Multiple sequence alignment - TraesCS5A01G185300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G185300 chr5A 100.000 5272 0 0 1 5272 385399734 385394463 0.000000e+00 9736.0
1 TraesCS5A01G185300 chr5A 91.781 73 1 2 2246 2313 211618003 211618075 4.350000e-16 97.1
2 TraesCS5A01G185300 chr5A 76.966 178 27 8 4888 5055 295588245 295588072 7.270000e-14 89.8
3 TraesCS5A01G185300 chr5D 89.626 2246 100 58 1 2177 292699933 292697752 0.000000e+00 2734.0
4 TraesCS5A01G185300 chr5D 83.522 1414 151 37 2313 3693 292697713 292696349 0.000000e+00 1245.0
5 TraesCS5A01G185300 chr5D 93.058 533 33 2 3865 4393 292695873 292695341 0.000000e+00 776.0
6 TraesCS5A01G185300 chr5D 79.404 369 54 15 4851 5219 292694444 292694098 1.900000e-59 241.0
7 TraesCS5A01G185300 chr5D 78.571 182 25 6 4888 5059 553632304 553632127 2.010000e-19 108.0
8 TraesCS5A01G185300 chr5B 92.189 1946 97 24 1 1912 333257762 333255838 0.000000e+00 2700.0
9 TraesCS5A01G185300 chr5B 82.624 1410 159 43 2313 3684 333254520 333253159 0.000000e+00 1168.0
10 TraesCS5A01G185300 chr5B 89.282 905 68 12 4390 5272 333251885 333250988 0.000000e+00 1107.0
11 TraesCS5A01G185300 chr5B 93.254 504 32 1 3888 4389 333252636 333252133 0.000000e+00 741.0
12 TraesCS5A01G185300 chr5B 86.103 331 24 13 1912 2241 333254835 333254526 2.350000e-88 337.0
13 TraesCS5A01G185300 chr2A 82.305 616 89 17 1275 1878 611310539 611311146 2.810000e-142 516.0
14 TraesCS5A01G185300 chr2A 82.991 341 51 6 3937 4272 611311174 611311512 8.580000e-78 302.0
15 TraesCS5A01G185300 chr2D 82.201 618 86 20 1275 1878 470000146 470000753 1.310000e-140 510.0
16 TraesCS5A01G185300 chr2D 83.284 341 50 6 3937 4272 470000781 470001119 1.840000e-79 307.0
17 TraesCS5A01G185300 chr2B 81.199 617 94 16 1275 1878 548650866 548651473 1.330000e-130 477.0
18 TraesCS5A01G185300 chr2B 83.235 340 52 4 3937 4272 548651501 548651839 1.840000e-79 307.0
19 TraesCS5A01G185300 chr1B 78.916 166 31 3 4888 5053 105201291 105201130 5.580000e-20 110.0
20 TraesCS5A01G185300 chr7A 89.873 79 5 3 2238 2313 68881180 68881102 1.210000e-16 99.0
21 TraesCS5A01G185300 chr4D 88.235 85 4 5 2238 2316 15786278 15786194 4.350000e-16 97.1
22 TraesCS5A01G185300 chr3D 90.667 75 4 2 2242 2313 20751708 20751782 4.350000e-16 97.1
23 TraesCS5A01G185300 chr3D 77.654 179 26 8 4888 5056 529873862 529873688 4.350000e-16 97.1
24 TraesCS5A01G185300 chr7D 90.411 73 5 2 2242 2313 249080595 249080524 1.560000e-15 95.3
25 TraesCS5A01G185300 chr3A 88.750 80 5 3 2238 2313 440634959 440635038 1.560000e-15 95.3
26 TraesCS5A01G185300 chr1D 86.667 90 7 1 2234 2318 176742414 176742325 1.560000e-15 95.3
27 TraesCS5A01G185300 chr6A 91.429 70 2 3 2251 2317 501479355 501479287 5.620000e-15 93.5
28 TraesCS5A01G185300 chr4A 90.411 73 4 2 2244 2313 621127582 621127654 5.620000e-15 93.5
29 TraesCS5A01G185300 chr7B 97.059 34 1 0 3762 3795 84564714 84564747 2.050000e-04 58.4
30 TraesCS5A01G185300 chr1A 92.500 40 0 3 3813 3850 518984698 518984660 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G185300 chr5A 385394463 385399734 5271 True 9736.0 9736 100.0000 1 5272 1 chr5A.!!$R2 5271
1 TraesCS5A01G185300 chr5D 292694098 292699933 5835 True 1249.0 2734 86.4025 1 5219 4 chr5D.!!$R2 5218
2 TraesCS5A01G185300 chr5B 333250988 333257762 6774 True 1210.6 2700 88.6904 1 5272 5 chr5B.!!$R1 5271
3 TraesCS5A01G185300 chr2A 611310539 611311512 973 False 409.0 516 82.6480 1275 4272 2 chr2A.!!$F1 2997
4 TraesCS5A01G185300 chr2D 470000146 470001119 973 False 408.5 510 82.7425 1275 4272 2 chr2D.!!$F1 2997
5 TraesCS5A01G185300 chr2B 548650866 548651839 973 False 392.0 477 82.2170 1275 4272 2 chr2B.!!$F1 2997

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 132 0.034896 ATTCGACGGTTGCCTCACTT 59.965 50.0 0.0 0.00 0.00 3.16 F
1020 1063 0.108585 TGGAAGCCACCTCAGAACAC 59.891 55.0 0.0 0.00 0.00 3.32 F
2017 3163 0.107456 AGCCAGCGATCGGATCAAAT 59.893 50.0 18.3 0.28 0.00 2.32 F
3059 4231 0.034477 AATACCTCCTTGGCAACCCG 60.034 55.0 0.0 0.00 40.22 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1609 1723 0.809385 TGACGCAAACAAAAACCCGA 59.191 45.0 0.00 0.0 0.0 5.14 R
2299 3446 0.389757 GCAAGATACTCCCTCCGTCC 59.610 60.0 0.00 0.0 0.0 4.79 R
3907 5429 0.038343 CCTGCAAACATCCCAAACCG 60.038 55.0 0.00 0.0 0.0 4.44 R
4778 6582 0.188342 AGTGTTTGTGAAGGGGCCAT 59.812 50.0 4.39 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.718753 CCTGCTAAATCCTGAGTAGATTGAAAT 59.281 37.037 0.00 0.00 34.23 2.17
42 48 2.157738 GAAATGAGCAGAAGTGTGGCT 58.842 47.619 0.00 0.00 41.35 4.75
48 54 3.452264 TGAGCAGAAGTGTGGCTATATGT 59.548 43.478 0.00 0.00 38.15 2.29
52 60 5.363868 AGCAGAAGTGTGGCTATATGTCTAA 59.636 40.000 0.00 0.00 35.82 2.10
55 63 5.661312 AGAAGTGTGGCTATATGTCTAACCA 59.339 40.000 0.00 0.00 0.00 3.67
65 73 1.080025 GTCTAACCAGACGCGGCTT 60.080 57.895 14.60 0.00 41.79 4.35
67 75 1.374252 CTAACCAGACGCGGCTTGT 60.374 57.895 14.60 14.17 0.00 3.16
107 115 3.262405 TCCCTCGGTGCTAGTTTTACATT 59.738 43.478 0.00 0.00 0.00 2.71
109 117 3.306166 CCTCGGTGCTAGTTTTACATTCG 59.694 47.826 0.00 0.00 0.00 3.34
116 124 4.150980 TGCTAGTTTTACATTCGACGGTTG 59.849 41.667 0.00 0.00 0.00 3.77
117 125 3.531262 AGTTTTACATTCGACGGTTGC 57.469 42.857 0.00 0.00 0.00 4.17
119 127 2.172851 TTTACATTCGACGGTTGCCT 57.827 45.000 0.00 0.00 0.00 4.75
120 128 1.717194 TTACATTCGACGGTTGCCTC 58.283 50.000 0.00 0.00 0.00 4.70
121 129 0.604073 TACATTCGACGGTTGCCTCA 59.396 50.000 0.00 0.00 0.00 3.86
122 130 0.949105 ACATTCGACGGTTGCCTCAC 60.949 55.000 0.00 0.00 0.00 3.51
123 131 0.670546 CATTCGACGGTTGCCTCACT 60.671 55.000 0.00 0.00 0.00 3.41
124 132 0.034896 ATTCGACGGTTGCCTCACTT 59.965 50.000 0.00 0.00 0.00 3.16
181 201 1.286880 GAGCATGCAAGCCGTGTTT 59.713 52.632 21.98 0.00 34.23 2.83
206 226 2.326529 TATCCATCCCCGGAGCCACT 62.327 60.000 0.73 0.00 38.83 4.00
239 259 4.334759 CACCTGCAAAATCCAGAGTAGATG 59.665 45.833 0.00 0.00 32.03 2.90
240 260 3.881688 CCTGCAAAATCCAGAGTAGATGG 59.118 47.826 0.00 0.00 39.33 3.51
341 362 5.865977 ATCCCCCAATTAAGCTATGATGA 57.134 39.130 0.00 0.00 0.00 2.92
342 363 5.865977 TCCCCCAATTAAGCTATGATGAT 57.134 39.130 0.00 0.00 0.00 2.45
343 364 5.573219 TCCCCCAATTAAGCTATGATGATG 58.427 41.667 0.00 0.00 0.00 3.07
384 405 4.819769 TCTGATTTTGTATTTGCCAAGGC 58.180 39.130 3.61 3.61 42.35 4.35
572 595 2.616376 CCGTGTCATGTCAAAAACAGGA 59.384 45.455 0.00 0.00 45.86 3.86
692 717 1.304962 TCCACCGCAGAGCCTCTTA 60.305 57.895 0.00 0.00 0.00 2.10
722 749 1.021968 GAAGCCAACAAACCAGTCGT 58.978 50.000 0.00 0.00 0.00 4.34
724 751 1.021968 AGCCAACAAACCAGTCGTTC 58.978 50.000 0.00 0.00 31.78 3.95
773 805 6.978659 TGTTTAATCCTCGATGCACTTAGTAG 59.021 38.462 0.00 0.00 0.00 2.57
774 806 6.710597 TTAATCCTCGATGCACTTAGTAGT 57.289 37.500 0.00 0.00 34.00 2.73
775 807 7.812690 TTAATCCTCGATGCACTTAGTAGTA 57.187 36.000 0.00 0.00 31.96 1.82
785 817 7.839837 CGATGCACTTAGTAGTATTTTTCGTTC 59.160 37.037 0.00 0.00 31.96 3.95
873 905 2.047655 TTGTCGACCATGACGGCC 60.048 61.111 14.12 0.00 41.87 6.13
934 966 5.916661 AAAGTACGAGAGGCAATCTTCTA 57.083 39.130 0.00 0.00 38.84 2.10
942 974 5.010112 CGAGAGGCAATCTTCTAGTTATCCA 59.990 44.000 0.00 0.00 38.84 3.41
944 976 6.825610 AGAGGCAATCTTCTAGTTATCCAAG 58.174 40.000 0.00 0.00 32.99 3.61
945 977 6.385467 AGAGGCAATCTTCTAGTTATCCAAGT 59.615 38.462 0.00 0.00 32.99 3.16
948 980 7.337942 AGGCAATCTTCTAGTTATCCAAGTTTG 59.662 37.037 0.00 0.00 32.36 2.93
950 982 7.362056 GCAATCTTCTAGTTATCCAAGTTTGCA 60.362 37.037 19.99 0.00 44.10 4.08
954 994 9.077885 TCTTCTAGTTATCCAAGTTTGCATTTT 57.922 29.630 0.00 0.00 0.00 1.82
956 996 7.826690 TCTAGTTATCCAAGTTTGCATTTTCC 58.173 34.615 0.00 0.00 0.00 3.13
958 998 6.825610 AGTTATCCAAGTTTGCATTTTCCAA 58.174 32.000 0.00 0.00 0.00 3.53
959 999 6.705825 AGTTATCCAAGTTTGCATTTTCCAAC 59.294 34.615 0.00 0.00 0.00 3.77
968 1008 1.269448 GCATTTTCCAACGAGAGGCAA 59.731 47.619 0.00 0.00 0.00 4.52
973 1013 3.478857 TTCCAACGAGAGGCAAAGTTA 57.521 42.857 0.00 0.00 0.00 2.24
982 1025 5.235831 ACGAGAGGCAAAGTTAAACTGTAAC 59.764 40.000 0.00 0.00 0.00 2.50
994 1037 8.672823 AGTTAAACTGTAACTTTGTAAGGGAG 57.327 34.615 0.00 0.00 34.40 4.30
1020 1063 0.108585 TGGAAGCCACCTCAGAACAC 59.891 55.000 0.00 0.00 0.00 3.32
1026 1069 1.372997 CACCTCAGAACACGACGGG 60.373 63.158 0.00 0.00 0.00 5.28
1068 1111 1.449070 CGAAGCTCTCATGGCAGCA 60.449 57.895 16.33 0.00 38.18 4.41
1207 1250 0.530870 GCAGAAGACCATAGACGGCC 60.531 60.000 0.00 0.00 0.00 6.13
1256 1299 3.431725 GAAAGGTGCGGGCGAAGG 61.432 66.667 0.00 0.00 0.00 3.46
1542 1585 2.338015 GCTGGTGAGCCCACACATG 61.338 63.158 0.00 0.00 44.93 3.21
1591 1705 2.965520 TACAGCATGCCGGCCTTGA 61.966 57.895 26.77 4.98 42.53 3.02
1609 1723 5.738909 CCTTGAGAAGTGACTATCCATGTT 58.261 41.667 0.00 0.00 0.00 2.71
1610 1724 5.814705 CCTTGAGAAGTGACTATCCATGTTC 59.185 44.000 0.00 0.00 0.00 3.18
1614 1728 2.467880 AGTGACTATCCATGTTCGGGT 58.532 47.619 0.00 0.00 0.00 5.28
1624 1738 2.286563 CCATGTTCGGGTTTTTGTTTGC 59.713 45.455 0.00 0.00 0.00 3.68
1625 1739 1.630148 TGTTCGGGTTTTTGTTTGCG 58.370 45.000 0.00 0.00 0.00 4.85
1768 1882 1.972660 GAGTTCCCGGAGATGGTGGG 61.973 65.000 0.73 0.00 44.75 4.61
1899 2013 3.129638 GTCTGAAGCAGAGACGAGGTAAT 59.870 47.826 0.00 0.00 41.46 1.89
1933 3079 5.656859 AGCCTTTGTTTTTCCTCTGTTTACT 59.343 36.000 0.00 0.00 0.00 2.24
1944 3090 9.675464 TTTTCCTCTGTTTACTAGTTTCAGAAA 57.325 29.630 18.14 11.73 35.26 2.52
1979 3125 6.149308 GCTCGATGAAGATCTTCTCATCTCTA 59.851 42.308 30.45 15.91 40.14 2.43
2001 3147 7.665690 TCTATACAGAATCTTGAATCTCAGCC 58.334 38.462 0.00 0.00 0.00 4.85
2004 3150 3.312973 CAGAATCTTGAATCTCAGCCAGC 59.687 47.826 0.00 0.00 0.00 4.85
2009 3155 0.249197 TGAATCTCAGCCAGCGATCG 60.249 55.000 11.69 11.69 0.00 3.69
2010 3156 0.943359 GAATCTCAGCCAGCGATCGG 60.943 60.000 18.30 0.83 0.00 4.18
2013 3159 1.372748 CTCAGCCAGCGATCGGATC 60.373 63.158 18.30 7.95 0.00 3.36
2014 3160 2.080222 CTCAGCCAGCGATCGGATCA 62.080 60.000 18.30 0.00 0.00 2.92
2015 3161 1.227350 CAGCCAGCGATCGGATCAA 60.227 57.895 18.30 0.00 0.00 2.57
2017 3163 0.107456 AGCCAGCGATCGGATCAAAT 59.893 50.000 18.30 0.28 0.00 2.32
2018 3164 1.344438 AGCCAGCGATCGGATCAAATA 59.656 47.619 18.30 0.00 0.00 1.40
2019 3165 1.728971 GCCAGCGATCGGATCAAATAG 59.271 52.381 18.30 2.55 0.00 1.73
2020 3166 2.868044 GCCAGCGATCGGATCAAATAGT 60.868 50.000 18.30 0.00 0.00 2.12
2021 3167 3.393800 CCAGCGATCGGATCAAATAGTT 58.606 45.455 18.30 0.00 0.00 2.24
2022 3168 3.809832 CCAGCGATCGGATCAAATAGTTT 59.190 43.478 18.30 0.00 0.00 2.66
2023 3169 4.988540 CCAGCGATCGGATCAAATAGTTTA 59.011 41.667 18.30 0.00 0.00 2.01
2024 3170 5.107453 CCAGCGATCGGATCAAATAGTTTAC 60.107 44.000 18.30 0.00 0.00 2.01
2025 3171 5.462068 CAGCGATCGGATCAAATAGTTTACA 59.538 40.000 18.30 0.00 0.00 2.41
2026 3172 5.692204 AGCGATCGGATCAAATAGTTTACAG 59.308 40.000 18.30 0.00 0.00 2.74
2027 3173 5.462398 GCGATCGGATCAAATAGTTTACAGT 59.538 40.000 18.30 0.00 0.00 3.55
2028 3174 6.018994 GCGATCGGATCAAATAGTTTACAGTT 60.019 38.462 18.30 0.00 0.00 3.16
2029 3175 7.168637 GCGATCGGATCAAATAGTTTACAGTTA 59.831 37.037 18.30 0.00 0.00 2.24
2030 3176 8.477709 CGATCGGATCAAATAGTTTACAGTTAC 58.522 37.037 17.53 0.00 0.00 2.50
2031 3177 9.530633 GATCGGATCAAATAGTTTACAGTTACT 57.469 33.333 13.02 0.00 0.00 2.24
2090 3236 8.779354 AGCAACACCTTTTAATTTACAAAACA 57.221 26.923 0.00 0.00 0.00 2.83
2091 3237 9.220767 AGCAACACCTTTTAATTTACAAAACAA 57.779 25.926 0.00 0.00 0.00 2.83
2092 3238 9.827411 GCAACACCTTTTAATTTACAAAACAAA 57.173 25.926 0.00 0.00 0.00 2.83
2260 3407 4.376225 AAAAACTATTTCCTCCGTCCCA 57.624 40.909 0.00 0.00 0.00 4.37
2261 3408 4.586306 AAAACTATTTCCTCCGTCCCAT 57.414 40.909 0.00 0.00 0.00 4.00
2262 3409 5.703730 AAAACTATTTCCTCCGTCCCATA 57.296 39.130 0.00 0.00 0.00 2.74
2263 3410 5.703730 AAACTATTTCCTCCGTCCCATAA 57.296 39.130 0.00 0.00 0.00 1.90
2264 3411 5.906772 AACTATTTCCTCCGTCCCATAAT 57.093 39.130 0.00 0.00 0.00 1.28
2265 3412 7.383156 AAACTATTTCCTCCGTCCCATAATA 57.617 36.000 0.00 0.00 0.00 0.98
2266 3413 7.569599 AACTATTTCCTCCGTCCCATAATAT 57.430 36.000 0.00 0.00 0.00 1.28
2267 3414 8.674925 AACTATTTCCTCCGTCCCATAATATA 57.325 34.615 0.00 0.00 0.00 0.86
2268 3415 8.674925 ACTATTTCCTCCGTCCCATAATATAA 57.325 34.615 0.00 0.00 0.00 0.98
2269 3416 8.759782 ACTATTTCCTCCGTCCCATAATATAAG 58.240 37.037 0.00 0.00 0.00 1.73
2270 3417 7.808279 ATTTCCTCCGTCCCATAATATAAGA 57.192 36.000 0.00 0.00 0.00 2.10
2271 3418 6.852420 TTCCTCCGTCCCATAATATAAGAG 57.148 41.667 0.00 0.00 0.00 2.85
2272 3419 4.710375 TCCTCCGTCCCATAATATAAGAGC 59.290 45.833 0.00 0.00 0.00 4.09
2273 3420 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
2274 3421 5.129485 CCTCCGTCCCATAATATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
2275 3422 6.352222 CCTCCGTCCCATAATATAAGAGCATT 60.352 42.308 0.00 0.00 0.00 3.56
2276 3423 7.016153 TCCGTCCCATAATATAAGAGCATTT 57.984 36.000 0.00 0.00 0.00 2.32
2277 3424 7.458397 TCCGTCCCATAATATAAGAGCATTTT 58.542 34.615 0.00 0.00 0.00 1.82
2278 3425 7.942341 TCCGTCCCATAATATAAGAGCATTTTT 59.058 33.333 0.00 0.00 0.00 1.94
2279 3426 9.226606 CCGTCCCATAATATAAGAGCATTTTTA 57.773 33.333 0.00 0.00 0.00 1.52
2303 3450 7.672983 ACAAATGCTCTTATATTATGGGACG 57.327 36.000 0.00 0.00 0.00 4.79
2304 3451 6.655003 ACAAATGCTCTTATATTATGGGACGG 59.345 38.462 0.00 0.00 0.00 4.79
2305 3452 6.620877 AATGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
2306 3453 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
2307 3454 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
2308 3455 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2309 3456 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2310 3457 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2311 3458 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2428 3580 7.617533 AGTACATTTTTGTGTTTGTATTCGC 57.382 32.000 0.00 0.00 33.62 4.70
2429 3581 7.197017 AGTACATTTTTGTGTTTGTATTCGCA 58.803 30.769 0.00 0.00 33.62 5.10
2430 3582 6.893958 ACATTTTTGTGTTTGTATTCGCAA 57.106 29.167 0.00 0.00 33.25 4.85
2431 3583 6.700978 ACATTTTTGTGTTTGTATTCGCAAC 58.299 32.000 0.00 0.00 34.52 4.17
2433 3585 4.640789 TTTGTGTTTGTATTCGCAACCT 57.359 36.364 0.00 0.00 34.52 3.50
2434 3586 4.640789 TTGTGTTTGTATTCGCAACCTT 57.359 36.364 0.00 0.00 0.00 3.50
2435 3587 4.640789 TGTGTTTGTATTCGCAACCTTT 57.359 36.364 0.00 0.00 0.00 3.11
2436 3588 4.602995 TGTGTTTGTATTCGCAACCTTTC 58.397 39.130 0.00 0.00 0.00 2.62
2437 3589 3.662186 GTGTTTGTATTCGCAACCTTTCG 59.338 43.478 0.00 0.00 0.00 3.46
2442 3600 1.453155 ATTCGCAACCTTTCGAGCAT 58.547 45.000 0.00 0.00 36.02 3.79
2483 3641 9.882996 TGTTCTTAAGTACGATAATACGGTATG 57.117 33.333 0.58 0.00 37.61 2.39
2518 3676 4.142138 ACTCTCTCCTTATACAAAGCCACG 60.142 45.833 0.00 0.00 0.00 4.94
2523 3681 4.751060 TCCTTATACAAAGCCACGTACTG 58.249 43.478 0.00 0.00 0.00 2.74
2524 3682 4.221262 TCCTTATACAAAGCCACGTACTGT 59.779 41.667 0.00 0.00 0.00 3.55
2525 3683 4.933400 CCTTATACAAAGCCACGTACTGTT 59.067 41.667 0.00 0.00 0.00 3.16
2526 3684 5.163893 CCTTATACAAAGCCACGTACTGTTG 60.164 44.000 0.00 0.11 0.00 3.33
2527 3685 2.032680 ACAAAGCCACGTACTGTTGT 57.967 45.000 0.00 0.71 0.00 3.32
2528 3686 1.937899 ACAAAGCCACGTACTGTTGTC 59.062 47.619 0.00 0.00 0.00 3.18
2529 3687 2.210116 CAAAGCCACGTACTGTTGTCT 58.790 47.619 0.00 0.00 0.00 3.41
2530 3688 2.150397 AAGCCACGTACTGTTGTCTC 57.850 50.000 0.00 0.00 0.00 3.36
2531 3689 1.037493 AGCCACGTACTGTTGTCTCA 58.963 50.000 0.00 0.00 0.00 3.27
2532 3690 1.411246 AGCCACGTACTGTTGTCTCAA 59.589 47.619 0.00 0.00 0.00 3.02
2533 3691 1.792949 GCCACGTACTGTTGTCTCAAG 59.207 52.381 0.00 0.00 0.00 3.02
2534 3692 2.802057 GCCACGTACTGTTGTCTCAAGT 60.802 50.000 0.00 0.00 0.00 3.16
2535 3693 3.050619 CCACGTACTGTTGTCTCAAGTC 58.949 50.000 0.00 0.00 0.00 3.01
2536 3694 3.490249 CCACGTACTGTTGTCTCAAGTCA 60.490 47.826 0.00 0.00 0.00 3.41
2537 3695 4.109766 CACGTACTGTTGTCTCAAGTCAA 58.890 43.478 0.00 0.00 0.00 3.18
2542 3700 6.019075 CGTACTGTTGTCTCAAGTCAAATTGA 60.019 38.462 0.00 0.00 37.60 2.57
2730 3893 6.381133 TGCCTCATATACATCGACATAAGGAT 59.619 38.462 0.00 0.00 0.00 3.24
2731 3894 6.920758 GCCTCATATACATCGACATAAGGATC 59.079 42.308 0.00 0.00 0.00 3.36
2744 3907 6.963242 CGACATAAGGATCACAATTGTTTCTG 59.037 38.462 8.77 6.12 0.00 3.02
2746 3909 7.596494 ACATAAGGATCACAATTGTTTCTGTG 58.404 34.615 8.77 5.67 43.53 3.66
2752 3915 5.437289 TCACAATTGTTTCTGTGCCTAAG 57.563 39.130 8.77 0.00 42.20 2.18
2754 3917 5.359576 TCACAATTGTTTCTGTGCCTAAGTT 59.640 36.000 8.77 0.00 42.20 2.66
2776 3939 3.568000 TGCCACCGCAATGATTAGT 57.432 47.368 0.00 0.00 43.74 2.24
2809 3972 8.206126 TGCATGGTGAGAAATCCTATAGATTA 57.794 34.615 0.00 0.00 44.75 1.75
2851 4014 7.004086 TGAGGTTATCCATGAGTTCTTTTTGT 58.996 34.615 0.00 0.00 35.89 2.83
2860 4023 8.149647 TCCATGAGTTCTTTTTGTTAATGCATT 58.850 29.630 17.56 17.56 0.00 3.56
2942 4113 5.169561 CGTTTCTGCATACAATCAAATACGC 59.830 40.000 0.00 0.00 0.00 4.42
2947 4118 3.563808 GCATACAATCAAATACGCCCAGA 59.436 43.478 0.00 0.00 0.00 3.86
2978 4149 6.998074 ACACCACAATGAAAGATAGTCTGAAA 59.002 34.615 0.00 0.00 0.00 2.69
2982 4153 7.805071 CCACAATGAAAGATAGTCTGAAACAAC 59.195 37.037 0.00 0.00 0.00 3.32
2988 4159 8.204160 TGAAAGATAGTCTGAAACAACAGAGAA 58.796 33.333 0.00 0.00 45.67 2.87
2989 4160 7.954788 AAGATAGTCTGAAACAACAGAGAAC 57.045 36.000 0.00 0.00 45.67 3.01
3006 4177 0.839946 AACAGGTGGAGAAGCACTGT 59.160 50.000 0.00 0.00 43.61 3.55
3009 4180 1.131638 AGGTGGAGAAGCACTGTTGA 58.868 50.000 0.00 0.00 0.00 3.18
3024 4196 5.105716 GCACTGTTGAGAACCTAGTCTATCA 60.106 44.000 0.00 0.00 0.00 2.15
3035 4207 6.146140 ACCTAGTCTATCATCCATGCTAGA 57.854 41.667 0.00 0.00 34.28 2.43
3036 4208 6.556639 ACCTAGTCTATCATCCATGCTAGAA 58.443 40.000 0.00 0.00 37.29 2.10
3059 4231 0.034477 AATACCTCCTTGGCAACCCG 60.034 55.000 0.00 0.00 40.22 5.28
3094 4266 5.538433 TCATATACCATGTCACCAATCTCGA 59.462 40.000 0.00 0.00 0.00 4.04
3103 4275 1.134580 CACCAATCTCGATGCTCTGGT 60.135 52.381 0.00 0.00 37.66 4.00
3105 4277 1.938577 CCAATCTCGATGCTCTGGTTG 59.061 52.381 0.00 0.00 0.00 3.77
3130 4302 1.562783 AAGACCTGGAGTAGAGCCAC 58.437 55.000 0.00 0.00 0.00 5.01
3161 4333 2.703416 TGAGTGGCACTTGCATAAGAG 58.297 47.619 22.98 0.00 44.36 2.85
3165 4337 2.935201 GTGGCACTTGCATAAGAGAGAG 59.065 50.000 11.13 0.00 44.36 3.20
3167 4339 3.261643 TGGCACTTGCATAAGAGAGAGAA 59.738 43.478 3.15 0.00 44.36 2.87
3230 4406 7.818930 AGTTGATTTTTATAACAACCCATGCAG 59.181 33.333 11.17 0.00 42.05 4.41
3244 4420 7.613801 ACAACCCATGCAGAGTTAATAAACATA 59.386 33.333 0.00 0.00 38.12 2.29
3247 4423 7.448469 ACCCATGCAGAGTTAATAAACATATCC 59.552 37.037 0.00 0.00 38.12 2.59
3255 4431 6.002082 AGTTAATAAACATATCCGAAGCCCC 58.998 40.000 0.00 0.00 38.12 5.80
3257 4433 2.348411 AAACATATCCGAAGCCCCAG 57.652 50.000 0.00 0.00 0.00 4.45
3277 4458 6.071334 CCCCAGCTATTAGACGATATCTCAAA 60.071 42.308 0.34 0.00 39.04 2.69
3289 4470 5.236047 ACGATATCTCAAATGAGCAAAGAGC 59.764 40.000 5.53 0.00 41.80 4.09
3310 4491 5.075493 AGCACATGGGGAATTCATTATCTC 58.925 41.667 7.93 0.00 0.00 2.75
3312 4493 5.479375 GCACATGGGGAATTCATTATCTCAT 59.521 40.000 7.93 0.00 0.00 2.90
3352 4533 4.743493 AGTGAAACATTGCGAGTTTTTGT 58.257 34.783 3.07 0.00 41.43 2.83
3363 4544 6.546972 TGCGAGTTTTTGTCACACATATAA 57.453 33.333 0.00 0.00 0.00 0.98
3422 4603 7.901029 TCCTAATTCTAGCTCATCCAAGTATG 58.099 38.462 0.00 0.00 0.00 2.39
3424 4605 8.807118 CCTAATTCTAGCTCATCCAAGTATGTA 58.193 37.037 0.00 0.00 0.00 2.29
3455 4636 5.812642 CCTAGTCACCTAAAACTGCACATAG 59.187 44.000 0.00 0.00 0.00 2.23
3476 4658 5.195848 AGTAGAGCCTAACCTTGTACTCT 57.804 43.478 0.00 0.00 38.09 3.24
3489 4671 5.057149 CCTTGTACTCTAAAAGTGTGCAGT 58.943 41.667 0.00 0.00 39.11 4.40
3496 4678 3.944650 TCTAAAAGTGTGCAGTTTCAGCA 59.055 39.130 5.58 0.00 40.19 4.41
3497 4679 3.591196 AAAAGTGTGCAGTTTCAGCAA 57.409 38.095 5.58 0.00 44.64 3.91
3498 4680 2.566952 AAGTGTGCAGTTTCAGCAAC 57.433 45.000 0.00 0.00 44.64 4.17
3499 4681 1.462616 AGTGTGCAGTTTCAGCAACA 58.537 45.000 0.00 0.00 44.64 3.33
3500 4682 1.818060 AGTGTGCAGTTTCAGCAACAA 59.182 42.857 0.00 0.00 44.64 2.83
3501 4683 1.919918 GTGTGCAGTTTCAGCAACAAC 59.080 47.619 0.00 0.00 44.64 3.32
3502 4684 1.543358 TGTGCAGTTTCAGCAACAACA 59.457 42.857 0.00 0.00 44.64 3.33
3503 4685 2.029560 TGTGCAGTTTCAGCAACAACAA 60.030 40.909 0.00 0.00 44.64 2.83
3504 4686 2.345341 GTGCAGTTTCAGCAACAACAAC 59.655 45.455 0.00 0.00 44.64 3.32
3505 4687 2.029560 TGCAGTTTCAGCAACAACAACA 60.030 40.909 0.00 0.00 39.39 3.33
3506 4688 2.992543 GCAGTTTCAGCAACAACAACAA 59.007 40.909 0.00 0.00 37.93 2.83
3507 4689 3.431572 GCAGTTTCAGCAACAACAACAAA 59.568 39.130 0.00 0.00 37.93 2.83
3547 4729 7.500992 ACATACAATGTAGGAGTGGTGATAAG 58.499 38.462 12.25 0.00 42.78 1.73
3550 4732 6.644347 ACAATGTAGGAGTGGTGATAAGAAG 58.356 40.000 0.00 0.00 0.00 2.85
3582 4764 4.320608 TGGTTTGCAAGCTTAAAAGAGG 57.679 40.909 13.27 0.00 0.00 3.69
3583 4765 3.957497 TGGTTTGCAAGCTTAAAAGAGGA 59.043 39.130 13.27 0.00 0.00 3.71
3586 4768 5.406477 GGTTTGCAAGCTTAAAAGAGGAATG 59.594 40.000 13.27 0.00 0.00 2.67
3588 4770 6.594788 TTGCAAGCTTAAAAGAGGAATGAT 57.405 33.333 0.00 0.00 0.00 2.45
3589 4771 7.701539 TTGCAAGCTTAAAAGAGGAATGATA 57.298 32.000 0.00 0.00 0.00 2.15
3627 4811 8.855110 TGCAGAAGTTAAAATAGAAAATCACCA 58.145 29.630 0.00 0.00 0.00 4.17
3628 4812 9.346725 GCAGAAGTTAAAATAGAAAATCACCAG 57.653 33.333 0.00 0.00 0.00 4.00
3646 4833 8.954950 ATCACCAGATATAATAGCAATAGCAC 57.045 34.615 0.00 0.00 36.44 4.40
3647 4834 7.906327 TCACCAGATATAATAGCAATAGCACA 58.094 34.615 0.00 0.00 45.49 4.57
3671 4858 3.340814 TTTTGTGCTTTGCTGGGAAAA 57.659 38.095 0.00 0.00 0.00 2.29
3694 4881 5.708736 TGGATATCCACATTTGTACACCT 57.291 39.130 20.98 0.00 42.01 4.00
3695 4882 6.816616 TGGATATCCACATTTGTACACCTA 57.183 37.500 20.98 0.00 42.01 3.08
3697 4884 7.223584 TGGATATCCACATTTGTACACCTATG 58.776 38.462 20.98 2.69 42.01 2.23
3698 4885 6.149474 GGATATCCACATTTGTACACCTATGC 59.851 42.308 17.34 0.00 35.64 3.14
3728 4933 9.833917 AAAAAGAGCAAAGAACTAAGTACTACT 57.166 29.630 0.00 0.00 0.00 2.57
3730 4935 7.160547 AGAGCAAAGAACTAAGTACTACTCC 57.839 40.000 0.00 0.00 0.00 3.85
3733 4938 6.015603 AGCAAAGAACTAAGTACTACTCCGTT 60.016 38.462 0.00 0.00 0.00 4.44
3734 4939 6.307558 GCAAAGAACTAAGTACTACTCCGTTC 59.692 42.308 15.92 15.92 37.46 3.95
3735 4940 6.507958 AAGAACTAAGTACTACTCCGTTCC 57.492 41.667 18.13 8.19 37.70 3.62
3736 4941 5.564550 AGAACTAAGTACTACTCCGTTCCA 58.435 41.667 18.13 0.00 37.70 3.53
3737 4942 6.006449 AGAACTAAGTACTACTCCGTTCCAA 58.994 40.000 18.13 0.00 37.70 3.53
3739 4944 6.655078 ACTAAGTACTACTCCGTTCCAAAA 57.345 37.500 0.00 0.00 0.00 2.44
3740 4945 7.237209 ACTAAGTACTACTCCGTTCCAAAAT 57.763 36.000 0.00 0.00 0.00 1.82
3742 4947 8.806146 ACTAAGTACTACTCCGTTCCAAAATAA 58.194 33.333 0.00 0.00 0.00 1.40
3743 4948 9.643693 CTAAGTACTACTCCGTTCCAAAATAAA 57.356 33.333 0.00 0.00 0.00 1.40
3745 4950 8.488651 AGTACTACTCCGTTCCAAAATAAATG 57.511 34.615 0.00 0.00 0.00 2.32
3746 4951 8.098912 AGTACTACTCCGTTCCAAAATAAATGT 58.901 33.333 0.00 0.00 0.00 2.71
3747 4952 7.373778 ACTACTCCGTTCCAAAATAAATGTC 57.626 36.000 0.00 0.00 0.00 3.06
3750 4955 7.989416 ACTCCGTTCCAAAATAAATGTCTTA 57.011 32.000 0.00 0.00 0.00 2.10
3751 4956 8.398878 ACTCCGTTCCAAAATAAATGTCTTAA 57.601 30.769 0.00 0.00 0.00 1.85
3752 4957 9.020731 ACTCCGTTCCAAAATAAATGTCTTAAT 57.979 29.630 0.00 0.00 0.00 1.40
3798 5247 8.677148 AAATAGTACAAAGTTGAGACATGTGT 57.323 30.769 1.15 0.00 32.55 3.72
3799 5248 7.891183 ATAGTACAAAGTTGAGACATGTGTC 57.109 36.000 15.80 15.80 45.08 3.67
3959 5481 3.628646 AATGGGCGTGGAGTGGCTC 62.629 63.158 0.00 0.00 0.00 4.70
3992 5517 0.976073 TGAAGACGATCCTGGGTCCC 60.976 60.000 0.00 0.00 33.66 4.46
4021 5546 3.636231 CCACGTCTTCCCAGGGCA 61.636 66.667 0.00 0.00 0.00 5.36
4023 5548 4.003788 ACGTCTTCCCAGGGCACG 62.004 66.667 18.37 18.37 36.54 5.34
4025 5550 2.747686 GTCTTCCCAGGGCACGAA 59.252 61.111 0.00 0.00 0.00 3.85
4028 5553 2.852075 TTCCCAGGGCACGAAGGT 60.852 61.111 0.00 0.00 0.00 3.50
4275 5800 2.005537 GCAACTTGCAAGTGACGCG 61.006 57.895 31.73 18.12 44.26 6.01
4277 5802 2.180204 AACTTGCAAGTGACGCGCT 61.180 52.632 31.73 12.28 39.66 5.92
4281 5806 0.669012 TTGCAAGTGACGCGCTGATA 60.669 50.000 5.73 0.00 0.00 2.15
4353 5880 5.592104 TCCAAGAGTTTATCAGCGTATGA 57.408 39.130 0.00 0.00 43.70 2.15
4357 5884 6.074088 CCAAGAGTTTATCAGCGTATGACATC 60.074 42.308 0.00 0.00 41.91 3.06
4359 5886 4.632153 AGTTTATCAGCGTATGACATCCC 58.368 43.478 0.00 0.00 41.91 3.85
4364 5891 1.794701 CAGCGTATGACATCCCAATCG 59.205 52.381 0.00 0.00 0.00 3.34
4390 5917 1.883926 ACACAATTTAACTGGGTCGCC 59.116 47.619 0.00 0.00 0.00 5.54
4393 5920 2.224670 ACAATTTAACTGGGTCGCCTCA 60.225 45.455 0.00 0.00 0.00 3.86
4394 5921 3.016736 CAATTTAACTGGGTCGCCTCAT 58.983 45.455 0.00 0.00 0.00 2.90
4395 5922 2.396590 TTTAACTGGGTCGCCTCATC 57.603 50.000 0.00 0.00 0.00 2.92
4396 5923 0.539986 TTAACTGGGTCGCCTCATCC 59.460 55.000 0.00 0.00 0.00 3.51
4397 5924 1.335132 TAACTGGGTCGCCTCATCCC 61.335 60.000 0.00 0.00 41.41 3.85
4399 5926 2.366837 TGGGTCGCCTCATCCCAT 60.367 61.111 0.00 0.00 45.19 4.00
4412 6198 3.940852 CTCATCCCATTCGTTGTCATTGA 59.059 43.478 0.00 0.00 0.00 2.57
4442 6228 1.278172 CTTGATCCGTGCTATCCGCG 61.278 60.000 0.00 0.00 46.55 6.46
4601 6401 7.222805 GGAGAGAAAACGAAAAGAAGCAAAAAT 59.777 33.333 0.00 0.00 0.00 1.82
4602 6402 8.479313 AGAGAAAACGAAAAGAAGCAAAAATT 57.521 26.923 0.00 0.00 0.00 1.82
4603 6403 8.382875 AGAGAAAACGAAAAGAAGCAAAAATTG 58.617 29.630 0.00 0.00 0.00 2.32
4778 6582 3.843619 TCATGGATGTTCTTACTGGTCCA 59.156 43.478 0.00 0.00 36.33 4.02
4799 6786 1.427368 TGGCCCCTTCACAAACACTAT 59.573 47.619 0.00 0.00 0.00 2.12
4824 6811 2.417379 CGAGCGCTAAGGGCATGTATAT 60.417 50.000 11.50 0.00 44.06 0.86
4825 6812 3.181490 CGAGCGCTAAGGGCATGTATATA 60.181 47.826 11.50 0.00 44.06 0.86
4889 6889 7.982761 AAAAACTACGATGTACCATTGGTTA 57.017 32.000 14.78 4.26 37.09 2.85
5015 7015 7.444487 TCTCTTTCATCCATCTCAGCATTTATG 59.556 37.037 0.00 0.00 0.00 1.90
5033 7033 3.543680 ATGCTACGTGGCACTTCTAAT 57.456 42.857 29.60 8.53 45.36 1.73
5037 7037 6.151663 TGCTACGTGGCACTTCTAATATAA 57.848 37.500 23.68 0.00 37.29 0.98
5058 7058 3.620488 ACACCATTGTACATGCCCTAAG 58.380 45.455 0.00 0.00 32.60 2.18
5074 7074 4.101741 GCCCTAAGGAGTGACATGATAAGT 59.898 45.833 0.00 0.00 33.47 2.24
5075 7075 5.304614 GCCCTAAGGAGTGACATGATAAGTA 59.695 44.000 0.00 0.00 33.47 2.24
5096 7096 7.603180 AGTAATGTATAGCAACATCTGGAGA 57.397 36.000 0.55 0.00 39.16 3.71
5097 7097 8.023021 AGTAATGTATAGCAACATCTGGAGAA 57.977 34.615 0.55 0.00 39.16 2.87
5100 7100 6.299805 TGTATAGCAACATCTGGAGAACTT 57.700 37.500 0.00 0.00 0.00 2.66
5121 7121 7.849804 ACTTATAGACAATCCACAACACATC 57.150 36.000 0.00 0.00 0.00 3.06
5192 7192 7.801547 CAAGTTTGCAGTAATTTACAGGATG 57.198 36.000 9.15 0.12 46.00 3.51
5201 7201 6.204301 CAGTAATTTACAGGATGATGGAGCTG 59.796 42.308 9.15 0.00 39.69 4.24
5208 7208 1.134159 GGATGATGGAGCTGAAGCAGT 60.134 52.381 4.90 0.00 45.16 4.40
5257 7261 5.679734 AAGCATGTTTGGCTATAGAATCG 57.320 39.130 3.21 0.00 41.66 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.668510 TCATTTCAATCTACTCAGGATTTAGC 57.331 34.615 0.00 0.00 31.90 3.09
12 13 6.592994 CACTTCTGCTCATTTCAATCTACTCA 59.407 38.462 0.00 0.00 0.00 3.41
26 27 3.452264 ACATATAGCCACACTTCTGCTCA 59.548 43.478 0.00 0.00 36.57 4.26
48 54 1.080093 CAAGCCGCGTCTGGTTAGA 60.080 57.895 4.92 0.00 0.00 2.10
52 60 3.616721 AGACAAGCCGCGTCTGGT 61.617 61.111 0.00 0.00 42.12 4.00
55 63 3.923563 GAGCAGACAAGCCGCGTCT 62.924 63.158 4.92 0.00 44.55 4.18
85 93 2.250031 TGTAAAACTAGCACCGAGGGA 58.750 47.619 0.00 0.00 0.00 4.20
86 94 2.754946 TGTAAAACTAGCACCGAGGG 57.245 50.000 0.00 0.00 0.00 4.30
87 95 3.306166 CGAATGTAAAACTAGCACCGAGG 59.694 47.826 0.00 0.00 0.00 4.63
88 96 4.031426 GTCGAATGTAAAACTAGCACCGAG 59.969 45.833 0.00 0.00 0.00 4.63
89 97 3.922240 GTCGAATGTAAAACTAGCACCGA 59.078 43.478 0.00 0.00 0.00 4.69
90 98 3.241552 CGTCGAATGTAAAACTAGCACCG 60.242 47.826 0.00 0.00 0.00 4.94
91 99 3.061697 CCGTCGAATGTAAAACTAGCACC 59.938 47.826 0.00 0.00 0.00 5.01
107 115 0.179067 AAAAGTGAGGCAACCGTCGA 60.179 50.000 0.00 0.00 37.17 4.20
124 132 3.420893 ACAGGCATCGAGGAATGAAAAA 58.579 40.909 0.00 0.00 0.00 1.94
132 140 3.147595 CCCGACAGGCATCGAGGA 61.148 66.667 12.15 0.00 45.13 3.71
135 143 3.147595 CTCCCCGACAGGCATCGA 61.148 66.667 12.15 0.00 45.13 3.59
181 201 2.230653 CCGGGGATGGATATGGGCA 61.231 63.158 0.00 0.00 0.00 5.36
206 226 4.398988 GGATTTTGCAGGTGATGACATGTA 59.601 41.667 0.00 0.00 36.23 2.29
239 259 2.859992 AGCAAGATGGCTCGTTTCC 58.140 52.632 0.00 0.00 41.05 3.13
341 362 2.125673 GGCGTGCTACCGTGTCAT 60.126 61.111 0.00 0.00 0.00 3.06
342 363 2.646117 TTTGGCGTGCTACCGTGTCA 62.646 55.000 0.00 0.00 0.00 3.58
343 364 1.296056 ATTTGGCGTGCTACCGTGTC 61.296 55.000 0.00 0.00 0.00 3.67
384 405 8.682936 AGATTGGTATTAGCTATTTGGTTCTG 57.317 34.615 0.00 0.00 0.00 3.02
500 523 4.558538 AATCGCTATCATTGGCTTGAAC 57.441 40.909 0.00 0.00 0.00 3.18
583 606 8.122472 ACCATAACTTAATTTTCAGTGAAGGG 57.878 34.615 5.56 0.00 0.00 3.95
617 641 0.179225 CGCGGTTTGATTCTGGAACG 60.179 55.000 0.00 0.00 0.00 3.95
722 749 7.042797 AGGTAGTTTGTCGTTGTACTAAGAA 57.957 36.000 0.00 0.00 0.00 2.52
724 751 7.561556 CAAAGGTAGTTTGTCGTTGTACTAAG 58.438 38.462 0.00 0.00 40.74 2.18
773 805 5.350640 AGTGATCCCTTCGAACGAAAAATAC 59.649 40.000 10.68 6.06 33.34 1.89
774 806 5.484715 AGTGATCCCTTCGAACGAAAAATA 58.515 37.500 10.68 0.00 33.34 1.40
775 807 4.324267 AGTGATCCCTTCGAACGAAAAAT 58.676 39.130 10.68 4.99 33.34 1.82
785 817 7.042335 ACTTCAACTTATTAGTGATCCCTTCG 58.958 38.462 0.00 0.00 34.01 3.79
873 905 5.124776 TCAACGGGAAATGCTGGTTTATAAG 59.875 40.000 0.00 0.00 0.00 1.73
934 966 6.418057 TGGAAAATGCAAACTTGGATAACT 57.582 33.333 0.00 0.00 38.33 2.24
942 974 4.499696 CCTCTCGTTGGAAAATGCAAACTT 60.500 41.667 0.00 0.00 26.96 2.66
944 976 3.308530 CCTCTCGTTGGAAAATGCAAAC 58.691 45.455 0.00 0.00 26.96 2.93
945 977 2.288152 GCCTCTCGTTGGAAAATGCAAA 60.288 45.455 0.00 0.00 26.96 3.68
948 980 0.881118 TGCCTCTCGTTGGAAAATGC 59.119 50.000 0.00 0.00 0.00 3.56
950 982 3.222603 ACTTTGCCTCTCGTTGGAAAAT 58.777 40.909 0.00 0.00 32.15 1.82
954 994 3.478857 TTAACTTTGCCTCTCGTTGGA 57.521 42.857 0.00 0.00 0.00 3.53
956 996 4.035208 ACAGTTTAACTTTGCCTCTCGTTG 59.965 41.667 0.00 0.00 0.00 4.10
958 998 3.805207 ACAGTTTAACTTTGCCTCTCGT 58.195 40.909 0.00 0.00 0.00 4.18
959 999 5.465724 AGTTACAGTTTAACTTTGCCTCTCG 59.534 40.000 0.00 0.00 34.40 4.04
968 1008 9.117183 CTCCCTTACAAAGTTACAGTTTAACTT 57.883 33.333 8.35 8.35 46.22 2.66
973 1013 4.825634 GGCTCCCTTACAAAGTTACAGTTT 59.174 41.667 0.00 0.00 0.00 2.66
982 1025 2.094675 CATGGTGGCTCCCTTACAAAG 58.905 52.381 2.66 0.00 34.77 2.77
992 1035 2.048603 GTGGCTTCCATGGTGGCTC 61.049 63.158 24.97 20.29 37.47 4.70
994 1037 3.070576 GGTGGCTTCCATGGTGGC 61.071 66.667 20.72 20.72 37.47 5.01
1086 1129 2.282745 ACCTTGGCTTCCAGCAGC 60.283 61.111 0.00 0.00 44.75 5.25
1159 1202 2.505498 CGCCGACGACGAAGGAATG 61.505 63.158 9.28 0.00 43.93 2.67
1200 1243 4.479993 GGCATCTGCTGGCCGTCT 62.480 66.667 0.00 0.00 44.46 4.18
1207 1250 1.748122 GGACCAGTGGCATCTGCTG 60.748 63.158 9.78 4.13 41.70 4.41
1591 1705 3.133003 CCCGAACATGGATAGTCACTTCT 59.867 47.826 0.00 0.00 0.00 2.85
1609 1723 0.809385 TGACGCAAACAAAAACCCGA 59.191 45.000 0.00 0.00 0.00 5.14
1610 1724 1.630148 TTGACGCAAACAAAAACCCG 58.370 45.000 0.00 0.00 0.00 5.28
1614 1728 5.726138 GCACATCAATTGACGCAAACAAAAA 60.726 36.000 11.07 0.00 0.00 1.94
1624 1738 4.340263 CTTGATCTGCACATCAATTGACG 58.660 43.478 16.43 4.84 41.06 4.35
1625 1739 4.397103 TCCTTGATCTGCACATCAATTGAC 59.603 41.667 16.43 0.00 41.06 3.18
1899 2013 5.049267 GGAAAAACAAAGGCTGACGTGTATA 60.049 40.000 0.00 0.00 0.00 1.47
1933 3079 4.081642 AGCGGCTATGACTTTCTGAAACTA 60.082 41.667 0.00 0.00 0.00 2.24
1944 3090 1.000827 CTTCATCGAGCGGCTATGACT 60.001 52.381 13.56 0.00 29.40 3.41
1979 3125 6.244552 TGGCTGAGATTCAAGATTCTGTAT 57.755 37.500 0.00 0.00 0.00 2.29
2001 3147 5.462068 TGTAAACTATTTGATCCGATCGCTG 59.538 40.000 10.32 0.00 0.00 5.18
2004 3150 7.464830 AACTGTAAACTATTTGATCCGATCG 57.535 36.000 8.51 8.51 0.00 3.69
2029 3175 8.870879 GCGACTGAAAAATAACTATGTCTAAGT 58.129 33.333 0.00 0.00 0.00 2.24
2030 3176 8.328864 GGCGACTGAAAAATAACTATGTCTAAG 58.671 37.037 0.00 0.00 0.00 2.18
2031 3177 8.038944 AGGCGACTGAAAAATAACTATGTCTAA 58.961 33.333 0.00 0.00 41.13 2.10
2070 3216 9.980780 CAGGTTTGTTTTGTAAATTAAAAGGTG 57.019 29.630 0.00 0.00 0.00 4.00
2092 3238 6.127196 TGAGCAAAACCTTTTCATTTACAGGT 60.127 34.615 0.00 0.00 41.71 4.00
2093 3239 6.279882 TGAGCAAAACCTTTTCATTTACAGG 58.720 36.000 0.00 0.00 0.00 4.00
2094 3240 7.951530 ATGAGCAAAACCTTTTCATTTACAG 57.048 32.000 0.00 0.00 0.00 2.74
2239 3386 4.376225 TGGGACGGAGGAAATAGTTTTT 57.624 40.909 0.00 0.00 0.00 1.94
2241 3388 5.703730 TTATGGGACGGAGGAAATAGTTT 57.296 39.130 0.00 0.00 0.00 2.66
2242 3389 5.906772 ATTATGGGACGGAGGAAATAGTT 57.093 39.130 0.00 0.00 0.00 2.24
2244 3391 8.978472 TCTTATATTATGGGACGGAGGAAATAG 58.022 37.037 0.00 0.00 0.00 1.73
2245 3392 8.904648 TCTTATATTATGGGACGGAGGAAATA 57.095 34.615 0.00 0.00 0.00 1.40
2246 3393 7.581658 GCTCTTATATTATGGGACGGAGGAAAT 60.582 40.741 0.00 0.00 0.00 2.17
2247 3394 6.295688 GCTCTTATATTATGGGACGGAGGAAA 60.296 42.308 0.00 0.00 0.00 3.13
2248 3395 5.187186 GCTCTTATATTATGGGACGGAGGAA 59.813 44.000 0.00 0.00 0.00 3.36
2249 3396 4.710375 GCTCTTATATTATGGGACGGAGGA 59.290 45.833 0.00 0.00 0.00 3.71
2250 3397 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
2251 3398 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
2252 3399 6.620877 AATGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
2253 3400 7.687941 AAAATGCTCTTATATTATGGGACGG 57.312 36.000 0.00 0.00 0.00 4.79
2277 3424 9.214957 CGTCCCATAATATAAGAGCATTTGTAA 57.785 33.333 0.00 0.00 0.00 2.41
2278 3425 7.822334 CCGTCCCATAATATAAGAGCATTTGTA 59.178 37.037 0.00 0.00 0.00 2.41
2279 3426 6.655003 CCGTCCCATAATATAAGAGCATTTGT 59.345 38.462 0.00 0.00 0.00 2.83
2280 3427 6.878923 TCCGTCCCATAATATAAGAGCATTTG 59.121 38.462 0.00 0.00 0.00 2.32
2281 3428 7.016153 TCCGTCCCATAATATAAGAGCATTT 57.984 36.000 0.00 0.00 0.00 2.32
2282 3429 6.352222 CCTCCGTCCCATAATATAAGAGCATT 60.352 42.308 0.00 0.00 0.00 3.56
2283 3430 5.129485 CCTCCGTCCCATAATATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
2284 3431 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
2285 3432 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2286 3433 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2287 3434 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2288 3435 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2289 3436 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2290 3437 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2291 3438 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2292 3439 4.294168 AGATACTCCCTCCGTCCCATAATA 59.706 45.833 0.00 0.00 0.00 0.98
2293 3440 3.077695 AGATACTCCCTCCGTCCCATAAT 59.922 47.826 0.00 0.00 0.00 1.28
2294 3441 2.449730 AGATACTCCCTCCGTCCCATAA 59.550 50.000 0.00 0.00 0.00 1.90
2295 3442 2.071372 AGATACTCCCTCCGTCCCATA 58.929 52.381 0.00 0.00 0.00 2.74
2296 3443 0.861155 AGATACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
2297 3444 0.635009 AAGATACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
2298 3445 1.041437 CAAGATACTCCCTCCGTCCC 58.959 60.000 0.00 0.00 0.00 4.46
2299 3446 0.389757 GCAAGATACTCCCTCCGTCC 59.610 60.000 0.00 0.00 0.00 4.79
2300 3447 1.112113 TGCAAGATACTCCCTCCGTC 58.888 55.000 0.00 0.00 0.00 4.79
2301 3448 1.414181 CATGCAAGATACTCCCTCCGT 59.586 52.381 0.00 0.00 0.00 4.69
2302 3449 1.875576 GCATGCAAGATACTCCCTCCG 60.876 57.143 14.21 0.00 0.00 4.63
2303 3450 1.875576 CGCATGCAAGATACTCCCTCC 60.876 57.143 19.57 0.00 0.00 4.30
2304 3451 1.506493 CGCATGCAAGATACTCCCTC 58.494 55.000 19.57 0.00 0.00 4.30
2305 3452 0.533755 GCGCATGCAAGATACTCCCT 60.534 55.000 19.57 0.00 42.15 4.20
2306 3453 0.533755 AGCGCATGCAAGATACTCCC 60.534 55.000 19.57 0.00 46.23 4.30
2307 3454 1.262683 GAAGCGCATGCAAGATACTCC 59.737 52.381 19.57 0.00 46.23 3.85
2308 3455 1.935873 TGAAGCGCATGCAAGATACTC 59.064 47.619 19.57 4.41 46.23 2.59
2309 3456 2.028420 TGAAGCGCATGCAAGATACT 57.972 45.000 19.57 1.51 46.23 2.12
2310 3457 4.083643 ACATATGAAGCGCATGCAAGATAC 60.084 41.667 19.57 4.20 46.23 2.24
2311 3458 4.067192 ACATATGAAGCGCATGCAAGATA 58.933 39.130 19.57 6.44 46.23 1.98
2347 3494 9.423061 ACACCTCTAAATTATTGAAAACATTGC 57.577 29.630 0.00 0.00 0.00 3.56
2351 3498 9.959749 GAACACACCTCTAAATTATTGAAAACA 57.040 29.630 0.00 0.00 0.00 2.83
2403 3555 7.702772 TGCGAATACAAACACAAAAATGTACTT 59.297 29.630 0.00 0.00 31.65 2.24
2426 3578 0.729116 ATCATGCTCGAAAGGTTGCG 59.271 50.000 0.00 0.00 0.00 4.85
2427 3579 2.927553 AATCATGCTCGAAAGGTTGC 57.072 45.000 0.00 0.00 0.00 4.17
2428 3580 5.551760 ACTAAATCATGCTCGAAAGGTTG 57.448 39.130 0.00 0.00 0.00 3.77
2429 3581 7.865706 ATAACTAAATCATGCTCGAAAGGTT 57.134 32.000 0.00 0.00 0.00 3.50
2457 3615 9.882996 CATACCGTATTATCGTACTTAAGAACA 57.117 33.333 10.09 0.00 0.00 3.18
2518 3676 7.246674 TCAATTTGACTTGAGACAACAGTAC 57.753 36.000 0.00 0.00 31.65 2.73
2710 3873 8.986477 TTGTGATCCTTATGTCGATGTATATG 57.014 34.615 0.00 0.00 0.00 1.78
2719 3882 6.963242 CAGAAACAATTGTGATCCTTATGTCG 59.037 38.462 12.82 0.00 31.69 4.35
2730 3893 4.887071 ACTTAGGCACAGAAACAATTGTGA 59.113 37.500 12.82 0.00 45.79 3.58
2731 3894 5.186996 ACTTAGGCACAGAAACAATTGTG 57.813 39.130 12.82 1.75 45.70 3.33
2764 3927 1.093972 TGCACCCACTAATCATTGCG 58.906 50.000 0.00 0.00 32.49 4.85
2765 3928 2.800629 GCATGCACCCACTAATCATTGC 60.801 50.000 14.21 0.00 0.00 3.56
2776 3939 1.679641 CTCACCATGCATGCACCCA 60.680 57.895 25.37 0.00 0.00 4.51
2816 3979 9.784531 ACTCATGGATAACCTCACAATAAATAG 57.215 33.333 0.00 0.00 37.04 1.73
2860 4023 9.872757 GTTCAGTGTGACGATAAAATTAAGAAA 57.127 29.630 0.00 0.00 0.00 2.52
2863 4026 6.953743 CGGTTCAGTGTGACGATAAAATTAAG 59.046 38.462 0.00 0.00 0.00 1.85
2865 4028 6.157904 TCGGTTCAGTGTGACGATAAAATTA 58.842 36.000 0.00 0.00 0.00 1.40
2866 4029 4.992319 TCGGTTCAGTGTGACGATAAAATT 59.008 37.500 0.00 0.00 0.00 1.82
2867 4030 4.562082 TCGGTTCAGTGTGACGATAAAAT 58.438 39.130 0.00 0.00 0.00 1.82
2868 4031 3.979948 TCGGTTCAGTGTGACGATAAAA 58.020 40.909 0.00 0.00 0.00 1.52
2869 4032 3.646611 TCGGTTCAGTGTGACGATAAA 57.353 42.857 0.00 0.00 0.00 1.40
2870 4033 3.861276 ATCGGTTCAGTGTGACGATAA 57.139 42.857 13.81 0.00 41.83 1.75
2871 4034 3.690628 TGTATCGGTTCAGTGTGACGATA 59.309 43.478 16.07 16.07 43.20 2.92
2872 4035 2.490509 TGTATCGGTTCAGTGTGACGAT 59.509 45.455 17.51 17.51 45.09 3.73
2875 4046 2.735134 GGTTGTATCGGTTCAGTGTGAC 59.265 50.000 0.00 0.00 0.00 3.67
2883 4054 0.441145 GTGTGCGGTTGTATCGGTTC 59.559 55.000 0.00 0.00 0.00 3.62
2885 4056 0.947180 GTGTGTGCGGTTGTATCGGT 60.947 55.000 0.00 0.00 0.00 4.69
2920 4091 5.449862 GGGCGTATTTGATTGTATGCAGAAA 60.450 40.000 0.00 0.00 35.13 2.52
2925 4096 3.563808 TCTGGGCGTATTTGATTGTATGC 59.436 43.478 0.00 0.00 33.20 3.14
2942 4113 0.395036 TTGTGGTGTGGTGTTCTGGG 60.395 55.000 0.00 0.00 0.00 4.45
2947 4118 3.360867 TCTTTCATTGTGGTGTGGTGTT 58.639 40.909 0.00 0.00 0.00 3.32
2978 4149 2.398588 TCTCCACCTGTTCTCTGTTGT 58.601 47.619 0.00 0.00 0.00 3.32
2982 4153 1.345741 TGCTTCTCCACCTGTTCTCTG 59.654 52.381 0.00 0.00 0.00 3.35
2988 4159 0.839946 AACAGTGCTTCTCCACCTGT 59.160 50.000 0.00 0.00 36.38 4.00
2989 4160 1.202687 TCAACAGTGCTTCTCCACCTG 60.203 52.381 0.00 0.00 36.38 4.00
3006 4177 6.239430 GCATGGATGATAGACTAGGTTCTCAA 60.239 42.308 0.00 0.00 0.00 3.02
3009 4180 5.401750 AGCATGGATGATAGACTAGGTTCT 58.598 41.667 0.00 0.00 0.00 3.01
3066 4238 9.155975 GAGATTGGTGACATGGTATATGAATAC 57.844 37.037 0.00 0.00 42.32 1.89
3080 4252 1.827344 AGAGCATCGAGATTGGTGACA 59.173 47.619 0.00 0.00 42.67 3.58
3094 4266 3.416156 GTCTTTCCTTCAACCAGAGCAT 58.584 45.455 0.00 0.00 0.00 3.79
3103 4275 4.489737 TCTACTCCAGGTCTTTCCTTCAA 58.510 43.478 0.00 0.00 45.67 2.69
3105 4277 3.118920 GCTCTACTCCAGGTCTTTCCTTC 60.119 52.174 0.00 0.00 45.67 3.46
3117 4289 1.877576 CGCACAGTGGCTCTACTCCA 61.878 60.000 1.84 0.00 0.00 3.86
3120 4292 2.262915 GCGCACAGTGGCTCTACT 59.737 61.111 0.30 0.00 0.00 2.57
3122 4294 2.262603 CTGCGCACAGTGGCTCTA 59.737 61.111 5.66 0.00 39.22 2.43
3139 4311 2.813754 TCTTATGCAAGTGCCACTCAAC 59.186 45.455 0.00 0.00 41.18 3.18
3203 4379 7.816995 TGCATGGGTTGTTATAAAAATCAACTC 59.183 33.333 13.35 11.17 40.40 3.01
3205 4381 7.816995 TCTGCATGGGTTGTTATAAAAATCAAC 59.183 33.333 1.10 4.88 39.24 3.18
3212 4388 8.588290 ATTAACTCTGCATGGGTTGTTATAAA 57.412 30.769 10.53 0.00 0.00 1.40
3213 4389 9.688091 TTATTAACTCTGCATGGGTTGTTATAA 57.312 29.630 10.53 8.88 0.00 0.98
3214 4390 9.688091 TTTATTAACTCTGCATGGGTTGTTATA 57.312 29.630 10.53 4.82 0.00 0.98
3215 4391 8.466798 GTTTATTAACTCTGCATGGGTTGTTAT 58.533 33.333 10.53 5.51 0.00 1.89
3216 4392 7.448777 TGTTTATTAACTCTGCATGGGTTGTTA 59.551 33.333 10.53 1.97 35.24 2.41
3222 4398 7.361201 CGGATATGTTTATTAACTCTGCATGGG 60.361 40.741 0.00 0.00 35.24 4.00
3230 4406 6.148976 GGGGCTTCGGATATGTTTATTAACTC 59.851 42.308 0.00 0.00 35.24 3.01
3255 4431 9.288124 CTCATTTGAGATATCGTCTAATAGCTG 57.712 37.037 1.15 0.00 44.74 4.24
3257 4433 7.757173 TGCTCATTTGAGATATCGTCTAATAGC 59.243 37.037 11.70 17.68 44.74 2.97
3259 4435 9.981114 TTTGCTCATTTGAGATATCGTCTAATA 57.019 29.630 11.70 0.00 44.74 0.98
3289 4470 8.640063 TTATGAGATAATGAATTCCCCATGTG 57.360 34.615 2.27 0.00 0.00 3.21
3322 4503 5.473504 ACTCGCAATGTTTCACTTATCCTTT 59.526 36.000 0.00 0.00 0.00 3.11
3337 4518 3.433709 TGTGTGACAAAAACTCGCAATG 58.566 40.909 0.00 0.00 30.11 2.82
3392 4573 7.437713 TGGATGAGCTAGAATTAGGAAAAGA 57.562 36.000 0.00 0.00 0.00 2.52
3408 4589 6.998673 AGGGTTTATTACATACTTGGATGAGC 59.001 38.462 0.00 0.00 0.00 4.26
3409 4590 9.712305 CTAGGGTTTATTACATACTTGGATGAG 57.288 37.037 0.00 0.00 0.00 2.90
3412 4593 9.220906 TGACTAGGGTTTATTACATACTTGGAT 57.779 33.333 0.00 0.00 0.00 3.41
3422 4603 9.159364 CAGTTTTAGGTGACTAGGGTTTATTAC 57.841 37.037 0.00 0.00 45.45 1.89
3424 4605 6.657966 GCAGTTTTAGGTGACTAGGGTTTATT 59.342 38.462 0.00 0.00 45.45 1.40
3455 4636 7.401955 TTTAGAGTACAAGGTTAGGCTCTAC 57.598 40.000 0.00 0.00 35.92 2.59
3476 4658 4.082517 TGTTGCTGAAACTGCACACTTTTA 60.083 37.500 0.00 0.00 37.99 1.52
3527 4709 6.878317 TCTTCTTATCACCACTCCTACATTG 58.122 40.000 0.00 0.00 0.00 2.82
3528 4710 6.670027 ACTCTTCTTATCACCACTCCTACATT 59.330 38.462 0.00 0.00 0.00 2.71
3530 4712 5.580998 ACTCTTCTTATCACCACTCCTACA 58.419 41.667 0.00 0.00 0.00 2.74
3547 4729 7.814587 AGCTTGCAAACCAATATTTAACTCTTC 59.185 33.333 0.00 0.00 31.91 2.87
3550 4732 7.889589 AAGCTTGCAAACCAATATTTAACTC 57.110 32.000 0.00 0.00 31.91 3.01
3600 4782 9.129209 GGTGATTTTCTATTTTAACTTCTGCAC 57.871 33.333 0.00 0.00 0.00 4.57
3601 4783 8.855110 TGGTGATTTTCTATTTTAACTTCTGCA 58.145 29.630 0.00 0.00 0.00 4.41
3646 4833 3.626670 TCCCAGCAAAGCACAAAATTTTG 59.373 39.130 25.73 25.73 43.62 2.44
3647 4834 3.883669 TCCCAGCAAAGCACAAAATTTT 58.116 36.364 0.00 0.00 0.00 1.82
3661 4848 3.969466 TGGATATCCATTTTCCCAGCA 57.031 42.857 20.98 0.00 42.01 4.41
3710 4915 6.805760 GGAACGGAGTAGTACTTAGTTCTTTG 59.194 42.308 29.82 10.47 45.00 2.77
3714 4919 5.886960 TGGAACGGAGTAGTACTTAGTTC 57.113 43.478 26.77 26.77 45.00 3.01
3724 4929 7.611213 AGACATTTATTTTGGAACGGAGTAG 57.389 36.000 0.00 0.00 45.00 2.57
3725 4930 7.989416 AAGACATTTATTTTGGAACGGAGTA 57.011 32.000 0.00 0.00 45.00 2.59
3727 4932 9.855021 AATTAAGACATTTATTTTGGAACGGAG 57.145 29.630 0.00 0.00 0.00 4.63
3772 5221 9.120538 ACACATGTCTCAACTTTGTACTATTTT 57.879 29.630 0.00 0.00 0.00 1.82
3885 5405 8.880878 ACCGCTTATTGTTAATTTTCTTTTGT 57.119 26.923 0.00 0.00 0.00 2.83
3891 5411 6.869388 TCCCAAACCGCTTATTGTTAATTTTC 59.131 34.615 0.00 0.00 0.00 2.29
3900 5422 3.866883 AACATCCCAAACCGCTTATTG 57.133 42.857 0.00 0.00 0.00 1.90
3907 5429 0.038343 CCTGCAAACATCCCAAACCG 60.038 55.000 0.00 0.00 0.00 4.44
3933 5455 2.350895 CACGCCCATTCCCAGTGA 59.649 61.111 0.00 0.00 35.03 3.41
3959 5481 4.351938 TTCACGCCACCGTCCTCG 62.352 66.667 0.00 0.00 46.39 4.63
4021 5546 1.605058 CCACATCCTCCGACCTTCGT 61.605 60.000 0.00 0.00 38.40 3.85
4023 5548 0.613777 AACCACATCCTCCGACCTTC 59.386 55.000 0.00 0.00 0.00 3.46
4025 5550 0.544357 TGAACCACATCCTCCGACCT 60.544 55.000 0.00 0.00 0.00 3.85
4028 5553 1.052617 TGTTGAACCACATCCTCCGA 58.947 50.000 0.00 0.00 0.00 4.55
4336 5863 4.686554 GGGATGTCATACGCTGATAAACTC 59.313 45.833 0.00 0.00 35.97 3.01
4353 5880 2.039216 TGTGTTGTACCGATTGGGATGT 59.961 45.455 3.39 0.00 40.75 3.06
4357 5884 4.513198 AAATTGTGTTGTACCGATTGGG 57.487 40.909 3.39 0.00 40.75 4.12
4359 5886 6.580791 CCAGTTAAATTGTGTTGTACCGATTG 59.419 38.462 0.00 0.00 0.00 2.67
4364 5891 5.561339 CGACCCAGTTAAATTGTGTTGTACC 60.561 44.000 0.00 0.00 0.00 3.34
4390 5917 3.940852 TCAATGACAACGAATGGGATGAG 59.059 43.478 0.00 0.00 0.00 2.90
4393 5920 3.016736 GGTCAATGACAACGAATGGGAT 58.983 45.455 15.86 0.00 33.68 3.85
4394 5921 2.432444 GGTCAATGACAACGAATGGGA 58.568 47.619 15.86 0.00 33.68 4.37
4395 5922 1.130373 CGGTCAATGACAACGAATGGG 59.870 52.381 15.86 0.00 33.68 4.00
4396 5923 1.465689 GCGGTCAATGACAACGAATGG 60.466 52.381 15.86 0.00 33.68 3.16
4397 5924 1.196581 TGCGGTCAATGACAACGAATG 59.803 47.619 15.86 0.00 33.68 2.67
4398 5925 1.464608 CTGCGGTCAATGACAACGAAT 59.535 47.619 15.86 0.00 33.68 3.34
4399 5926 0.865111 CTGCGGTCAATGACAACGAA 59.135 50.000 15.86 4.21 33.68 3.85
4412 6198 1.905512 GGATCAAGGTACCTGCGGT 59.094 57.895 17.14 6.07 40.16 5.68
4575 6362 4.813296 TGCTTCTTTTCGTTTTCTCTCC 57.187 40.909 0.00 0.00 0.00 3.71
4576 6363 7.506296 TTTTTGCTTCTTTTCGTTTTCTCTC 57.494 32.000 0.00 0.00 0.00 3.20
4580 6367 8.873242 TTCAATTTTTGCTTCTTTTCGTTTTC 57.127 26.923 0.00 0.00 0.00 2.29
4646 6447 4.109766 CTGTCCCGTTTCTTTTTGGTTTC 58.890 43.478 0.00 0.00 0.00 2.78
4699 6500 4.693095 GGTTCTCTCCTGATTTTGTGTCTC 59.307 45.833 0.00 0.00 0.00 3.36
4700 6501 4.103153 TGGTTCTCTCCTGATTTTGTGTCT 59.897 41.667 0.00 0.00 0.00 3.41
4701 6502 4.389374 TGGTTCTCTCCTGATTTTGTGTC 58.611 43.478 0.00 0.00 0.00 3.67
4702 6503 4.141390 ACTGGTTCTCTCCTGATTTTGTGT 60.141 41.667 0.00 0.00 0.00 3.72
4703 6504 4.392940 ACTGGTTCTCTCCTGATTTTGTG 58.607 43.478 0.00 0.00 0.00 3.33
4704 6505 4.713792 ACTGGTTCTCTCCTGATTTTGT 57.286 40.909 0.00 0.00 0.00 2.83
4705 6506 5.181748 CCTACTGGTTCTCTCCTGATTTTG 58.818 45.833 0.00 0.00 0.00 2.44
4778 6582 0.188342 AGTGTTTGTGAAGGGGCCAT 59.812 50.000 4.39 0.00 0.00 4.40
4799 6786 3.912907 GCCCTTAGCGCTCGCCTA 61.913 66.667 16.34 0.00 43.17 3.93
5015 7015 5.981315 TGTTATATTAGAAGTGCCACGTAGC 59.019 40.000 0.00 0.00 0.00 3.58
5033 7033 5.381184 AGGGCATGTACAATGGTGTTATA 57.619 39.130 0.00 0.00 39.30 0.98
5037 7037 3.620488 CTTAGGGCATGTACAATGGTGT 58.380 45.455 0.00 0.00 42.09 4.16
5058 7058 9.360093 GCTATACATTACTTATCATGTCACTCC 57.640 37.037 0.00 0.00 35.24 3.85
5074 7074 8.023021 AGTTCTCCAGATGTTGCTATACATTA 57.977 34.615 0.00 0.00 38.80 1.90
5075 7075 6.893583 AGTTCTCCAGATGTTGCTATACATT 58.106 36.000 0.00 0.00 38.80 2.71
5086 7086 7.345653 TGGATTGTCTATAAGTTCTCCAGATGT 59.654 37.037 0.00 0.00 0.00 3.06
5096 7096 7.064609 CGATGTGTTGTGGATTGTCTATAAGTT 59.935 37.037 0.00 0.00 0.00 2.66
5097 7097 6.535150 CGATGTGTTGTGGATTGTCTATAAGT 59.465 38.462 0.00 0.00 0.00 2.24
5100 7100 5.128008 TCCGATGTGTTGTGGATTGTCTATA 59.872 40.000 0.00 0.00 0.00 1.31
5192 7192 1.338484 TGTGACTGCTTCAGCTCCATC 60.338 52.381 0.00 0.00 42.66 3.51
5201 7201 2.939022 GCCACGTGTGACTGCTTC 59.061 61.111 15.65 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.