.309296 TCTCTCTCTCTCTCTCTCTCCC 58.691 54.545 0.00 0.00 0.00 4.30
1355 1805 3.244044 GCTCTCTCTCTCTCTCTCTCTCC 60.244 56.522 0.00 0.00 0.00 3.71
1356 1806 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
1357 1807 3.378512 TGCTCTCTCTCTCTCTCTCTCT 58.621 50.000 0.00 0.00 0.00 3.10
1358 1808 3.827008 TGCTCTCTCTCTCTCTCTCTC 57.173 52.381 0.00 0.00 0.00 3.20
1359 1809 3.181447 CCATGCTCTCTCTCTCTCTCTCT 60.181 52.174 0.00 0.00 0.00 3.10
1360 1810 3.144506 CCATGCTCTCTCTCTCTCTCTC 58.855 54.545 0.00 0.00 0.00 3.20
1361 1811 2.158564 CCCATGCTCTCTCTCTCTCTCT 60.159 54.545 0.00 0.00 0.00 3.10
1427 1954 4.282195 TGATAAAACGAAATGCCCCACTTT 59.718 37.500 0.00 0.00 0.00 2.66
1428 1955 3.829601 TGATAAAACGAAATGCCCCACTT 59.170 39.130 0.00 0.00 0.00 3.16
1429 1956 3.426615 TGATAAAACGAAATGCCCCACT 58.573 40.909 0.00 0.00 0.00 4.00
1430 1957 3.859411 TGATAAAACGAAATGCCCCAC 57.141 42.857 0.00 0.00 0.00 4.61
1431 1958 4.873746 TTTGATAAAACGAAATGCCCCA 57.126 36.364 0.00 0.00 0.00 4.96
1432 1959 5.462068 GCTATTTGATAAAACGAAATGCCCC 59.538 40.000 0.00 0.00 0.00 5.80
1505 2045 4.326548 GCGCTAAATACTCAAAGTCGAAGT 59.673 41.667 0.00 0.00 0.00 3.01
1546 2086 3.204827 CGGGCGCTTCCATCAAGG 61.205 66.667 7.64 0.00 36.21 3.61
1547 2087 3.204827 CCGGGCGCTTCCATCAAG 61.205 66.667 7.64 0.00 36.21 3.02
1656 2196 1.430632 CTTTGCTACTGCCATGCCG 59.569 57.895 0.00 0.00 38.71 5.69
1658 2198 1.140375 GCCTTTGCTACTGCCATGC 59.860 57.895 0.00 0.00 38.71 4.06
1714 2254 4.961099 AGGGTTACTGACAGGGAGTAATAC 59.039 45.833 7.51 0.00 38.02 1.89
1715 2255 5.216665 AGGGTTACTGACAGGGAGTAATA 57.783 43.478 7.51 0.00 38.02 0.98
1716 2256 4.076175 AGGGTTACTGACAGGGAGTAAT 57.924 45.455 7.51 0.00 38.02 1.89
1791 2331 7.897575 ACAGAATCTTTATCATCCGAATAGC 57.102 36.000 0.00 0.00 0.00 2.97
1908 2451 9.088512 GGAACTACTGAACAATGTATTACTGAG 57.911 37.037 0.00 0.00 0.00 3.35
2227 2795 0.874390 TCAACGGCAATCTTGTCTGC 59.126 50.000 0.00 0.00 37.86 4.26
2228 2796 3.837213 AATCAACGGCAATCTTGTCTG 57.163 42.857 0.00 0.00 0.00 3.51
2240 2808 5.410067 AGTGCATTTTGGATTAATCAACGG 58.590 37.500 17.07 2.89 0.00 4.44
2344 2912 6.210385 TGCATTTTGGATTAACCTAGAGCAAA 59.790 34.615 0.00 0.00 39.86 3.68
2714 3283 9.559958 CATTTAAGAACAATGTTGACAGGATAC 57.440 33.333 2.20 0.00 0.00 2.24
2853 3422 6.957631 TGTCACTTACTGAATTACCATCCAT 58.042 36.000 0.00 0.00 0.00 3.41
2934 3554 5.515106 TGGGGGTAAAAAGATCCATAAGTG 58.485 41.667 0.00 0.00 0.00 3.16
2935 3555 5.806955 TGGGGGTAAAAAGATCCATAAGT 57.193 39.130 0.00 0.00 0.00 2.24
2936 3556 7.675161 AAATGGGGGTAAAAAGATCCATAAG 57.325 36.000 0.00 0.00 34.31 1.73
2937 3557 9.562226 TTTAAATGGGGGTAAAAAGATCCATAA 57.438 29.630 0.00 0.00 34.31 1.90
2938 3558 9.736819 ATTTAAATGGGGGTAAAAAGATCCATA 57.263 29.630 0.00 0.00 34.31 2.74
2939 3559 8.637108 ATTTAAATGGGGGTAAAAAGATCCAT 57.363 30.769 0.00 0.00 36.66 3.41
2940 3560 8.456221 AATTTAAATGGGGGTAAAAAGATCCA 57.544 30.769 0.39 0.00 0.00 3.41
2941 3561 9.747898 AAAATTTAAATGGGGGTAAAAAGATCC 57.252 29.630 0.39 0.00 0.00 3.36
2948 3568 9.868160 ACATTCAAAAATTTAAATGGGGGTAAA 57.132 25.926 17.92 0.00 34.23 2.01
2977 3597 8.676401 GGCCAATTAAGCAATTTAAAATGTGAT 58.324 29.630 0.00 0.00 35.03 3.06
2978 3598 7.120432 GGGCCAATTAAGCAATTTAAAATGTGA 59.880 33.333 4.39 0.00 35.03 3.58
2979 3599 7.094463 TGGGCCAATTAAGCAATTTAAAATGTG 60.094 33.333 2.13 0.00 35.03 3.21
2980 3600 6.944862 TGGGCCAATTAAGCAATTTAAAATGT 59.055 30.769 2.13 0.00 35.03 2.71
2981 3601 7.388460 TGGGCCAATTAAGCAATTTAAAATG 57.612 32.000 2.13 0.00 35.03 2.32
2982 3602 7.669304 AGTTGGGCCAATTAAGCAATTTAAAAT 59.331 29.630 23.95 0.00 35.03 1.82
2983 3603 7.001073 AGTTGGGCCAATTAAGCAATTTAAAA 58.999 30.769 23.95 0.00 35.03 1.52
2984 3604 6.538263 AGTTGGGCCAATTAAGCAATTTAAA 58.462 32.000 23.95 0.00 35.03 1.52
3174 3804 5.758296 ACTATAACACACACAGTTTCAGTGG 59.242 40.000 0.00 0.00 41.21 4.00
3340 3971 4.368874 TCCACATCAGTGTTGTTGTTTG 57.631 40.909 4.03 0.00 44.39 2.93
3364 3995 4.408182 ACGTTCCCATCAGGATAAGAAG 57.592 45.455 0.00 0.00 46.94 2.85
3381 4012 5.178809 ACAAAGCTAGCGAATAAGAAACGTT 59.821 36.000 9.55 0.00 0.00 3.99
3383 4014 5.163992 TGACAAAGCTAGCGAATAAGAAACG 60.164 40.000 9.55 0.00 0.00 3.60
3457 4089 0.531974 TTCACGCGCTCCTGAAAAGT 60.532 50.000 5.73 0.00 0.00 2.66
3458 4090 0.164647 CTTCACGCGCTCCTGAAAAG 59.835 55.000 5.73 0.00 0.00 2.27
3460 4092 2.317609 GCTTCACGCGCTCCTGAAA 61.318 57.895 5.73 0.00 0.00 2.69
3508 4141 5.455392 CGTCGGGTTAGTATAGTTATGTGG 58.545 45.833 0.00 0.00 0.00 4.17
3613 4252 0.178301 CTTTTACGGCCTCTCCTCCC 59.822 60.000 0.00 0.00 0.00 4.30
3625 4264 2.489971 TCACACTTGGGAGCTTTTACG 58.510 47.619 0.00 0.00 0.00 3.18
3692 4333 4.178540 TGATCACGATTAGGAAACGGTTC 58.821 43.478 4.08 4.08 0.00 3.62
3713 4354 2.124403 GGCCCTGGAGCTGTCATG 60.124 66.667 0.00 0.00 0.00 3.07
3872 4514 7.773690 GCCCTGAGAAAGTTCCATAAATAAGTA 59.226 37.037 0.00 0.00 0.00 2.24
3874 4516 6.603201 TGCCCTGAGAAAGTTCCATAAATAAG 59.397 38.462 0.00 0.00 0.00 1.73
3896 4538 2.359975 CCCGGTTCCTTGTCTGCC 60.360 66.667 0.00 0.00 0.00 4.85
3977 4621 3.879295 CAGAGGAAAACTTGACTGAGCAA 59.121 43.478 0.00 0.00 0.00 3.91
4074 4720 0.034186 TTCATGGAGGCATGGACACC 60.034 55.000 0.00 0.00 33.61 4.16
4075 4721 2.062971 ATTCATGGAGGCATGGACAC 57.937 50.000 0.00 0.00 33.61 3.67
4152 4811 3.202097 TGTCTTGCACGATCTCACAAAA 58.798 40.909 0.00 0.00 0.00 2.44
4157 4816 1.432514 GCTTGTCTTGCACGATCTCA 58.567 50.000 0.00 0.00 0.00 3.27
4164 4823 2.748461 TTGTTACGCTTGTCTTGCAC 57.252 45.000 0.00 0.00 0.00 4.57
4167 4826 4.658071 ACACTTTTGTTACGCTTGTCTTG 58.342 39.130 0.00 0.00 28.43 3.02
4187 4846 7.425882 CAGTTGTAACACGAAATAAAACGAACA 59.574 33.333 0.00 0.00 0.00 3.18
4188 4847 7.635587 TCAGTTGTAACACGAAATAAAACGAAC 59.364 33.333 0.00 0.00 0.00 3.95
4234 4893 9.271921 TGGACATAGAATGCCACTCTATTATAT 57.728 33.333 0.00 0.00 34.53 0.86
4236 4895 7.559335 TGGACATAGAATGCCACTCTATTAT 57.441 36.000 0.00 0.00 34.53 1.28
4237 4896 6.994421 TGGACATAGAATGCCACTCTATTA 57.006 37.500 0.00 0.00 34.53 0.98
4238 4897 5.894298 TGGACATAGAATGCCACTCTATT 57.106 39.130 0.00 0.00 34.53 1.73
4239 4898 5.894298 TTGGACATAGAATGCCACTCTAT 57.106 39.130 0.00 0.00 36.71 1.98
4338 5000 8.970691 ATGTCAAGGAAAATAAAAATCTGTCG 57.029 30.769 0.00 0.00 0.00 4.35
4421 5083 4.364686 TCCCCCTCCTTCACCCCC 62.365 72.222 0.00 0.00 0.00 5.40
4432 5094 3.648545 GACATAAGATTAGTGCTCCCCCT 59.351 47.826 0.00 0.00 0.00 4.79
4435 5097 4.965200 AGGACATAAGATTAGTGCTCCC 57.035 45.455 0.00 0.00 26.86 4.30
4468 5390 2.806745 CGCCAGTTCTTCCTCAGTTCAA 60.807 50.000 0.00 0.00 0.00 2.69
4509 5431 0.482887 TGACTGACCACCCTCTGAGA 59.517 55.000 6.17 0.00 0.00 3.27
4522 5461 1.123861 AAGCAGCTGGAGGTGACTGA 61.124 55.000 17.12 0.00 45.66 3.41
4549 5488 3.953612 AGAGAAGATGAGCAGTGGTAGAG 59.046 47.826 0.00 0.00 0.00 2.43
4553 5492 2.255406 ACAGAGAAGATGAGCAGTGGT 58.745 47.619 0.00 0.00 0.00 4.16
4554 5493 3.331478 AACAGAGAAGATGAGCAGTGG 57.669 47.619 0.00 0.00 0.00 4.00
4555 5494 4.567971 AGAAACAGAGAAGATGAGCAGTG 58.432 43.478 0.00 0.00 0.00 3.66
4586 5525 5.679734 TGAGATGTTTGCAAAGAGAGAAC 57.320 39.130 13.26 0.00 0.00 3.01
4627 5566 2.673833 GAGGACGTTGACAACTTCGAT 58.326 47.619 16.02 8.47 31.02 3.59
4655 5603 2.038557 ACTCTGCCTTGGACGTTAACAT 59.961 45.455 6.39 0.00 0.00 2.71
4675 5623 1.139095 CTACTGGGGCTTCGACGAC 59.861 63.158 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.