Multiple sequence alignment - TraesCS5A01G185700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G185700 chr5A 100.000 4243 0 0 1 4243 386161199 386165441 0.000000e+00 7836.0
1 TraesCS5A01G185700 chr5A 83.084 467 62 9 2197 2650 385956236 385956698 3.950000e-110 409.0
2 TraesCS5A01G185700 chr5A 78.207 569 90 20 1106 1669 385955402 385955941 2.440000e-87 333.0
3 TraesCS5A01G185700 chr5D 90.052 2312 152 42 1964 4243 293164034 293166299 0.000000e+00 2924.0
4 TraesCS5A01G185700 chr5D 87.477 1070 45 30 734 1746 293162914 293163951 0.000000e+00 1151.0
5 TraesCS5A01G185700 chr5D 86.548 394 26 16 18 395 293161912 293162294 3.950000e-110 409.0
6 TraesCS5A01G185700 chr5D 82.979 470 60 13 2197 2650 293096387 293096852 1.420000e-109 407.0
7 TraesCS5A01G185700 chr5D 94.521 73 3 1 1745 1816 293163974 293164046 1.250000e-20 111.0
8 TraesCS5A01G185700 chr5B 93.204 1236 63 10 3010 4243 334684778 334685994 0.000000e+00 1797.0
9 TraesCS5A01G185700 chr5B 90.936 1026 55 14 1964 2968 334683468 334684476 0.000000e+00 1345.0
10 TraesCS5A01G185700 chr5B 90.754 703 38 11 1050 1746 334682704 334683385 0.000000e+00 913.0
11 TraesCS5A01G185700 chr5B 91.152 486 31 6 393 877 334681693 334682167 0.000000e+00 649.0
12 TraesCS5A01G185700 chr5B 82.626 495 67 11 2166 2650 334594317 334594802 1.820000e-113 420.0
13 TraesCS5A01G185700 chr5B 83.863 409 29 24 1 396 334681251 334681635 5.220000e-94 355.0
14 TraesCS5A01G185700 chr5B 94.521 73 3 1 1745 1816 334683408 334683480 1.250000e-20 111.0
15 TraesCS5A01G185700 chr5B 94.340 53 3 0 880 932 334682193 334682245 9.780000e-12 82.4
16 TraesCS5A01G185700 chr6D 82.915 597 63 20 3651 4243 413021400 413020839 6.330000e-138 501.0
17 TraesCS5A01G185700 chr6D 81.879 596 64 19 3651 4243 25491086 25490532 2.990000e-126 462.0
18 TraesCS5A01G185700 chr4D 82.886 596 65 18 3651 4243 506092032 506091471 6.330000e-138 501.0
19 TraesCS5A01G185700 chr7A 81.667 600 70 18 3648 4243 32950844 32951407 2.990000e-126 462.0
20 TraesCS5A01G185700 chr7A 96.528 144 5 0 1808 1951 611282538 611282395 5.480000e-59 239.0
21 TraesCS5A01G185700 chr6A 81.407 597 72 21 3651 4243 594276095 594275534 6.470000e-123 451.0
22 TraesCS5A01G185700 chr6A 96.552 145 4 1 1807 1951 446526553 446526696 5.480000e-59 239.0
23 TraesCS5A01G185700 chr3A 81.407 597 72 21 3651 4243 479686454 479685893 6.470000e-123 451.0
24 TraesCS5A01G185700 chr4A 82.136 487 55 21 3756 4237 648977024 648976565 5.140000e-104 388.0
25 TraesCS5A01G185700 chr2A 98.561 139 2 0 1813 1951 778800570 778800708 3.280000e-61 246.0
26 TraesCS5A01G185700 chr2A 95.973 149 5 1 1804 1951 470645832 470645684 1.520000e-59 241.0
27 TraesCS5A01G185700 chr1A 97.842 139 3 0 1813 1951 508278061 508278199 1.520000e-59 241.0
28 TraesCS5A01G185700 chr1A 97.842 139 3 0 1813 1951 508305387 508305525 1.520000e-59 241.0
29 TraesCS5A01G185700 chr1A 97.842 139 3 0 1813 1951 508310271 508310409 1.520000e-59 241.0
30 TraesCS5A01G185700 chr1A 97.842 139 3 0 1813 1951 508336985 508337123 1.520000e-59 241.0
31 TraesCS5A01G185700 chr1A 96.503 143 5 0 1813 1955 354935843 354935701 1.970000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G185700 chr5A 386161199 386165441 4242 False 7836.000000 7836 100.000000 1 4243 1 chr5A.!!$F1 4242
1 TraesCS5A01G185700 chr5A 385955402 385956698 1296 False 371.000000 409 80.645500 1106 2650 2 chr5A.!!$F2 1544
2 TraesCS5A01G185700 chr5D 293161912 293166299 4387 False 1148.750000 2924 89.649500 18 4243 4 chr5D.!!$F2 4225
3 TraesCS5A01G185700 chr5B 334681251 334685994 4743 False 750.342857 1797 91.252857 1 4243 7 chr5B.!!$F2 4242
4 TraesCS5A01G185700 chr6D 413020839 413021400 561 True 501.000000 501 82.915000 3651 4243 1 chr6D.!!$R2 592
5 TraesCS5A01G185700 chr6D 25490532 25491086 554 True 462.000000 462 81.879000 3651 4243 1 chr6D.!!$R1 592
6 TraesCS5A01G185700 chr4D 506091471 506092032 561 True 501.000000 501 82.886000 3651 4243 1 chr4D.!!$R1 592
7 TraesCS5A01G185700 chr7A 32950844 32951407 563 False 462.000000 462 81.667000 3648 4243 1 chr7A.!!$F1 595
8 TraesCS5A01G185700 chr6A 594275534 594276095 561 True 451.000000 451 81.407000 3651 4243 1 chr6A.!!$R1 592
9 TraesCS5A01G185700 chr3A 479685893 479686454 561 True 451.000000 451 81.407000 3651 4243 1 chr3A.!!$R1 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 214 0.179111 ACGCGTCCATCCATGTACAG 60.179 55.0 5.58 0.0 0.00 2.74 F
1015 1367 0.102300 TCTCTCCACACACACACACG 59.898 55.0 0.00 0.0 0.00 4.49 F
1896 2704 0.036765 GGATACAACCCACGTCAGCA 60.037 55.0 0.00 0.0 0.00 4.41 F
2033 2841 0.249657 GGAGCTGCTCCTATTGGACG 60.250 60.0 35.51 0.0 46.41 4.79 F
2329 3140 0.304705 CACACCTGCGTTCACAAGAC 59.695 55.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 2685 0.036765 TGCTGACGTGGGTTGTATCC 60.037 55.000 0.00 0.0 0.00 2.59 R
2173 2984 0.107643 TTGTGCACGATCCAGGTCAA 59.892 50.000 13.13 0.0 0.00 3.18 R
2900 3756 0.780637 TCTGTCTCTCAGAGGGTGGT 59.219 55.000 0.57 0.0 46.77 4.16 R
2987 3860 0.921256 AGAATGGGGGTGAAGGAGGG 60.921 60.000 0.00 0.0 0.00 4.30 R
3797 4953 1.463018 ATGATGGGGAGGAGAGGCC 60.463 63.158 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 0.537143 GCACCATTCGGCCCATCATA 60.537 55.000 0.00 0.00 34.57 2.15
41 43 1.887956 GCACCATTCGGCCCATCATAT 60.888 52.381 0.00 0.00 34.57 1.78
42 44 2.086869 CACCATTCGGCCCATCATATC 58.913 52.381 0.00 0.00 34.57 1.63
62 64 2.027561 TCCCCGGTATGAACAAGACAAG 60.028 50.000 0.00 0.00 0.00 3.16
65 67 1.737793 CGGTATGAACAAGACAAGGCC 59.262 52.381 0.00 0.00 0.00 5.19
76 78 2.203139 CAAGGCCACCACGTCACA 60.203 61.111 5.01 0.00 0.00 3.58
77 79 1.600636 CAAGGCCACCACGTCACAT 60.601 57.895 5.01 0.00 0.00 3.21
103 105 1.369091 GCCTTGAGCGTGTATGGGTG 61.369 60.000 0.00 0.00 0.00 4.61
121 123 0.969149 TGCCTATCAGCCTATCACGG 59.031 55.000 0.00 0.00 0.00 4.94
137 139 0.796312 ACGGCGACTTACTTTGCATG 59.204 50.000 16.62 0.00 0.00 4.06
169 173 3.650942 TCTAGGAGTGGCAAAGGAAAGAA 59.349 43.478 0.00 0.00 0.00 2.52
170 174 2.868899 AGGAGTGGCAAAGGAAAGAAG 58.131 47.619 0.00 0.00 0.00 2.85
171 175 2.443255 AGGAGTGGCAAAGGAAAGAAGA 59.557 45.455 0.00 0.00 0.00 2.87
172 176 2.554462 GGAGTGGCAAAGGAAAGAAGAC 59.446 50.000 0.00 0.00 0.00 3.01
173 177 3.214328 GAGTGGCAAAGGAAAGAAGACA 58.786 45.455 0.00 0.00 0.00 3.41
174 178 3.823304 GAGTGGCAAAGGAAAGAAGACAT 59.177 43.478 0.00 0.00 0.00 3.06
175 179 3.571401 AGTGGCAAAGGAAAGAAGACATG 59.429 43.478 0.00 0.00 0.00 3.21
176 180 3.319122 GTGGCAAAGGAAAGAAGACATGT 59.681 43.478 0.00 0.00 0.00 3.21
180 184 5.098211 GCAAAGGAAAGAAGACATGTATGC 58.902 41.667 0.00 0.00 0.00 3.14
201 209 2.585869 GCGTACGCGTCCATCCATG 61.586 63.158 26.17 3.12 40.81 3.66
202 210 1.226859 CGTACGCGTCCATCCATGT 60.227 57.895 18.63 0.00 0.00 3.21
204 212 1.484356 GTACGCGTCCATCCATGTAC 58.516 55.000 18.63 0.00 0.00 2.90
205 213 1.104630 TACGCGTCCATCCATGTACA 58.895 50.000 18.63 0.00 0.00 2.90
206 214 0.179111 ACGCGTCCATCCATGTACAG 60.179 55.000 5.58 0.00 0.00 2.74
209 217 1.134818 GCGTCCATCCATGTACAGTCA 60.135 52.381 0.33 0.00 0.00 3.41
210 218 2.483714 GCGTCCATCCATGTACAGTCAT 60.484 50.000 0.33 0.00 0.00 3.06
211 219 3.126073 CGTCCATCCATGTACAGTCATG 58.874 50.000 0.33 2.93 43.14 3.07
217 236 4.751767 TCCATGTACAGTCATGCATGTA 57.248 40.909 25.43 10.12 42.44 2.29
218 237 4.696455 TCCATGTACAGTCATGCATGTAG 58.304 43.478 25.43 17.84 42.44 2.74
224 243 1.819208 GTCATGCATGTAGCCGCCA 60.819 57.895 25.43 1.24 44.83 5.69
358 384 6.010850 TGTATAGCCAATAGGTCTCGAGATT 58.989 40.000 19.90 12.66 37.19 2.40
376 402 3.703052 AGATTGAATTGCCTGTCCCATTC 59.297 43.478 0.00 0.00 0.00 2.67
383 409 5.859205 ATTGCCTGTCCCATTCTTATTTC 57.141 39.130 0.00 0.00 0.00 2.17
385 411 3.269381 TGCCTGTCCCATTCTTATTTCCT 59.731 43.478 0.00 0.00 0.00 3.36
389 415 6.633856 CCTGTCCCATTCTTATTTCCTTTTG 58.366 40.000 0.00 0.00 0.00 2.44
390 416 6.437162 CCTGTCCCATTCTTATTTCCTTTTGA 59.563 38.462 0.00 0.00 0.00 2.69
391 417 7.124750 CCTGTCCCATTCTTATTTCCTTTTGAT 59.875 37.037 0.00 0.00 0.00 2.57
407 495 0.804364 TGATGATGTCGTGGCTTTGC 59.196 50.000 0.00 0.00 0.00 3.68
431 527 6.021232 GCGGTTTTTAGAACACTAAAACACAC 60.021 38.462 12.61 9.51 42.17 3.82
454 550 4.688879 CGAAAGCATGAATATAGCCCGTAA 59.311 41.667 0.00 0.00 0.00 3.18
549 645 1.538047 CATGGGACCACCTCTTGTTG 58.462 55.000 0.00 0.00 41.11 3.33
572 668 0.855598 ATCCTTGGGGCAGTGCATAT 59.144 50.000 18.61 0.00 0.00 1.78
582 679 3.244181 GGGCAGTGCATATAAATTTGGGG 60.244 47.826 18.61 0.00 0.00 4.96
696 793 9.836179 ATAGTATCTATGAAAATCCCTGACTCT 57.164 33.333 0.00 0.00 0.00 3.24
730 829 6.186957 ACAAAGCCAAAGGGAAATTTCTTTT 58.813 32.000 17.42 14.49 35.59 2.27
732 831 4.136796 AGCCAAAGGGAAATTTCTTTTGC 58.863 39.130 26.13 21.25 40.03 3.68
737 836 7.361201 GCCAAAGGGAAATTTCTTTTGCTATTC 60.361 37.037 26.13 15.94 38.10 1.75
751 1068 5.594724 TTGCTATTCAACATTTTTGCTGC 57.405 34.783 0.00 0.00 0.00 5.25
779 1096 2.133641 GGTGCAGTTGGCCCAAACT 61.134 57.895 0.00 0.32 43.89 2.66
786 1103 4.242475 GCAGTTGGCCCAAACTAATAAAC 58.758 43.478 8.08 0.00 38.34 2.01
789 1106 5.046663 CAGTTGGCCCAAACTAATAAACCAT 60.047 40.000 8.08 0.00 38.34 3.55
790 1107 5.546110 AGTTGGCCCAAACTAATAAACCATT 59.454 36.000 6.68 0.00 38.62 3.16
791 1108 5.413309 TGGCCCAAACTAATAAACCATTG 57.587 39.130 0.00 0.00 0.00 2.82
792 1109 4.841246 TGGCCCAAACTAATAAACCATTGT 59.159 37.500 0.00 0.00 0.00 2.71
793 1110 5.046950 TGGCCCAAACTAATAAACCATTGTC 60.047 40.000 0.00 0.00 0.00 3.18
794 1111 5.416083 GCCCAAACTAATAAACCATTGTCC 58.584 41.667 0.00 0.00 0.00 4.02
795 1112 5.046950 GCCCAAACTAATAAACCATTGTCCA 60.047 40.000 0.00 0.00 0.00 4.02
796 1113 6.351796 GCCCAAACTAATAAACCATTGTCCAT 60.352 38.462 0.00 0.00 0.00 3.41
862 1182 5.746990 ATCTAGGAATCCATTAACTCCGG 57.253 43.478 0.61 0.00 32.91 5.14
962 1308 5.952347 TTAAATACACCTCCTCCCTTCTC 57.048 43.478 0.00 0.00 0.00 2.87
976 1322 1.418334 CTTCTCCCCGATCACATCCT 58.582 55.000 0.00 0.00 0.00 3.24
982 1328 2.104792 TCCCCGATCACATCCTCATTTC 59.895 50.000 0.00 0.00 0.00 2.17
1015 1367 0.102300 TCTCTCCACACACACACACG 59.898 55.000 0.00 0.00 0.00 4.49
1023 1375 1.375396 ACACACACACGCACACACT 60.375 52.632 0.00 0.00 0.00 3.55
1033 1385 1.721487 GCACACACTCACACACACC 59.279 57.895 0.00 0.00 0.00 4.16
1045 1417 1.270839 ACACACACCCTTCCGATCTTG 60.271 52.381 0.00 0.00 0.00 3.02
1064 1748 3.752412 TGCATTTGCTCTGAGAAATCG 57.248 42.857 9.28 0.00 42.66 3.34
1067 1751 3.242673 GCATTTGCTCTGAGAAATCGGAG 60.243 47.826 9.28 9.30 43.95 4.63
1077 1761 4.804597 TGAGAAATCGGAGAGGAATCCTA 58.195 43.478 0.00 0.00 43.63 2.94
1094 1778 1.630148 CTACACCGGCGAGAAAGAAG 58.370 55.000 9.30 0.00 0.00 2.85
1236 1920 2.435586 CCCGACCTCTGCAAGCTG 60.436 66.667 0.00 0.00 0.00 4.24
1267 1951 3.701604 ATCTTCGCCGTCACCGAGC 62.702 63.158 0.00 0.00 35.96 5.03
1434 2118 2.031012 GCCAAAACCCCTTGCAGC 59.969 61.111 0.00 0.00 0.00 5.25
1451 2135 2.985139 GCAGCTGCAGAGAAATTGTTTC 59.015 45.455 33.36 0.00 41.59 2.78
1452 2136 3.551454 GCAGCTGCAGAGAAATTGTTTCA 60.551 43.478 33.36 0.00 40.47 2.69
1453 2137 4.227538 CAGCTGCAGAGAAATTGTTTCAG 58.772 43.478 20.43 0.00 42.10 3.02
1454 2138 3.255149 AGCTGCAGAGAAATTGTTTCAGG 59.745 43.478 20.43 0.00 42.10 3.86
1458 2142 6.017400 TGCAGAGAAATTGTTTCAGGATTC 57.983 37.500 5.36 0.00 42.10 2.52
1462 2146 7.576287 GCAGAGAAATTGTTTCAGGATTCATCA 60.576 37.037 5.36 0.00 42.10 3.07
1463 2147 8.301720 CAGAGAAATTGTTTCAGGATTCATCAA 58.698 33.333 5.36 0.00 42.10 2.57
1464 2148 9.032624 AGAGAAATTGTTTCAGGATTCATCAAT 57.967 29.630 5.36 0.00 42.10 2.57
1465 2149 9.298774 GAGAAATTGTTTCAGGATTCATCAATC 57.701 33.333 5.36 0.00 42.10 2.67
1466 2150 8.809066 AGAAATTGTTTCAGGATTCATCAATCA 58.191 29.630 5.36 0.00 39.99 2.57
1467 2151 9.595823 GAAATTGTTTCAGGATTCATCAATCAT 57.404 29.630 0.00 0.00 38.76 2.45
1534 2248 1.902508 TCTTGGATTCGCAGGAAGACT 59.097 47.619 0.00 0.00 35.19 3.24
1573 2287 3.453070 GATCAGGGTGAGCTCGGCC 62.453 68.421 16.26 16.26 28.67 6.13
1636 2350 0.175989 GGAAGTACGGCCAGAAGGAG 59.824 60.000 2.24 0.00 36.89 3.69
1694 2409 3.762779 CATTTCGGCCAAAGTTCATCTC 58.237 45.455 2.24 0.00 0.00 2.75
1718 2436 6.260050 TCTCATTTCAAATAGTAATCCGCACC 59.740 38.462 0.00 0.00 0.00 5.01
1808 2616 1.552792 TGGCGTCCACATGTCAGATAA 59.447 47.619 0.00 0.00 0.00 1.75
1809 2617 2.205074 GGCGTCCACATGTCAGATAAG 58.795 52.381 0.00 0.00 0.00 1.73
1810 2618 2.159099 GGCGTCCACATGTCAGATAAGA 60.159 50.000 0.00 0.00 0.00 2.10
1811 2619 3.521560 GCGTCCACATGTCAGATAAGAA 58.478 45.455 0.00 0.00 0.00 2.52
1812 2620 4.122776 GCGTCCACATGTCAGATAAGAAT 58.877 43.478 0.00 0.00 0.00 2.40
1813 2621 4.025396 GCGTCCACATGTCAGATAAGAATG 60.025 45.833 0.00 0.00 0.00 2.67
1814 2622 4.509230 CGTCCACATGTCAGATAAGAATGG 59.491 45.833 0.00 0.00 0.00 3.16
1815 2623 4.818546 GTCCACATGTCAGATAAGAATGGG 59.181 45.833 0.00 0.00 0.00 4.00
1816 2624 4.721274 TCCACATGTCAGATAAGAATGGGA 59.279 41.667 0.00 0.00 0.00 4.37
1817 2625 5.061853 CCACATGTCAGATAAGAATGGGAG 58.938 45.833 0.00 0.00 0.00 4.30
1818 2626 5.397221 CCACATGTCAGATAAGAATGGGAGT 60.397 44.000 0.00 0.00 0.00 3.85
1819 2627 6.183361 CCACATGTCAGATAAGAATGGGAGTA 60.183 42.308 0.00 0.00 0.00 2.59
1820 2628 6.703607 CACATGTCAGATAAGAATGGGAGTAC 59.296 42.308 0.00 0.00 0.00 2.73
1821 2629 5.871396 TGTCAGATAAGAATGGGAGTACC 57.129 43.478 0.00 0.00 40.81 3.34
1822 2630 5.529289 TGTCAGATAAGAATGGGAGTACCT 58.471 41.667 0.00 0.00 41.11 3.08
1823 2631 6.679542 TGTCAGATAAGAATGGGAGTACCTA 58.320 40.000 0.00 0.00 41.11 3.08
1824 2632 6.778069 TGTCAGATAAGAATGGGAGTACCTAG 59.222 42.308 0.00 0.00 41.11 3.02
1825 2633 7.005296 GTCAGATAAGAATGGGAGTACCTAGA 58.995 42.308 0.00 0.00 41.11 2.43
1826 2634 7.506261 GTCAGATAAGAATGGGAGTACCTAGAA 59.494 40.741 0.00 0.00 41.11 2.10
1827 2635 7.506261 TCAGATAAGAATGGGAGTACCTAGAAC 59.494 40.741 0.00 0.00 41.11 3.01
1828 2636 7.507616 CAGATAAGAATGGGAGTACCTAGAACT 59.492 40.741 0.00 0.00 41.11 3.01
1829 2637 7.726738 AGATAAGAATGGGAGTACCTAGAACTC 59.273 40.741 13.84 13.84 42.19 3.01
1830 2638 5.208294 AGAATGGGAGTACCTAGAACTCA 57.792 43.478 20.28 7.79 44.25 3.41
1831 2639 5.782925 AGAATGGGAGTACCTAGAACTCAT 58.217 41.667 20.28 9.26 44.25 2.90
1832 2640 5.836358 AGAATGGGAGTACCTAGAACTCATC 59.164 44.000 20.28 14.32 44.25 2.92
1833 2641 4.883021 TGGGAGTACCTAGAACTCATCT 57.117 45.455 20.28 0.00 44.25 2.90
1834 2642 5.988865 TGGGAGTACCTAGAACTCATCTA 57.011 43.478 20.28 5.84 44.25 1.98
1852 2660 7.348080 TCATCTAGATGAGACGTAATTTGGT 57.652 36.000 27.93 0.00 42.42 3.67
1853 2661 7.426410 TCATCTAGATGAGACGTAATTTGGTC 58.574 38.462 27.93 1.46 42.42 4.02
1854 2662 7.285629 TCATCTAGATGAGACGTAATTTGGTCT 59.714 37.037 27.93 9.96 45.71 3.85
1862 2670 6.910536 AGACGTAATTTGGTCTCATTCATC 57.089 37.500 5.52 0.00 39.18 2.92
1863 2671 6.644347 AGACGTAATTTGGTCTCATTCATCT 58.356 36.000 5.52 0.00 39.18 2.90
1864 2672 6.536582 AGACGTAATTTGGTCTCATTCATCTG 59.463 38.462 5.52 0.00 39.18 2.90
1865 2673 6.406370 ACGTAATTTGGTCTCATTCATCTGA 58.594 36.000 0.00 0.00 0.00 3.27
1866 2674 6.878923 ACGTAATTTGGTCTCATTCATCTGAA 59.121 34.615 0.00 0.00 38.56 3.02
1867 2675 7.390440 ACGTAATTTGGTCTCATTCATCTGAAA 59.610 33.333 0.00 0.00 37.61 2.69
1868 2676 8.236586 CGTAATTTGGTCTCATTCATCTGAAAA 58.763 33.333 0.00 0.00 37.61 2.29
1869 2677 9.912634 GTAATTTGGTCTCATTCATCTGAAAAA 57.087 29.630 0.00 0.00 37.61 1.94
1870 2678 8.822652 AATTTGGTCTCATTCATCTGAAAAAC 57.177 30.769 0.00 0.00 37.61 2.43
1871 2679 6.957920 TTGGTCTCATTCATCTGAAAAACA 57.042 33.333 0.00 0.00 37.61 2.83
1872 2680 6.957920 TGGTCTCATTCATCTGAAAAACAA 57.042 33.333 0.00 0.00 37.61 2.83
1873 2681 6.973843 TGGTCTCATTCATCTGAAAAACAAG 58.026 36.000 0.00 0.00 37.61 3.16
1874 2682 6.772233 TGGTCTCATTCATCTGAAAAACAAGA 59.228 34.615 0.00 0.00 37.61 3.02
1875 2683 7.285172 TGGTCTCATTCATCTGAAAAACAAGAA 59.715 33.333 0.00 0.00 37.61 2.52
1876 2684 7.592903 GGTCTCATTCATCTGAAAAACAAGAAC 59.407 37.037 0.00 0.00 37.61 3.01
1877 2685 7.322222 GTCTCATTCATCTGAAAAACAAGAACG 59.678 37.037 0.00 0.00 37.61 3.95
1878 2686 6.437928 TCATTCATCTGAAAAACAAGAACGG 58.562 36.000 0.00 0.00 37.61 4.44
1879 2687 6.262049 TCATTCATCTGAAAAACAAGAACGGA 59.738 34.615 0.00 0.00 37.61 4.69
1880 2688 6.633500 TTCATCTGAAAAACAAGAACGGAT 57.367 33.333 0.00 0.00 0.00 4.18
1881 2689 7.737972 TTCATCTGAAAAACAAGAACGGATA 57.262 32.000 0.00 0.00 0.00 2.59
1882 2690 7.129109 TCATCTGAAAAACAAGAACGGATAC 57.871 36.000 0.00 0.00 0.00 2.24
1883 2691 6.708502 TCATCTGAAAAACAAGAACGGATACA 59.291 34.615 0.00 0.00 0.00 2.29
1884 2692 6.928979 TCTGAAAAACAAGAACGGATACAA 57.071 33.333 0.00 0.00 0.00 2.41
1885 2693 6.721321 TCTGAAAAACAAGAACGGATACAAC 58.279 36.000 0.00 0.00 0.00 3.32
1886 2694 5.823353 TGAAAAACAAGAACGGATACAACC 58.177 37.500 0.00 0.00 0.00 3.77
1887 2695 4.841443 AAAACAAGAACGGATACAACCC 57.159 40.909 0.00 0.00 0.00 4.11
1888 2696 3.495434 AACAAGAACGGATACAACCCA 57.505 42.857 0.00 0.00 0.00 4.51
1889 2697 2.774687 ACAAGAACGGATACAACCCAC 58.225 47.619 0.00 0.00 0.00 4.61
1890 2698 1.730064 CAAGAACGGATACAACCCACG 59.270 52.381 0.00 0.00 0.00 4.94
1891 2699 0.971386 AGAACGGATACAACCCACGT 59.029 50.000 0.00 0.00 39.74 4.49
1892 2700 1.067354 AGAACGGATACAACCCACGTC 60.067 52.381 0.00 0.00 36.69 4.34
1893 2701 0.680618 AACGGATACAACCCACGTCA 59.319 50.000 0.00 0.00 36.69 4.35
1894 2702 0.245539 ACGGATACAACCCACGTCAG 59.754 55.000 0.00 0.00 31.39 3.51
1895 2703 1.082117 CGGATACAACCCACGTCAGC 61.082 60.000 0.00 0.00 0.00 4.26
1896 2704 0.036765 GGATACAACCCACGTCAGCA 60.037 55.000 0.00 0.00 0.00 4.41
1897 2705 1.076332 GATACAACCCACGTCAGCAC 58.924 55.000 0.00 0.00 0.00 4.40
1898 2706 0.394938 ATACAACCCACGTCAGCACA 59.605 50.000 0.00 0.00 0.00 4.57
1899 2707 0.531090 TACAACCCACGTCAGCACAC 60.531 55.000 0.00 0.00 0.00 3.82
1900 2708 1.817520 CAACCCACGTCAGCACACA 60.818 57.895 0.00 0.00 0.00 3.72
1901 2709 1.817941 AACCCACGTCAGCACACAC 60.818 57.895 0.00 0.00 0.00 3.82
1902 2710 3.337889 CCCACGTCAGCACACACG 61.338 66.667 0.00 0.00 41.90 4.49
1903 2711 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
1904 2712 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
1905 2713 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
1906 2714 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
1907 2715 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
1908 2716 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
1909 2717 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
1910 2718 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
1911 2719 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
1912 2720 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
1913 2721 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
1914 2722 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
1915 2723 2.285834 GCACACACGCATCTTATAGCAC 60.286 50.000 0.00 0.00 0.00 4.40
1916 2724 2.285220 CACACACGCATCTTATAGCACC 59.715 50.000 0.00 0.00 0.00 5.01
1917 2725 2.093711 ACACACGCATCTTATAGCACCA 60.094 45.455 0.00 0.00 0.00 4.17
1918 2726 2.285220 CACACGCATCTTATAGCACCAC 59.715 50.000 0.00 0.00 0.00 4.16
1919 2727 2.093711 ACACGCATCTTATAGCACCACA 60.094 45.455 0.00 0.00 0.00 4.17
1920 2728 3.133691 CACGCATCTTATAGCACCACAT 58.866 45.455 0.00 0.00 0.00 3.21
1921 2729 3.185188 CACGCATCTTATAGCACCACATC 59.815 47.826 0.00 0.00 0.00 3.06
1922 2730 2.738846 CGCATCTTATAGCACCACATCC 59.261 50.000 0.00 0.00 0.00 3.51
1923 2731 3.743521 GCATCTTATAGCACCACATCCA 58.256 45.455 0.00 0.00 0.00 3.41
1924 2732 4.136796 GCATCTTATAGCACCACATCCAA 58.863 43.478 0.00 0.00 0.00 3.53
1925 2733 4.763793 GCATCTTATAGCACCACATCCAAT 59.236 41.667 0.00 0.00 0.00 3.16
1926 2734 5.335426 GCATCTTATAGCACCACATCCAATG 60.335 44.000 0.00 0.00 0.00 2.82
1927 2735 4.717877 TCTTATAGCACCACATCCAATGG 58.282 43.478 0.00 0.00 43.43 3.16
1928 2736 1.696063 ATAGCACCACATCCAATGGC 58.304 50.000 0.00 0.00 41.31 4.40
1929 2737 0.625316 TAGCACCACATCCAATGGCT 59.375 50.000 0.00 0.00 41.31 4.75
1930 2738 0.625316 AGCACCACATCCAATGGCTA 59.375 50.000 0.00 0.00 41.31 3.93
1931 2739 1.216175 AGCACCACATCCAATGGCTAT 59.784 47.619 0.00 0.00 41.31 2.97
1932 2740 2.442878 AGCACCACATCCAATGGCTATA 59.557 45.455 0.00 0.00 41.31 1.31
1933 2741 3.117550 AGCACCACATCCAATGGCTATAA 60.118 43.478 0.00 0.00 41.31 0.98
1934 2742 3.636300 GCACCACATCCAATGGCTATAAA 59.364 43.478 0.00 0.00 41.31 1.40
1935 2743 4.099266 GCACCACATCCAATGGCTATAAAA 59.901 41.667 0.00 0.00 41.31 1.52
1936 2744 5.737063 GCACCACATCCAATGGCTATAAAAG 60.737 44.000 0.00 0.00 41.31 2.27
1937 2745 4.895297 ACCACATCCAATGGCTATAAAAGG 59.105 41.667 0.00 0.00 41.31 3.11
1938 2746 4.895297 CCACATCCAATGGCTATAAAAGGT 59.105 41.667 0.00 0.00 33.60 3.50
1939 2747 5.221303 CCACATCCAATGGCTATAAAAGGTG 60.221 44.000 0.00 0.00 33.60 4.00
1940 2748 5.593909 CACATCCAATGGCTATAAAAGGTGA 59.406 40.000 0.00 0.00 33.60 4.02
1941 2749 6.096705 CACATCCAATGGCTATAAAAGGTGAA 59.903 38.462 0.00 0.00 33.60 3.18
1942 2750 6.840705 ACATCCAATGGCTATAAAAGGTGAAT 59.159 34.615 0.00 0.00 33.60 2.57
1943 2751 6.713762 TCCAATGGCTATAAAAGGTGAATG 57.286 37.500 0.00 0.00 0.00 2.67
1944 2752 6.430864 TCCAATGGCTATAAAAGGTGAATGA 58.569 36.000 0.00 0.00 0.00 2.57
1945 2753 6.547141 TCCAATGGCTATAAAAGGTGAATGAG 59.453 38.462 0.00 0.00 0.00 2.90
1946 2754 6.547141 CCAATGGCTATAAAAGGTGAATGAGA 59.453 38.462 0.00 0.00 0.00 3.27
1947 2755 7.232127 CCAATGGCTATAAAAGGTGAATGAGAT 59.768 37.037 0.00 0.00 0.00 2.75
1948 2756 7.992754 ATGGCTATAAAAGGTGAATGAGATC 57.007 36.000 0.00 0.00 0.00 2.75
1949 2757 6.899089 TGGCTATAAAAGGTGAATGAGATCA 58.101 36.000 0.00 0.00 0.00 2.92
1950 2758 7.345691 TGGCTATAAAAGGTGAATGAGATCAA 58.654 34.615 0.00 0.00 0.00 2.57
1951 2759 8.000709 TGGCTATAAAAGGTGAATGAGATCAAT 58.999 33.333 0.00 0.00 0.00 2.57
1952 2760 8.510505 GGCTATAAAAGGTGAATGAGATCAATC 58.489 37.037 0.00 0.00 0.00 2.67
1953 2761 9.282569 GCTATAAAAGGTGAATGAGATCAATCT 57.717 33.333 0.00 0.00 40.50 2.40
1956 2764 7.565323 AAAAGGTGAATGAGATCAATCTAGC 57.435 36.000 0.00 0.00 37.25 3.42
1957 2765 5.883685 AGGTGAATGAGATCAATCTAGCA 57.116 39.130 0.00 0.00 37.25 3.49
1958 2766 6.244552 AGGTGAATGAGATCAATCTAGCAA 57.755 37.500 0.00 0.00 37.25 3.91
1959 2767 6.656902 AGGTGAATGAGATCAATCTAGCAAA 58.343 36.000 0.00 0.00 37.25 3.68
1960 2768 7.114754 AGGTGAATGAGATCAATCTAGCAAAA 58.885 34.615 0.00 0.00 37.25 2.44
1961 2769 7.066766 AGGTGAATGAGATCAATCTAGCAAAAC 59.933 37.037 0.00 0.00 37.25 2.43
1962 2770 7.066766 GGTGAATGAGATCAATCTAGCAAAACT 59.933 37.037 0.00 0.00 37.25 2.66
1963 2771 7.909121 GTGAATGAGATCAATCTAGCAAAACTG 59.091 37.037 0.00 0.00 37.25 3.16
1964 2772 7.825761 TGAATGAGATCAATCTAGCAAAACTGA 59.174 33.333 0.00 0.00 37.25 3.41
1965 2773 8.749026 AATGAGATCAATCTAGCAAAACTGAT 57.251 30.769 0.00 0.00 37.25 2.90
1966 2774 9.842775 AATGAGATCAATCTAGCAAAACTGATA 57.157 29.630 0.00 0.00 37.25 2.15
1976 2784 5.717119 AGCAAAACTGATAGGAATAGGGT 57.283 39.130 0.00 0.00 0.00 4.34
1983 2791 3.090037 TGATAGGAATAGGGTAGCGAGC 58.910 50.000 0.00 0.00 0.00 5.03
1988 2796 2.679132 AATAGGGTAGCGAGCGCACG 62.679 60.000 23.09 23.09 44.88 5.34
2033 2841 0.249657 GGAGCTGCTCCTATTGGACG 60.250 60.000 35.51 0.00 46.41 4.79
2034 2842 0.747255 GAGCTGCTCCTATTGGACGA 59.253 55.000 18.80 0.00 37.46 4.20
2041 2852 2.546795 GCTCCTATTGGACGAGTGATGG 60.547 54.545 0.00 0.00 37.46 3.51
2042 2853 1.412710 TCCTATTGGACGAGTGATGGC 59.587 52.381 0.00 0.00 37.46 4.40
2044 2855 0.821517 TATTGGACGAGTGATGGCGT 59.178 50.000 0.00 0.00 44.33 5.68
2045 2856 0.740868 ATTGGACGAGTGATGGCGTG 60.741 55.000 0.00 0.00 41.34 5.34
2046 2857 1.811645 TTGGACGAGTGATGGCGTGA 61.812 55.000 0.00 0.00 41.34 4.35
2051 2862 1.681264 ACGAGTGATGGCGTGATGATA 59.319 47.619 0.00 0.00 39.56 2.15
2052 2863 2.287849 ACGAGTGATGGCGTGATGATAG 60.288 50.000 0.00 0.00 39.56 2.08
2054 2865 3.058224 CGAGTGATGGCGTGATGATAGTA 60.058 47.826 0.00 0.00 0.00 1.82
2063 2874 3.116300 CGTGATGATAGTACTTTGCGCT 58.884 45.455 9.73 0.00 0.00 5.92
2107 2918 5.348418 TCAGAATCGCAAACTTTTCTGAG 57.652 39.130 9.48 0.00 45.45 3.35
2128 2939 3.891977 AGAAAAGGAAAAGAGTTCAGGGC 59.108 43.478 0.00 0.00 0.00 5.19
2130 2941 2.575805 AGGAAAAGAGTTCAGGGCTG 57.424 50.000 0.00 0.00 0.00 4.85
2141 2952 1.079543 CAGGGCTGAGAACTGGACG 60.080 63.158 0.00 0.00 0.00 4.79
2193 3004 0.324614 TGACCTGGATCGTGCACAAT 59.675 50.000 18.64 2.97 0.00 2.71
2194 3005 1.271325 TGACCTGGATCGTGCACAATT 60.271 47.619 18.64 0.00 0.00 2.32
2329 3140 0.304705 CACACCTGCGTTCACAAGAC 59.695 55.000 0.00 0.00 0.00 3.01
2330 3141 1.151777 ACACCTGCGTTCACAAGACG 61.152 55.000 0.00 0.00 0.00 4.18
2331 3142 1.594293 ACCTGCGTTCACAAGACGG 60.594 57.895 0.00 0.00 0.00 4.79
2426 3246 1.002250 CGAACCTGACGGTGAAGACG 61.002 60.000 0.00 0.00 44.73 4.18
2747 3594 1.139095 CTACTGGGGCTTCGACGAC 59.861 63.158 0.00 0.00 0.00 4.34
2767 3614 2.038557 ACTCTGCCTTGGACGTTAACAT 59.961 45.455 6.39 0.00 0.00 2.71
2795 3651 2.673833 GAGGACGTTGACAACTTCGAT 58.326 47.619 16.02 8.47 31.02 3.59
2836 3692 5.679734 TGAGATGTTTGCAAAGAGAGAAC 57.320 39.130 13.26 0.00 0.00 3.01
2867 3723 4.567971 AGAAACAGAGAAGATGAGCAGTG 58.432 43.478 0.00 0.00 0.00 3.66
2868 3724 3.331478 AACAGAGAAGATGAGCAGTGG 57.669 47.619 0.00 0.00 0.00 4.00
2869 3725 2.255406 ACAGAGAAGATGAGCAGTGGT 58.745 47.619 0.00 0.00 0.00 4.16
2873 3729 3.953612 AGAGAAGATGAGCAGTGGTAGAG 59.046 47.826 0.00 0.00 0.00 2.43
2900 3756 1.123861 AAGCAGCTGGAGGTGACTGA 61.124 55.000 17.12 0.00 45.66 3.41
2913 3769 0.482887 TGACTGACCACCCTCTGAGA 59.517 55.000 6.17 0.00 0.00 3.27
2954 3827 2.806745 CGCCAGTTCTTCCTCAGTTCAA 60.807 50.000 0.00 0.00 0.00 2.69
2986 3859 8.910351 AATTTAGGACATAAGATTAGTGCTCC 57.090 34.615 0.00 0.00 35.51 4.70
2987 3860 4.965200 AGGACATAAGATTAGTGCTCCC 57.035 45.455 0.00 0.00 26.86 4.30
2990 3863 3.648545 GACATAAGATTAGTGCTCCCCCT 59.351 47.826 0.00 0.00 0.00 4.79
3001 3874 4.364686 TCCCCCTCCTTCACCCCC 62.365 72.222 0.00 0.00 0.00 5.40
3084 4217 8.970691 ATGTCAAGGAAAATAAAAATCTGTCG 57.029 30.769 0.00 0.00 0.00 4.35
3182 4316 5.894298 ATTGGACATAGAATGCCACTCTA 57.106 39.130 0.00 0.00 36.60 2.43
3183 4317 5.894298 TTGGACATAGAATGCCACTCTAT 57.106 39.130 0.00 0.00 36.71 1.98
3184 4318 5.894298 TGGACATAGAATGCCACTCTATT 57.106 39.130 0.00 0.00 34.53 1.73
3186 4320 7.559335 TGGACATAGAATGCCACTCTATTAT 57.441 36.000 0.00 0.00 34.53 1.28
3188 4322 9.271921 TGGACATAGAATGCCACTCTATTATAT 57.728 33.333 0.00 0.00 34.53 0.86
3234 4370 7.635587 TCAGTTGTAACACGAAATAAAACGAAC 59.364 33.333 0.00 0.00 0.00 3.95
3235 4371 7.425882 CAGTTGTAACACGAAATAAAACGAACA 59.574 33.333 0.00 0.00 0.00 3.18
3255 4391 4.658071 ACACTTTTGTTACGCTTGTCTTG 58.342 39.130 0.00 0.00 28.43 3.02
3258 4394 2.748461 TTGTTACGCTTGTCTTGCAC 57.252 45.000 0.00 0.00 0.00 4.57
3265 4401 1.432514 GCTTGTCTTGCACGATCTCA 58.567 50.000 0.00 0.00 0.00 3.27
3270 4406 3.202097 TGTCTTGCACGATCTCACAAAA 58.798 40.909 0.00 0.00 0.00 2.44
3347 4496 2.062971 ATTCATGGAGGCATGGACAC 57.937 50.000 0.00 0.00 33.61 3.67
3348 4497 0.034186 TTCATGGAGGCATGGACACC 60.034 55.000 0.00 0.00 33.61 4.16
3445 4596 3.879295 CAGAGGAAAACTTGACTGAGCAA 59.121 43.478 0.00 0.00 0.00 3.91
3526 4679 2.359975 CCCGGTTCCTTGTCTGCC 60.360 66.667 0.00 0.00 0.00 4.85
3548 4701 6.603201 TGCCCTGAGAAAGTTCCATAAATAAG 59.397 38.462 0.00 0.00 0.00 1.73
3550 4703 7.773690 GCCCTGAGAAAGTTCCATAAATAAGTA 59.226 37.037 0.00 0.00 0.00 2.24
3709 4863 2.124403 GGCCCTGGAGCTGTCATG 60.124 66.667 0.00 0.00 0.00 3.07
3730 4884 4.178540 TGATCACGATTAGGAAACGGTTC 58.821 43.478 4.08 4.08 0.00 3.62
3797 4953 2.489971 TCACACTTGGGAGCTTTTACG 58.510 47.619 0.00 0.00 0.00 3.18
3809 4965 0.178301 CTTTTACGGCCTCTCCTCCC 59.822 60.000 0.00 0.00 0.00 4.30
3914 5076 5.455392 CGTCGGGTTAGTATAGTTATGTGG 58.545 45.833 0.00 0.00 0.00 4.17
3962 5124 2.317609 GCTTCACGCGCTCCTGAAA 61.318 57.895 5.73 0.00 0.00 2.69
3963 5125 1.841663 GCTTCACGCGCTCCTGAAAA 61.842 55.000 5.73 0.00 0.00 2.29
3964 5126 0.164647 CTTCACGCGCTCCTGAAAAG 59.835 55.000 5.73 0.00 0.00 2.27
3965 5127 0.531974 TTCACGCGCTCCTGAAAAGT 60.532 50.000 5.73 0.00 0.00 2.66
4039 5203 5.163992 TGACAAAGCTAGCGAATAAGAAACG 60.164 40.000 9.55 0.00 0.00 3.60
4041 5205 5.178809 ACAAAGCTAGCGAATAAGAAACGTT 59.821 36.000 9.55 0.00 0.00 3.99
4058 5222 4.408182 ACGTTCCCATCAGGATAAGAAG 57.592 45.455 0.00 0.00 46.94 2.85
4082 5246 4.368874 TCCACATCAGTGTTGTTGTTTG 57.631 40.909 4.03 0.00 44.39 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 2.193127 TGTCTTGTTCATACCGGGGAT 58.807 47.619 6.32 0.00 0.00 3.85
41 43 1.646912 TGTCTTGTTCATACCGGGGA 58.353 50.000 6.32 0.00 0.00 4.81
42 44 2.356135 CTTGTCTTGTTCATACCGGGG 58.644 52.381 6.32 0.00 0.00 5.73
62 64 1.714899 GCATATGTGACGTGGTGGCC 61.715 60.000 4.29 0.00 0.00 5.36
65 67 1.009078 CAGGCATATGTGACGTGGTG 58.991 55.000 4.29 0.00 38.86 4.17
76 78 0.816825 CACGCTCAAGGCAGGCATAT 60.817 55.000 0.00 0.00 41.91 1.78
77 79 1.450134 CACGCTCAAGGCAGGCATA 60.450 57.895 0.00 0.00 41.91 3.14
98 100 1.352083 GATAGGCTGATAGGCACCCA 58.648 55.000 0.00 0.00 44.19 4.51
103 105 3.822607 CCGTGATAGGCTGATAGGC 57.177 57.895 0.00 0.00 41.73 3.93
121 123 4.334443 CACATACATGCAAAGTAAGTCGC 58.666 43.478 6.48 0.00 0.00 5.19
125 127 3.696051 AGGCCACATACATGCAAAGTAAG 59.304 43.478 5.01 5.22 0.00 2.34
137 139 1.689273 CCACTCCTAGAGGCCACATAC 59.311 57.143 5.01 0.00 33.35 2.39
173 177 0.874175 ACGCGTACGCATGCATACAT 60.874 50.000 36.44 5.71 45.53 2.29
174 178 1.476235 GACGCGTACGCATGCATACA 61.476 55.000 36.44 0.00 45.53 2.29
175 179 1.198397 GACGCGTACGCATGCATAC 59.802 57.895 36.44 16.54 45.53 2.39
176 180 1.947146 GGACGCGTACGCATGCATA 60.947 57.895 36.44 3.22 45.53 3.14
180 184 2.585869 GGATGGACGCGTACGCATG 61.586 63.158 36.44 24.63 45.53 4.06
201 209 1.860950 CGGCTACATGCATGACTGTAC 59.139 52.381 32.75 15.33 45.15 2.90
202 210 1.806247 GCGGCTACATGCATGACTGTA 60.806 52.381 32.75 15.17 45.15 2.74
204 212 1.645455 GCGGCTACATGCATGACTG 59.355 57.895 32.75 23.85 45.15 3.51
205 213 1.524621 GGCGGCTACATGCATGACT 60.525 57.895 32.75 14.25 45.15 3.41
206 214 1.168407 ATGGCGGCTACATGCATGAC 61.168 55.000 32.75 19.78 45.15 3.06
209 217 1.900016 CCATGGCGGCTACATGCAT 60.900 57.895 11.43 0.00 43.29 3.96
210 218 2.516695 CCATGGCGGCTACATGCA 60.517 61.111 11.43 0.00 43.29 3.96
211 219 1.666209 AAACCATGGCGGCTACATGC 61.666 55.000 13.04 0.00 43.29 4.06
217 236 2.916703 TTGCAAACCATGGCGGCT 60.917 55.556 13.04 0.00 39.03 5.52
218 237 2.738139 GTTGCAAACCATGGCGGC 60.738 61.111 13.04 13.73 42.21 6.53
277 296 0.388520 GTTGTTGATGCCCGGCTTTC 60.389 55.000 11.61 8.38 0.00 2.62
376 402 6.968904 CCACGACATCATCAAAAGGAAATAAG 59.031 38.462 0.00 0.00 0.00 1.73
383 409 2.086869 AGCCACGACATCATCAAAAGG 58.913 47.619 0.00 0.00 0.00 3.11
385 411 3.856638 GCAAAGCCACGACATCATCAAAA 60.857 43.478 0.00 0.00 0.00 2.44
389 415 0.247814 CGCAAAGCCACGACATCATC 60.248 55.000 0.00 0.00 0.00 2.92
390 416 1.647545 CCGCAAAGCCACGACATCAT 61.648 55.000 0.00 0.00 0.00 2.45
391 417 2.324330 CCGCAAAGCCACGACATCA 61.324 57.895 0.00 0.00 0.00 3.07
431 527 3.067106 ACGGGCTATATTCATGCTTTCG 58.933 45.455 0.00 0.00 0.00 3.46
481 577 6.012508 TCCCATGGACTGTCTTTCTCTTAAAT 60.013 38.462 15.22 0.00 0.00 1.40
513 609 3.508762 CCATGCAACATTTTCTCTCTGC 58.491 45.455 0.00 0.00 0.00 4.26
549 645 1.607801 GCACTGCCCCAAGGATTTCC 61.608 60.000 0.00 0.00 33.47 3.13
572 668 5.494706 ACAGAGGAGTAATCCCCCAAATTTA 59.505 40.000 5.39 0.00 0.00 1.40
582 679 8.423906 TCTTATGGATAACAGAGGAGTAATCC 57.576 38.462 0.00 0.00 34.69 3.01
624 721 1.926426 AATCTTTCCTGGGGGAGGCG 61.926 60.000 0.00 0.00 43.29 5.52
643 740 9.519191 TTCAGAGAAATTTAATTCATGACTGGA 57.481 29.630 0.00 0.00 31.27 3.86
672 769 9.084533 GTAGAGTCAGGGATTTTCATAGATACT 57.915 37.037 0.00 0.00 0.00 2.12
673 770 9.084533 AGTAGAGTCAGGGATTTTCATAGATAC 57.915 37.037 0.00 0.00 0.00 2.24
674 771 9.083422 CAGTAGAGTCAGGGATTTTCATAGATA 57.917 37.037 0.00 0.00 0.00 1.98
693 790 5.499139 TTGGCTTTGTTTTCACAGTAGAG 57.501 39.130 0.00 0.00 33.22 2.43
694 791 5.163561 CCTTTGGCTTTGTTTTCACAGTAGA 60.164 40.000 0.00 0.00 33.22 2.59
695 792 5.043248 CCTTTGGCTTTGTTTTCACAGTAG 58.957 41.667 0.00 0.00 33.22 2.57
696 793 4.142049 CCCTTTGGCTTTGTTTTCACAGTA 60.142 41.667 0.00 0.00 33.22 2.74
697 794 3.369366 CCCTTTGGCTTTGTTTTCACAGT 60.369 43.478 0.00 0.00 33.22 3.55
730 829 4.687018 CAGCAGCAAAAATGTTGAATAGCA 59.313 37.500 0.00 0.00 31.22 3.49
732 831 5.119588 CCACAGCAGCAAAAATGTTGAATAG 59.880 40.000 0.00 0.00 33.59 1.73
737 836 2.285756 CACCACAGCAGCAAAAATGTTG 59.714 45.455 0.00 0.00 35.29 3.33
779 1096 7.578571 GCTTGGACAATGGACAATGGTTTATTA 60.579 37.037 0.00 0.00 0.00 0.98
786 1103 2.165030 GAGCTTGGACAATGGACAATGG 59.835 50.000 0.00 0.00 0.00 3.16
789 1106 1.425066 AGGAGCTTGGACAATGGACAA 59.575 47.619 0.00 0.00 0.00 3.18
790 1107 1.067295 AGGAGCTTGGACAATGGACA 58.933 50.000 0.00 0.00 0.00 4.02
791 1108 1.457346 CAGGAGCTTGGACAATGGAC 58.543 55.000 0.00 0.00 0.00 4.02
792 1109 0.322816 GCAGGAGCTTGGACAATGGA 60.323 55.000 0.00 0.00 37.91 3.41
793 1110 0.609957 TGCAGGAGCTTGGACAATGG 60.610 55.000 0.00 0.00 42.74 3.16
794 1111 0.809385 CTGCAGGAGCTTGGACAATG 59.191 55.000 5.57 0.00 42.74 2.82
795 1112 0.323178 CCTGCAGGAGCTTGGACAAT 60.323 55.000 29.88 0.00 42.74 2.71
796 1113 1.073722 CCTGCAGGAGCTTGGACAA 59.926 57.895 29.88 0.00 42.74 3.18
949 1292 2.319410 ATCGGGGAGAAGGGAGGAGG 62.319 65.000 0.00 0.00 0.00 4.30
962 1308 2.498167 GAAATGAGGATGTGATCGGGG 58.502 52.381 0.00 0.00 0.00 5.73
976 1322 1.816537 CGGAGGAGAGGCGAAATGA 59.183 57.895 0.00 0.00 0.00 2.57
982 1328 3.591835 GAGAGCGGAGGAGAGGCG 61.592 72.222 0.00 0.00 0.00 5.52
1015 1367 1.714899 GGGTGTGTGTGAGTGTGTGC 61.715 60.000 0.00 0.00 0.00 4.57
1023 1375 0.320374 GATCGGAAGGGTGTGTGTGA 59.680 55.000 0.00 0.00 0.00 3.58
1033 1385 1.747355 AGCAAATGCAAGATCGGAAGG 59.253 47.619 8.28 0.00 45.16 3.46
1045 1417 2.679837 TCCGATTTCTCAGAGCAAATGC 59.320 45.455 10.73 0.00 42.49 3.56
1064 1748 1.041437 CCGGTGTAGGATTCCTCTCC 58.959 60.000 8.94 9.24 34.61 3.71
1067 1751 1.067582 CGCCGGTGTAGGATTCCTC 59.932 63.158 8.94 1.97 34.61 3.71
1077 1761 1.668151 GCTTCTTTCTCGCCGGTGT 60.668 57.895 16.01 0.00 0.00 4.16
1094 1778 0.311790 CATCTCTCTCTGCTCGGAGC 59.688 60.000 22.78 22.78 42.82 4.70
1267 1951 0.947660 CTGATCATGCCGATGGACCG 60.948 60.000 0.00 0.00 33.17 4.79
1392 2076 2.555757 CCTCTTCTTGTTGGGCTTGAAG 59.444 50.000 0.00 0.00 36.44 3.02
1434 2118 5.640189 ATCCTGAAACAATTTCTCTGCAG 57.360 39.130 7.63 7.63 40.32 4.41
1496 2180 5.598005 TCCAAGAACAAACCAATCACTCAAT 59.402 36.000 0.00 0.00 0.00 2.57
1636 2350 3.157252 TGCTGGGCTCCGAGGATC 61.157 66.667 0.00 0.00 0.00 3.36
1657 2371 3.665675 ATGCGGCGAGACCAACCTC 62.666 63.158 12.98 0.00 39.03 3.85
1694 2409 6.260936 AGGTGCGGATTACTATTTGAAATGAG 59.739 38.462 0.00 0.00 0.00 2.90
1718 2436 1.596954 CGTTGCCACTTCGGAAAACAG 60.597 52.381 0.00 0.00 32.24 3.16
1757 2513 4.501400 GGGAACAGTGTTCCAAATCCAAAG 60.501 45.833 41.67 0.00 40.32 2.77
1808 2616 5.208294 TGAGTTCTAGGTACTCCCATTCT 57.792 43.478 17.72 0.00 41.02 2.40
1809 2617 5.836358 AGATGAGTTCTAGGTACTCCCATTC 59.164 44.000 17.72 11.74 41.02 2.67
1810 2618 5.782925 AGATGAGTTCTAGGTACTCCCATT 58.217 41.667 17.72 5.87 41.02 3.16
1811 2619 5.411103 AGATGAGTTCTAGGTACTCCCAT 57.589 43.478 17.72 9.94 41.02 4.00
1812 2620 4.883021 AGATGAGTTCTAGGTACTCCCA 57.117 45.455 17.72 6.62 41.02 4.37
1813 2621 6.657541 CATCTAGATGAGTTCTAGGTACTCCC 59.342 46.154 25.78 12.05 44.99 4.30
1814 2622 7.455058 TCATCTAGATGAGTTCTAGGTACTCC 58.545 42.308 27.93 8.04 44.99 3.85
1828 2636 7.285629 AGACCAAATTACGTCTCATCTAGATGA 59.714 37.037 29.17 29.17 42.99 2.92
1829 2637 7.429633 AGACCAAATTACGTCTCATCTAGATG 58.570 38.462 24.32 24.32 45.40 2.90
1830 2638 7.589958 AGACCAAATTACGTCTCATCTAGAT 57.410 36.000 0.00 0.00 34.15 1.98
1839 2647 6.536582 CAGATGAATGAGACCAAATTACGTCT 59.463 38.462 6.98 6.98 42.02 4.18
1840 2648 6.535150 TCAGATGAATGAGACCAAATTACGTC 59.465 38.462 0.00 0.00 0.00 4.34
1841 2649 6.406370 TCAGATGAATGAGACCAAATTACGT 58.594 36.000 0.00 0.00 0.00 3.57
1842 2650 6.908870 TCAGATGAATGAGACCAAATTACG 57.091 37.500 0.00 0.00 0.00 3.18
1843 2651 9.912634 TTTTTCAGATGAATGAGACCAAATTAC 57.087 29.630 0.00 0.00 33.54 1.89
1844 2652 9.912634 GTTTTTCAGATGAATGAGACCAAATTA 57.087 29.630 0.00 0.00 33.54 1.40
1845 2653 8.423349 TGTTTTTCAGATGAATGAGACCAAATT 58.577 29.630 0.00 0.00 33.54 1.82
1846 2654 7.954835 TGTTTTTCAGATGAATGAGACCAAAT 58.045 30.769 0.00 0.00 33.54 2.32
1847 2655 7.345422 TGTTTTTCAGATGAATGAGACCAAA 57.655 32.000 0.00 0.00 33.54 3.28
1848 2656 6.957920 TGTTTTTCAGATGAATGAGACCAA 57.042 33.333 0.00 0.00 33.54 3.67
1849 2657 6.772233 TCTTGTTTTTCAGATGAATGAGACCA 59.228 34.615 0.00 0.00 33.54 4.02
1850 2658 7.206981 TCTTGTTTTTCAGATGAATGAGACC 57.793 36.000 0.00 0.00 33.54 3.85
1851 2659 7.322222 CGTTCTTGTTTTTCAGATGAATGAGAC 59.678 37.037 0.00 0.00 33.54 3.36
1852 2660 7.355017 CGTTCTTGTTTTTCAGATGAATGAGA 58.645 34.615 0.00 0.00 33.54 3.27
1853 2661 6.580041 CCGTTCTTGTTTTTCAGATGAATGAG 59.420 38.462 0.00 0.00 33.54 2.90
1854 2662 6.262049 TCCGTTCTTGTTTTTCAGATGAATGA 59.738 34.615 0.00 0.00 33.54 2.57
1855 2663 6.437928 TCCGTTCTTGTTTTTCAGATGAATG 58.562 36.000 0.00 0.00 33.54 2.67
1856 2664 6.633500 TCCGTTCTTGTTTTTCAGATGAAT 57.367 33.333 0.00 0.00 33.54 2.57
1857 2665 6.633500 ATCCGTTCTTGTTTTTCAGATGAA 57.367 33.333 0.00 0.00 0.00 2.57
1858 2666 6.708502 TGTATCCGTTCTTGTTTTTCAGATGA 59.291 34.615 0.00 0.00 0.00 2.92
1859 2667 6.898041 TGTATCCGTTCTTGTTTTTCAGATG 58.102 36.000 0.00 0.00 0.00 2.90
1860 2668 7.360361 GTTGTATCCGTTCTTGTTTTTCAGAT 58.640 34.615 0.00 0.00 0.00 2.90
1861 2669 6.238538 GGTTGTATCCGTTCTTGTTTTTCAGA 60.239 38.462 0.00 0.00 0.00 3.27
1862 2670 5.912955 GGTTGTATCCGTTCTTGTTTTTCAG 59.087 40.000 0.00 0.00 0.00 3.02
1863 2671 5.221087 GGGTTGTATCCGTTCTTGTTTTTCA 60.221 40.000 0.00 0.00 0.00 2.69
1864 2672 5.217393 GGGTTGTATCCGTTCTTGTTTTTC 58.783 41.667 0.00 0.00 0.00 2.29
1865 2673 4.645588 TGGGTTGTATCCGTTCTTGTTTTT 59.354 37.500 0.00 0.00 0.00 1.94
1866 2674 4.037089 GTGGGTTGTATCCGTTCTTGTTTT 59.963 41.667 0.00 0.00 0.00 2.43
1867 2675 3.566742 GTGGGTTGTATCCGTTCTTGTTT 59.433 43.478 0.00 0.00 0.00 2.83
1868 2676 3.143728 GTGGGTTGTATCCGTTCTTGTT 58.856 45.455 0.00 0.00 0.00 2.83
1869 2677 2.774687 GTGGGTTGTATCCGTTCTTGT 58.225 47.619 0.00 0.00 0.00 3.16
1870 2678 1.730064 CGTGGGTTGTATCCGTTCTTG 59.270 52.381 0.00 0.00 0.00 3.02
1871 2679 1.345415 ACGTGGGTTGTATCCGTTCTT 59.655 47.619 0.00 0.00 0.00 2.52
1872 2680 0.971386 ACGTGGGTTGTATCCGTTCT 59.029 50.000 0.00 0.00 0.00 3.01
1873 2681 1.337074 TGACGTGGGTTGTATCCGTTC 60.337 52.381 0.00 0.00 0.00 3.95
1874 2682 0.680618 TGACGTGGGTTGTATCCGTT 59.319 50.000 0.00 0.00 0.00 4.44
1875 2683 0.245539 CTGACGTGGGTTGTATCCGT 59.754 55.000 0.00 0.00 0.00 4.69
1876 2684 1.082117 GCTGACGTGGGTTGTATCCG 61.082 60.000 0.00 0.00 0.00 4.18
1877 2685 0.036765 TGCTGACGTGGGTTGTATCC 60.037 55.000 0.00 0.00 0.00 2.59
1878 2686 1.076332 GTGCTGACGTGGGTTGTATC 58.924 55.000 0.00 0.00 0.00 2.24
1879 2687 0.394938 TGTGCTGACGTGGGTTGTAT 59.605 50.000 0.00 0.00 0.00 2.29
1880 2688 0.531090 GTGTGCTGACGTGGGTTGTA 60.531 55.000 0.00 0.00 0.00 2.41
1881 2689 1.817941 GTGTGCTGACGTGGGTTGT 60.818 57.895 0.00 0.00 0.00 3.32
1882 2690 1.817520 TGTGTGCTGACGTGGGTTG 60.818 57.895 0.00 0.00 0.00 3.77
1883 2691 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
1884 2692 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
1885 2693 3.337889 CGTGTGTGCTGACGTGGG 61.338 66.667 0.00 0.00 0.00 4.61
1886 2694 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
1887 2695 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
1888 2696 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
1889 2697 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
1890 2698 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
1891 2699 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
1892 2700 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
1893 2701 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
1894 2702 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
1895 2703 2.285220 GGTGCTATAAGATGCGTGTGTG 59.715 50.000 0.00 0.00 0.00 3.82
1896 2704 2.093711 TGGTGCTATAAGATGCGTGTGT 60.094 45.455 0.00 0.00 0.00 3.72
1897 2705 2.285220 GTGGTGCTATAAGATGCGTGTG 59.715 50.000 0.00 0.00 0.00 3.82
1898 2706 2.093711 TGTGGTGCTATAAGATGCGTGT 60.094 45.455 0.00 0.00 0.00 4.49
1899 2707 2.549926 TGTGGTGCTATAAGATGCGTG 58.450 47.619 0.00 0.00 0.00 5.34
1900 2708 2.979814 TGTGGTGCTATAAGATGCGT 57.020 45.000 0.00 0.00 0.00 5.24
1901 2709 2.738846 GGATGTGGTGCTATAAGATGCG 59.261 50.000 0.00 0.00 0.00 4.73
1902 2710 3.743521 TGGATGTGGTGCTATAAGATGC 58.256 45.455 0.00 0.00 0.00 3.91
1903 2711 5.182570 CCATTGGATGTGGTGCTATAAGATG 59.817 44.000 0.00 0.00 31.96 2.90
1904 2712 5.319453 CCATTGGATGTGGTGCTATAAGAT 58.681 41.667 0.00 0.00 31.96 2.40
1905 2713 4.717877 CCATTGGATGTGGTGCTATAAGA 58.282 43.478 0.00 0.00 31.96 2.10
1906 2714 3.254166 GCCATTGGATGTGGTGCTATAAG 59.746 47.826 6.95 0.00 39.01 1.73
1907 2715 3.117550 AGCCATTGGATGTGGTGCTATAA 60.118 43.478 6.95 0.00 39.01 0.98
1908 2716 2.442878 AGCCATTGGATGTGGTGCTATA 59.557 45.455 6.95 0.00 39.01 1.31
1909 2717 1.216175 AGCCATTGGATGTGGTGCTAT 59.784 47.619 6.95 0.00 39.01 2.97
1910 2718 0.625316 AGCCATTGGATGTGGTGCTA 59.375 50.000 6.95 0.00 39.01 3.49
1911 2719 0.625316 TAGCCATTGGATGTGGTGCT 59.375 50.000 6.95 0.00 39.01 4.40
1912 2720 1.696063 ATAGCCATTGGATGTGGTGC 58.304 50.000 6.95 0.00 39.01 5.01
1913 2721 5.221303 CCTTTTATAGCCATTGGATGTGGTG 60.221 44.000 6.95 0.00 39.01 4.17
1914 2722 4.895297 CCTTTTATAGCCATTGGATGTGGT 59.105 41.667 6.95 0.00 39.01 4.16
1915 2723 4.895297 ACCTTTTATAGCCATTGGATGTGG 59.105 41.667 6.95 0.00 39.80 4.17
1916 2724 5.593909 TCACCTTTTATAGCCATTGGATGTG 59.406 40.000 6.95 2.95 0.00 3.21
1917 2725 5.765510 TCACCTTTTATAGCCATTGGATGT 58.234 37.500 6.95 0.10 0.00 3.06
1918 2726 6.713762 TTCACCTTTTATAGCCATTGGATG 57.286 37.500 6.95 0.00 0.00 3.51
1919 2727 7.068702 TCATTCACCTTTTATAGCCATTGGAT 58.931 34.615 6.95 1.78 0.00 3.41
1920 2728 6.430864 TCATTCACCTTTTATAGCCATTGGA 58.569 36.000 6.95 0.00 0.00 3.53
1921 2729 6.547141 TCTCATTCACCTTTTATAGCCATTGG 59.453 38.462 0.00 0.00 0.00 3.16
1922 2730 7.572523 TCTCATTCACCTTTTATAGCCATTG 57.427 36.000 0.00 0.00 0.00 2.82
1923 2731 8.000709 TGATCTCATTCACCTTTTATAGCCATT 58.999 33.333 0.00 0.00 0.00 3.16
1924 2732 7.520798 TGATCTCATTCACCTTTTATAGCCAT 58.479 34.615 0.00 0.00 0.00 4.40
1925 2733 6.899089 TGATCTCATTCACCTTTTATAGCCA 58.101 36.000 0.00 0.00 0.00 4.75
1926 2734 7.807977 TTGATCTCATTCACCTTTTATAGCC 57.192 36.000 0.00 0.00 0.00 3.93
1927 2735 9.282569 AGATTGATCTCATTCACCTTTTATAGC 57.717 33.333 0.00 0.00 29.30 2.97
1930 2738 9.282569 GCTAGATTGATCTCATTCACCTTTTAT 57.717 33.333 0.00 0.00 38.32 1.40
1931 2739 8.267183 TGCTAGATTGATCTCATTCACCTTTTA 58.733 33.333 0.00 0.00 38.32 1.52
1932 2740 7.114754 TGCTAGATTGATCTCATTCACCTTTT 58.885 34.615 0.00 0.00 38.32 2.27
1933 2741 6.656902 TGCTAGATTGATCTCATTCACCTTT 58.343 36.000 0.00 0.00 38.32 3.11
1934 2742 6.244552 TGCTAGATTGATCTCATTCACCTT 57.755 37.500 0.00 0.00 38.32 3.50
1935 2743 5.883685 TGCTAGATTGATCTCATTCACCT 57.116 39.130 0.00 0.00 38.32 4.00
1936 2744 6.932356 TTTGCTAGATTGATCTCATTCACC 57.068 37.500 0.00 0.00 38.32 4.02
1937 2745 7.909121 CAGTTTTGCTAGATTGATCTCATTCAC 59.091 37.037 0.00 0.00 38.32 3.18
1938 2746 7.825761 TCAGTTTTGCTAGATTGATCTCATTCA 59.174 33.333 0.00 0.00 38.32 2.57
1939 2747 8.206325 TCAGTTTTGCTAGATTGATCTCATTC 57.794 34.615 0.00 0.00 38.32 2.67
1940 2748 8.749026 ATCAGTTTTGCTAGATTGATCTCATT 57.251 30.769 0.00 0.00 38.32 2.57
1941 2749 9.491675 CTATCAGTTTTGCTAGATTGATCTCAT 57.508 33.333 0.00 0.00 38.32 2.90
1942 2750 7.930325 CCTATCAGTTTTGCTAGATTGATCTCA 59.070 37.037 0.00 0.00 38.32 3.27
1943 2751 8.147058 TCCTATCAGTTTTGCTAGATTGATCTC 58.853 37.037 0.00 0.00 38.32 2.75
1944 2752 8.027524 TCCTATCAGTTTTGCTAGATTGATCT 57.972 34.615 0.00 0.00 40.86 2.75
1945 2753 8.668510 TTCCTATCAGTTTTGCTAGATTGATC 57.331 34.615 0.00 0.00 0.00 2.92
1947 2755 9.770097 CTATTCCTATCAGTTTTGCTAGATTGA 57.230 33.333 0.00 0.00 0.00 2.57
1948 2756 8.997323 CCTATTCCTATCAGTTTTGCTAGATTG 58.003 37.037 0.00 0.00 0.00 2.67
1949 2757 8.160106 CCCTATTCCTATCAGTTTTGCTAGATT 58.840 37.037 0.00 0.00 0.00 2.40
1950 2758 7.293535 ACCCTATTCCTATCAGTTTTGCTAGAT 59.706 37.037 0.00 0.00 0.00 1.98
1951 2759 6.615726 ACCCTATTCCTATCAGTTTTGCTAGA 59.384 38.462 0.00 0.00 0.00 2.43
1952 2760 6.831976 ACCCTATTCCTATCAGTTTTGCTAG 58.168 40.000 0.00 0.00 0.00 3.42
1953 2761 6.824958 ACCCTATTCCTATCAGTTTTGCTA 57.175 37.500 0.00 0.00 0.00 3.49
1954 2762 5.717119 ACCCTATTCCTATCAGTTTTGCT 57.283 39.130 0.00 0.00 0.00 3.91
1955 2763 5.470437 GCTACCCTATTCCTATCAGTTTTGC 59.530 44.000 0.00 0.00 0.00 3.68
1956 2764 5.696724 CGCTACCCTATTCCTATCAGTTTTG 59.303 44.000 0.00 0.00 0.00 2.44
1957 2765 5.601313 TCGCTACCCTATTCCTATCAGTTTT 59.399 40.000 0.00 0.00 0.00 2.43
1958 2766 5.145564 TCGCTACCCTATTCCTATCAGTTT 58.854 41.667 0.00 0.00 0.00 2.66
1959 2767 4.737578 TCGCTACCCTATTCCTATCAGTT 58.262 43.478 0.00 0.00 0.00 3.16
1960 2768 4.337145 CTCGCTACCCTATTCCTATCAGT 58.663 47.826 0.00 0.00 0.00 3.41
1961 2769 3.129638 GCTCGCTACCCTATTCCTATCAG 59.870 52.174 0.00 0.00 0.00 2.90
1962 2770 3.090037 GCTCGCTACCCTATTCCTATCA 58.910 50.000 0.00 0.00 0.00 2.15
1963 2771 2.097791 CGCTCGCTACCCTATTCCTATC 59.902 54.545 0.00 0.00 0.00 2.08
1964 2772 2.093106 CGCTCGCTACCCTATTCCTAT 58.907 52.381 0.00 0.00 0.00 2.57
1965 2773 1.531423 CGCTCGCTACCCTATTCCTA 58.469 55.000 0.00 0.00 0.00 2.94
1966 2774 1.807495 GCGCTCGCTACCCTATTCCT 61.807 60.000 0.00 0.00 38.26 3.36
1988 2796 0.463116 AACATATCCAACCGGACGCC 60.463 55.000 9.46 0.00 46.79 5.68
2023 2831 1.869754 CGCCATCACTCGTCCAATAGG 60.870 57.143 0.00 0.00 0.00 2.57
2024 2832 1.202417 ACGCCATCACTCGTCCAATAG 60.202 52.381 0.00 0.00 33.09 1.73
2033 2841 3.377346 ACTATCATCACGCCATCACTC 57.623 47.619 0.00 0.00 0.00 3.51
2034 2842 3.891977 AGTACTATCATCACGCCATCACT 59.108 43.478 0.00 0.00 0.00 3.41
2041 2852 2.347661 GCGCAAAGTACTATCATCACGC 60.348 50.000 0.30 1.77 35.57 5.34
2042 2853 3.116300 AGCGCAAAGTACTATCATCACG 58.884 45.455 11.47 0.00 0.00 4.35
2044 2855 5.515797 ACTAGCGCAAAGTACTATCATCA 57.484 39.130 11.47 0.00 0.00 3.07
2045 2856 6.670233 ACTACTAGCGCAAAGTACTATCATC 58.330 40.000 11.47 0.00 0.00 2.92
2046 2857 6.636562 ACTACTAGCGCAAAGTACTATCAT 57.363 37.500 11.47 0.00 0.00 2.45
2051 2862 7.601508 ACAAAATTACTACTAGCGCAAAGTACT 59.398 33.333 11.47 8.52 0.00 2.73
2052 2863 7.736447 ACAAAATTACTACTAGCGCAAAGTAC 58.264 34.615 11.47 0.00 0.00 2.73
2054 2865 6.796705 ACAAAATTACTACTAGCGCAAAGT 57.203 33.333 17.91 17.91 0.00 2.66
2063 2874 8.372459 TCTGAAGCCAGAACAAAATTACTACTA 58.628 33.333 0.00 0.00 45.74 1.82
2107 2918 3.891977 AGCCCTGAACTCTTTTCCTTTTC 59.108 43.478 0.00 0.00 0.00 2.29
2118 2929 1.338579 CCAGTTCTCAGCCCTGAACTC 60.339 57.143 11.33 0.00 46.70 3.01
2128 2939 4.268687 GGCACGTCCAGTTCTCAG 57.731 61.111 0.00 0.00 34.01 3.35
2141 2952 1.805428 AAAGAACACCATGGCGGCAC 61.805 55.000 16.34 0.00 39.03 5.01
2173 2984 0.107643 TTGTGCACGATCCAGGTCAA 59.892 50.000 13.13 0.00 0.00 3.18
2193 3004 1.003812 ACGGTAGTATGCCCTGCAAAA 59.996 47.619 0.00 0.00 43.62 2.44
2194 3005 0.616371 ACGGTAGTATGCCCTGCAAA 59.384 50.000 0.00 0.00 43.62 3.68
2521 3347 3.537206 GAGAACGGGTGGTGCTGCT 62.537 63.158 0.00 0.00 33.33 4.24
2522 3348 3.050275 GAGAACGGGTGGTGCTGC 61.050 66.667 0.00 0.00 33.33 5.25
2523 3349 2.358737 GGAGAACGGGTGGTGCTG 60.359 66.667 0.00 0.00 33.33 4.41
2524 3350 2.847234 TGGAGAACGGGTGGTGCT 60.847 61.111 0.00 0.00 37.17 4.40
2525 3351 2.668550 GTGGAGAACGGGTGGTGC 60.669 66.667 0.00 0.00 0.00 5.01
2747 3594 2.163818 TGTTAACGTCCAAGGCAGAG 57.836 50.000 0.26 0.00 0.00 3.35
2783 3639 4.832248 AGGCAGAAATATCGAAGTTGTCA 58.168 39.130 0.00 0.00 0.00 3.58
2784 3640 5.582665 AGAAGGCAGAAATATCGAAGTTGTC 59.417 40.000 0.00 0.00 0.00 3.18
2795 3651 3.872696 TCATGCGAAGAAGGCAGAAATA 58.127 40.909 0.00 0.00 44.71 1.40
2836 3692 4.908736 TCTTCTCTGTTTCTTTGTTTGCG 58.091 39.130 0.00 0.00 0.00 4.85
2867 3723 4.261994 CCAGCTGCTTCTCTAATCTCTACC 60.262 50.000 8.66 0.00 0.00 3.18
2868 3724 4.582656 TCCAGCTGCTTCTCTAATCTCTAC 59.417 45.833 8.66 0.00 0.00 2.59
2869 3725 4.797743 TCCAGCTGCTTCTCTAATCTCTA 58.202 43.478 8.66 0.00 0.00 2.43
2873 3729 2.433970 ACCTCCAGCTGCTTCTCTAATC 59.566 50.000 8.66 0.00 0.00 1.75
2900 3756 0.780637 TCTGTCTCTCAGAGGGTGGT 59.219 55.000 0.57 0.00 46.77 4.16
2913 3769 2.252714 GTGTTCTTCCCTCCTCTGTCT 58.747 52.381 0.00 0.00 0.00 3.41
2980 3853 2.671682 GTGAAGGAGGGGGAGCAC 59.328 66.667 0.00 0.00 0.00 4.40
2984 3857 4.364686 GGGGGTGAAGGAGGGGGA 62.365 72.222 0.00 0.00 0.00 4.81
2985 3858 3.990141 ATGGGGGTGAAGGAGGGGG 62.990 68.421 0.00 0.00 0.00 5.40
2986 3859 1.935931 AATGGGGGTGAAGGAGGGG 60.936 63.158 0.00 0.00 0.00 4.79
2987 3860 0.921256 AGAATGGGGGTGAAGGAGGG 60.921 60.000 0.00 0.00 0.00 4.30
2990 3863 3.628832 AAAAAGAATGGGGGTGAAGGA 57.371 42.857 0.00 0.00 0.00 3.36
3084 4217 1.512926 ACGAGATGCAGAACACCAAC 58.487 50.000 0.00 0.00 0.00 3.77
3154 4288 6.271857 AGTGGCATTCTATGTCCAATATCTCT 59.728 38.462 0.00 0.00 37.89 3.10
3195 4329 8.767085 CGTGTTACAACTGATTACTCCTTTTTA 58.233 33.333 0.00 0.00 0.00 1.52
3212 4348 7.462731 AGTGTTCGTTTTATTTCGTGTTACAA 58.537 30.769 0.00 0.00 0.00 2.41
3216 4352 7.326547 ACAAAAGTGTTCGTTTTATTTCGTGTT 59.673 29.630 0.00 0.00 32.58 3.32
3234 4370 3.482110 GCAAGACAAGCGTAACAAAAGTG 59.518 43.478 0.00 0.00 0.00 3.16
3235 4371 3.127895 TGCAAGACAAGCGTAACAAAAGT 59.872 39.130 0.00 0.00 33.85 2.66
3270 4406 4.933400 GTGATCATTCATTTTGCTGGCTTT 59.067 37.500 0.00 0.00 33.56 3.51
3287 4423 9.696572 ACAGTAGTAATTAGTAAGAGGTGATCA 57.303 33.333 1.48 0.00 0.00 2.92
3288 4424 9.953697 CACAGTAGTAATTAGTAAGAGGTGATC 57.046 37.037 1.48 0.00 0.00 2.92
3357 4506 3.490761 GGGGGCACGTATGAATTTTCATG 60.491 47.826 14.54 3.25 46.68 3.07
3445 4596 6.925718 GCTTTACTCCATTCAAAGAAAGCTTT 59.074 34.615 12.53 12.53 44.93 3.51
3703 4857 4.803613 CGTTTCCTAATCGTGATCATGACA 59.196 41.667 19.76 9.89 0.00 3.58
3707 4861 4.402056 ACCGTTTCCTAATCGTGATCAT 57.598 40.909 0.00 0.00 0.00 2.45
3709 4863 4.773742 GAACCGTTTCCTAATCGTGATC 57.226 45.455 0.00 0.00 0.00 2.92
3797 4953 1.463018 ATGATGGGGAGGAGAGGCC 60.463 63.158 0.00 0.00 0.00 5.19
3809 4965 4.441079 GGCAAATTGGAAGACTGATGATGG 60.441 45.833 0.00 0.00 0.00 3.51
3986 5149 7.496747 AGAGCTACATCTGATTTTCCTACTTC 58.503 38.462 0.00 0.00 0.00 3.01
4082 5246 7.284919 TGGTCCAAAGGAGAAAATTAAGTTC 57.715 36.000 0.00 0.00 29.39 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.