Multiple sequence alignment - TraesCS5A01G185100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G185100 chr5A 100.000 2924 0 0 1 2924 385384393 385381470 0.000000e+00 5400.0
1 TraesCS5A01G185100 chr5A 90.619 1098 61 26 516 1589 690358475 690357396 0.000000e+00 1419.0
2 TraesCS5A01G185100 chr5A 92.357 471 29 3 1722 2186 690357398 690356929 0.000000e+00 664.0
3 TraesCS5A01G185100 chr5A 88.073 436 40 6 2176 2600 690356879 690356445 9.350000e-140 507.0
4 TraesCS5A01G185100 chr5A 96.591 264 7 2 258 519 598682815 598683078 1.240000e-118 436.0
5 TraesCS5A01G185100 chr5A 95.588 272 9 2 258 528 556734461 556734730 1.610000e-117 433.0
6 TraesCS5A01G185100 chr5A 94.203 276 14 2 248 522 618310010 618310284 1.250000e-113 420.0
7 TraesCS5A01G185100 chr5A 97.479 119 3 0 2806 2924 385373454 385373336 1.370000e-48 204.0
8 TraesCS5A01G185100 chr5A 96.639 119 4 0 2806 2924 345815579 345815461 6.390000e-47 198.0
9 TraesCS5A01G185100 chr5A 74.242 396 90 11 1828 2217 404016764 404017153 3.900000e-34 156.0
10 TraesCS5A01G185100 chr5D 93.340 2087 103 20 518 2600 292641636 292639582 0.000000e+00 3051.0
11 TraesCS5A01G185100 chr5D 88.987 227 22 3 1 225 292642023 292641798 7.980000e-71 278.0
12 TraesCS5A01G185100 chr5D 71.688 551 125 24 1689 2217 310497528 310498069 1.100000e-24 124.0
13 TraesCS5A01G185100 chr5B 93.206 2090 100 23 516 2600 333197034 333194982 0.000000e+00 3035.0
14 TraesCS5A01G185100 chr5B 90.233 215 20 1 1 214 333197255 333197041 2.220000e-71 279.0
15 TraesCS5A01G185100 chr5B 70.898 1158 273 51 1037 2169 356358948 356360066 2.280000e-51 213.0
16 TraesCS5A01G185100 chr5B 91.837 49 2 2 2590 2638 333194887 333194933 1.880000e-07 67.6
17 TraesCS5A01G185100 chr4B 88.978 1860 142 31 779 2600 652915857 652914023 0.000000e+00 2241.0
18 TraesCS5A01G185100 chr4B 90.995 211 18 1 5 214 652916488 652916278 1.720000e-72 283.0
19 TraesCS5A01G185100 chr4B 91.626 203 6 5 518 718 652916269 652916076 1.340000e-68 270.0
20 TraesCS5A01G185100 chrUn 87.458 901 47 22 850 1726 127007104 127007962 0.000000e+00 977.0
21 TraesCS5A01G185100 chrUn 86.908 359 18 13 516 861 127006619 127006961 2.750000e-100 375.0
22 TraesCS5A01G185100 chrUn 90.610 213 20 0 2 214 127006400 127006612 1.720000e-72 283.0
23 TraesCS5A01G185100 chrUn 86.154 195 16 2 2017 2211 127007958 127008141 1.780000e-47 200.0
24 TraesCS5A01G185100 chrUn 89.404 151 14 2 2451 2600 127008138 127008287 3.850000e-44 189.0
25 TraesCS5A01G185100 chrUn 91.667 48 4 0 2104 2151 37409967 37410014 1.880000e-07 67.6
26 TraesCS5A01G185100 chr7A 98.473 262 4 0 257 518 679063945 679064206 2.050000e-126 462.0
27 TraesCS5A01G185100 chr7A 97.388 268 7 0 251 518 566529869 566530136 9.550000e-125 457.0
28 TraesCS5A01G185100 chr7A 97.328 262 7 0 258 519 80195814 80195553 2.070000e-121 446.0
29 TraesCS5A01G185100 chr7A 97.479 119 3 0 2806 2924 451546923 451547041 1.370000e-48 204.0
30 TraesCS5A01G185100 chr7A 97.479 119 3 0 2806 2924 451553684 451553802 1.370000e-48 204.0
31 TraesCS5A01G185100 chr7A 88.889 126 11 3 2693 2816 122039749 122039625 5.050000e-33 152.0
32 TraesCS5A01G185100 chr2A 97.348 264 6 1 258 521 746759130 746759392 5.750000e-122 448.0
33 TraesCS5A01G185100 chr2A 94.245 278 13 2 242 518 767788212 767787937 3.480000e-114 422.0
34 TraesCS5A01G185100 chr2A 96.610 118 4 0 2806 2923 133791501 133791618 2.300000e-46 196.0
35 TraesCS5A01G185100 chr6A 96.198 263 9 1 257 518 169184442 169184704 2.080000e-116 429.0
36 TraesCS5A01G185100 chr6A 97.479 119 3 0 2806 2924 478439832 478439714 1.370000e-48 204.0
37 TraesCS5A01G185100 chr1A 98.319 119 2 0 2806 2924 77686092 77686210 2.950000e-50 209.0
38 TraesCS5A01G185100 chr1A 97.458 118 3 0 2806 2923 48719027 48718910 4.940000e-48 202.0
39 TraesCS5A01G185100 chr4A 97.479 119 3 0 2806 2924 163806282 163806400 1.370000e-48 204.0
40 TraesCS5A01G185100 chr6B 91.667 120 10 0 2697 2816 475659452 475659333 1.800000e-37 167.0
41 TraesCS5A01G185100 chr6B 88.800 125 12 2 2693 2816 286910997 286910874 5.050000e-33 152.0
42 TraesCS5A01G185100 chr1B 92.241 116 9 0 2701 2816 242744595 242744480 6.480000e-37 165.0
43 TraesCS5A01G185100 chr1B 90.435 115 11 0 2695 2809 465619158 465619044 5.050000e-33 152.0
44 TraesCS5A01G185100 chr1B 90.265 113 11 0 2697 2809 527770048 527769936 6.530000e-32 148.0
45 TraesCS5A01G185100 chr7B 92.793 111 7 1 2699 2809 576660044 576660153 3.020000e-35 159.0
46 TraesCS5A01G185100 chr6D 89.167 120 11 2 2698 2816 454270790 454270672 6.530000e-32 148.0
47 TraesCS5A01G185100 chr2D 90.265 113 11 0 2697 2809 175451552 175451440 6.530000e-32 148.0
48 TraesCS5A01G185100 chr7D 81.053 95 11 4 2 89 436111115 436111021 5.230000e-08 69.4
49 TraesCS5A01G185100 chr3D 91.667 48 4 0 2104 2151 17699368 17699415 1.880000e-07 67.6
50 TraesCS5A01G185100 chr3A 91.111 45 2 2 2090 2133 8909174 8909131 3.150000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G185100 chr5A 385381470 385384393 2923 True 5400.000000 5400 100.000000 1 2924 1 chr5A.!!$R3 2923
1 TraesCS5A01G185100 chr5A 690356445 690358475 2030 True 863.333333 1419 90.349667 516 2600 3 chr5A.!!$R4 2084
2 TraesCS5A01G185100 chr5D 292639582 292642023 2441 True 1664.500000 3051 91.163500 1 2600 2 chr5D.!!$R1 2599
3 TraesCS5A01G185100 chr5B 333194982 333197255 2273 True 1657.000000 3035 91.719500 1 2600 2 chr5B.!!$R1 2599
4 TraesCS5A01G185100 chr5B 356358948 356360066 1118 False 213.000000 213 70.898000 1037 2169 1 chr5B.!!$F2 1132
5 TraesCS5A01G185100 chr4B 652914023 652916488 2465 True 931.333333 2241 90.533000 5 2600 3 chr4B.!!$R1 2595
6 TraesCS5A01G185100 chrUn 127006400 127008287 1887 False 404.800000 977 88.106800 2 2600 5 chrUn.!!$F2 2598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 134 0.694444 GAAGGGAGTAGATGGGGCCA 60.694 60.000 4.39 0.0 0.00 5.36 F
891 1276 1.069978 TGATTGAGCAGTCGTTGACCA 59.930 47.619 0.00 0.0 32.18 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 1894 2.202932 GGATCGTGGCTGATGCGT 60.203 61.111 0.00 0.0 40.82 5.24 R
2353 2855 0.039978 CACGGACTCCATAGCTAGCG 60.040 60.000 9.55 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.846693 AACTCCTCCACAAGCAGGTT 59.153 50.000 0.00 0.00 0.00 3.50
131 133 1.759459 CGAAGGGAGTAGATGGGGCC 61.759 65.000 0.00 0.00 0.00 5.80
132 134 0.694444 GAAGGGAGTAGATGGGGCCA 60.694 60.000 4.39 0.00 0.00 5.36
214 217 3.777807 GCACTGCTGCTGTATATTACG 57.222 47.619 11.92 0.00 40.63 3.18
215 218 3.123804 GCACTGCTGCTGTATATTACGT 58.876 45.455 11.92 0.00 40.63 3.57
216 219 4.295870 GCACTGCTGCTGTATATTACGTA 58.704 43.478 11.92 0.00 40.63 3.57
217 220 4.148348 GCACTGCTGCTGTATATTACGTAC 59.852 45.833 11.92 0.00 40.63 3.67
218 221 5.520632 CACTGCTGCTGTATATTACGTACT 58.479 41.667 11.92 0.00 0.00 2.73
219 222 5.977725 CACTGCTGCTGTATATTACGTACTT 59.022 40.000 11.92 0.00 0.00 2.24
220 223 6.142480 CACTGCTGCTGTATATTACGTACTTC 59.858 42.308 11.92 0.00 0.00 3.01
221 224 5.526115 TGCTGCTGTATATTACGTACTTCC 58.474 41.667 0.00 0.00 0.00 3.46
222 225 5.301045 TGCTGCTGTATATTACGTACTTCCT 59.699 40.000 0.00 0.00 0.00 3.36
223 226 5.857517 GCTGCTGTATATTACGTACTTCCTC 59.142 44.000 0.00 0.00 0.00 3.71
224 227 6.323203 TGCTGTATATTACGTACTTCCTCC 57.677 41.667 0.00 0.00 0.00 4.30
225 228 5.829391 TGCTGTATATTACGTACTTCCTCCA 59.171 40.000 0.00 0.00 0.00 3.86
226 229 6.321945 TGCTGTATATTACGTACTTCCTCCAA 59.678 38.462 0.00 0.00 0.00 3.53
227 230 6.862090 GCTGTATATTACGTACTTCCTCCAAG 59.138 42.308 0.00 0.00 38.21 3.61
228 231 6.742109 TGTATATTACGTACTTCCTCCAAGC 58.258 40.000 0.00 0.00 35.17 4.01
229 232 6.548622 TGTATATTACGTACTTCCTCCAAGCT 59.451 38.462 0.00 0.00 35.17 3.74
230 233 4.820894 ATTACGTACTTCCTCCAAGCTT 57.179 40.909 0.00 0.00 35.17 3.74
231 234 4.612264 TTACGTACTTCCTCCAAGCTTT 57.388 40.909 0.00 0.00 35.17 3.51
232 235 3.487120 ACGTACTTCCTCCAAGCTTTT 57.513 42.857 0.00 0.00 35.17 2.27
233 236 3.816994 ACGTACTTCCTCCAAGCTTTTT 58.183 40.909 0.00 0.00 35.17 1.94
252 255 4.748277 TTTTGGACGGAGGGAATACTAG 57.252 45.455 0.00 0.00 0.00 2.57
253 256 3.393426 TTGGACGGAGGGAATACTAGT 57.607 47.619 0.00 0.00 0.00 2.57
254 257 3.393426 TGGACGGAGGGAATACTAGTT 57.607 47.619 0.00 0.00 0.00 2.24
255 258 3.716431 TGGACGGAGGGAATACTAGTTT 58.284 45.455 0.00 0.00 0.00 2.66
256 259 3.449737 TGGACGGAGGGAATACTAGTTTG 59.550 47.826 0.00 0.00 0.00 2.93
260 263 5.267587 ACGGAGGGAATACTAGTTTGTACT 58.732 41.667 0.00 0.00 38.44 2.73
270 273 3.899980 ACTAGTTTGTACTCCCTCCGTTT 59.100 43.478 0.00 0.00 35.78 3.60
271 274 3.851458 AGTTTGTACTCCCTCCGTTTT 57.149 42.857 0.00 0.00 0.00 2.43
274 277 5.872963 AGTTTGTACTCCCTCCGTTTTTAT 58.127 37.500 0.00 0.00 0.00 1.40
275 278 6.301486 AGTTTGTACTCCCTCCGTTTTTATT 58.699 36.000 0.00 0.00 0.00 1.40
278 281 7.910441 TTGTACTCCCTCCGTTTTTATTTAG 57.090 36.000 0.00 0.00 0.00 1.85
279 282 7.008021 TGTACTCCCTCCGTTTTTATTTAGT 57.992 36.000 0.00 0.00 0.00 2.24
280 283 7.099120 TGTACTCCCTCCGTTTTTATTTAGTC 58.901 38.462 0.00 0.00 0.00 2.59
281 284 5.494724 ACTCCCTCCGTTTTTATTTAGTCC 58.505 41.667 0.00 0.00 0.00 3.85
282 285 4.506758 TCCCTCCGTTTTTATTTAGTCCG 58.493 43.478 0.00 0.00 0.00 4.79
284 287 3.685756 CCTCCGTTTTTATTTAGTCCGCA 59.314 43.478 0.00 0.00 0.00 5.69
286 289 5.524646 CCTCCGTTTTTATTTAGTCCGCATA 59.475 40.000 0.00 0.00 0.00 3.14
287 290 6.204108 CCTCCGTTTTTATTTAGTCCGCATAT 59.796 38.462 0.00 0.00 0.00 1.78
291 294 7.532884 CCGTTTTTATTTAGTCCGCATATTAGC 59.467 37.037 0.00 0.00 0.00 3.09
292 295 8.280497 CGTTTTTATTTAGTCCGCATATTAGCT 58.720 33.333 0.00 0.00 0.00 3.32
293 296 9.946165 GTTTTTATTTAGTCCGCATATTAGCTT 57.054 29.630 0.00 0.00 0.00 3.74
295 298 9.944663 TTTTATTTAGTCCGCATATTAGCTTTG 57.055 29.630 0.00 0.00 0.00 2.77
296 299 6.560253 ATTTAGTCCGCATATTAGCTTTGG 57.440 37.500 0.00 0.00 0.00 3.28
297 300 3.560636 AGTCCGCATATTAGCTTTGGT 57.439 42.857 0.00 0.00 0.00 3.67
298 301 3.467803 AGTCCGCATATTAGCTTTGGTC 58.532 45.455 0.00 0.00 0.00 4.02
300 303 3.625764 GTCCGCATATTAGCTTTGGTCAA 59.374 43.478 0.00 0.00 0.00 3.18
323 330 7.812309 AAAGTCAAGCTTTGTAAGTTTTGAC 57.188 32.000 19.57 19.57 45.00 3.18
327 334 8.548433 GTCAAGCTTTGTAAGTTTTGACTAAG 57.452 34.615 19.73 5.96 43.65 2.18
329 336 8.736244 TCAAGCTTTGTAAGTTTTGACTAAGTT 58.264 29.630 0.00 0.00 32.90 2.66
477 484 3.769536 ACTTTGCAAAGTTTGACTTCGG 58.230 40.909 33.85 11.40 46.52 4.30
478 485 3.192633 ACTTTGCAAAGTTTGACTTCGGT 59.807 39.130 33.85 12.02 46.52 4.69
479 486 3.414549 TTGCAAAGTTTGACTTCGGTC 57.585 42.857 19.82 0.00 37.47 4.79
492 499 5.405331 GACTTCGGTCAAACCTAATATGC 57.595 43.478 0.00 0.00 43.91 3.14
493 500 4.839121 ACTTCGGTCAAACCTAATATGCA 58.161 39.130 0.00 0.00 35.66 3.96
494 501 4.876107 ACTTCGGTCAAACCTAATATGCAG 59.124 41.667 0.00 0.00 35.66 4.41
495 502 4.746535 TCGGTCAAACCTAATATGCAGA 57.253 40.909 0.00 0.00 35.66 4.26
496 503 4.439057 TCGGTCAAACCTAATATGCAGAC 58.561 43.478 0.00 0.00 35.66 3.51
497 504 4.161565 TCGGTCAAACCTAATATGCAGACT 59.838 41.667 0.00 0.00 35.66 3.24
498 505 5.361571 TCGGTCAAACCTAATATGCAGACTA 59.638 40.000 0.00 0.00 35.66 2.59
499 506 6.046593 CGGTCAAACCTAATATGCAGACTAA 58.953 40.000 0.00 0.00 35.66 2.24
500 507 6.537301 CGGTCAAACCTAATATGCAGACTAAA 59.463 38.462 0.00 0.00 35.66 1.85
501 508 7.226720 CGGTCAAACCTAATATGCAGACTAAAT 59.773 37.037 0.00 0.00 35.66 1.40
502 509 9.555727 GGTCAAACCTAATATGCAGACTAAATA 57.444 33.333 0.00 0.00 34.73 1.40
513 520 6.817765 TGCAGACTAAATAAAAACAGAGGG 57.182 37.500 0.00 0.00 0.00 4.30
514 521 6.539173 TGCAGACTAAATAAAAACAGAGGGA 58.461 36.000 0.00 0.00 0.00 4.20
583 591 6.968263 ACAGCTCTCTACATGCTTAGATTA 57.032 37.500 0.00 0.00 34.51 1.75
584 592 7.353414 ACAGCTCTCTACATGCTTAGATTAA 57.647 36.000 0.00 0.00 34.51 1.40
585 593 7.961351 ACAGCTCTCTACATGCTTAGATTAAT 58.039 34.615 0.00 0.00 34.51 1.40
586 594 8.428063 ACAGCTCTCTACATGCTTAGATTAATT 58.572 33.333 0.00 0.00 34.51 1.40
655 665 7.181569 TCCCATTTAATTTCCATGACTTTCC 57.818 36.000 0.00 0.00 0.00 3.13
690 887 3.479006 CGATAGCTTTGTGTTTCCAACG 58.521 45.455 0.00 0.00 0.00 4.10
728 927 9.578576 TCTACCCATAATATACAAACGACTAGT 57.421 33.333 0.00 0.00 0.00 2.57
729 928 9.837525 CTACCCATAATATACAAACGACTAGTC 57.162 37.037 13.18 13.18 0.00 2.59
763 969 1.985614 TGGAGTGGCCATCAGTGAG 59.014 57.895 9.72 0.00 43.33 3.51
784 990 5.064441 AGATGCAGCCATTCTAAACAAAC 57.936 39.130 0.00 0.00 0.00 2.93
891 1276 1.069978 TGATTGAGCAGTCGTTGACCA 59.930 47.619 0.00 0.00 32.18 4.02
906 1294 7.040686 AGTCGTTGACCAAAGTTTATATTTGCT 60.041 33.333 0.00 0.00 36.52 3.91
971 1373 4.278669 ACGCAGAAAAACTCTCTGACTAGA 59.721 41.667 0.00 0.00 42.51 2.43
1245 1651 2.046700 GACGTTTCGGGCATCCCA 60.047 61.111 2.47 0.00 45.83 4.37
1455 1867 3.723554 GTCGTTCTTCGGCATCTCT 57.276 52.632 0.00 0.00 44.22 3.10
1804 2219 2.757077 CCAGCCCCCGTCTTCTTT 59.243 61.111 0.00 0.00 0.00 2.52
2050 2485 1.203187 AGGCTTGGTGGTGAGAGAGTA 60.203 52.381 0.00 0.00 0.00 2.59
2085 2520 0.599558 GATTTTGCAGCACCAGAGCA 59.400 50.000 0.00 0.00 36.85 4.26
2186 2681 3.520290 ATGCATGCTGATCAACCTTTG 57.480 42.857 20.33 0.00 0.00 2.77
2193 2688 2.287547 GCTGATCAACCTTTGAACGCAA 60.288 45.455 0.00 0.00 43.95 4.85
2195 2690 2.685388 TGATCAACCTTTGAACGCAACA 59.315 40.909 0.00 0.00 43.95 3.33
2204 2699 5.040635 CCTTTGAACGCAACATTTGTAGTT 58.959 37.500 2.93 2.93 36.74 2.24
2219 2714 8.043113 ACATTTGTAGTTGATGAGCTCAAGATA 58.957 33.333 22.50 6.93 44.44 1.98
2285 2787 3.304257 CACGAGCGAGGAAATATCAGAG 58.696 50.000 0.00 0.00 0.00 3.35
2493 2998 7.604164 AGTCTTGAGATGTTTAATTGTCATCGT 59.396 33.333 11.05 4.00 41.63 3.73
2568 3085 4.517952 TTATGTTGGTCACTGGCATTTG 57.482 40.909 0.00 0.00 0.00 2.32
2576 3093 2.490903 GTCACTGGCATTTGCTTCTCAT 59.509 45.455 2.12 0.00 41.70 2.90
2587 3105 3.986996 TGCTTCTCATGTCTTGGATGA 57.013 42.857 0.00 0.00 0.00 2.92
2619 3137 8.990163 TTATATTTCAGGATAGTCCCCAAAAC 57.010 34.615 0.00 0.00 37.19 2.43
2620 3138 4.733077 TTTCAGGATAGTCCCCAAAACA 57.267 40.909 0.00 0.00 37.19 2.83
2621 3139 4.301072 TTCAGGATAGTCCCCAAAACAG 57.699 45.455 0.00 0.00 37.19 3.16
2622 3140 3.526899 TCAGGATAGTCCCCAAAACAGA 58.473 45.455 0.00 0.00 37.19 3.41
2623 3141 3.913799 TCAGGATAGTCCCCAAAACAGAA 59.086 43.478 0.00 0.00 37.19 3.02
2624 3142 4.540099 TCAGGATAGTCCCCAAAACAGAAT 59.460 41.667 0.00 0.00 37.19 2.40
2625 3143 5.015178 TCAGGATAGTCCCCAAAACAGAATT 59.985 40.000 0.00 0.00 37.19 2.17
2626 3144 6.216662 TCAGGATAGTCCCCAAAACAGAATTA 59.783 38.462 0.00 0.00 37.19 1.40
2627 3145 6.889722 CAGGATAGTCCCCAAAACAGAATTAA 59.110 38.462 0.00 0.00 37.19 1.40
2628 3146 7.396055 CAGGATAGTCCCCAAAACAGAATTAAA 59.604 37.037 0.00 0.00 37.19 1.52
2629 3147 8.122481 AGGATAGTCCCCAAAACAGAATTAAAT 58.878 33.333 0.00 0.00 37.19 1.40
2630 3148 8.197439 GGATAGTCCCCAAAACAGAATTAAATG 58.803 37.037 0.00 0.00 0.00 2.32
2631 3149 6.358974 AGTCCCCAAAACAGAATTAAATGG 57.641 37.500 0.00 0.00 0.00 3.16
2632 3150 5.843969 AGTCCCCAAAACAGAATTAAATGGT 59.156 36.000 0.00 0.00 0.00 3.55
2633 3151 6.014584 AGTCCCCAAAACAGAATTAAATGGTC 60.015 38.462 0.00 0.00 0.00 4.02
2634 3152 5.247337 TCCCCAAAACAGAATTAAATGGTCC 59.753 40.000 0.00 0.00 0.00 4.46
2635 3153 5.487433 CCCAAAACAGAATTAAATGGTCCC 58.513 41.667 0.00 0.00 0.00 4.46
2636 3154 5.012561 CCCAAAACAGAATTAAATGGTCCCA 59.987 40.000 0.00 0.00 0.00 4.37
2637 3155 6.465035 CCCAAAACAGAATTAAATGGTCCCAA 60.465 38.462 0.00 0.00 0.00 4.12
2638 3156 6.995091 CCAAAACAGAATTAAATGGTCCCAAA 59.005 34.615 0.00 0.00 0.00 3.28
2639 3157 7.665145 CCAAAACAGAATTAAATGGTCCCAAAT 59.335 33.333 0.00 0.00 0.00 2.32
2640 3158 9.717942 CAAAACAGAATTAAATGGTCCCAAATA 57.282 29.630 0.00 0.00 0.00 1.40
2670 3188 5.912892 TGAAATTGAAAGTTTCCCAAGACC 58.087 37.500 13.01 0.00 35.28 3.85
2671 3189 5.423610 TGAAATTGAAAGTTTCCCAAGACCA 59.576 36.000 13.01 0.68 35.28 4.02
2672 3190 5.948742 AATTGAAAGTTTCCCAAGACCAA 57.051 34.783 13.01 0.00 0.00 3.67
2673 3191 5.948742 ATTGAAAGTTTCCCAAGACCAAA 57.051 34.783 13.01 0.00 0.00 3.28
2674 3192 4.729227 TGAAAGTTTCCCAAGACCAAAC 57.271 40.909 13.01 0.00 0.00 2.93
2675 3193 4.349365 TGAAAGTTTCCCAAGACCAAACT 58.651 39.130 13.01 0.00 41.18 2.66
2676 3194 4.159506 TGAAAGTTTCCCAAGACCAAACTG 59.840 41.667 13.01 0.00 39.70 3.16
2677 3195 2.666317 AGTTTCCCAAGACCAAACTGG 58.334 47.619 0.00 0.00 45.02 4.00
2678 3196 1.686587 GTTTCCCAAGACCAAACTGGG 59.313 52.381 0.00 0.00 43.37 4.45
2679 3197 0.930726 TTCCCAAGACCAAACTGGGT 59.069 50.000 6.27 0.00 43.37 4.51
2680 3198 1.822425 TCCCAAGACCAAACTGGGTA 58.178 50.000 6.27 0.00 43.37 3.69
2681 3199 1.702957 TCCCAAGACCAAACTGGGTAG 59.297 52.381 6.27 0.00 43.37 3.18
2682 3200 1.702957 CCCAAGACCAAACTGGGTAGA 59.297 52.381 0.00 0.00 43.37 2.59
2683 3201 2.290323 CCCAAGACCAAACTGGGTAGAG 60.290 54.545 0.00 0.00 43.37 2.43
2684 3202 2.637872 CCAAGACCAAACTGGGTAGAGA 59.362 50.000 0.00 0.00 43.37 3.10
2685 3203 3.072476 CCAAGACCAAACTGGGTAGAGAA 59.928 47.826 0.00 0.00 43.37 2.87
2686 3204 4.445735 CCAAGACCAAACTGGGTAGAGAAA 60.446 45.833 0.00 0.00 43.37 2.52
2687 3205 5.316987 CAAGACCAAACTGGGTAGAGAAAT 58.683 41.667 0.00 0.00 43.37 2.17
2688 3206 6.472887 CAAGACCAAACTGGGTAGAGAAATA 58.527 40.000 0.00 0.00 43.37 1.40
2689 3207 6.697641 AGACCAAACTGGGTAGAGAAATAA 57.302 37.500 0.00 0.00 43.37 1.40
2690 3208 6.473758 AGACCAAACTGGGTAGAGAAATAAC 58.526 40.000 0.00 0.00 43.37 1.89
2691 3209 5.567430 ACCAAACTGGGTAGAGAAATAACC 58.433 41.667 0.00 0.00 43.37 2.85
2692 3210 5.073965 ACCAAACTGGGTAGAGAAATAACCA 59.926 40.000 0.00 0.00 43.37 3.67
2693 3211 6.007703 CCAAACTGGGTAGAGAAATAACCAA 58.992 40.000 0.00 0.00 41.98 3.67
2694 3212 6.663523 CCAAACTGGGTAGAGAAATAACCAAT 59.336 38.462 0.00 0.00 41.98 3.16
2695 3213 7.148069 CCAAACTGGGTAGAGAAATAACCAATC 60.148 40.741 0.00 0.00 41.98 2.67
2696 3214 6.893020 ACTGGGTAGAGAAATAACCAATCT 57.107 37.500 0.00 0.00 41.98 2.40
2697 3215 7.272144 ACTGGGTAGAGAAATAACCAATCTT 57.728 36.000 0.00 0.00 41.98 2.40
2698 3216 8.388656 ACTGGGTAGAGAAATAACCAATCTTA 57.611 34.615 0.00 0.00 41.98 2.10
2699 3217 8.487028 ACTGGGTAGAGAAATAACCAATCTTAG 58.513 37.037 0.00 0.00 41.98 2.18
2700 3218 7.802117 TGGGTAGAGAAATAACCAATCTTAGG 58.198 38.462 0.00 0.00 39.62 2.69
2701 3219 7.147373 TGGGTAGAGAAATAACCAATCTTAGGG 60.147 40.741 0.00 0.00 39.62 3.53
2702 3220 6.711194 GGTAGAGAAATAACCAATCTTAGGGC 59.289 42.308 0.00 0.00 33.28 5.19
2703 3221 5.696030 AGAGAAATAACCAATCTTAGGGCC 58.304 41.667 0.00 0.00 0.00 5.80
2704 3222 5.193728 AGAGAAATAACCAATCTTAGGGCCA 59.806 40.000 6.18 0.00 0.00 5.36
2705 3223 5.449553 AGAAATAACCAATCTTAGGGCCAG 58.550 41.667 6.18 0.00 0.00 4.85
2706 3224 4.881157 AATAACCAATCTTAGGGCCAGT 57.119 40.909 6.18 0.00 0.00 4.00
2707 3225 4.881157 ATAACCAATCTTAGGGCCAGTT 57.119 40.909 6.18 0.00 0.00 3.16
2708 3226 2.808906 ACCAATCTTAGGGCCAGTTC 57.191 50.000 6.18 0.00 0.00 3.01
2709 3227 2.279173 ACCAATCTTAGGGCCAGTTCT 58.721 47.619 6.18 0.00 0.00 3.01
2710 3228 2.649816 ACCAATCTTAGGGCCAGTTCTT 59.350 45.455 6.18 0.00 0.00 2.52
2711 3229 3.076032 ACCAATCTTAGGGCCAGTTCTTT 59.924 43.478 6.18 0.00 0.00 2.52
2712 3230 4.089361 CCAATCTTAGGGCCAGTTCTTTT 58.911 43.478 6.18 0.00 0.00 2.27
2713 3231 4.082026 CCAATCTTAGGGCCAGTTCTTTTG 60.082 45.833 6.18 0.00 0.00 2.44
2714 3232 4.657814 ATCTTAGGGCCAGTTCTTTTGA 57.342 40.909 6.18 0.00 0.00 2.69
2715 3233 3.751518 TCTTAGGGCCAGTTCTTTTGAC 58.248 45.455 6.18 0.00 0.00 3.18
2716 3234 2.178912 TAGGGCCAGTTCTTTTGACG 57.821 50.000 6.18 0.00 0.00 4.35
2717 3235 0.537371 AGGGCCAGTTCTTTTGACGG 60.537 55.000 6.18 0.00 0.00 4.79
2718 3236 0.822121 GGGCCAGTTCTTTTGACGGT 60.822 55.000 4.39 0.00 0.00 4.83
2719 3237 1.029681 GGCCAGTTCTTTTGACGGTT 58.970 50.000 0.00 0.00 0.00 4.44
2720 3238 1.407618 GGCCAGTTCTTTTGACGGTTT 59.592 47.619 0.00 0.00 0.00 3.27
2721 3239 2.619646 GGCCAGTTCTTTTGACGGTTTA 59.380 45.455 0.00 0.00 0.00 2.01
2722 3240 3.067040 GGCCAGTTCTTTTGACGGTTTAA 59.933 43.478 0.00 0.00 0.00 1.52
2723 3241 4.440387 GGCCAGTTCTTTTGACGGTTTAAA 60.440 41.667 0.00 0.00 0.00 1.52
2724 3242 5.103687 GCCAGTTCTTTTGACGGTTTAAAA 58.896 37.500 0.00 4.81 0.00 1.52
2725 3243 5.577554 GCCAGTTCTTTTGACGGTTTAAAAA 59.422 36.000 0.00 2.92 0.00 1.94
2741 3259 1.763968 AAAAATAAGCCGCCTCCTCC 58.236 50.000 0.00 0.00 0.00 4.30
2742 3260 0.106669 AAAATAAGCCGCCTCCTCCC 60.107 55.000 0.00 0.00 0.00 4.30
2743 3261 1.996070 AAATAAGCCGCCTCCTCCCC 61.996 60.000 0.00 0.00 0.00 4.81
2744 3262 3.714078 ATAAGCCGCCTCCTCCCCA 62.714 63.158 0.00 0.00 0.00 4.96
2745 3263 3.935456 TAAGCCGCCTCCTCCCCAA 62.935 63.158 0.00 0.00 0.00 4.12
2748 3266 3.411517 CCGCCTCCTCCCCAACAT 61.412 66.667 0.00 0.00 0.00 2.71
2749 3267 2.677228 CGCCTCCTCCCCAACATT 59.323 61.111 0.00 0.00 0.00 2.71
2750 3268 1.000896 CGCCTCCTCCCCAACATTT 60.001 57.895 0.00 0.00 0.00 2.32
2751 3269 0.611896 CGCCTCCTCCCCAACATTTT 60.612 55.000 0.00 0.00 0.00 1.82
2752 3270 1.644509 GCCTCCTCCCCAACATTTTT 58.355 50.000 0.00 0.00 0.00 1.94
2753 3271 1.550524 GCCTCCTCCCCAACATTTTTC 59.449 52.381 0.00 0.00 0.00 2.29
2754 3272 2.888212 CCTCCTCCCCAACATTTTTCA 58.112 47.619 0.00 0.00 0.00 2.69
2755 3273 3.444029 CCTCCTCCCCAACATTTTTCAT 58.556 45.455 0.00 0.00 0.00 2.57
2756 3274 4.609301 CCTCCTCCCCAACATTTTTCATA 58.391 43.478 0.00 0.00 0.00 2.15
2757 3275 5.022787 CCTCCTCCCCAACATTTTTCATAA 58.977 41.667 0.00 0.00 0.00 1.90
2758 3276 5.127682 CCTCCTCCCCAACATTTTTCATAAG 59.872 44.000 0.00 0.00 0.00 1.73
2759 3277 4.466015 TCCTCCCCAACATTTTTCATAAGC 59.534 41.667 0.00 0.00 0.00 3.09
2760 3278 4.467438 CCTCCCCAACATTTTTCATAAGCT 59.533 41.667 0.00 0.00 0.00 3.74
2761 3279 5.404466 TCCCCAACATTTTTCATAAGCTG 57.596 39.130 0.00 0.00 0.00 4.24
2762 3280 4.837860 TCCCCAACATTTTTCATAAGCTGT 59.162 37.500 0.00 0.00 0.00 4.40
2763 3281 5.047377 TCCCCAACATTTTTCATAAGCTGTC 60.047 40.000 0.00 0.00 0.00 3.51
2764 3282 5.047092 CCCCAACATTTTTCATAAGCTGTCT 60.047 40.000 0.00 0.00 0.00 3.41
2765 3283 6.095377 CCCAACATTTTTCATAAGCTGTCTC 58.905 40.000 0.00 0.00 0.00 3.36
2766 3284 6.095377 CCAACATTTTTCATAAGCTGTCTCC 58.905 40.000 0.00 0.00 0.00 3.71
2767 3285 5.904362 ACATTTTTCATAAGCTGTCTCCC 57.096 39.130 0.00 0.00 0.00 4.30
2768 3286 5.574188 ACATTTTTCATAAGCTGTCTCCCT 58.426 37.500 0.00 0.00 0.00 4.20
2769 3287 5.649831 ACATTTTTCATAAGCTGTCTCCCTC 59.350 40.000 0.00 0.00 0.00 4.30
2770 3288 4.908601 TTTTCATAAGCTGTCTCCCTCA 57.091 40.909 0.00 0.00 0.00 3.86
2771 3289 5.441718 TTTTCATAAGCTGTCTCCCTCAT 57.558 39.130 0.00 0.00 0.00 2.90
2772 3290 5.441718 TTTCATAAGCTGTCTCCCTCATT 57.558 39.130 0.00 0.00 0.00 2.57
2773 3291 4.679373 TCATAAGCTGTCTCCCTCATTC 57.321 45.455 0.00 0.00 0.00 2.67
2774 3292 4.033009 TCATAAGCTGTCTCCCTCATTCA 58.967 43.478 0.00 0.00 0.00 2.57
2775 3293 4.657504 TCATAAGCTGTCTCCCTCATTCAT 59.342 41.667 0.00 0.00 0.00 2.57
2776 3294 5.131642 TCATAAGCTGTCTCCCTCATTCATT 59.868 40.000 0.00 0.00 0.00 2.57
2777 3295 3.278668 AGCTGTCTCCCTCATTCATTG 57.721 47.619 0.00 0.00 0.00 2.82
2778 3296 2.092538 AGCTGTCTCCCTCATTCATTGG 60.093 50.000 0.00 0.00 0.00 3.16
2779 3297 2.928334 CTGTCTCCCTCATTCATTGGG 58.072 52.381 0.00 0.00 42.20 4.12
2780 3298 1.565759 TGTCTCCCTCATTCATTGGGG 59.434 52.381 0.00 0.00 46.75 4.96
2781 3299 0.552848 TCTCCCTCATTCATTGGGGC 59.447 55.000 0.00 0.00 45.71 5.80
2782 3300 0.554792 CTCCCTCATTCATTGGGGCT 59.445 55.000 0.00 0.00 45.71 5.19
2783 3301 1.009997 TCCCTCATTCATTGGGGCTT 58.990 50.000 0.00 0.00 45.71 4.35
2784 3302 1.063717 TCCCTCATTCATTGGGGCTTC 60.064 52.381 0.00 0.00 45.71 3.86
2785 3303 1.063417 CCCTCATTCATTGGGGCTTCT 60.063 52.381 0.00 0.00 45.71 2.85
2786 3304 2.029623 CCTCATTCATTGGGGCTTCTG 58.970 52.381 0.00 0.00 39.79 3.02
2787 3305 2.357465 CCTCATTCATTGGGGCTTCTGA 60.357 50.000 0.00 0.00 39.79 3.27
2788 3306 3.359033 CTCATTCATTGGGGCTTCTGAA 58.641 45.455 0.00 0.00 32.63 3.02
2789 3307 3.091545 TCATTCATTGGGGCTTCTGAAC 58.908 45.455 0.00 0.00 31.00 3.18
2790 3308 2.978156 TTCATTGGGGCTTCTGAACT 57.022 45.000 0.00 0.00 0.00 3.01
2791 3309 4.018506 TCATTCATTGGGGCTTCTGAACTA 60.019 41.667 0.00 0.00 31.00 2.24
2792 3310 3.634397 TCATTGGGGCTTCTGAACTAG 57.366 47.619 0.00 0.00 0.00 2.57
2793 3311 2.912956 TCATTGGGGCTTCTGAACTAGT 59.087 45.455 0.00 0.00 0.00 2.57
2794 3312 3.330701 TCATTGGGGCTTCTGAACTAGTT 59.669 43.478 8.13 8.13 0.00 2.24
2795 3313 4.534500 TCATTGGGGCTTCTGAACTAGTTA 59.466 41.667 8.42 0.00 0.00 2.24
2796 3314 5.191722 TCATTGGGGCTTCTGAACTAGTTAT 59.808 40.000 8.42 0.00 0.00 1.89
2797 3315 4.487714 TGGGGCTTCTGAACTAGTTATG 57.512 45.455 8.42 4.60 0.00 1.90
2798 3316 3.199946 TGGGGCTTCTGAACTAGTTATGG 59.800 47.826 8.42 2.04 0.00 2.74
2799 3317 3.433740 GGGGCTTCTGAACTAGTTATGGG 60.434 52.174 8.42 0.00 0.00 4.00
2800 3318 3.454812 GGGCTTCTGAACTAGTTATGGGA 59.545 47.826 8.42 1.98 0.00 4.37
2801 3319 4.103311 GGGCTTCTGAACTAGTTATGGGAT 59.897 45.833 8.42 0.00 0.00 3.85
2802 3320 5.307196 GGGCTTCTGAACTAGTTATGGGATA 59.693 44.000 8.42 0.00 0.00 2.59
2803 3321 6.183361 GGGCTTCTGAACTAGTTATGGGATAA 60.183 42.308 8.42 0.00 0.00 1.75
2804 3322 6.706716 GGCTTCTGAACTAGTTATGGGATAAC 59.293 42.308 8.42 0.00 44.18 1.89
2818 3336 9.768662 GTTATGGGATAACTAATACGGAAGAAA 57.231 33.333 0.00 0.00 41.40 2.52
2819 3337 9.991906 TTATGGGATAACTAATACGGAAGAAAG 57.008 33.333 0.00 0.00 0.00 2.62
2820 3338 7.664552 TGGGATAACTAATACGGAAGAAAGA 57.335 36.000 0.00 0.00 0.00 2.52
2821 3339 8.081517 TGGGATAACTAATACGGAAGAAAGAA 57.918 34.615 0.00 0.00 0.00 2.52
2822 3340 8.711170 TGGGATAACTAATACGGAAGAAAGAAT 58.289 33.333 0.00 0.00 0.00 2.40
2823 3341 9.557061 GGGATAACTAATACGGAAGAAAGAATT 57.443 33.333 0.00 0.00 0.00 2.17
2825 3343 9.865484 GATAACTAATACGGAAGAAAGAATTGC 57.135 33.333 0.00 0.00 0.00 3.56
2826 3344 7.681939 AACTAATACGGAAGAAAGAATTGCA 57.318 32.000 0.00 0.00 0.00 4.08
2827 3345 7.073342 ACTAATACGGAAGAAAGAATTGCAC 57.927 36.000 0.00 0.00 0.00 4.57
2828 3346 6.879458 ACTAATACGGAAGAAAGAATTGCACT 59.121 34.615 0.00 0.00 0.00 4.40
2829 3347 5.803020 ATACGGAAGAAAGAATTGCACTC 57.197 39.130 0.00 0.00 0.00 3.51
2830 3348 2.814336 ACGGAAGAAAGAATTGCACTCC 59.186 45.455 0.00 0.00 0.00 3.85
2831 3349 2.159653 CGGAAGAAAGAATTGCACTCCG 60.160 50.000 0.00 0.00 0.00 4.63
2832 3350 2.162408 GGAAGAAAGAATTGCACTCCGG 59.838 50.000 0.00 0.00 0.00 5.14
2833 3351 2.859165 AGAAAGAATTGCACTCCGGA 57.141 45.000 2.93 2.93 0.00 5.14
2834 3352 3.356529 AGAAAGAATTGCACTCCGGAT 57.643 42.857 3.57 0.00 0.00 4.18
2835 3353 4.487714 AGAAAGAATTGCACTCCGGATA 57.512 40.909 3.57 0.00 0.00 2.59
2836 3354 4.446371 AGAAAGAATTGCACTCCGGATAG 58.554 43.478 3.57 0.87 0.00 2.08
2837 3355 2.246719 AGAATTGCACTCCGGATAGC 57.753 50.000 18.46 18.46 0.00 2.97
2838 3356 1.486310 AGAATTGCACTCCGGATAGCA 59.514 47.619 22.64 22.64 34.79 3.49
2840 3358 3.458872 TTGCACTCCGGATAGCAAG 57.541 52.632 29.25 11.36 41.55 4.01
2841 3359 0.901827 TTGCACTCCGGATAGCAAGA 59.098 50.000 29.25 15.88 41.55 3.02
2842 3360 1.123077 TGCACTCCGGATAGCAAGAT 58.877 50.000 23.80 0.00 33.48 2.40
2843 3361 1.202568 TGCACTCCGGATAGCAAGATG 60.203 52.381 23.80 4.40 33.48 2.90
2844 3362 1.069204 GCACTCCGGATAGCAAGATGA 59.931 52.381 19.89 0.00 0.00 2.92
2845 3363 2.289320 GCACTCCGGATAGCAAGATGAT 60.289 50.000 19.89 0.00 0.00 2.45
2846 3364 3.324117 CACTCCGGATAGCAAGATGATG 58.676 50.000 3.57 0.00 0.00 3.07
2847 3365 3.006217 CACTCCGGATAGCAAGATGATGA 59.994 47.826 3.57 0.00 0.00 2.92
2848 3366 3.643320 ACTCCGGATAGCAAGATGATGAA 59.357 43.478 3.57 0.00 0.00 2.57
2849 3367 4.101585 ACTCCGGATAGCAAGATGATGAAA 59.898 41.667 3.57 0.00 0.00 2.69
2850 3368 4.635223 TCCGGATAGCAAGATGATGAAAG 58.365 43.478 0.00 0.00 0.00 2.62
2851 3369 3.188048 CCGGATAGCAAGATGATGAAAGC 59.812 47.826 0.00 0.00 0.00 3.51
2852 3370 4.063689 CGGATAGCAAGATGATGAAAGCT 58.936 43.478 0.00 0.00 36.20 3.74
2853 3371 4.514441 CGGATAGCAAGATGATGAAAGCTT 59.486 41.667 0.00 0.00 33.83 3.74
2854 3372 5.560375 CGGATAGCAAGATGATGAAAGCTTG 60.560 44.000 0.00 0.00 40.40 4.01
2855 3373 5.530171 GGATAGCAAGATGATGAAAGCTTGA 59.470 40.000 0.00 0.00 39.97 3.02
2856 3374 4.966965 AGCAAGATGATGAAAGCTTGAG 57.033 40.909 0.00 0.00 39.97 3.02
2857 3375 4.333690 AGCAAGATGATGAAAGCTTGAGT 58.666 39.130 0.00 0.00 39.97 3.41
2858 3376 4.765856 AGCAAGATGATGAAAGCTTGAGTT 59.234 37.500 0.00 0.00 39.97 3.01
2859 3377 5.243283 AGCAAGATGATGAAAGCTTGAGTTT 59.757 36.000 0.00 0.00 39.97 2.66
2860 3378 5.572126 GCAAGATGATGAAAGCTTGAGTTTC 59.428 40.000 0.00 0.00 39.97 2.78
2861 3379 6.569994 GCAAGATGATGAAAGCTTGAGTTTCT 60.570 38.462 0.00 0.00 39.97 2.52
2862 3380 7.368833 CAAGATGATGAAAGCTTGAGTTTCTT 58.631 34.615 0.00 2.52 39.97 2.52
2863 3381 8.509690 CAAGATGATGAAAGCTTGAGTTTCTTA 58.490 33.333 0.00 0.00 39.97 2.10
2864 3382 8.266392 AGATGATGAAAGCTTGAGTTTCTTAG 57.734 34.615 0.00 0.00 35.34 2.18
2865 3383 8.099537 AGATGATGAAAGCTTGAGTTTCTTAGA 58.900 33.333 0.00 0.00 35.34 2.10
2866 3384 8.627208 ATGATGAAAGCTTGAGTTTCTTAGAA 57.373 30.769 0.00 0.00 35.34 2.10
2867 3385 8.450578 TGATGAAAGCTTGAGTTTCTTAGAAA 57.549 30.769 0.00 2.94 35.34 2.52
2868 3386 8.902806 TGATGAAAGCTTGAGTTTCTTAGAAAA 58.097 29.630 9.14 0.00 35.34 2.29
2869 3387 9.392021 GATGAAAGCTTGAGTTTCTTAGAAAAG 57.608 33.333 9.14 4.55 35.34 2.27
2870 3388 8.506168 TGAAAGCTTGAGTTTCTTAGAAAAGA 57.494 30.769 9.14 0.00 40.03 2.52
2884 3402 8.467402 TCTTAGAAAAGAATCTCGATGAACAC 57.533 34.615 0.00 0.00 38.81 3.32
2885 3403 8.307483 TCTTAGAAAAGAATCTCGATGAACACT 58.693 33.333 0.00 0.00 38.81 3.55
2886 3404 8.833231 TTAGAAAAGAATCTCGATGAACACTT 57.167 30.769 0.00 0.00 0.00 3.16
2887 3405 7.736447 AGAAAAGAATCTCGATGAACACTTT 57.264 32.000 0.00 0.00 31.90 2.66
2888 3406 7.579726 AGAAAAGAATCTCGATGAACACTTTG 58.420 34.615 0.00 0.00 31.45 2.77
2889 3407 7.442364 AGAAAAGAATCTCGATGAACACTTTGA 59.558 33.333 0.00 0.00 31.45 2.69
2890 3408 6.718454 AAGAATCTCGATGAACACTTTGAG 57.282 37.500 0.00 0.00 0.00 3.02
2891 3409 6.030548 AGAATCTCGATGAACACTTTGAGA 57.969 37.500 0.00 0.00 36.95 3.27
2892 3410 6.459066 AGAATCTCGATGAACACTTTGAGAA 58.541 36.000 0.00 0.00 36.22 2.87
2893 3411 7.102346 AGAATCTCGATGAACACTTTGAGAAT 58.898 34.615 0.00 0.00 36.22 2.40
2894 3412 6.659361 ATCTCGATGAACACTTTGAGAATG 57.341 37.500 0.00 0.00 36.22 2.67
2895 3413 5.783111 TCTCGATGAACACTTTGAGAATGA 58.217 37.500 0.00 0.00 30.14 2.57
2896 3414 6.223120 TCTCGATGAACACTTTGAGAATGAA 58.777 36.000 0.00 0.00 30.14 2.57
2897 3415 6.875726 TCTCGATGAACACTTTGAGAATGAAT 59.124 34.615 0.00 0.00 30.14 2.57
2898 3416 7.388776 TCTCGATGAACACTTTGAGAATGAATT 59.611 33.333 0.00 0.00 30.14 2.17
2899 3417 8.546597 TCGATGAACACTTTGAGAATGAATTA 57.453 30.769 0.00 0.00 0.00 1.40
2900 3418 8.998377 TCGATGAACACTTTGAGAATGAATTAA 58.002 29.630 0.00 0.00 0.00 1.40
2901 3419 9.778993 CGATGAACACTTTGAGAATGAATTAAT 57.221 29.630 0.00 0.00 0.00 1.40
2904 3422 9.912634 TGAACACTTTGAGAATGAATTAATTCC 57.087 29.630 22.42 9.65 37.28 3.01
2907 3425 9.918630 ACACTTTGAGAATGAATTAATTCCTTG 57.081 29.630 22.42 11.03 37.28 3.61
2917 3435 9.657419 AATGAATTAATTCCTTGATGAAACACC 57.343 29.630 22.42 0.00 35.97 4.16
2918 3436 8.187913 TGAATTAATTCCTTGATGAAACACCA 57.812 30.769 22.42 0.00 35.97 4.17
2919 3437 8.814931 TGAATTAATTCCTTGATGAAACACCAT 58.185 29.630 22.42 0.00 35.97 3.55
2920 3438 9.090692 GAATTAATTCCTTGATGAAACACCATG 57.909 33.333 16.05 0.00 0.00 3.66
2921 3439 7.537596 TTAATTCCTTGATGAAACACCATGT 57.462 32.000 0.00 0.00 0.00 3.21
2922 3440 5.649782 ATTCCTTGATGAAACACCATGTC 57.350 39.130 0.00 0.00 0.00 3.06
2923 3441 3.073678 TCCTTGATGAAACACCATGTCG 58.926 45.455 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.692368 GAGGTCCTGATGGGGGCA 60.692 66.667 0.00 0.00 35.33 5.36
107 109 1.749634 CCATCTACTCCCTTCGTCGTT 59.250 52.381 0.00 0.00 0.00 3.85
108 110 1.390565 CCATCTACTCCCTTCGTCGT 58.609 55.000 0.00 0.00 0.00 4.34
131 133 1.094785 CGACCAAAACCCTAGCCATG 58.905 55.000 0.00 0.00 0.00 3.66
132 134 0.696501 ACGACCAAAACCCTAGCCAT 59.303 50.000 0.00 0.00 0.00 4.40
204 207 6.548622 AGCTTGGAGGAAGTACGTAATATACA 59.451 38.462 0.00 0.00 33.73 2.29
230 233 4.533311 ACTAGTATTCCCTCCGTCCAAAAA 59.467 41.667 0.00 0.00 0.00 1.94
231 234 4.098894 ACTAGTATTCCCTCCGTCCAAAA 58.901 43.478 0.00 0.00 0.00 2.44
232 235 3.716431 ACTAGTATTCCCTCCGTCCAAA 58.284 45.455 0.00 0.00 0.00 3.28
233 236 3.393426 ACTAGTATTCCCTCCGTCCAA 57.607 47.619 0.00 0.00 0.00 3.53
234 237 3.393426 AACTAGTATTCCCTCCGTCCA 57.607 47.619 0.00 0.00 0.00 4.02
235 238 3.450096 ACAAACTAGTATTCCCTCCGTCC 59.550 47.826 0.00 0.00 0.00 4.79
236 239 4.732672 ACAAACTAGTATTCCCTCCGTC 57.267 45.455 0.00 0.00 0.00 4.79
237 240 5.267587 AGTACAAACTAGTATTCCCTCCGT 58.732 41.667 0.00 0.00 32.84 4.69
238 241 5.221204 GGAGTACAAACTAGTATTCCCTCCG 60.221 48.000 12.40 0.00 42.10 4.63
239 242 6.159299 GGAGTACAAACTAGTATTCCCTCC 57.841 45.833 12.40 12.40 42.10 4.30
243 246 5.221204 CGGAGGGAGTACAAACTAGTATTCC 60.221 48.000 0.00 7.01 45.22 3.01
244 247 5.359292 ACGGAGGGAGTACAAACTAGTATTC 59.641 44.000 0.00 0.00 35.56 1.75
245 248 5.267587 ACGGAGGGAGTACAAACTAGTATT 58.732 41.667 0.00 0.00 35.56 1.89
246 249 4.864726 ACGGAGGGAGTACAAACTAGTAT 58.135 43.478 0.00 0.00 35.56 2.12
247 250 4.307032 ACGGAGGGAGTACAAACTAGTA 57.693 45.455 0.00 0.00 35.56 1.82
248 251 3.166560 ACGGAGGGAGTACAAACTAGT 57.833 47.619 0.00 0.00 35.56 2.57
249 252 4.532314 AAACGGAGGGAGTACAAACTAG 57.468 45.455 0.00 0.00 35.56 2.57
250 253 4.961438 AAAACGGAGGGAGTACAAACTA 57.039 40.909 0.00 0.00 35.56 2.24
251 254 3.851458 AAAACGGAGGGAGTACAAACT 57.149 42.857 0.00 0.00 39.21 2.66
252 255 6.564709 AATAAAAACGGAGGGAGTACAAAC 57.435 37.500 0.00 0.00 0.00 2.93
253 256 7.938490 ACTAAATAAAAACGGAGGGAGTACAAA 59.062 33.333 0.00 0.00 0.00 2.83
254 257 7.452562 ACTAAATAAAAACGGAGGGAGTACAA 58.547 34.615 0.00 0.00 0.00 2.41
255 258 7.008021 ACTAAATAAAAACGGAGGGAGTACA 57.992 36.000 0.00 0.00 0.00 2.90
256 259 6.536582 GGACTAAATAAAAACGGAGGGAGTAC 59.463 42.308 0.00 0.00 0.00 2.73
260 263 4.506758 CGGACTAAATAAAAACGGAGGGA 58.493 43.478 0.00 0.00 0.00 4.20
270 273 8.564574 CCAAAGCTAATATGCGGACTAAATAAA 58.435 33.333 0.00 0.00 38.13 1.40
271 274 7.717875 ACCAAAGCTAATATGCGGACTAAATAA 59.282 33.333 0.00 0.00 38.13 1.40
274 277 5.433526 ACCAAAGCTAATATGCGGACTAAA 58.566 37.500 0.00 0.00 38.13 1.85
275 278 5.031066 ACCAAAGCTAATATGCGGACTAA 57.969 39.130 0.00 0.00 38.13 2.24
278 281 3.202906 TGACCAAAGCTAATATGCGGAC 58.797 45.455 0.00 0.00 38.13 4.79
279 282 3.552132 TGACCAAAGCTAATATGCGGA 57.448 42.857 0.00 0.00 38.13 5.54
280 283 4.601019 CTTTGACCAAAGCTAATATGCGG 58.399 43.478 9.25 0.00 40.94 5.69
302 305 8.182227 ACTTAGTCAAAACTTACAAAGCTTGAC 58.818 33.333 18.45 18.45 45.61 3.18
303 306 8.276252 ACTTAGTCAAAACTTACAAAGCTTGA 57.724 30.769 0.00 0.00 36.92 3.02
304 307 8.911247 AACTTAGTCAAAACTTACAAAGCTTG 57.089 30.769 0.00 0.00 36.92 4.01
390 397 9.836864 AGCAAATCTATATGATGTGAAAGTACA 57.163 29.630 0.00 0.00 41.79 2.90
446 453 4.535526 ACTTTGCAAAGTTTGACCAACT 57.464 36.364 33.85 11.76 46.52 3.16
455 462 6.128842 GACCGAAGTCAAACTTTGCAAAGTT 61.129 40.000 39.24 39.24 45.31 2.66
456 463 4.674362 GACCGAAGTCAAACTTTGCAAAGT 60.674 41.667 33.85 33.85 45.47 2.66
457 464 3.769536 ACCGAAGTCAAACTTTGCAAAG 58.230 40.909 32.53 32.53 38.80 2.77
458 465 3.765026 GACCGAAGTCAAACTTTGCAAA 58.235 40.909 12.14 12.14 38.80 3.68
459 466 3.414549 GACCGAAGTCAAACTTTGCAA 57.585 42.857 0.00 0.00 38.80 4.08
470 477 4.873827 TGCATATTAGGTTTGACCGAAGTC 59.126 41.667 0.00 0.00 44.90 3.01
471 478 4.839121 TGCATATTAGGTTTGACCGAAGT 58.161 39.130 0.00 0.00 44.90 3.01
472 479 5.006746 GTCTGCATATTAGGTTTGACCGAAG 59.993 44.000 0.00 0.00 44.90 3.79
473 480 4.873827 GTCTGCATATTAGGTTTGACCGAA 59.126 41.667 0.00 0.00 44.90 4.30
474 481 4.161565 AGTCTGCATATTAGGTTTGACCGA 59.838 41.667 0.00 0.00 44.90 4.69
475 482 4.442706 AGTCTGCATATTAGGTTTGACCG 58.557 43.478 0.00 0.00 44.90 4.79
476 483 7.859325 TTTAGTCTGCATATTAGGTTTGACC 57.141 36.000 0.00 0.00 38.99 4.02
487 494 9.125026 CCCTCTGTTTTTATTTAGTCTGCATAT 57.875 33.333 0.00 0.00 0.00 1.78
488 495 8.325787 TCCCTCTGTTTTTATTTAGTCTGCATA 58.674 33.333 0.00 0.00 0.00 3.14
489 496 7.175104 TCCCTCTGTTTTTATTTAGTCTGCAT 58.825 34.615 0.00 0.00 0.00 3.96
490 497 6.539173 TCCCTCTGTTTTTATTTAGTCTGCA 58.461 36.000 0.00 0.00 0.00 4.41
491 498 6.655425 ACTCCCTCTGTTTTTATTTAGTCTGC 59.345 38.462 0.00 0.00 0.00 4.26
492 499 9.152595 GTACTCCCTCTGTTTTTATTTAGTCTG 57.847 37.037 0.00 0.00 0.00 3.51
493 500 9.102453 AGTACTCCCTCTGTTTTTATTTAGTCT 57.898 33.333 0.00 0.00 0.00 3.24
500 507 9.462606 CCAAAATAGTACTCCCTCTGTTTTTAT 57.537 33.333 0.00 0.00 34.51 1.40
501 508 7.886446 CCCAAAATAGTACTCCCTCTGTTTTTA 59.114 37.037 0.00 0.00 34.51 1.52
502 509 6.719829 CCCAAAATAGTACTCCCTCTGTTTTT 59.280 38.462 0.00 0.00 34.51 1.94
503 510 6.183361 ACCCAAAATAGTACTCCCTCTGTTTT 60.183 38.462 0.00 0.00 36.15 2.43
504 511 5.312443 ACCCAAAATAGTACTCCCTCTGTTT 59.688 40.000 0.00 0.00 0.00 2.83
505 512 4.850386 ACCCAAAATAGTACTCCCTCTGTT 59.150 41.667 0.00 0.00 0.00 3.16
506 513 4.225267 CACCCAAAATAGTACTCCCTCTGT 59.775 45.833 0.00 0.00 0.00 3.41
507 514 4.469945 TCACCCAAAATAGTACTCCCTCTG 59.530 45.833 0.00 0.00 0.00 3.35
508 515 4.695606 TCACCCAAAATAGTACTCCCTCT 58.304 43.478 0.00 0.00 0.00 3.69
509 516 5.130477 TGATCACCCAAAATAGTACTCCCTC 59.870 44.000 0.00 0.00 0.00 4.30
510 517 5.036916 TGATCACCCAAAATAGTACTCCCT 58.963 41.667 0.00 0.00 0.00 4.20
511 518 5.104485 AGTGATCACCCAAAATAGTACTCCC 60.104 44.000 22.21 0.00 0.00 4.30
512 519 5.817816 CAGTGATCACCCAAAATAGTACTCC 59.182 44.000 22.21 0.00 0.00 3.85
513 520 5.817816 CCAGTGATCACCCAAAATAGTACTC 59.182 44.000 22.21 0.00 0.00 2.59
514 521 5.487488 TCCAGTGATCACCCAAAATAGTACT 59.513 40.000 22.21 0.00 0.00 2.73
583 591 9.300681 TCTTTTGTCATCTTGAAGATACCAATT 57.699 29.630 7.46 0.00 32.12 2.32
584 592 8.868522 TCTTTTGTCATCTTGAAGATACCAAT 57.131 30.769 7.46 0.00 32.12 3.16
585 593 8.733458 CATCTTTTGTCATCTTGAAGATACCAA 58.267 33.333 7.46 10.34 35.82 3.67
586 594 7.884877 ACATCTTTTGTCATCTTGAAGATACCA 59.115 33.333 7.46 4.75 35.82 3.25
629 639 8.267183 GGAAAGTCATGGAAATTAAATGGGATT 58.733 33.333 0.00 0.00 0.00 3.01
630 640 7.624879 AGGAAAGTCATGGAAATTAAATGGGAT 59.375 33.333 0.00 0.00 0.00 3.85
631 641 6.959366 AGGAAAGTCATGGAAATTAAATGGGA 59.041 34.615 0.00 0.00 0.00 4.37
632 642 7.186570 AGGAAAGTCATGGAAATTAAATGGG 57.813 36.000 0.00 0.00 0.00 4.00
633 643 7.550196 CCAAGGAAAGTCATGGAAATTAAATGG 59.450 37.037 0.00 0.00 34.82 3.16
637 647 7.847711 TTCCAAGGAAAGTCATGGAAATTAA 57.152 32.000 10.58 0.00 46.12 1.40
655 665 1.530293 GCTATCGCATCAGCTTCCAAG 59.470 52.381 0.00 0.00 39.10 3.61
684 881 5.047802 GGGTAGAATATATTCGGACGTTGGA 60.048 44.000 17.69 0.00 41.56 3.53
728 927 7.285401 GGCCACTCCATAAATAAAAATGAGAGA 59.715 37.037 0.00 0.00 34.01 3.10
729 928 7.068593 TGGCCACTCCATAAATAAAAATGAGAG 59.931 37.037 0.00 0.00 40.72 3.20
763 969 4.860907 CAGTTTGTTTAGAATGGCTGCATC 59.139 41.667 0.50 0.00 0.00 3.91
784 990 4.515361 AGGCATCAATCTTCTGTTCTCAG 58.485 43.478 0.00 0.00 42.54 3.35
882 1254 7.209471 AGCAAATATAAACTTTGGTCAACGA 57.791 32.000 0.00 0.00 39.41 3.85
906 1294 6.490040 GCAGAAAGCACAATTTATAGGGGATA 59.510 38.462 0.00 0.00 44.79 2.59
985 1387 0.948141 GCCATCGCAGTAGAGGATGC 60.948 60.000 0.00 0.00 36.97 3.91
987 1389 1.418334 AAGCCATCGCAGTAGAGGAT 58.582 50.000 0.00 0.00 37.52 3.24
988 1390 1.195115 AAAGCCATCGCAGTAGAGGA 58.805 50.000 0.00 0.00 37.52 3.71
993 1399 1.468520 GAAGCAAAAGCCATCGCAGTA 59.531 47.619 0.00 0.00 37.52 2.74
1345 1751 3.781307 CGGAGGTTCCATGGCGGA 61.781 66.667 6.96 0.00 44.40 5.54
1482 1894 2.202932 GGATCGTGGCTGATGCGT 60.203 61.111 0.00 0.00 40.82 5.24
2050 2485 3.776417 CAAAATCCCCAATTGATCCACCT 59.224 43.478 7.12 0.00 0.00 4.00
2085 2520 3.260380 CAGTGACTCAGAAACCCTCTCAT 59.740 47.826 0.00 0.00 29.07 2.90
2165 2600 4.271661 TCAAAGGTTGATCAGCATGCATA 58.728 39.130 21.98 7.54 34.08 3.14
2186 2681 5.448438 TCATCAACTACAAATGTTGCGTTC 58.552 37.500 0.00 0.00 43.00 3.95
2193 2688 6.233434 TCTTGAGCTCATCAACTACAAATGT 58.767 36.000 19.04 0.00 43.09 2.71
2195 2690 7.226325 GCTATCTTGAGCTCATCAACTACAAAT 59.774 37.037 19.04 0.00 43.09 2.32
2204 2699 2.034878 ACCGCTATCTTGAGCTCATCA 58.965 47.619 19.04 7.46 40.51 3.07
2219 2714 2.939261 CGTGTGGACCCTAACCGCT 61.939 63.158 0.00 0.00 38.55 5.52
2285 2787 1.383523 GCATAAGCTTCCTGACCACC 58.616 55.000 0.00 0.00 37.91 4.61
2310 2812 2.764314 CCGCTTCAATTCCGGCCTG 61.764 63.158 0.00 0.00 35.14 4.85
2353 2855 0.039978 CACGGACTCCATAGCTAGCG 60.040 60.000 9.55 0.00 0.00 4.26
2568 3085 5.633830 TTTTCATCCAAGACATGAGAAGC 57.366 39.130 0.00 0.00 31.84 3.86
2601 3119 3.526899 TCTGTTTTGGGGACTATCCTGA 58.473 45.455 0.00 0.00 36.57 3.86
2602 3120 4.301072 TTCTGTTTTGGGGACTATCCTG 57.699 45.455 0.00 0.00 36.57 3.86
2603 3121 5.536497 AATTCTGTTTTGGGGACTATCCT 57.464 39.130 0.00 0.00 36.57 3.24
2604 3122 7.712204 TTTAATTCTGTTTTGGGGACTATCC 57.288 36.000 0.00 0.00 35.23 2.59
2605 3123 8.197439 CCATTTAATTCTGTTTTGGGGACTATC 58.803 37.037 0.00 0.00 0.00 2.08
2606 3124 7.678171 ACCATTTAATTCTGTTTTGGGGACTAT 59.322 33.333 0.00 0.00 0.00 2.12
2607 3125 7.013834 ACCATTTAATTCTGTTTTGGGGACTA 58.986 34.615 0.00 0.00 0.00 2.59
2608 3126 5.843969 ACCATTTAATTCTGTTTTGGGGACT 59.156 36.000 0.00 0.00 0.00 3.85
2609 3127 6.109156 ACCATTTAATTCTGTTTTGGGGAC 57.891 37.500 0.00 0.00 0.00 4.46
2610 3128 5.247337 GGACCATTTAATTCTGTTTTGGGGA 59.753 40.000 0.00 0.00 0.00 4.81
2611 3129 5.487433 GGACCATTTAATTCTGTTTTGGGG 58.513 41.667 0.00 0.00 0.00 4.96
2612 3130 5.012561 TGGGACCATTTAATTCTGTTTTGGG 59.987 40.000 0.00 0.00 0.00 4.12
2613 3131 6.107901 TGGGACCATTTAATTCTGTTTTGG 57.892 37.500 0.00 0.00 0.00 3.28
2614 3132 8.620116 ATTTGGGACCATTTAATTCTGTTTTG 57.380 30.769 0.00 0.00 0.00 2.44
2644 3162 8.314021 GGTCTTGGGAAACTTTCAATTTCATAT 58.686 33.333 3.93 0.00 37.72 1.78
2645 3163 7.288852 TGGTCTTGGGAAACTTTCAATTTCATA 59.711 33.333 3.93 0.00 37.72 2.15
2646 3164 6.099557 TGGTCTTGGGAAACTTTCAATTTCAT 59.900 34.615 3.93 0.00 37.72 2.57
2647 3165 5.423610 TGGTCTTGGGAAACTTTCAATTTCA 59.576 36.000 3.93 0.00 37.72 2.69
2648 3166 5.912892 TGGTCTTGGGAAACTTTCAATTTC 58.087 37.500 3.93 0.00 35.67 2.17
2649 3167 5.948742 TGGTCTTGGGAAACTTTCAATTT 57.051 34.783 3.93 0.00 0.00 1.82
2650 3168 5.948742 TTGGTCTTGGGAAACTTTCAATT 57.051 34.783 3.93 0.00 0.00 2.32
2651 3169 5.425217 AGTTTGGTCTTGGGAAACTTTCAAT 59.575 36.000 3.93 0.00 36.71 2.57
2652 3170 4.775253 AGTTTGGTCTTGGGAAACTTTCAA 59.225 37.500 3.93 0.00 36.71 2.69
2653 3171 4.159506 CAGTTTGGTCTTGGGAAACTTTCA 59.840 41.667 3.93 0.00 37.74 2.69
2654 3172 4.441495 CCAGTTTGGTCTTGGGAAACTTTC 60.441 45.833 0.00 0.00 37.74 2.62
2655 3173 3.450817 CCAGTTTGGTCTTGGGAAACTTT 59.549 43.478 0.00 0.00 37.74 2.66
2656 3174 3.031013 CCAGTTTGGTCTTGGGAAACTT 58.969 45.455 0.00 0.00 37.74 2.66
2657 3175 2.666317 CCAGTTTGGTCTTGGGAAACT 58.334 47.619 0.00 0.00 39.88 2.66
2658 3176 1.686587 CCCAGTTTGGTCTTGGGAAAC 59.313 52.381 2.59 0.00 42.21 2.78
2659 3177 1.289530 ACCCAGTTTGGTCTTGGGAAA 59.710 47.619 15.29 0.00 42.21 3.13
2660 3178 0.930726 ACCCAGTTTGGTCTTGGGAA 59.069 50.000 15.29 0.00 42.21 3.97
2661 3179 1.702957 CTACCCAGTTTGGTCTTGGGA 59.297 52.381 15.29 0.00 42.21 4.37
2662 3180 1.702957 TCTACCCAGTTTGGTCTTGGG 59.297 52.381 7.22 7.22 44.99 4.12
2663 3181 2.637872 TCTCTACCCAGTTTGGTCTTGG 59.362 50.000 0.00 0.00 39.91 3.61
2664 3182 4.351874 TTCTCTACCCAGTTTGGTCTTG 57.648 45.455 0.00 0.00 39.91 3.02
2665 3183 5.584551 ATTTCTCTACCCAGTTTGGTCTT 57.415 39.130 0.00 0.00 39.91 3.01
2666 3184 6.473758 GTTATTTCTCTACCCAGTTTGGTCT 58.526 40.000 0.00 0.00 39.91 3.85
2667 3185 5.646793 GGTTATTTCTCTACCCAGTTTGGTC 59.353 44.000 0.00 0.00 39.91 4.02
2668 3186 5.073965 TGGTTATTTCTCTACCCAGTTTGGT 59.926 40.000 0.00 0.00 42.62 3.67
2669 3187 5.566469 TGGTTATTTCTCTACCCAGTTTGG 58.434 41.667 0.00 0.00 37.25 3.28
2670 3188 7.611855 AGATTGGTTATTTCTCTACCCAGTTTG 59.388 37.037 0.00 0.00 0.00 2.93
2671 3189 7.699878 AGATTGGTTATTTCTCTACCCAGTTT 58.300 34.615 0.00 0.00 0.00 2.66
2672 3190 7.272144 AGATTGGTTATTTCTCTACCCAGTT 57.728 36.000 0.00 0.00 0.00 3.16
2673 3191 6.893020 AGATTGGTTATTTCTCTACCCAGT 57.107 37.500 0.00 0.00 0.00 4.00
2674 3192 7.934120 CCTAAGATTGGTTATTTCTCTACCCAG 59.066 40.741 0.00 0.00 0.00 4.45
2675 3193 7.147373 CCCTAAGATTGGTTATTTCTCTACCCA 60.147 40.741 0.00 0.00 0.00 4.51
2676 3194 7.225011 CCCTAAGATTGGTTATTTCTCTACCC 58.775 42.308 0.00 0.00 0.00 3.69
2677 3195 6.711194 GCCCTAAGATTGGTTATTTCTCTACC 59.289 42.308 0.00 0.00 0.00 3.18
2678 3196 6.711194 GGCCCTAAGATTGGTTATTTCTCTAC 59.289 42.308 0.00 0.00 0.00 2.59
2679 3197 6.388689 TGGCCCTAAGATTGGTTATTTCTCTA 59.611 38.462 0.00 0.00 0.00 2.43
2680 3198 5.193728 TGGCCCTAAGATTGGTTATTTCTCT 59.806 40.000 0.00 0.00 0.00 3.10
2681 3199 5.445964 TGGCCCTAAGATTGGTTATTTCTC 58.554 41.667 0.00 0.00 0.00 2.87
2682 3200 5.044105 ACTGGCCCTAAGATTGGTTATTTCT 60.044 40.000 0.00 0.00 0.00 2.52
2683 3201 5.201243 ACTGGCCCTAAGATTGGTTATTTC 58.799 41.667 0.00 0.00 0.00 2.17
2684 3202 5.206905 ACTGGCCCTAAGATTGGTTATTT 57.793 39.130 0.00 0.00 0.00 1.40
2685 3203 4.881157 ACTGGCCCTAAGATTGGTTATT 57.119 40.909 0.00 0.00 0.00 1.40
2686 3204 4.478686 AGAACTGGCCCTAAGATTGGTTAT 59.521 41.667 0.00 0.00 0.00 1.89
2687 3205 3.850173 AGAACTGGCCCTAAGATTGGTTA 59.150 43.478 0.00 0.00 0.00 2.85
2688 3206 2.649816 AGAACTGGCCCTAAGATTGGTT 59.350 45.455 0.00 0.00 0.00 3.67
2689 3207 2.279173 AGAACTGGCCCTAAGATTGGT 58.721 47.619 0.00 0.00 0.00 3.67
2690 3208 3.372440 AAGAACTGGCCCTAAGATTGG 57.628 47.619 0.00 0.00 0.00 3.16
2691 3209 4.766891 TCAAAAGAACTGGCCCTAAGATTG 59.233 41.667 0.00 0.00 0.00 2.67
2692 3210 4.767409 GTCAAAAGAACTGGCCCTAAGATT 59.233 41.667 0.00 0.00 0.00 2.40
2693 3211 4.336280 GTCAAAAGAACTGGCCCTAAGAT 58.664 43.478 0.00 0.00 0.00 2.40
2694 3212 3.751518 GTCAAAAGAACTGGCCCTAAGA 58.248 45.455 0.00 0.00 0.00 2.10
2695 3213 2.484264 CGTCAAAAGAACTGGCCCTAAG 59.516 50.000 0.00 0.00 0.00 2.18
2696 3214 2.500229 CGTCAAAAGAACTGGCCCTAA 58.500 47.619 0.00 0.00 0.00 2.69
2697 3215 1.271163 CCGTCAAAAGAACTGGCCCTA 60.271 52.381 0.00 0.00 0.00 3.53
2698 3216 0.537371 CCGTCAAAAGAACTGGCCCT 60.537 55.000 0.00 0.00 0.00 5.19
2699 3217 0.822121 ACCGTCAAAAGAACTGGCCC 60.822 55.000 0.00 0.00 0.00 5.80
2700 3218 1.029681 AACCGTCAAAAGAACTGGCC 58.970 50.000 0.00 0.00 0.00 5.36
2701 3219 2.863401 AAACCGTCAAAAGAACTGGC 57.137 45.000 0.00 0.00 0.00 4.85
2722 3240 1.685180 GGGAGGAGGCGGCTTATTTTT 60.685 52.381 14.76 0.00 0.00 1.94
2723 3241 0.106669 GGGAGGAGGCGGCTTATTTT 60.107 55.000 14.76 0.00 0.00 1.82
2724 3242 1.532238 GGGAGGAGGCGGCTTATTT 59.468 57.895 14.76 0.00 0.00 1.40
2725 3243 2.452937 GGGGAGGAGGCGGCTTATT 61.453 63.158 14.76 1.09 0.00 1.40
2726 3244 2.849646 GGGGAGGAGGCGGCTTAT 60.850 66.667 14.76 4.47 0.00 1.73
2727 3245 3.935456 TTGGGGAGGAGGCGGCTTA 62.935 63.158 14.76 0.00 0.00 3.09
2731 3249 2.499303 AAATGTTGGGGAGGAGGCGG 62.499 60.000 0.00 0.00 0.00 6.13
2732 3250 0.611896 AAAATGTTGGGGAGGAGGCG 60.612 55.000 0.00 0.00 0.00 5.52
2733 3251 1.550524 GAAAAATGTTGGGGAGGAGGC 59.449 52.381 0.00 0.00 0.00 4.70
2734 3252 2.888212 TGAAAAATGTTGGGGAGGAGG 58.112 47.619 0.00 0.00 0.00 4.30
2735 3253 5.394553 GCTTATGAAAAATGTTGGGGAGGAG 60.395 44.000 0.00 0.00 0.00 3.69
2736 3254 4.466015 GCTTATGAAAAATGTTGGGGAGGA 59.534 41.667 0.00 0.00 0.00 3.71
2737 3255 4.467438 AGCTTATGAAAAATGTTGGGGAGG 59.533 41.667 0.00 0.00 0.00 4.30
2738 3256 5.047092 ACAGCTTATGAAAAATGTTGGGGAG 60.047 40.000 0.00 0.00 0.00 4.30
2739 3257 4.837860 ACAGCTTATGAAAAATGTTGGGGA 59.162 37.500 0.00 0.00 0.00 4.81
2740 3258 5.047092 AGACAGCTTATGAAAAATGTTGGGG 60.047 40.000 0.00 0.00 0.00 4.96
2741 3259 6.029346 AGACAGCTTATGAAAAATGTTGGG 57.971 37.500 0.00 0.00 0.00 4.12
2742 3260 6.095377 GGAGACAGCTTATGAAAAATGTTGG 58.905 40.000 0.00 0.00 0.00 3.77
2743 3261 6.071728 AGGGAGACAGCTTATGAAAAATGTTG 60.072 38.462 0.00 0.00 0.00 3.33
2744 3262 6.012745 AGGGAGACAGCTTATGAAAAATGTT 58.987 36.000 0.00 0.00 0.00 2.71
2745 3263 5.574188 AGGGAGACAGCTTATGAAAAATGT 58.426 37.500 0.00 0.00 0.00 2.71
2746 3264 5.649395 TGAGGGAGACAGCTTATGAAAAATG 59.351 40.000 0.00 0.00 0.00 2.32
2747 3265 5.819991 TGAGGGAGACAGCTTATGAAAAAT 58.180 37.500 0.00 0.00 0.00 1.82
2748 3266 5.241403 TGAGGGAGACAGCTTATGAAAAA 57.759 39.130 0.00 0.00 0.00 1.94
2749 3267 4.908601 TGAGGGAGACAGCTTATGAAAA 57.091 40.909 0.00 0.00 0.00 2.29
2750 3268 5.045651 TGAATGAGGGAGACAGCTTATGAAA 60.046 40.000 0.00 0.00 0.00 2.69
2751 3269 4.471025 TGAATGAGGGAGACAGCTTATGAA 59.529 41.667 0.00 0.00 0.00 2.57
2752 3270 4.033009 TGAATGAGGGAGACAGCTTATGA 58.967 43.478 0.00 0.00 0.00 2.15
2753 3271 4.412796 TGAATGAGGGAGACAGCTTATG 57.587 45.455 0.00 0.00 0.00 1.90
2754 3272 5.374921 CAATGAATGAGGGAGACAGCTTAT 58.625 41.667 0.00 0.00 0.00 1.73
2755 3273 4.384537 CCAATGAATGAGGGAGACAGCTTA 60.385 45.833 0.00 0.00 0.00 3.09
2756 3274 3.618351 CAATGAATGAGGGAGACAGCTT 58.382 45.455 0.00 0.00 0.00 3.74
2757 3275 2.092538 CCAATGAATGAGGGAGACAGCT 60.093 50.000 0.00 0.00 0.00 4.24
2758 3276 2.295885 CCAATGAATGAGGGAGACAGC 58.704 52.381 0.00 0.00 0.00 4.40
2759 3277 2.422519 CCCCAATGAATGAGGGAGACAG 60.423 54.545 0.00 0.00 45.80 3.51
2760 3278 1.565759 CCCCAATGAATGAGGGAGACA 59.434 52.381 0.00 0.00 45.80 3.41
2761 3279 1.752084 GCCCCAATGAATGAGGGAGAC 60.752 57.143 0.00 0.00 45.80 3.36
2762 3280 0.552848 GCCCCAATGAATGAGGGAGA 59.447 55.000 0.00 0.00 45.80 3.71
2763 3281 0.554792 AGCCCCAATGAATGAGGGAG 59.445 55.000 0.00 0.00 45.80 4.30
2764 3282 1.009997 AAGCCCCAATGAATGAGGGA 58.990 50.000 0.00 0.00 45.80 4.20
2765 3283 1.063417 AGAAGCCCCAATGAATGAGGG 60.063 52.381 0.00 0.00 40.59 4.30
2766 3284 2.029623 CAGAAGCCCCAATGAATGAGG 58.970 52.381 0.00 0.00 0.00 3.86
2767 3285 3.008835 TCAGAAGCCCCAATGAATGAG 57.991 47.619 0.00 0.00 0.00 2.90
2768 3286 3.091545 GTTCAGAAGCCCCAATGAATGA 58.908 45.455 0.00 0.00 34.45 2.57
2769 3287 3.094572 AGTTCAGAAGCCCCAATGAATG 58.905 45.455 0.00 0.00 34.45 2.67
2770 3288 3.463048 AGTTCAGAAGCCCCAATGAAT 57.537 42.857 0.00 0.00 34.45 2.57
2771 3289 2.978156 AGTTCAGAAGCCCCAATGAA 57.022 45.000 0.00 0.00 0.00 2.57
2772 3290 2.912956 ACTAGTTCAGAAGCCCCAATGA 59.087 45.455 0.00 0.00 0.00 2.57
2773 3291 3.356529 ACTAGTTCAGAAGCCCCAATG 57.643 47.619 0.00 0.00 0.00 2.82
2774 3292 5.440610 CATAACTAGTTCAGAAGCCCCAAT 58.559 41.667 12.39 0.00 0.00 3.16
2775 3293 4.324254 CCATAACTAGTTCAGAAGCCCCAA 60.324 45.833 12.39 0.00 0.00 4.12
2776 3294 3.199946 CCATAACTAGTTCAGAAGCCCCA 59.800 47.826 12.39 0.00 0.00 4.96
2777 3295 3.433740 CCCATAACTAGTTCAGAAGCCCC 60.434 52.174 12.39 0.00 0.00 5.80
2778 3296 3.454812 TCCCATAACTAGTTCAGAAGCCC 59.545 47.826 12.39 0.00 0.00 5.19
2779 3297 4.755266 TCCCATAACTAGTTCAGAAGCC 57.245 45.455 12.39 0.00 0.00 4.35
2780 3298 7.716768 GTTATCCCATAACTAGTTCAGAAGC 57.283 40.000 12.39 0.00 41.40 3.86
2792 3310 9.768662 TTTCTTCCGTATTAGTTATCCCATAAC 57.231 33.333 0.00 0.00 44.18 1.89
2793 3311 9.991906 CTTTCTTCCGTATTAGTTATCCCATAA 57.008 33.333 0.00 0.00 0.00 1.90
2794 3312 9.370930 TCTTTCTTCCGTATTAGTTATCCCATA 57.629 33.333 0.00 0.00 0.00 2.74
2795 3313 8.258850 TCTTTCTTCCGTATTAGTTATCCCAT 57.741 34.615 0.00 0.00 0.00 4.00
2796 3314 7.664552 TCTTTCTTCCGTATTAGTTATCCCA 57.335 36.000 0.00 0.00 0.00 4.37
2797 3315 9.557061 AATTCTTTCTTCCGTATTAGTTATCCC 57.443 33.333 0.00 0.00 0.00 3.85
2799 3317 9.865484 GCAATTCTTTCTTCCGTATTAGTTATC 57.135 33.333 0.00 0.00 0.00 1.75
2800 3318 9.391006 TGCAATTCTTTCTTCCGTATTAGTTAT 57.609 29.630 0.00 0.00 0.00 1.89
2801 3319 8.662141 GTGCAATTCTTTCTTCCGTATTAGTTA 58.338 33.333 0.00 0.00 0.00 2.24
2802 3320 7.390718 AGTGCAATTCTTTCTTCCGTATTAGTT 59.609 33.333 0.00 0.00 0.00 2.24
2803 3321 6.879458 AGTGCAATTCTTTCTTCCGTATTAGT 59.121 34.615 0.00 0.00 0.00 2.24
2804 3322 7.308782 AGTGCAATTCTTTCTTCCGTATTAG 57.691 36.000 0.00 0.00 0.00 1.73
2805 3323 6.315393 GGAGTGCAATTCTTTCTTCCGTATTA 59.685 38.462 0.00 0.00 0.00 0.98
2806 3324 5.123979 GGAGTGCAATTCTTTCTTCCGTATT 59.876 40.000 0.00 0.00 0.00 1.89
2807 3325 4.636206 GGAGTGCAATTCTTTCTTCCGTAT 59.364 41.667 0.00 0.00 0.00 3.06
2808 3326 4.000988 GGAGTGCAATTCTTTCTTCCGTA 58.999 43.478 0.00 0.00 0.00 4.02
2809 3327 2.814336 GGAGTGCAATTCTTTCTTCCGT 59.186 45.455 0.00 0.00 0.00 4.69
2810 3328 2.159653 CGGAGTGCAATTCTTTCTTCCG 60.160 50.000 0.00 0.00 0.00 4.30
2811 3329 2.162408 CCGGAGTGCAATTCTTTCTTCC 59.838 50.000 0.00 0.00 0.00 3.46
2812 3330 3.074412 TCCGGAGTGCAATTCTTTCTTC 58.926 45.455 0.00 0.00 0.00 2.87
2813 3331 3.140325 TCCGGAGTGCAATTCTTTCTT 57.860 42.857 0.00 0.00 0.00 2.52
2814 3332 2.859165 TCCGGAGTGCAATTCTTTCT 57.141 45.000 0.00 0.00 0.00 2.52
2815 3333 3.002759 GCTATCCGGAGTGCAATTCTTTC 59.997 47.826 21.83 0.00 0.00 2.62
2816 3334 2.945668 GCTATCCGGAGTGCAATTCTTT 59.054 45.455 21.83 0.00 0.00 2.52
2817 3335 2.092968 TGCTATCCGGAGTGCAATTCTT 60.093 45.455 25.58 2.13 32.12 2.52
2818 3336 1.486310 TGCTATCCGGAGTGCAATTCT 59.514 47.619 25.58 2.85 32.12 2.40
2819 3337 1.953559 TGCTATCCGGAGTGCAATTC 58.046 50.000 25.58 4.47 32.12 2.17
2820 3338 2.092968 TCTTGCTATCCGGAGTGCAATT 60.093 45.455 32.73 11.27 40.35 2.32
2821 3339 1.486310 TCTTGCTATCCGGAGTGCAAT 59.514 47.619 32.73 11.94 40.35 3.56
2822 3340 0.901827 TCTTGCTATCCGGAGTGCAA 59.098 50.000 31.42 31.42 40.35 4.08
2823 3341 1.123077 ATCTTGCTATCCGGAGTGCA 58.877 50.000 24.48 24.48 0.00 4.57
2824 3342 1.069204 TCATCTTGCTATCCGGAGTGC 59.931 52.381 20.49 20.49 0.00 4.40
2825 3343 3.006217 TCATCATCTTGCTATCCGGAGTG 59.994 47.826 11.34 6.18 0.00 3.51
2826 3344 3.234353 TCATCATCTTGCTATCCGGAGT 58.766 45.455 11.34 0.48 0.00 3.85
2827 3345 3.949842 TCATCATCTTGCTATCCGGAG 57.050 47.619 11.34 0.00 0.00 4.63
2828 3346 4.635223 CTTTCATCATCTTGCTATCCGGA 58.365 43.478 6.61 6.61 0.00 5.14
2829 3347 3.188048 GCTTTCATCATCTTGCTATCCGG 59.812 47.826 0.00 0.00 0.00 5.14
2830 3348 4.063689 AGCTTTCATCATCTTGCTATCCG 58.936 43.478 0.00 0.00 0.00 4.18
2831 3349 5.530171 TCAAGCTTTCATCATCTTGCTATCC 59.470 40.000 0.00 0.00 36.71 2.59
2832 3350 6.260493 ACTCAAGCTTTCATCATCTTGCTATC 59.740 38.462 0.00 0.00 36.71 2.08
2833 3351 6.120905 ACTCAAGCTTTCATCATCTTGCTAT 58.879 36.000 0.00 0.00 36.71 2.97
2834 3352 5.494724 ACTCAAGCTTTCATCATCTTGCTA 58.505 37.500 0.00 0.00 36.71 3.49
2835 3353 4.333690 ACTCAAGCTTTCATCATCTTGCT 58.666 39.130 0.00 0.00 36.71 3.91
2836 3354 4.698583 ACTCAAGCTTTCATCATCTTGC 57.301 40.909 0.00 0.00 36.71 4.01
2837 3355 6.910995 AGAAACTCAAGCTTTCATCATCTTG 58.089 36.000 0.00 0.00 37.76 3.02
2838 3356 7.521871 AAGAAACTCAAGCTTTCATCATCTT 57.478 32.000 0.00 0.33 31.12 2.40
2839 3357 8.099537 TCTAAGAAACTCAAGCTTTCATCATCT 58.900 33.333 0.00 0.00 31.12 2.90
2840 3358 8.261492 TCTAAGAAACTCAAGCTTTCATCATC 57.739 34.615 0.00 0.00 31.12 2.92
2841 3359 8.627208 TTCTAAGAAACTCAAGCTTTCATCAT 57.373 30.769 0.00 0.00 31.12 2.45
2842 3360 8.450578 TTTCTAAGAAACTCAAGCTTTCATCA 57.549 30.769 0.00 0.00 31.12 3.07
2843 3361 9.392021 CTTTTCTAAGAAACTCAAGCTTTCATC 57.608 33.333 0.00 0.00 32.92 2.92
2844 3362 9.125026 TCTTTTCTAAGAAACTCAAGCTTTCAT 57.875 29.630 0.00 0.00 37.45 2.57
2845 3363 8.506168 TCTTTTCTAAGAAACTCAAGCTTTCA 57.494 30.769 0.00 0.00 37.45 2.69
2859 3377 8.307483 AGTGTTCATCGAGATTCTTTTCTAAGA 58.693 33.333 0.00 0.00 38.61 2.10
2860 3378 8.472683 AGTGTTCATCGAGATTCTTTTCTAAG 57.527 34.615 0.00 0.00 0.00 2.18
2861 3379 8.833231 AAGTGTTCATCGAGATTCTTTTCTAA 57.167 30.769 0.00 0.00 0.00 2.10
2862 3380 8.712363 CAAAGTGTTCATCGAGATTCTTTTCTA 58.288 33.333 0.00 0.00 0.00 2.10
2863 3381 7.442364 TCAAAGTGTTCATCGAGATTCTTTTCT 59.558 33.333 0.00 0.00 0.00 2.52
2864 3382 7.576236 TCAAAGTGTTCATCGAGATTCTTTTC 58.424 34.615 0.00 0.00 0.00 2.29
2865 3383 7.442364 TCTCAAAGTGTTCATCGAGATTCTTTT 59.558 33.333 0.00 0.00 0.00 2.27
2866 3384 6.931281 TCTCAAAGTGTTCATCGAGATTCTTT 59.069 34.615 0.00 0.00 0.00 2.52
2867 3385 6.459066 TCTCAAAGTGTTCATCGAGATTCTT 58.541 36.000 0.00 0.00 0.00 2.52
2868 3386 6.030548 TCTCAAAGTGTTCATCGAGATTCT 57.969 37.500 0.00 0.00 0.00 2.40
2869 3387 6.712241 TTCTCAAAGTGTTCATCGAGATTC 57.288 37.500 0.00 0.00 30.16 2.52
2870 3388 6.875726 TCATTCTCAAAGTGTTCATCGAGATT 59.124 34.615 0.00 0.00 30.16 2.40
2871 3389 6.401394 TCATTCTCAAAGTGTTCATCGAGAT 58.599 36.000 0.00 0.00 30.16 2.75
2872 3390 5.783111 TCATTCTCAAAGTGTTCATCGAGA 58.217 37.500 0.00 0.00 0.00 4.04
2873 3391 6.471976 TTCATTCTCAAAGTGTTCATCGAG 57.528 37.500 0.00 0.00 0.00 4.04
2874 3392 7.439157 AATTCATTCTCAAAGTGTTCATCGA 57.561 32.000 0.00 0.00 0.00 3.59
2875 3393 9.778993 ATTAATTCATTCTCAAAGTGTTCATCG 57.221 29.630 0.00 0.00 0.00 3.84
2878 3396 9.912634 GGAATTAATTCATTCTCAAAGTGTTCA 57.087 29.630 25.55 0.00 38.53 3.18
2881 3399 9.918630 CAAGGAATTAATTCATTCTCAAAGTGT 57.081 29.630 25.55 1.29 38.56 3.55
2891 3409 9.657419 GGTGTTTCATCAAGGAATTAATTCATT 57.343 29.630 25.55 22.62 40.93 2.57
2892 3410 8.814931 TGGTGTTTCATCAAGGAATTAATTCAT 58.185 29.630 25.55 18.39 38.53 2.57
2893 3411 8.187913 TGGTGTTTCATCAAGGAATTAATTCA 57.812 30.769 25.55 9.06 38.53 2.57
2894 3412 9.090692 CATGGTGTTTCATCAAGGAATTAATTC 57.909 33.333 18.22 18.22 36.08 2.17
2895 3413 8.596293 ACATGGTGTTTCATCAAGGAATTAATT 58.404 29.630 0.00 0.00 0.00 1.40
2896 3414 8.137745 ACATGGTGTTTCATCAAGGAATTAAT 57.862 30.769 0.00 0.00 0.00 1.40
2897 3415 7.537596 ACATGGTGTTTCATCAAGGAATTAA 57.462 32.000 0.00 0.00 0.00 1.40
2898 3416 6.128035 CGACATGGTGTTTCATCAAGGAATTA 60.128 38.462 0.00 0.00 0.00 1.40
2899 3417 5.335897 CGACATGGTGTTTCATCAAGGAATT 60.336 40.000 0.00 0.00 0.00 2.17
2900 3418 4.156556 CGACATGGTGTTTCATCAAGGAAT 59.843 41.667 0.00 0.00 0.00 3.01
2901 3419 3.501828 CGACATGGTGTTTCATCAAGGAA 59.498 43.478 0.00 0.00 0.00 3.36
2902 3420 3.073678 CGACATGGTGTTTCATCAAGGA 58.926 45.455 0.00 0.00 0.00 3.36
2903 3421 3.476295 CGACATGGTGTTTCATCAAGG 57.524 47.619 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.