Multiple sequence alignment - TraesCS5A01G184700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G184700 chr5A 100.000 4539 0 0 1 4539 384217903 384213365 0.000000e+00 8383.0
1 TraesCS5A01G184700 chr5A 91.753 97 8 0 564 660 662665274 662665178 7.920000e-28 135.0
2 TraesCS5A01G184700 chr5A 90.196 102 9 1 564 664 564641538 564641437 1.020000e-26 132.0
3 TraesCS5A01G184700 chr5A 90.099 101 9 1 565 664 27548208 27548108 3.690000e-26 130.0
4 TraesCS5A01G184700 chr5A 89.320 103 11 0 562 664 66848673 66848775 3.690000e-26 130.0
5 TraesCS5A01G184700 chr5B 94.216 1798 81 12 2743 4539 332437321 332435546 0.000000e+00 2723.0
6 TraesCS5A01G184700 chr5B 87.741 726 45 14 692 1402 332438967 332438271 0.000000e+00 808.0
7 TraesCS5A01G184700 chr5B 87.692 390 39 4 1402 1783 332438139 332437751 3.220000e-121 446.0
8 TraesCS5A01G184700 chr5B 82.847 274 31 8 2245 2503 259558226 259557954 9.820000e-57 231.0
9 TraesCS5A01G184700 chr5B 79.775 267 39 9 2246 2505 120303661 120303403 3.610000e-41 180.0
10 TraesCS5A01G184700 chr5B 97.436 39 0 1 2190 2227 1751191 1751229 1.050000e-06 65.8
11 TraesCS5A01G184700 chr5B 90.909 44 4 0 2190 2233 43908143 43908100 4.900000e-05 60.2
12 TraesCS5A01G184700 chr5D 92.280 1917 108 21 2630 4539 291886750 291884867 0.000000e+00 2684.0
13 TraesCS5A01G184700 chr5D 91.461 1499 70 19 710 2187 291888194 291886733 0.000000e+00 2006.0
14 TraesCS5A01G184700 chr5D 83.420 579 70 8 1 563 291900047 291899479 8.710000e-142 514.0
15 TraesCS5A01G184700 chr5D 82.741 394 46 14 97 473 487003324 487003712 9.410000e-87 331.0
16 TraesCS5A01G184700 chr5D 78.770 504 75 17 1 488 539797142 539796655 4.410000e-80 309.0
17 TraesCS5A01G184700 chr5D 96.721 122 4 0 2506 2627 225256310 225256189 2.140000e-48 204.0
18 TraesCS5A01G184700 chr7D 84.501 471 52 8 1 453 629822081 629822548 3.220000e-121 446.0
19 TraesCS5A01G184700 chr7D 82.632 190 30 3 2228 2415 521688213 521688025 1.010000e-36 165.0
20 TraesCS5A01G184700 chr7D 77.481 262 43 9 2247 2508 52825903 52825658 4.730000e-30 143.0
21 TraesCS5A01G184700 chr2D 80.069 577 84 17 1 561 634479657 634479096 2.540000e-107 399.0
22 TraesCS5A01G184700 chr2D 82.057 457 60 12 21 459 627646047 627645595 1.990000e-98 370.0
23 TraesCS5A01G184700 chr2D 95.312 128 6 0 2506 2633 30487739 30487612 2.140000e-48 204.0
24 TraesCS5A01G184700 chr2D 75.090 277 47 18 2244 2505 125458948 125459217 4.800000e-20 110.0
25 TraesCS5A01G184700 chr2D 90.909 55 3 2 2169 2221 155831516 155831462 6.300000e-09 73.1
26 TraesCS5A01G184700 chr1A 79.472 492 83 13 1 480 52892387 52892872 2.620000e-87 333.0
27 TraesCS5A01G184700 chr1A 82.182 275 28 9 2251 2511 505195119 505194852 2.750000e-52 217.0
28 TraesCS5A01G184700 chr1A 80.556 108 20 1 1 108 82149551 82149445 1.050000e-11 82.4
29 TraesCS5A01G184700 chr6A 79.398 432 64 16 146 560 377482843 377483266 9.610000e-72 281.0
30 TraesCS5A01G184700 chr6A 89.623 106 9 2 561 664 486971354 486971249 2.850000e-27 134.0
31 TraesCS5A01G184700 chr6A 97.297 37 1 0 2185 2221 566542215 566542251 3.790000e-06 63.9
32 TraesCS5A01G184700 chr2B 81.006 358 46 13 117 459 578045608 578045258 9.680000e-67 265.0
33 TraesCS5A01G184700 chr2B 96.000 125 4 1 2506 2630 314778948 314779071 7.700000e-48 202.0
34 TraesCS5A01G184700 chr2B 85.864 191 18 6 2228 2415 449489421 449489605 1.290000e-45 195.0
35 TraesCS5A01G184700 chr2B 89.041 146 10 2 2298 2438 655523431 655523575 4.670000e-40 176.0
36 TraesCS5A01G184700 chr6D 79.442 394 55 13 100 473 266322086 266322473 5.830000e-64 255.0
37 TraesCS5A01G184700 chr6D 100.000 29 0 0 2227 2255 318956476 318956504 2.000000e-03 54.7
38 TraesCS5A01G184700 chr1D 81.091 275 40 7 2243 2506 464639453 464639180 4.600000e-50 209.0
39 TraesCS5A01G184700 chr1D 92.857 42 3 0 2180 2221 267792399 267792440 1.360000e-05 62.1
40 TraesCS5A01G184700 chr7A 95.349 129 6 0 2506 2634 323738756 323738628 5.950000e-49 206.0
41 TraesCS5A01G184700 chr7A 95.312 128 5 1 2506 2633 30662227 30662353 7.700000e-48 202.0
42 TraesCS5A01G184700 chr7A 89.320 103 11 0 557 659 222290311 222290413 3.690000e-26 130.0
43 TraesCS5A01G184700 chr7A 88.073 109 11 2 564 671 654511251 654511144 1.330000e-25 128.0
44 TraesCS5A01G184700 chr6B 96.748 123 4 0 2506 2628 91119203 91119325 5.950000e-49 206.0
45 TraesCS5A01G184700 chr6B 77.737 274 43 7 2250 2506 274061371 274061099 7.860000e-33 152.0
46 TraesCS5A01G184700 chr6B 97.297 37 1 0 2185 2221 630553805 630553841 3.790000e-06 63.9
47 TraesCS5A01G184700 chr4B 96.000 125 5 0 2506 2630 648316478 648316354 2.140000e-48 204.0
48 TraesCS5A01G184700 chr4B 79.904 209 33 6 2246 2447 16879308 16879514 1.320000e-30 145.0
49 TraesCS5A01G184700 chr4B 95.122 41 0 2 2182 2221 566117039 566117000 3.790000e-06 63.9
50 TraesCS5A01G184700 chr4B 89.796 49 2 3 2175 2221 262722267 262722314 4.900000e-05 60.2
51 TraesCS5A01G184700 chrUn 96.000 125 4 1 2506 2630 277314166 277314043 7.700000e-48 202.0
52 TraesCS5A01G184700 chrUn 92.857 42 3 0 2180 2221 224660902 224660943 1.360000e-05 62.1
53 TraesCS5A01G184700 chr4A 94.574 129 7 0 2506 2634 657204797 657204669 2.770000e-47 200.0
54 TraesCS5A01G184700 chr4A 77.215 158 34 1 400 555 567648392 567648549 1.740000e-14 91.6
55 TraesCS5A01G184700 chr3B 78.731 268 48 4 2246 2505 782813827 782814093 2.170000e-38 171.0
56 TraesCS5A01G184700 chr1B 81.643 207 29 6 2243 2447 567854470 567854669 3.630000e-36 163.0
57 TraesCS5A01G184700 chr1B 76.493 268 50 10 2253 2511 200944758 200945021 2.850000e-27 134.0
58 TraesCS5A01G184700 chr3A 77.023 309 37 20 2228 2510 714586984 714586684 3.660000e-31 147.0
59 TraesCS5A01G184700 chr2A 90.196 102 9 1 564 664 442518345 442518244 1.020000e-26 132.0
60 TraesCS5A01G184700 chr2A 88.889 108 11 1 564 671 512908332 512908438 1.020000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G184700 chr5A 384213365 384217903 4538 True 8383.000000 8383 100.0000 1 4539 1 chr5A.!!$R2 4538
1 TraesCS5A01G184700 chr5B 332435546 332438967 3421 True 1325.666667 2723 89.8830 692 4539 3 chr5B.!!$R4 3847
2 TraesCS5A01G184700 chr5D 291884867 291888194 3327 True 2345.000000 2684 91.8705 710 4539 2 chr5D.!!$R4 3829
3 TraesCS5A01G184700 chr5D 291899479 291900047 568 True 514.000000 514 83.4200 1 563 1 chr5D.!!$R2 562
4 TraesCS5A01G184700 chr2D 634479096 634479657 561 True 399.000000 399 80.0690 1 561 1 chr2D.!!$R4 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
823 860 0.322456 CCCACTCATCGCAAAAGGGA 60.322 55.0 0.00 0.00 36.96 4.20 F
2214 2402 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.0 12.44 8.34 40.80 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2795 3011 0.038166 AGAATGAACCGTGCATGGGT 59.962 50.0 28.37 23.81 40.2 4.51 R
4158 4387 0.036875 AAGGAAGCCAGAACCGGAAG 59.963 55.0 9.46 0.00 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.326548 GCTTACGAGCGTCATTTAAGAAGT 59.673 41.667 0.00 0.00 39.48 3.01
30 31 4.082354 ACGAGCGTCATTTAAGAAGTAGGT 60.082 41.667 0.00 0.00 0.00 3.08
77 78 3.774528 CAGGTAGCTGGCTCGGCA 61.775 66.667 14.29 0.00 38.37 5.69
166 167 4.988598 CCGAGGTGGTGCTTGCGT 62.989 66.667 0.00 0.00 0.00 5.24
224 225 4.856801 GGTGGTGGCGGCGATGAT 62.857 66.667 12.98 0.00 0.00 2.45
241 242 2.748058 GATGTGGGAAGGTGGCGTGT 62.748 60.000 0.00 0.00 0.00 4.49
244 245 2.203294 GGGAAGGTGGCGTGTTGT 60.203 61.111 0.00 0.00 0.00 3.32
264 265 2.305607 GGGGAGGTATGTGGGTGCA 61.306 63.158 0.00 0.00 0.00 4.57
269 270 2.108168 GAGGTATGTGGGTGCAGACTA 58.892 52.381 0.00 0.00 31.87 2.59
272 273 3.028850 GGTATGTGGGTGCAGACTACTA 58.971 50.000 6.43 0.00 31.87 1.82
284 285 1.133761 AGACTACTAGCGAGGGCATCA 60.134 52.381 0.00 0.00 43.41 3.07
367 373 1.815421 GCCTATGTGCCACCGACTG 60.815 63.158 0.00 0.00 0.00 3.51
386 392 3.151022 CGGGTCAGAGGGAGGAGC 61.151 72.222 0.00 0.00 0.00 4.70
387 393 3.151022 GGGTCAGAGGGAGGAGCG 61.151 72.222 0.00 0.00 32.51 5.03
439 456 4.562143 GCAAATGAGGTCCAAATTTGAGCT 60.562 41.667 23.55 18.01 41.64 4.09
445 462 4.336280 AGGTCCAAATTTGAGCTAGGAAC 58.664 43.478 19.86 9.62 33.08 3.62
447 464 4.000988 GTCCAAATTTGAGCTAGGAACGA 58.999 43.478 19.86 1.32 0.00 3.85
456 473 3.122250 CTAGGAACGAGTCGCCCGG 62.122 68.421 13.59 8.90 0.00 5.73
475 492 2.430244 GAACGAAGAGCGGACGCA 60.430 61.111 19.48 0.00 46.49 5.24
476 493 2.717809 GAACGAAGAGCGGACGCAC 61.718 63.158 19.48 12.80 46.49 5.34
505 522 7.709947 TGTTTAGACCAACGTATTAGATCGAT 58.290 34.615 0.00 0.00 0.00 3.59
526 543 8.221801 TCGATTTTTATGTTTGTTTTGATCCG 57.778 30.769 0.00 0.00 0.00 4.18
532 549 2.033550 TGTTTGTTTTGATCCGAACGGG 59.966 45.455 13.29 0.00 35.59 5.28
563 582 2.871096 AATGGGTCGGCAAGTTAGAA 57.129 45.000 0.00 0.00 0.00 2.10
564 583 2.871096 ATGGGTCGGCAAGTTAGAAA 57.129 45.000 0.00 0.00 0.00 2.52
565 584 2.642154 TGGGTCGGCAAGTTAGAAAA 57.358 45.000 0.00 0.00 0.00 2.29
566 585 2.933573 TGGGTCGGCAAGTTAGAAAAA 58.066 42.857 0.00 0.00 0.00 1.94
592 611 8.446599 AAATTATATAAAACCAGGTCTCACGG 57.553 34.615 0.00 0.00 0.00 4.94
593 612 6.549433 TTATATAAAACCAGGTCTCACGGT 57.451 37.500 0.00 0.00 33.32 4.83
594 613 3.782656 ATAAAACCAGGTCTCACGGTT 57.217 42.857 0.00 0.00 44.90 4.44
595 614 4.895668 ATAAAACCAGGTCTCACGGTTA 57.104 40.909 0.00 0.00 42.18 2.85
596 615 3.564053 AAAACCAGGTCTCACGGTTAA 57.436 42.857 0.00 0.00 42.18 2.01
597 616 2.538512 AACCAGGTCTCACGGTTAAC 57.461 50.000 0.00 0.00 41.22 2.01
598 617 1.416243 ACCAGGTCTCACGGTTAACA 58.584 50.000 8.10 0.00 0.00 2.41
599 618 1.343465 ACCAGGTCTCACGGTTAACAG 59.657 52.381 8.10 6.02 0.00 3.16
600 619 1.337823 CCAGGTCTCACGGTTAACAGG 60.338 57.143 10.55 2.73 0.00 4.00
601 620 1.343465 CAGGTCTCACGGTTAACAGGT 59.657 52.381 10.55 3.36 0.00 4.00
602 621 1.343465 AGGTCTCACGGTTAACAGGTG 59.657 52.381 18.03 18.03 0.00 4.00
603 622 1.342174 GGTCTCACGGTTAACAGGTGA 59.658 52.381 22.59 22.59 38.29 4.02
604 623 2.224113 GGTCTCACGGTTAACAGGTGAA 60.224 50.000 23.53 15.57 39.91 3.18
605 624 3.460103 GTCTCACGGTTAACAGGTGAAA 58.540 45.455 23.53 14.04 39.91 2.69
606 625 3.246936 GTCTCACGGTTAACAGGTGAAAC 59.753 47.826 23.53 19.54 39.91 2.78
629 648 1.250328 TCCTAACGGATGACACGTGT 58.750 50.000 23.64 23.64 44.83 4.49
630 649 1.614903 TCCTAACGGATGACACGTGTT 59.385 47.619 24.26 7.79 44.83 3.32
631 650 2.819019 TCCTAACGGATGACACGTGTTA 59.181 45.455 24.26 20.05 44.83 2.41
632 651 3.444742 TCCTAACGGATGACACGTGTTAT 59.555 43.478 24.21 24.21 44.83 1.89
633 652 4.082081 TCCTAACGGATGACACGTGTTATT 60.082 41.667 24.66 13.52 44.83 1.40
634 653 4.266976 CCTAACGGATGACACGTGTTATTC 59.733 45.833 24.66 21.91 44.83 1.75
635 654 3.306917 ACGGATGACACGTGTTATTCA 57.693 42.857 26.10 18.67 43.78 2.57
636 655 2.991190 ACGGATGACACGTGTTATTCAC 59.009 45.455 26.10 18.15 43.78 3.18
637 656 2.990514 CGGATGACACGTGTTATTCACA 59.009 45.455 26.10 17.70 46.44 3.58
638 657 3.430556 CGGATGACACGTGTTATTCACAA 59.569 43.478 26.10 6.64 46.44 3.33
639 658 4.084276 CGGATGACACGTGTTATTCACAAA 60.084 41.667 26.10 5.74 46.44 2.83
640 659 5.390461 CGGATGACACGTGTTATTCACAAAT 60.390 40.000 26.10 5.70 46.44 2.32
641 660 6.021596 GGATGACACGTGTTATTCACAAATC 58.978 40.000 24.66 11.68 46.44 2.17
642 661 5.993106 TGACACGTGTTATTCACAAATCA 57.007 34.783 24.26 8.42 46.44 2.57
643 662 5.743467 TGACACGTGTTATTCACAAATCAC 58.257 37.500 24.26 4.96 46.44 3.06
644 663 5.294552 TGACACGTGTTATTCACAAATCACA 59.705 36.000 24.26 7.75 46.44 3.58
645 664 6.125327 ACACGTGTTATTCACAAATCACAA 57.875 33.333 17.22 0.00 46.44 3.33
646 665 6.556212 ACACGTGTTATTCACAAATCACAAA 58.444 32.000 17.22 0.00 46.44 2.83
647 666 6.690957 ACACGTGTTATTCACAAATCACAAAG 59.309 34.615 17.22 0.00 46.44 2.77
648 667 5.685511 ACGTGTTATTCACAAATCACAAAGC 59.314 36.000 0.00 0.00 46.44 3.51
649 668 5.685068 CGTGTTATTCACAAATCACAAAGCA 59.315 36.000 0.00 0.00 46.44 3.91
650 669 6.363088 CGTGTTATTCACAAATCACAAAGCAT 59.637 34.615 0.00 0.00 46.44 3.79
651 670 7.409661 CGTGTTATTCACAAATCACAAAGCATC 60.410 37.037 0.00 0.00 46.44 3.91
652 671 7.596248 GTGTTATTCACAAATCACAAAGCATCT 59.404 33.333 0.00 0.00 45.51 2.90
653 672 8.791675 TGTTATTCACAAATCACAAAGCATCTA 58.208 29.630 0.00 0.00 28.49 1.98
654 673 9.624697 GTTATTCACAAATCACAAAGCATCTAA 57.375 29.630 0.00 0.00 0.00 2.10
656 675 8.922058 ATTCACAAATCACAAAGCATCTAATC 57.078 30.769 0.00 0.00 0.00 1.75
657 676 7.692460 TCACAAATCACAAAGCATCTAATCT 57.308 32.000 0.00 0.00 0.00 2.40
658 677 7.755591 TCACAAATCACAAAGCATCTAATCTC 58.244 34.615 0.00 0.00 0.00 2.75
659 678 7.609146 TCACAAATCACAAAGCATCTAATCTCT 59.391 33.333 0.00 0.00 0.00 3.10
660 679 8.242053 CACAAATCACAAAGCATCTAATCTCTT 58.758 33.333 0.00 0.00 0.00 2.85
661 680 8.457261 ACAAATCACAAAGCATCTAATCTCTTC 58.543 33.333 0.00 0.00 0.00 2.87
662 681 7.565323 AATCACAAAGCATCTAATCTCTTCC 57.435 36.000 0.00 0.00 0.00 3.46
663 682 5.431765 TCACAAAGCATCTAATCTCTTCCC 58.568 41.667 0.00 0.00 0.00 3.97
664 683 4.272018 CACAAAGCATCTAATCTCTTCCCG 59.728 45.833 0.00 0.00 0.00 5.14
665 684 4.080863 ACAAAGCATCTAATCTCTTCCCGT 60.081 41.667 0.00 0.00 0.00 5.28
666 685 3.742433 AGCATCTAATCTCTTCCCGTG 57.258 47.619 0.00 0.00 0.00 4.94
667 686 2.139118 GCATCTAATCTCTTCCCGTGC 58.861 52.381 0.00 0.00 0.00 5.34
668 687 2.483714 GCATCTAATCTCTTCCCGTGCA 60.484 50.000 0.00 0.00 0.00 4.57
669 688 3.805108 GCATCTAATCTCTTCCCGTGCAT 60.805 47.826 0.00 0.00 0.00 3.96
670 689 4.384056 CATCTAATCTCTTCCCGTGCATT 58.616 43.478 0.00 0.00 0.00 3.56
671 690 5.541845 CATCTAATCTCTTCCCGTGCATTA 58.458 41.667 0.00 0.00 0.00 1.90
672 691 5.201713 TCTAATCTCTTCCCGTGCATTAG 57.798 43.478 0.00 0.00 0.00 1.73
673 692 2.246719 ATCTCTTCCCGTGCATTAGC 57.753 50.000 0.00 0.00 42.57 3.09
695 714 4.367450 CAAAACTGAATTCTTTTCCGGCA 58.633 39.130 7.05 0.00 0.00 5.69
703 722 1.604604 TCTTTTCCGGCAAGTTGGAG 58.395 50.000 4.75 0.00 35.26 3.86
706 725 1.028905 TTTCCGGCAAGTTGGAGTTG 58.971 50.000 4.75 0.00 35.26 3.16
823 860 0.322456 CCCACTCATCGCAAAAGGGA 60.322 55.000 0.00 0.00 36.96 4.20
845 882 2.293627 CGAAGATTACCGGAGCGCG 61.294 63.158 9.46 0.00 0.00 6.86
903 940 1.694169 ACCTCAGCCGAATCCCCAT 60.694 57.895 0.00 0.00 0.00 4.00
916 953 4.162131 CGAATCCCCATTTCTCCCATTTTT 59.838 41.667 0.00 0.00 0.00 1.94
927 964 1.211949 TCCCATTTTTCCCGAGGCTAG 59.788 52.381 0.00 0.00 0.00 3.42
928 965 1.211949 CCCATTTTTCCCGAGGCTAGA 59.788 52.381 0.00 0.00 0.00 2.43
929 966 2.158608 CCCATTTTTCCCGAGGCTAGAT 60.159 50.000 0.00 0.00 0.00 1.98
930 967 3.142174 CCATTTTTCCCGAGGCTAGATC 58.858 50.000 0.00 0.00 0.00 2.75
931 968 3.181450 CCATTTTTCCCGAGGCTAGATCT 60.181 47.826 0.00 0.00 0.00 2.75
932 969 4.455606 CATTTTTCCCGAGGCTAGATCTT 58.544 43.478 0.00 0.00 0.00 2.40
933 970 3.543680 TTTTCCCGAGGCTAGATCTTG 57.456 47.619 0.00 0.00 0.00 3.02
934 971 2.160721 TTCCCGAGGCTAGATCTTGT 57.839 50.000 0.00 0.00 0.00 3.16
935 972 2.160721 TCCCGAGGCTAGATCTTGTT 57.839 50.000 0.00 0.00 0.00 2.83
936 973 2.032620 TCCCGAGGCTAGATCTTGTTC 58.967 52.381 0.00 0.85 0.00 3.18
937 974 1.069358 CCCGAGGCTAGATCTTGTTCC 59.931 57.143 0.00 0.00 0.00 3.62
938 975 1.757118 CCGAGGCTAGATCTTGTTCCA 59.243 52.381 0.00 0.00 0.00 3.53
939 976 2.366916 CCGAGGCTAGATCTTGTTCCAT 59.633 50.000 0.00 0.00 0.00 3.41
940 977 3.181461 CCGAGGCTAGATCTTGTTCCATT 60.181 47.826 0.00 0.00 0.00 3.16
941 978 4.446371 CGAGGCTAGATCTTGTTCCATTT 58.554 43.478 0.00 0.00 0.00 2.32
942 979 4.878397 CGAGGCTAGATCTTGTTCCATTTT 59.122 41.667 0.00 0.00 0.00 1.82
943 980 5.355350 CGAGGCTAGATCTTGTTCCATTTTT 59.645 40.000 0.00 0.00 0.00 1.94
944 981 6.457528 CGAGGCTAGATCTTGTTCCATTTTTC 60.458 42.308 0.00 0.00 0.00 2.29
945 982 5.654209 AGGCTAGATCTTGTTCCATTTTTCC 59.346 40.000 0.00 0.00 0.00 3.13
946 983 5.163509 GGCTAGATCTTGTTCCATTTTTCCC 60.164 44.000 0.00 0.00 0.00 3.97
947 984 5.449177 GCTAGATCTTGTTCCATTTTTCCCG 60.449 44.000 0.00 0.00 0.00 5.14
948 985 4.662278 AGATCTTGTTCCATTTTTCCCGA 58.338 39.130 0.00 0.00 0.00 5.14
949 986 4.702131 AGATCTTGTTCCATTTTTCCCGAG 59.298 41.667 0.00 0.00 0.00 4.63
950 987 3.153919 TCTTGTTCCATTTTTCCCGAGG 58.846 45.455 0.00 0.00 0.00 4.63
951 988 1.253100 TGTTCCATTTTTCCCGAGGC 58.747 50.000 0.00 0.00 0.00 4.70
952 989 1.203001 TGTTCCATTTTTCCCGAGGCT 60.203 47.619 0.00 0.00 0.00 4.58
953 990 2.040545 TGTTCCATTTTTCCCGAGGCTA 59.959 45.455 0.00 0.00 0.00 3.93
1032 1069 0.840722 ATCAAGAACCGGGGGTGAGT 60.841 55.000 6.32 0.00 35.34 3.41
1044 1081 2.698763 GGTGAGTCTCCGGACGGAC 61.699 68.421 14.45 14.45 46.29 4.79
1100 1137 3.119316 CGGATCCCGGATAAGATTCAGAG 60.119 52.174 0.73 0.00 44.15 3.35
1139 1176 3.580022 TGCTTCTTGATCAGGTGAAGAGA 59.420 43.478 25.68 11.48 38.42 3.10
1158 1196 6.582677 AGAGATCCTTTGTTATCGATCGAT 57.417 37.500 31.39 31.39 36.94 3.59
1176 1214 1.476488 GATGGGGTCGAAATTGGTTGG 59.524 52.381 0.00 0.00 0.00 3.77
1257 1295 2.895372 GATGGTGTTAGCGGCGGG 60.895 66.667 9.78 0.00 0.00 6.13
1470 1640 7.122055 TGCTTGTATTGTAGGTTAAAAGATGGG 59.878 37.037 0.00 0.00 0.00 4.00
1510 1683 9.844257 AAAATTAAATTGGACACAAGGAAATCA 57.156 25.926 0.00 0.00 40.49 2.57
1566 1739 8.974060 TGTTCCAGTAGGTCATAATTATTTCC 57.026 34.615 0.00 1.77 35.89 3.13
1828 2006 2.224523 TGAGGTGGAATGGACTTGTGAC 60.225 50.000 0.00 0.00 0.00 3.67
1829 2007 1.073923 AGGTGGAATGGACTTGTGACC 59.926 52.381 0.00 0.00 0.00 4.02
1839 2017 2.027469 GGACTTGTGACCGTTAAGGGAT 60.027 50.000 20.75 5.20 46.96 3.85
1843 2021 1.066430 TGTGACCGTTAAGGGATCTGC 60.066 52.381 20.75 11.11 46.96 4.26
1892 2070 7.110155 TCTTAAGTGTTGGTCTCTCAAAAAGT 58.890 34.615 1.63 0.00 0.00 2.66
1943 2123 4.655963 AGGCACTCAGTCATTGTTGTATT 58.344 39.130 0.00 0.00 0.00 1.89
1944 2124 5.072741 AGGCACTCAGTCATTGTTGTATTT 58.927 37.500 0.00 0.00 0.00 1.40
1975 2155 5.479306 TGTATAGAGCAAAGTGGTTCTGTC 58.521 41.667 0.00 0.00 30.58 3.51
1994 2174 2.028567 GTCATGCAATTCCCCGGAAAAA 60.029 45.455 0.73 0.00 37.69 1.94
1998 2178 2.289945 TGCAATTCCCCGGAAAAATTGG 60.290 45.455 24.74 10.23 39.59 3.16
2020 2200 2.758736 TGCAATTCCCCGGAAAATTG 57.241 45.000 25.31 25.31 42.88 2.32
2021 2201 1.974236 TGCAATTCCCCGGAAAATTGT 59.026 42.857 27.69 5.63 42.29 2.71
2050 2231 5.934043 TCTTCATACATTTATCTGATGCCCG 59.066 40.000 0.00 0.00 0.00 6.13
2064 2245 5.870978 TCTGATGCCCGTTAACTAACTTAAC 59.129 40.000 3.71 0.00 40.63 2.01
2087 2268 1.762708 TAATTAACTGGCTGGCCTGC 58.237 50.000 25.39 25.39 38.41 4.85
2090 2271 0.895100 TTAACTGGCTGGCCTGCAAG 60.895 55.000 31.60 31.60 39.77 4.01
2109 2290 6.851609 TGCAAGGTTGTAAGTGCTATAAATG 58.148 36.000 0.00 0.00 37.87 2.32
2162 2350 6.363088 TGACACAATCTGAAATGCGATTTTTC 59.637 34.615 0.00 0.00 34.40 2.29
2179 2367 1.540267 TTCCCCCGCAAAGTTATGTG 58.460 50.000 0.00 0.00 0.00 3.21
2180 2368 0.402504 TCCCCCGCAAAGTTATGTGT 59.597 50.000 0.00 0.00 0.00 3.72
2182 2370 1.201414 CCCCCGCAAAGTTATGTGTTC 59.799 52.381 0.00 0.00 0.00 3.18
2183 2371 1.201414 CCCCGCAAAGTTATGTGTTCC 59.799 52.381 0.00 0.00 0.00 3.62
2184 2372 2.159382 CCCGCAAAGTTATGTGTTCCT 58.841 47.619 0.00 0.00 0.00 3.36
2185 2373 2.095263 CCCGCAAAGTTATGTGTTCCTG 60.095 50.000 0.00 0.00 0.00 3.86
2186 2374 2.552315 CCGCAAAGTTATGTGTTCCTGT 59.448 45.455 0.00 0.00 0.00 4.00
2187 2375 3.364964 CCGCAAAGTTATGTGTTCCTGTC 60.365 47.826 0.00 0.00 0.00 3.51
2188 2376 3.364964 CGCAAAGTTATGTGTTCCTGTCC 60.365 47.826 0.00 0.00 0.00 4.02
2189 2377 3.821033 GCAAAGTTATGTGTTCCTGTCCT 59.179 43.478 0.00 0.00 0.00 3.85
2190 2378 4.320494 GCAAAGTTATGTGTTCCTGTCCTG 60.320 45.833 0.00 0.00 0.00 3.86
2191 2379 3.703001 AGTTATGTGTTCCTGTCCTGG 57.297 47.619 0.00 0.00 0.00 4.45
2192 2380 2.084546 GTTATGTGTTCCTGTCCTGGC 58.915 52.381 0.00 0.00 0.00 4.85
2193 2381 0.249120 TATGTGTTCCTGTCCTGGCG 59.751 55.000 0.00 0.00 0.00 5.69
2194 2382 3.050275 GTGTTCCTGTCCTGGCGC 61.050 66.667 0.00 0.00 0.00 6.53
2195 2383 3.555324 TGTTCCTGTCCTGGCGCA 61.555 61.111 10.83 0.00 0.00 6.09
2196 2384 2.743928 GTTCCTGTCCTGGCGCAG 60.744 66.667 10.83 4.65 0.00 5.18
2197 2385 3.241530 TTCCTGTCCTGGCGCAGT 61.242 61.111 10.83 0.00 0.00 4.40
2198 2386 3.535629 TTCCTGTCCTGGCGCAGTG 62.536 63.158 10.83 0.00 0.00 3.66
2200 2388 4.320456 CTGTCCTGGCGCAGTGGT 62.320 66.667 10.83 0.00 0.00 4.16
2201 2389 2.920384 TGTCCTGGCGCAGTGGTA 60.920 61.111 10.83 0.00 0.00 3.25
2202 2390 2.345991 GTCCTGGCGCAGTGGTAA 59.654 61.111 10.83 0.00 0.00 2.85
2203 2391 1.302192 GTCCTGGCGCAGTGGTAAA 60.302 57.895 10.83 0.00 0.00 2.01
2204 2392 1.003839 TCCTGGCGCAGTGGTAAAG 60.004 57.895 10.83 0.00 0.00 1.85
2205 2393 2.690778 CCTGGCGCAGTGGTAAAGC 61.691 63.158 10.83 0.00 0.00 3.51
2206 2394 1.672356 CTGGCGCAGTGGTAAAGCT 60.672 57.895 10.83 0.00 0.00 3.74
2207 2395 1.915614 CTGGCGCAGTGGTAAAGCTG 61.916 60.000 10.83 0.00 35.93 4.24
2212 2400 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2213 2401 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2214 2402 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2215 2403 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2216 2404 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2217 2405 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2218 2406 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2219 2407 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2220 2408 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2221 2409 2.282040 GCTGCTGCCTTGTGACCT 60.282 61.111 3.85 0.00 0.00 3.85
2222 2410 2.623915 GCTGCTGCCTTGTGACCTG 61.624 63.158 3.85 0.00 0.00 4.00
2223 2411 1.970114 CTGCTGCCTTGTGACCTGG 60.970 63.158 0.00 0.00 0.00 4.45
2224 2412 2.401699 CTGCTGCCTTGTGACCTGGA 62.402 60.000 0.00 0.00 0.00 3.86
2225 2413 1.228245 GCTGCCTTGTGACCTGGAA 60.228 57.895 0.00 0.00 0.00 3.53
2226 2414 0.823356 GCTGCCTTGTGACCTGGAAA 60.823 55.000 0.00 0.00 0.00 3.13
2227 2415 1.915141 CTGCCTTGTGACCTGGAAAT 58.085 50.000 0.00 0.00 0.00 2.17
2228 2416 2.879756 GCTGCCTTGTGACCTGGAAATA 60.880 50.000 0.00 0.00 0.00 1.40
2229 2417 3.624777 CTGCCTTGTGACCTGGAAATAT 58.375 45.455 0.00 0.00 0.00 1.28
2230 2418 4.780815 CTGCCTTGTGACCTGGAAATATA 58.219 43.478 0.00 0.00 0.00 0.86
2231 2419 4.523083 TGCCTTGTGACCTGGAAATATAC 58.477 43.478 0.00 0.00 0.00 1.47
2232 2420 3.883489 GCCTTGTGACCTGGAAATATACC 59.117 47.826 0.00 0.00 0.00 2.73
2233 2421 4.385310 GCCTTGTGACCTGGAAATATACCT 60.385 45.833 0.00 0.00 0.00 3.08
2234 2422 5.126067 CCTTGTGACCTGGAAATATACCTG 58.874 45.833 0.00 0.00 0.00 4.00
2236 2424 3.118038 TGTGACCTGGAAATATACCTGGC 60.118 47.826 18.19 13.56 46.06 4.85
2237 2425 2.441750 TGACCTGGAAATATACCTGGCC 59.558 50.000 18.19 0.00 46.06 5.36
2238 2426 2.441750 GACCTGGAAATATACCTGGCCA 59.558 50.000 4.71 4.71 46.06 5.36
2239 2427 3.063650 ACCTGGAAATATACCTGGCCAT 58.936 45.455 5.51 0.00 46.06 4.40
2240 2428 3.074538 ACCTGGAAATATACCTGGCCATC 59.925 47.826 5.51 0.00 46.06 3.51
2241 2429 3.562176 CCTGGAAATATACCTGGCCATCC 60.562 52.174 5.51 8.56 39.07 3.51
2242 2430 2.378547 TGGAAATATACCTGGCCATCCC 59.621 50.000 5.51 0.00 0.00 3.85
2243 2431 2.649816 GGAAATATACCTGGCCATCCCT 59.350 50.000 5.51 0.00 0.00 4.20
2244 2432 3.076032 GGAAATATACCTGGCCATCCCTT 59.924 47.826 5.51 0.00 0.00 3.95
2245 2433 3.814504 AATATACCTGGCCATCCCTTG 57.185 47.619 5.51 0.00 0.00 3.61
2247 2435 1.363530 ATACCTGGCCATCCCTTGGG 61.364 60.000 5.51 4.26 46.55 4.12
2268 2456 2.595655 GGCCTAACCAAGCCCGAT 59.404 61.111 0.00 0.00 43.76 4.18
2269 2457 1.823899 GGCCTAACCAAGCCCGATG 60.824 63.158 0.00 0.00 43.76 3.84
2270 2458 2.481471 GCCTAACCAAGCCCGATGC 61.481 63.158 0.00 0.00 41.71 3.91
2271 2459 1.077787 CCTAACCAAGCCCGATGCA 60.078 57.895 0.00 0.00 44.83 3.96
2272 2460 0.679640 CCTAACCAAGCCCGATGCAA 60.680 55.000 0.00 0.00 44.83 4.08
2273 2461 1.173043 CTAACCAAGCCCGATGCAAA 58.827 50.000 0.00 0.00 44.83 3.68
2274 2462 1.543802 CTAACCAAGCCCGATGCAAAA 59.456 47.619 0.00 0.00 44.83 2.44
2275 2463 0.755686 AACCAAGCCCGATGCAAAAA 59.244 45.000 0.00 0.00 44.83 1.94
2291 2479 2.931921 AAAAACAGGCCCGGACCT 59.068 55.556 2.07 2.07 42.30 3.85
2323 2511 2.832672 GCGTCAGGCCTAAAAATCAG 57.167 50.000 3.98 0.00 34.80 2.90
2324 2512 1.401905 GCGTCAGGCCTAAAAATCAGG 59.598 52.381 3.98 0.00 36.16 3.86
2331 2519 2.967599 CCTAAAAATCAGGCCCAAGC 57.032 50.000 0.00 0.00 38.76 4.01
2348 2536 4.028490 CCCGGCCTGCCAGTGTAA 62.028 66.667 9.17 0.00 35.37 2.41
2349 2537 2.033448 CCGGCCTGCCAGTGTAAA 59.967 61.111 9.17 0.00 35.37 2.01
2350 2538 1.602323 CCGGCCTGCCAGTGTAAAA 60.602 57.895 9.17 0.00 35.37 1.52
2351 2539 1.586154 CCGGCCTGCCAGTGTAAAAG 61.586 60.000 9.17 0.00 35.37 2.27
2352 2540 1.586541 GGCCTGCCAGTGTAAAAGC 59.413 57.895 2.58 0.00 35.81 3.51
2353 2541 1.586541 GCCTGCCAGTGTAAAAGCC 59.413 57.895 0.00 0.00 0.00 4.35
2354 2542 0.895559 GCCTGCCAGTGTAAAAGCCT 60.896 55.000 0.00 0.00 0.00 4.58
2355 2543 0.883833 CCTGCCAGTGTAAAAGCCTG 59.116 55.000 0.00 0.00 0.00 4.85
2356 2544 0.242017 CTGCCAGTGTAAAAGCCTGC 59.758 55.000 0.00 0.00 0.00 4.85
2357 2545 1.178534 TGCCAGTGTAAAAGCCTGCC 61.179 55.000 0.00 0.00 0.00 4.85
2358 2546 1.178534 GCCAGTGTAAAAGCCTGCCA 61.179 55.000 0.00 0.00 0.00 4.92
2359 2547 0.883833 CCAGTGTAAAAGCCTGCCAG 59.116 55.000 0.00 0.00 0.00 4.85
2360 2548 1.545428 CCAGTGTAAAAGCCTGCCAGA 60.545 52.381 0.00 0.00 0.00 3.86
2361 2549 1.537202 CAGTGTAAAAGCCTGCCAGAC 59.463 52.381 0.00 0.00 0.00 3.51
2362 2550 0.881796 GTGTAAAAGCCTGCCAGACC 59.118 55.000 0.00 0.00 0.00 3.85
2363 2551 0.771127 TGTAAAAGCCTGCCAGACCT 59.229 50.000 0.00 0.00 0.00 3.85
2364 2552 1.144913 TGTAAAAGCCTGCCAGACCTT 59.855 47.619 0.00 0.00 0.00 3.50
2365 2553 1.541588 GTAAAAGCCTGCCAGACCTTG 59.458 52.381 0.00 0.00 0.00 3.61
2373 2561 4.748144 CCAGACCTTGGGCCAGGC 62.748 72.222 18.40 1.26 43.75 4.85
2383 2571 2.987125 GGCCAGGCCTCTTCGTTA 59.013 61.111 24.99 0.00 46.69 3.18
2384 2572 1.298667 GGCCAGGCCTCTTCGTTAA 59.701 57.895 24.99 0.00 46.69 2.01
2385 2573 1.025113 GGCCAGGCCTCTTCGTTAAC 61.025 60.000 24.99 0.00 46.69 2.01
2386 2574 1.359459 GCCAGGCCTCTTCGTTAACG 61.359 60.000 21.85 21.85 41.45 3.18
2387 2575 1.359459 CCAGGCCTCTTCGTTAACGC 61.359 60.000 22.96 7.70 39.60 4.84
2388 2576 1.445582 AGGCCTCTTCGTTAACGCG 60.446 57.895 22.96 15.60 39.60 6.01
2389 2577 2.394524 GCCTCTTCGTTAACGCGC 59.605 61.111 22.96 14.00 39.60 6.86
2390 2578 2.092882 GCCTCTTCGTTAACGCGCT 61.093 57.895 22.96 0.00 39.60 5.92
2391 2579 0.799534 GCCTCTTCGTTAACGCGCTA 60.800 55.000 22.96 2.86 39.60 4.26
2392 2580 1.621107 CCTCTTCGTTAACGCGCTAA 58.379 50.000 22.96 11.00 39.60 3.09
2393 2581 2.190981 CCTCTTCGTTAACGCGCTAAT 58.809 47.619 22.96 0.00 39.60 1.73
2394 2582 3.365832 CCTCTTCGTTAACGCGCTAATA 58.634 45.455 22.96 0.87 39.60 0.98
2395 2583 3.979495 CCTCTTCGTTAACGCGCTAATAT 59.021 43.478 22.96 0.00 39.60 1.28
2396 2584 4.143597 CCTCTTCGTTAACGCGCTAATATG 60.144 45.833 22.96 6.64 39.60 1.78
2397 2585 3.732219 TCTTCGTTAACGCGCTAATATGG 59.268 43.478 22.96 1.17 39.60 2.74
2398 2586 1.788308 TCGTTAACGCGCTAATATGGC 59.212 47.619 22.96 0.00 39.60 4.40
2405 2593 3.987404 GCTAATATGGCGGGCCTG 58.013 61.111 7.41 7.41 36.94 4.85
2406 2594 1.675641 GCTAATATGGCGGGCCTGG 60.676 63.158 15.02 1.19 36.94 4.45
2407 2595 1.002134 CTAATATGGCGGGCCTGGG 60.002 63.158 15.02 0.00 36.94 4.45
2408 2596 3.204467 TAATATGGCGGGCCTGGGC 62.204 63.158 15.02 12.58 41.06 5.36
2433 2621 2.565841 CCTTCGGGCTTGAAATCTAGG 58.434 52.381 0.00 0.00 0.00 3.02
2434 2622 1.943340 CTTCGGGCTTGAAATCTAGGC 59.057 52.381 9.36 9.36 41.89 3.93
2437 2625 2.707902 GGCTTGAAATCTAGGCCCG 58.292 57.895 0.00 0.00 38.07 6.13
2438 2626 0.180406 GGCTTGAAATCTAGGCCCGA 59.820 55.000 0.00 0.00 38.07 5.14
2439 2627 1.587547 GCTTGAAATCTAGGCCCGAG 58.412 55.000 0.00 0.00 0.00 4.63
2440 2628 1.587547 CTTGAAATCTAGGCCCGAGC 58.412 55.000 0.00 0.00 38.76 5.03
2505 2693 2.193248 GCCCATGGCCAGGTCTAC 59.807 66.667 17.55 0.00 44.06 2.59
2506 2694 2.919043 CCCATGGCCAGGTCTACC 59.081 66.667 17.55 0.00 0.00 3.18
2526 2714 1.571955 TGGATACAGCCTCTTGCAGA 58.428 50.000 0.00 0.00 46.17 4.26
2527 2715 1.908619 TGGATACAGCCTCTTGCAGAA 59.091 47.619 0.00 0.00 46.17 3.02
2528 2716 2.305635 TGGATACAGCCTCTTGCAGAAA 59.694 45.455 0.00 0.00 46.17 2.52
2529 2717 3.054139 TGGATACAGCCTCTTGCAGAAAT 60.054 43.478 0.00 0.00 46.17 2.17
2530 2718 3.314635 GGATACAGCCTCTTGCAGAAATG 59.685 47.826 0.00 0.00 44.83 2.32
2531 2719 2.283145 ACAGCCTCTTGCAGAAATGT 57.717 45.000 0.00 0.00 44.83 2.71
2532 2720 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
2533 2721 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
2534 2722 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
2535 2723 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
2536 2724 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
2537 2725 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
2538 2726 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
2539 2727 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
2540 2728 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
2541 2729 3.806949 TGCAGAAATGTAGGGAAAGGT 57.193 42.857 0.00 0.00 0.00 3.50
2542 2730 4.112634 TGCAGAAATGTAGGGAAAGGTT 57.887 40.909 0.00 0.00 0.00 3.50
2543 2731 3.826157 TGCAGAAATGTAGGGAAAGGTTG 59.174 43.478 0.00 0.00 0.00 3.77
2544 2732 3.367395 GCAGAAATGTAGGGAAAGGTTGC 60.367 47.826 0.00 0.00 0.00 4.17
2545 2733 3.081804 AGAAATGTAGGGAAAGGTTGCG 58.918 45.455 0.00 0.00 0.00 4.85
2546 2734 2.579410 AATGTAGGGAAAGGTTGCGT 57.421 45.000 0.00 0.00 0.00 5.24
2547 2735 3.706600 AATGTAGGGAAAGGTTGCGTA 57.293 42.857 0.00 0.00 0.00 4.42
2548 2736 2.460757 TGTAGGGAAAGGTTGCGTAC 57.539 50.000 5.68 5.68 41.02 3.67
2549 2737 1.693062 TGTAGGGAAAGGTTGCGTACA 59.307 47.619 9.90 9.90 45.58 2.90
2550 2738 2.104451 TGTAGGGAAAGGTTGCGTACAA 59.896 45.455 11.11 0.00 45.08 2.41
2551 2739 2.579410 AGGGAAAGGTTGCGTACAAT 57.421 45.000 0.00 0.00 38.27 2.71
2552 2740 3.706600 AGGGAAAGGTTGCGTACAATA 57.293 42.857 0.00 0.00 38.27 1.90
2553 2741 3.606687 AGGGAAAGGTTGCGTACAATAG 58.393 45.455 0.00 0.00 38.27 1.73
2554 2742 3.262405 AGGGAAAGGTTGCGTACAATAGA 59.738 43.478 0.00 0.00 38.27 1.98
2555 2743 3.373130 GGGAAAGGTTGCGTACAATAGAC 59.627 47.826 0.00 0.00 38.27 2.59
2556 2744 3.373130 GGAAAGGTTGCGTACAATAGACC 59.627 47.826 0.00 0.00 38.27 3.85
2557 2745 2.685850 AGGTTGCGTACAATAGACCC 57.314 50.000 0.00 0.00 38.27 4.46
2558 2746 1.903860 AGGTTGCGTACAATAGACCCA 59.096 47.619 0.00 0.00 38.27 4.51
2559 2747 2.303600 AGGTTGCGTACAATAGACCCAA 59.696 45.455 0.00 0.00 38.27 4.12
2560 2748 3.075884 GGTTGCGTACAATAGACCCAAA 58.924 45.455 0.00 0.00 38.27 3.28
2561 2749 3.126343 GGTTGCGTACAATAGACCCAAAG 59.874 47.826 0.00 0.00 38.27 2.77
2562 2750 3.688694 TGCGTACAATAGACCCAAAGT 57.311 42.857 0.00 0.00 0.00 2.66
2563 2751 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
2564 2752 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
2565 2753 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
2570 2758 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2571 2759 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2572 2760 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2573 2761 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2574 2762 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2575 2763 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2576 2764 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2577 2765 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2578 2766 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2585 2773 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
2612 2800 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
2613 2801 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
2614 2802 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
2615 2803 2.438434 GCTACATGCACCGGGCTT 60.438 61.111 6.32 1.56 45.15 4.35
2616 2804 2.472909 GCTACATGCACCGGGCTTC 61.473 63.158 6.32 0.00 45.15 3.86
2617 2805 1.819632 CTACATGCACCGGGCTTCC 60.820 63.158 6.32 0.00 45.15 3.46
2618 2806 3.338275 TACATGCACCGGGCTTCCC 62.338 63.158 6.32 0.00 45.15 3.97
2619 2807 4.431131 CATGCACCGGGCTTCCCT 62.431 66.667 6.32 0.00 42.67 4.20
2620 2808 3.661648 ATGCACCGGGCTTCCCTT 61.662 61.111 6.32 0.00 42.67 3.95
2621 2809 3.224007 ATGCACCGGGCTTCCCTTT 62.224 57.895 6.32 0.00 42.67 3.11
2622 2810 2.600470 GCACCGGGCTTCCCTTTT 60.600 61.111 6.32 0.00 42.67 2.27
2623 2811 2.207229 GCACCGGGCTTCCCTTTTT 61.207 57.895 6.32 0.00 42.67 1.94
2735 2935 5.186215 TGCATGTGATTGTTCATGATTTCCT 59.814 36.000 0.00 0.00 42.52 3.36
2736 2936 5.518847 GCATGTGATTGTTCATGATTTCCTG 59.481 40.000 0.00 0.00 42.52 3.86
2759 2975 6.811954 TGAAAGTTAAACAACCCAAGGAATC 58.188 36.000 0.00 0.00 0.00 2.52
2798 3014 7.891498 AATTGTGTTATCTTACCCAATACCC 57.109 36.000 0.00 0.00 0.00 3.69
2801 3017 6.361433 TGTGTTATCTTACCCAATACCCATG 58.639 40.000 0.00 0.00 0.00 3.66
2802 3018 5.240844 GTGTTATCTTACCCAATACCCATGC 59.759 44.000 0.00 0.00 0.00 4.06
2804 3020 3.290948 TCTTACCCAATACCCATGCAC 57.709 47.619 0.00 0.00 0.00 4.57
2805 3021 1.946768 CTTACCCAATACCCATGCACG 59.053 52.381 0.00 0.00 0.00 5.34
2807 3023 1.077068 CCCAATACCCATGCACGGT 60.077 57.895 11.81 11.81 37.40 4.83
2808 3024 0.682855 CCCAATACCCATGCACGGTT 60.683 55.000 12.33 0.00 34.66 4.44
2809 3025 0.738389 CCAATACCCATGCACGGTTC 59.262 55.000 12.33 0.00 34.66 3.62
2810 3026 1.458398 CAATACCCATGCACGGTTCA 58.542 50.000 12.33 0.00 34.66 3.18
2835 3051 4.994852 TCTAATTTTCAGGAAGTGGTGTCG 59.005 41.667 0.00 0.00 0.00 4.35
2859 3075 1.238439 ACGTGTTGCTTGATGAAGGG 58.762 50.000 0.00 0.00 0.00 3.95
2990 3206 7.860872 CACTGTAATAACTTGAAACTTTCCCAC 59.139 37.037 0.00 0.00 0.00 4.61
2993 3209 8.410141 TGTAATAACTTGAAACTTTCCCACAAG 58.590 33.333 0.00 0.00 42.11 3.16
3036 3252 7.332926 GCGATCTGTTTTCTGATACCATGATAT 59.667 37.037 0.00 0.00 38.33 1.63
3052 3268 7.008440 CCATGATATATGGTTTCGTGCTATG 57.992 40.000 0.00 0.00 34.56 2.23
3055 3271 8.886719 CATGATATATGGTTTCGTGCTATGAAT 58.113 33.333 0.00 0.00 0.00 2.57
3056 3272 8.255394 TGATATATGGTTTCGTGCTATGAATG 57.745 34.615 0.00 0.00 0.00 2.67
3133 3349 2.487775 TGCTGGAAAATAGAGCCCCTA 58.512 47.619 0.00 0.00 31.31 3.53
3250 3466 6.547141 CCATTACCTTGGATCAGCTTATTGAA 59.453 38.462 0.00 0.00 39.25 2.69
3386 3602 1.606885 AAGCAATGGGGATGCCAACG 61.607 55.000 5.30 0.00 44.91 4.10
3510 3726 4.349636 TGGAAGTTCCCTTAGATTGACACA 59.650 41.667 19.42 0.00 35.03 3.72
3511 3727 5.163141 TGGAAGTTCCCTTAGATTGACACAA 60.163 40.000 19.42 0.00 35.03 3.33
3531 3747 4.141390 ACAAGACAATAGGGGCAGGATAAG 60.141 45.833 0.00 0.00 0.00 1.73
3793 4014 4.077108 TGAAGTTGCTTGATCTTCATGCT 58.923 39.130 14.12 0.00 44.77 3.79
3814 4035 3.490759 CGTGCTTGGCGTGCCTAG 61.491 66.667 16.52 16.52 40.94 3.02
3857 4085 9.377312 ATTTTAACAAAATTACAGTGTTGCTGT 57.623 25.926 0.00 5.21 44.35 4.40
3933 4161 4.657504 AGATGAACCAGATGCCAATCTCTA 59.342 41.667 0.00 0.00 41.43 2.43
4015 4244 5.480422 GGAAAGCCTCCAATTCCTTTCTTTA 59.520 40.000 10.59 0.00 44.67 1.85
4119 4348 2.124570 GCAGCCATGTCCGACCAT 60.125 61.111 0.00 0.00 0.00 3.55
4269 4498 4.295199 GGTCCACCCCCACCAACC 62.295 72.222 0.00 0.00 32.33 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.082354 ACCTACTTCTTAAATGACGCTCGT 60.082 41.667 0.00 0.00 0.00 4.18
10 11 4.421948 CGACCTACTTCTTAAATGACGCT 58.578 43.478 0.00 0.00 0.00 5.07
18 19 3.084039 TCTTCGCCGACCTACTTCTTAA 58.916 45.455 0.00 0.00 0.00 1.85
19 20 2.681848 CTCTTCGCCGACCTACTTCTTA 59.318 50.000 0.00 0.00 0.00 2.10
26 27 1.376424 ACGTCTCTTCGCCGACCTA 60.376 57.895 0.00 0.00 0.00 3.08
30 31 2.254350 CACACGTCTCTTCGCCGA 59.746 61.111 0.00 0.00 0.00 5.54
44 45 4.590553 TGGTCCAGGGGAGGCACA 62.591 66.667 0.00 0.00 29.39 4.57
166 167 2.986306 GCTTCTTCCCCGACGTCGA 61.986 63.158 37.65 16.87 43.02 4.20
221 222 2.350895 CGCCACCTTCCCACATCA 59.649 61.111 0.00 0.00 0.00 3.07
224 225 3.050354 AACACGCCACCTTCCCACA 62.050 57.895 0.00 0.00 0.00 4.17
241 242 1.211567 CCCACATACCTCCCCCACAA 61.212 60.000 0.00 0.00 0.00 3.33
244 245 1.618143 CACCCACATACCTCCCCCA 60.618 63.158 0.00 0.00 0.00 4.96
264 265 1.133761 TGATGCCCTCGCTAGTAGTCT 60.134 52.381 0.00 0.00 35.36 3.24
269 270 0.461961 GTTCTGATGCCCTCGCTAGT 59.538 55.000 0.00 0.00 35.36 2.57
272 273 1.220206 CAGTTCTGATGCCCTCGCT 59.780 57.895 0.00 0.00 35.36 4.93
367 373 4.779733 TCCTCCCTCTGACCCGCC 62.780 72.222 0.00 0.00 0.00 6.13
439 456 3.136123 CCGGGCGACTCGTTCCTA 61.136 66.667 0.00 0.00 0.00 2.94
456 473 3.533691 CGTCCGCTCTTCGTTCGC 61.534 66.667 0.00 0.00 36.19 4.70
465 482 4.702081 ACAGACGTGCGTCCGCTC 62.702 66.667 19.35 8.41 45.59 5.03
475 492 2.877043 ACGTTGGTCTAAACAGACGT 57.123 45.000 0.00 0.00 40.96 4.34
476 493 6.317088 TCTAATACGTTGGTCTAAACAGACG 58.683 40.000 0.00 0.00 39.57 4.18
501 518 8.076781 TCGGATCAAAACAAACATAAAAATCGA 58.923 29.630 0.00 0.00 0.00 3.59
505 522 7.043325 CCGTTCGGATCAAAACAAACATAAAAA 60.043 33.333 5.19 0.00 0.00 1.94
526 543 4.651008 TCGTCCGTGTGCCCGTTC 62.651 66.667 0.00 0.00 0.00 3.95
532 549 1.908066 GACCCATTTCGTCCGTGTGC 61.908 60.000 0.00 0.00 0.00 4.57
566 585 8.899771 CCGTGAGACCTGGTTTTATATAATTTT 58.100 33.333 0.00 0.00 0.00 1.82
567 586 8.050930 ACCGTGAGACCTGGTTTTATATAATTT 58.949 33.333 0.00 0.00 29.87 1.82
568 587 7.571025 ACCGTGAGACCTGGTTTTATATAATT 58.429 34.615 0.00 0.00 29.87 1.40
569 588 7.133133 ACCGTGAGACCTGGTTTTATATAAT 57.867 36.000 0.00 0.00 29.87 1.28
570 589 6.549433 ACCGTGAGACCTGGTTTTATATAA 57.451 37.500 0.00 0.00 29.87 0.98
571 590 6.549433 AACCGTGAGACCTGGTTTTATATA 57.451 37.500 0.00 0.00 43.23 0.86
572 591 5.431179 AACCGTGAGACCTGGTTTTATAT 57.569 39.130 0.00 0.00 43.23 0.86
573 592 4.895668 AACCGTGAGACCTGGTTTTATA 57.104 40.909 0.00 0.00 43.23 0.98
574 593 3.782656 AACCGTGAGACCTGGTTTTAT 57.217 42.857 0.00 0.00 43.23 1.40
575 594 4.141756 TGTTAACCGTGAGACCTGGTTTTA 60.142 41.667 0.00 0.00 43.23 1.52
576 595 3.208594 GTTAACCGTGAGACCTGGTTTT 58.791 45.455 0.00 0.00 43.23 2.43
577 596 2.171027 TGTTAACCGTGAGACCTGGTTT 59.829 45.455 0.00 0.00 43.23 3.27
579 598 1.343465 CTGTTAACCGTGAGACCTGGT 59.657 52.381 0.00 0.00 37.68 4.00
580 599 1.337823 CCTGTTAACCGTGAGACCTGG 60.338 57.143 2.48 0.00 0.00 4.45
581 600 1.343465 ACCTGTTAACCGTGAGACCTG 59.657 52.381 2.48 0.00 0.00 4.00
582 601 1.343465 CACCTGTTAACCGTGAGACCT 59.657 52.381 14.67 0.00 0.00 3.85
583 602 1.342174 TCACCTGTTAACCGTGAGACC 59.658 52.381 17.26 0.00 32.85 3.85
584 603 2.806608 TCACCTGTTAACCGTGAGAC 57.193 50.000 17.26 0.00 32.85 3.36
585 604 3.460103 GTTTCACCTGTTAACCGTGAGA 58.540 45.455 19.22 14.91 37.78 3.27
586 605 2.546789 GGTTTCACCTGTTAACCGTGAG 59.453 50.000 19.22 5.09 37.78 3.51
587 606 2.563702 GGTTTCACCTGTTAACCGTGA 58.436 47.619 17.26 17.26 34.73 4.35
592 611 8.532923 CCGTTAGGATAGGTTTCACCTGTTAAC 61.533 44.444 5.65 0.00 44.77 2.01
593 612 6.574859 CCGTTAGGATAGGTTTCACCTGTTAA 60.575 42.308 5.65 0.00 44.77 2.01
594 613 5.105228 CCGTTAGGATAGGTTTCACCTGTTA 60.105 44.000 5.65 0.00 44.77 2.41
595 614 4.323257 CCGTTAGGATAGGTTTCACCTGTT 60.323 45.833 5.65 0.00 44.77 3.16
596 615 3.197116 CCGTTAGGATAGGTTTCACCTGT 59.803 47.826 5.65 0.00 44.77 4.00
597 616 3.449737 TCCGTTAGGATAGGTTTCACCTG 59.550 47.826 5.65 0.00 45.24 4.00
598 617 3.716431 TCCGTTAGGATAGGTTTCACCT 58.284 45.455 0.12 0.12 46.52 4.00
611 630 2.074547 AACACGTGTCATCCGTTAGG 57.925 50.000 23.61 0.00 36.17 2.69
612 631 4.860352 TGAATAACACGTGTCATCCGTTAG 59.140 41.667 23.61 0.00 36.17 2.34
613 632 4.622313 GTGAATAACACGTGTCATCCGTTA 59.378 41.667 23.61 9.12 39.78 3.18
614 633 3.430895 GTGAATAACACGTGTCATCCGTT 59.569 43.478 23.61 6.86 39.78 4.44
615 634 2.991190 GTGAATAACACGTGTCATCCGT 59.009 45.455 23.61 7.67 39.78 4.69
616 635 3.634730 GTGAATAACACGTGTCATCCG 57.365 47.619 23.61 0.00 39.78 4.18
627 646 7.660112 AGATGCTTTGTGATTTGTGAATAACA 58.340 30.769 0.00 0.00 35.28 2.41
628 647 9.624697 TTAGATGCTTTGTGATTTGTGAATAAC 57.375 29.630 0.00 0.00 0.00 1.89
631 650 8.746530 AGATTAGATGCTTTGTGATTTGTGAAT 58.253 29.630 0.00 0.00 0.00 2.57
632 651 8.114331 AGATTAGATGCTTTGTGATTTGTGAA 57.886 30.769 0.00 0.00 0.00 3.18
633 652 7.609146 AGAGATTAGATGCTTTGTGATTTGTGA 59.391 33.333 0.00 0.00 0.00 3.58
634 653 7.759465 AGAGATTAGATGCTTTGTGATTTGTG 58.241 34.615 0.00 0.00 0.00 3.33
635 654 7.934855 AGAGATTAGATGCTTTGTGATTTGT 57.065 32.000 0.00 0.00 0.00 2.83
636 655 7.914346 GGAAGAGATTAGATGCTTTGTGATTTG 59.086 37.037 0.00 0.00 0.00 2.32
637 656 7.067981 GGGAAGAGATTAGATGCTTTGTGATTT 59.932 37.037 0.00 0.00 0.00 2.17
638 657 6.545298 GGGAAGAGATTAGATGCTTTGTGATT 59.455 38.462 0.00 0.00 0.00 2.57
639 658 6.060788 GGGAAGAGATTAGATGCTTTGTGAT 58.939 40.000 0.00 0.00 0.00 3.06
640 659 5.431765 GGGAAGAGATTAGATGCTTTGTGA 58.568 41.667 0.00 0.00 0.00 3.58
641 660 4.272018 CGGGAAGAGATTAGATGCTTTGTG 59.728 45.833 0.00 0.00 0.00 3.33
642 661 4.080863 ACGGGAAGAGATTAGATGCTTTGT 60.081 41.667 0.00 0.00 0.00 2.83
643 662 4.272018 CACGGGAAGAGATTAGATGCTTTG 59.728 45.833 0.00 0.00 0.00 2.77
644 663 4.446371 CACGGGAAGAGATTAGATGCTTT 58.554 43.478 0.00 0.00 0.00 3.51
645 664 3.742640 GCACGGGAAGAGATTAGATGCTT 60.743 47.826 0.00 0.00 0.00 3.91
646 665 2.224161 GCACGGGAAGAGATTAGATGCT 60.224 50.000 0.00 0.00 0.00 3.79
647 666 2.139118 GCACGGGAAGAGATTAGATGC 58.861 52.381 0.00 0.00 0.00 3.91
648 667 3.459232 TGCACGGGAAGAGATTAGATG 57.541 47.619 0.00 0.00 0.00 2.90
649 668 4.696479 AATGCACGGGAAGAGATTAGAT 57.304 40.909 0.00 0.00 0.00 1.98
650 669 4.501571 GCTAATGCACGGGAAGAGATTAGA 60.502 45.833 0.00 0.00 39.41 2.10
651 670 3.743396 GCTAATGCACGGGAAGAGATTAG 59.257 47.826 0.00 0.00 39.41 1.73
652 671 3.133901 TGCTAATGCACGGGAAGAGATTA 59.866 43.478 0.00 0.00 45.31 1.75
653 672 2.092968 TGCTAATGCACGGGAAGAGATT 60.093 45.455 0.00 0.00 45.31 2.40
654 673 1.486310 TGCTAATGCACGGGAAGAGAT 59.514 47.619 0.00 0.00 45.31 2.75
655 674 0.901827 TGCTAATGCACGGGAAGAGA 59.098 50.000 0.00 0.00 45.31 3.10
656 675 3.458872 TGCTAATGCACGGGAAGAG 57.541 52.632 0.00 0.00 45.31 2.85
666 685 7.513132 GGAAAAGAATTCAGTTTTGCTAATGC 58.487 34.615 8.44 0.00 32.84 3.56
667 686 7.148755 CCGGAAAAGAATTCAGTTTTGCTAATG 60.149 37.037 16.77 6.51 33.27 1.90
668 687 6.868339 CCGGAAAAGAATTCAGTTTTGCTAAT 59.132 34.615 16.77 0.00 33.27 1.73
669 688 6.212955 CCGGAAAAGAATTCAGTTTTGCTAA 58.787 36.000 16.77 0.00 33.27 3.09
670 689 5.768317 CCGGAAAAGAATTCAGTTTTGCTA 58.232 37.500 16.77 0.00 33.27 3.49
671 690 4.620982 CCGGAAAAGAATTCAGTTTTGCT 58.379 39.130 16.77 0.00 33.27 3.91
672 691 3.184379 GCCGGAAAAGAATTCAGTTTTGC 59.816 43.478 5.05 10.59 32.40 3.68
673 692 4.367450 TGCCGGAAAAGAATTCAGTTTTG 58.633 39.130 5.05 4.96 0.00 2.44
674 693 4.664150 TGCCGGAAAAGAATTCAGTTTT 57.336 36.364 5.05 6.67 0.00 2.43
675 694 4.099419 ACTTGCCGGAAAAGAATTCAGTTT 59.901 37.500 20.57 7.49 0.00 2.66
676 695 3.636764 ACTTGCCGGAAAAGAATTCAGTT 59.363 39.130 20.57 0.52 0.00 3.16
677 696 3.222603 ACTTGCCGGAAAAGAATTCAGT 58.777 40.909 20.57 0.00 0.00 3.41
678 697 3.923017 ACTTGCCGGAAAAGAATTCAG 57.077 42.857 20.57 0.00 0.00 3.02
679 698 3.243704 CCAACTTGCCGGAAAAGAATTCA 60.244 43.478 20.57 0.00 0.00 2.57
680 699 3.005367 TCCAACTTGCCGGAAAAGAATTC 59.995 43.478 20.57 0.00 0.00 2.17
681 700 2.962421 TCCAACTTGCCGGAAAAGAATT 59.038 40.909 20.57 6.00 0.00 2.17
682 701 2.558359 CTCCAACTTGCCGGAAAAGAAT 59.442 45.455 20.57 8.74 0.00 2.40
683 702 1.953686 CTCCAACTTGCCGGAAAAGAA 59.046 47.619 20.57 5.68 0.00 2.52
684 703 1.133915 ACTCCAACTTGCCGGAAAAGA 60.134 47.619 20.57 4.40 0.00 2.52
685 704 1.318576 ACTCCAACTTGCCGGAAAAG 58.681 50.000 5.05 11.02 0.00 2.27
686 705 1.407258 CAACTCCAACTTGCCGGAAAA 59.593 47.619 5.05 0.00 0.00 2.29
687 706 1.028905 CAACTCCAACTTGCCGGAAA 58.971 50.000 5.05 0.00 0.00 3.13
688 707 1.452145 GCAACTCCAACTTGCCGGAA 61.452 55.000 5.05 0.00 38.48 4.30
689 708 1.896660 GCAACTCCAACTTGCCGGA 60.897 57.895 5.05 0.00 38.48 5.14
690 709 1.856265 GAGCAACTCCAACTTGCCGG 61.856 60.000 0.00 0.00 44.36 6.13
695 714 4.781934 AGTGTTAAGAGCAACTCCAACTT 58.218 39.130 9.67 0.00 31.44 2.66
703 722 3.740115 TCCCAAGAGTGTTAAGAGCAAC 58.260 45.455 0.00 0.00 0.00 4.17
706 725 3.127721 GCAATCCCAAGAGTGTTAAGAGC 59.872 47.826 0.00 0.00 40.24 4.09
823 860 2.470821 CGCTCCGGTAATCTTCGATTT 58.529 47.619 0.00 0.00 0.00 2.17
845 882 2.574399 GGACTGGAGGACGAGCAC 59.426 66.667 0.00 0.00 0.00 4.40
903 940 2.802719 CCTCGGGAAAAATGGGAGAAA 58.197 47.619 0.00 0.00 0.00 2.52
916 953 2.032620 GAACAAGATCTAGCCTCGGGA 58.967 52.381 0.00 0.00 0.00 5.14
933 970 1.545841 AGCCTCGGGAAAAATGGAAC 58.454 50.000 0.00 0.00 0.00 3.62
934 971 2.574369 TCTAGCCTCGGGAAAAATGGAA 59.426 45.455 0.00 0.00 0.00 3.53
935 972 2.193127 TCTAGCCTCGGGAAAAATGGA 58.807 47.619 0.00 0.00 0.00 3.41
936 973 2.710096 TCTAGCCTCGGGAAAAATGG 57.290 50.000 0.00 0.00 0.00 3.16
937 974 4.078639 AGATCTAGCCTCGGGAAAAATG 57.921 45.455 0.00 0.00 0.00 2.32
938 975 4.080299 ACAAGATCTAGCCTCGGGAAAAAT 60.080 41.667 0.00 0.00 0.00 1.82
939 976 3.263425 ACAAGATCTAGCCTCGGGAAAAA 59.737 43.478 0.00 0.00 0.00 1.94
940 977 2.838202 ACAAGATCTAGCCTCGGGAAAA 59.162 45.455 0.00 0.00 0.00 2.29
941 978 2.467880 ACAAGATCTAGCCTCGGGAAA 58.532 47.619 0.00 0.00 0.00 3.13
942 979 2.160721 ACAAGATCTAGCCTCGGGAA 57.839 50.000 0.00 0.00 0.00 3.97
943 980 2.032620 GAACAAGATCTAGCCTCGGGA 58.967 52.381 0.00 0.00 0.00 5.14
944 981 1.069358 GGAACAAGATCTAGCCTCGGG 59.931 57.143 0.00 0.00 0.00 5.14
945 982 1.757118 TGGAACAAGATCTAGCCTCGG 59.243 52.381 0.00 0.00 31.92 4.63
946 983 2.801342 GCTGGAACAAGATCTAGCCTCG 60.801 54.545 0.00 0.00 45.21 4.63
947 984 2.832563 GCTGGAACAAGATCTAGCCTC 58.167 52.381 0.00 0.00 45.21 4.70
948 985 2.998316 GCTGGAACAAGATCTAGCCT 57.002 50.000 0.00 0.00 45.21 4.58
950 987 0.933796 GCGCTGGAACAAGATCTAGC 59.066 55.000 0.00 5.77 46.82 3.42
951 988 2.299993 TGCGCTGGAACAAGATCTAG 57.700 50.000 9.73 0.00 38.70 2.43
952 989 2.988010 ATGCGCTGGAACAAGATCTA 57.012 45.000 9.73 0.00 38.70 1.98
953 990 2.119801 AATGCGCTGGAACAAGATCT 57.880 45.000 9.73 0.00 38.70 2.75
995 1032 6.957631 TCTTGATTACTGCTTCCCATTAGAA 58.042 36.000 0.00 0.00 0.00 2.10
1079 1116 3.368948 GCTCTGAATCTTATCCGGGATCC 60.369 52.174 13.97 1.92 0.00 3.36
1100 1137 0.877743 GCAACCAACCTTGAGAGAGC 59.122 55.000 0.00 0.00 0.00 4.09
1139 1176 4.563580 CCCCATCGATCGATAACAAAGGAT 60.564 45.833 28.94 2.28 32.93 3.24
1158 1196 0.540830 CCCAACCAATTTCGACCCCA 60.541 55.000 0.00 0.00 0.00 4.96
1176 1214 5.156355 CAAACATGTCAGTTTACATCTGCC 58.844 41.667 0.00 0.00 39.55 4.85
1193 1231 6.653020 TGTAGCTATCACAAGATCCAAACAT 58.347 36.000 0.00 0.00 35.67 2.71
1257 1295 2.584492 GCATTTGTGCCTTGATACCC 57.416 50.000 0.00 0.00 0.00 3.69
1279 1317 0.827368 GCTACCCTCACCTTCTCTGG 59.173 60.000 0.00 0.00 0.00 3.86
1478 1648 8.987890 CCTTGTGTCCAATTTAATTTTCGAAAT 58.012 29.630 12.12 0.00 0.00 2.17
1510 1683 8.547173 ACTCAGAGATGTTCCAATAAGAAGAAT 58.453 33.333 3.79 0.00 0.00 2.40
1605 1781 8.871125 AGATAATGTAAGGTTAGGACATCGAAT 58.129 33.333 0.00 0.00 32.67 3.34
1807 1985 2.054021 TCACAAGTCCATTCCACCTCA 58.946 47.619 0.00 0.00 0.00 3.86
1828 2006 2.691409 TCAAGCAGATCCCTTAACGG 57.309 50.000 0.00 0.00 0.00 4.44
1829 2007 2.289002 GCATCAAGCAGATCCCTTAACG 59.711 50.000 0.00 0.00 44.79 3.18
1843 2021 5.180868 AGCAACTTTAGAACAGAGCATCAAG 59.819 40.000 0.00 0.00 37.82 3.02
1892 2070 9.013229 TCCGTATAACTAGTAGAACAACAGAAA 57.987 33.333 3.59 0.00 0.00 2.52
1943 2123 8.046708 ACCACTTTGCTCTATACAATGACATAA 58.953 33.333 0.00 0.00 0.00 1.90
1944 2124 7.564793 ACCACTTTGCTCTATACAATGACATA 58.435 34.615 0.00 0.00 0.00 2.29
1955 2135 4.623932 TGACAGAACCACTTTGCTCTAT 57.376 40.909 0.00 0.00 0.00 1.98
1965 2145 2.094545 GGGAATTGCATGACAGAACCAC 60.095 50.000 0.00 0.00 0.00 4.16
1967 2147 1.478105 GGGGAATTGCATGACAGAACC 59.522 52.381 0.00 0.00 0.00 3.62
1975 2155 2.758736 TTTTTCCGGGGAATTGCATG 57.241 45.000 0.00 0.00 33.79 4.06
1998 2178 1.190643 TTTTCCGGGGAATTGCATCC 58.809 50.000 0.00 0.00 38.86 3.51
2064 2245 3.567164 CAGGCCAGCCAGTTAATTATCTG 59.433 47.826 12.03 14.25 38.92 2.90
2079 2260 0.883833 CTTACAACCTTGCAGGCCAG 59.116 55.000 5.01 0.00 39.63 4.85
2090 2271 8.774586 CAGGATACATTTATAGCACTTACAACC 58.225 37.037 0.00 0.00 41.41 3.77
2091 2272 9.542462 TCAGGATACATTTATAGCACTTACAAC 57.458 33.333 0.00 0.00 41.41 3.32
2093 2274 9.764363 CTTCAGGATACATTTATAGCACTTACA 57.236 33.333 0.00 0.00 41.41 2.41
2094 2275 9.765795 ACTTCAGGATACATTTATAGCACTTAC 57.234 33.333 0.00 0.00 41.41 2.34
2095 2276 9.982651 GACTTCAGGATACATTTATAGCACTTA 57.017 33.333 0.00 0.00 41.41 2.24
2109 2290 6.402334 CGACATACCGATAGACTTCAGGATAC 60.402 46.154 0.00 0.00 39.76 2.24
2162 2350 1.201414 GAACACATAACTTTGCGGGGG 59.799 52.381 0.00 0.00 0.00 5.40
2179 2367 2.743928 CTGCGCCAGGACAGGAAC 60.744 66.667 4.18 0.00 0.00 3.62
2180 2368 3.241530 ACTGCGCCAGGACAGGAA 61.242 61.111 4.18 0.00 38.25 3.36
2183 2371 2.449031 TTACCACTGCGCCAGGACAG 62.449 60.000 15.60 8.11 39.86 3.51
2184 2372 2.046009 TTTACCACTGCGCCAGGACA 62.046 55.000 15.60 1.79 35.51 4.02
2185 2373 1.298859 CTTTACCACTGCGCCAGGAC 61.299 60.000 15.60 0.00 35.51 3.85
2186 2374 1.003839 CTTTACCACTGCGCCAGGA 60.004 57.895 15.60 0.00 35.51 3.86
2187 2375 2.690778 GCTTTACCACTGCGCCAGG 61.691 63.158 4.18 6.64 35.51 4.45
2188 2376 1.672356 AGCTTTACCACTGCGCCAG 60.672 57.895 4.18 4.99 37.52 4.85
2189 2377 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2190 2378 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2194 2382 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2195 2383 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2196 2384 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2197 2385 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2198 2386 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2199 2387 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2200 2388 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2201 2389 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2202 2390 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2203 2391 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2204 2392 2.282040 AGGTCACAAGGCAGCAGC 60.282 61.111 0.00 0.00 41.10 5.25
2205 2393 1.970114 CCAGGTCACAAGGCAGCAG 60.970 63.158 0.00 0.00 0.00 4.24
2206 2394 1.993701 TTCCAGGTCACAAGGCAGCA 61.994 55.000 0.00 0.00 0.00 4.41
2207 2395 0.823356 TTTCCAGGTCACAAGGCAGC 60.823 55.000 0.00 0.00 0.00 5.25
2208 2396 1.915141 ATTTCCAGGTCACAAGGCAG 58.085 50.000 0.00 0.00 0.00 4.85
2209 2397 3.737559 ATATTTCCAGGTCACAAGGCA 57.262 42.857 0.00 0.00 0.00 4.75
2210 2398 3.883489 GGTATATTTCCAGGTCACAAGGC 59.117 47.826 0.00 0.00 0.00 4.35
2211 2399 5.126067 CAGGTATATTTCCAGGTCACAAGG 58.874 45.833 0.00 0.00 0.00 3.61
2212 2400 5.126067 CCAGGTATATTTCCAGGTCACAAG 58.874 45.833 0.00 0.00 0.00 3.16
2213 2401 4.627741 GCCAGGTATATTTCCAGGTCACAA 60.628 45.833 8.88 0.00 34.66 3.33
2214 2402 3.118038 GCCAGGTATATTTCCAGGTCACA 60.118 47.826 8.88 0.00 34.66 3.58
2215 2403 3.477530 GCCAGGTATATTTCCAGGTCAC 58.522 50.000 8.88 0.00 34.66 3.67
2216 2404 2.441750 GGCCAGGTATATTTCCAGGTCA 59.558 50.000 0.00 0.00 36.46 4.02
2217 2405 2.441750 TGGCCAGGTATATTTCCAGGTC 59.558 50.000 0.00 5.96 36.88 3.85
2218 2406 2.498441 TGGCCAGGTATATTTCCAGGT 58.502 47.619 0.00 0.00 34.66 4.00
2219 2407 3.562176 GGATGGCCAGGTATATTTCCAGG 60.562 52.174 13.05 4.45 35.18 4.45
2220 2408 3.562176 GGGATGGCCAGGTATATTTCCAG 60.562 52.174 13.05 0.00 35.15 3.86
2221 2409 2.378547 GGGATGGCCAGGTATATTTCCA 59.621 50.000 13.05 0.00 35.15 3.53
2222 2410 2.649816 AGGGATGGCCAGGTATATTTCC 59.350 50.000 13.05 10.63 35.15 3.13
2223 2411 4.082125 CAAGGGATGGCCAGGTATATTTC 58.918 47.826 13.05 0.00 35.15 2.17
2224 2412 3.181418 CCAAGGGATGGCCAGGTATATTT 60.181 47.826 13.05 0.00 43.80 1.40
2225 2413 2.379907 CCAAGGGATGGCCAGGTATATT 59.620 50.000 13.05 0.00 43.80 1.28
2226 2414 1.995542 CCAAGGGATGGCCAGGTATAT 59.004 52.381 13.05 0.00 43.80 0.86
2227 2415 1.444933 CCAAGGGATGGCCAGGTATA 58.555 55.000 13.05 0.00 43.80 1.47
2228 2416 2.244487 CCAAGGGATGGCCAGGTAT 58.756 57.895 13.05 0.00 43.80 2.73
2229 2417 3.754043 CCAAGGGATGGCCAGGTA 58.246 61.111 13.05 0.00 43.80 3.08
2253 2441 0.679640 TTGCATCGGGCTTGGTTAGG 60.680 55.000 0.00 0.00 45.15 2.69
2254 2442 1.173043 TTTGCATCGGGCTTGGTTAG 58.827 50.000 0.00 0.00 45.15 2.34
2255 2443 1.621992 TTTTGCATCGGGCTTGGTTA 58.378 45.000 0.00 0.00 45.15 2.85
2256 2444 0.755686 TTTTTGCATCGGGCTTGGTT 59.244 45.000 0.00 0.00 45.15 3.67
2257 2445 2.435418 TTTTTGCATCGGGCTTGGT 58.565 47.368 0.00 0.00 45.15 3.67
2274 2462 2.931921 AGGTCCGGGCCTGTTTTT 59.068 55.556 31.20 0.00 37.50 1.94
2304 2492 1.401905 CCTGATTTTTAGGCCTGACGC 59.598 52.381 17.99 0.00 0.00 5.19
2312 2500 2.967599 GCTTGGGCCTGATTTTTAGG 57.032 50.000 4.53 0.00 38.39 2.69
2331 2519 3.561120 TTTACACTGGCAGGCCGGG 62.561 63.158 22.36 12.59 46.47 5.73
2333 2521 1.875963 CTTTTACACTGGCAGGCCG 59.124 57.895 20.34 9.32 39.42 6.13
2334 2522 1.586541 GCTTTTACACTGGCAGGCC 59.413 57.895 20.34 2.62 0.00 5.19
2335 2523 0.895559 AGGCTTTTACACTGGCAGGC 60.896 55.000 20.34 10.20 0.00 4.85
2336 2524 0.883833 CAGGCTTTTACACTGGCAGG 59.116 55.000 20.34 10.34 0.00 4.85
2337 2525 0.242017 GCAGGCTTTTACACTGGCAG 59.758 55.000 14.16 14.16 32.98 4.85
2338 2526 2.340427 GCAGGCTTTTACACTGGCA 58.660 52.632 0.00 0.00 32.98 4.92
2340 2528 0.883833 CTGGCAGGCTTTTACACTGG 59.116 55.000 6.61 0.00 32.98 4.00
2341 2529 1.537202 GTCTGGCAGGCTTTTACACTG 59.463 52.381 12.82 0.00 35.40 3.66
2342 2530 1.545651 GGTCTGGCAGGCTTTTACACT 60.546 52.381 19.90 0.00 0.00 3.55
2343 2531 0.881796 GGTCTGGCAGGCTTTTACAC 59.118 55.000 19.90 4.58 0.00 2.90
2344 2532 0.771127 AGGTCTGGCAGGCTTTTACA 59.229 50.000 19.90 0.00 0.00 2.41
2345 2533 1.541588 CAAGGTCTGGCAGGCTTTTAC 59.458 52.381 19.90 6.13 0.00 2.01
2346 2534 1.547675 CCAAGGTCTGGCAGGCTTTTA 60.548 52.381 19.90 0.00 38.76 1.52
2347 2535 0.829182 CCAAGGTCTGGCAGGCTTTT 60.829 55.000 19.90 11.05 38.76 2.27
2348 2536 1.228675 CCAAGGTCTGGCAGGCTTT 60.229 57.895 19.90 15.50 38.76 3.51
2349 2537 2.437897 CCAAGGTCTGGCAGGCTT 59.562 61.111 19.90 8.87 38.76 4.35
2350 2538 3.655211 CCCAAGGTCTGGCAGGCT 61.655 66.667 19.90 1.89 44.90 4.58
2355 2543 4.748144 CCTGGCCCAAGGTCTGGC 62.748 72.222 0.00 0.00 44.90 4.85
2357 2545 4.748144 GGCCTGGCCCAAGGTCTG 62.748 72.222 27.77 0.00 44.06 3.51
2367 2555 1.359459 CGTTAACGAAGAGGCCTGGC 61.359 60.000 23.35 11.05 43.02 4.85
2368 2556 1.359459 GCGTTAACGAAGAGGCCTGG 61.359 60.000 31.03 0.00 43.02 4.45
2369 2557 1.683790 CGCGTTAACGAAGAGGCCTG 61.684 60.000 31.03 0.00 43.02 4.85
2370 2558 1.445582 CGCGTTAACGAAGAGGCCT 60.446 57.895 31.03 3.86 43.02 5.19
2371 2559 3.078560 CGCGTTAACGAAGAGGCC 58.921 61.111 31.03 10.53 43.02 5.19
2372 2560 0.799534 TAGCGCGTTAACGAAGAGGC 60.800 55.000 31.03 21.88 43.02 4.70
2373 2561 1.621107 TTAGCGCGTTAACGAAGAGG 58.379 50.000 31.03 14.14 43.02 3.69
2374 2562 4.143597 CCATATTAGCGCGTTAACGAAGAG 60.144 45.833 31.03 18.07 43.02 2.85
2375 2563 3.732219 CCATATTAGCGCGTTAACGAAGA 59.268 43.478 31.03 13.86 43.02 2.87
2376 2564 3.660904 GCCATATTAGCGCGTTAACGAAG 60.661 47.826 31.03 22.74 43.02 3.79
2377 2565 2.219216 GCCATATTAGCGCGTTAACGAA 59.781 45.455 31.03 16.39 43.02 3.85
2378 2566 1.788308 GCCATATTAGCGCGTTAACGA 59.212 47.619 31.03 10.52 43.02 3.85
2379 2567 2.207041 GCCATATTAGCGCGTTAACG 57.793 50.000 23.40 23.40 43.27 3.18
2388 2576 1.675641 CCAGGCCCGCCATATTAGC 60.676 63.158 8.74 0.00 38.92 3.09
2389 2577 1.002134 CCCAGGCCCGCCATATTAG 60.002 63.158 8.74 0.00 38.92 1.73
2390 2578 3.166434 CCCAGGCCCGCCATATTA 58.834 61.111 8.74 0.00 38.92 0.98
2391 2579 4.603535 GCCCAGGCCCGCCATATT 62.604 66.667 8.74 0.00 38.92 1.28
2414 2602 1.943340 GCCTAGATTTCAAGCCCGAAG 59.057 52.381 0.00 0.00 0.00 3.79
2415 2603 1.408266 GGCCTAGATTTCAAGCCCGAA 60.408 52.381 0.00 0.00 37.66 4.30
2416 2604 0.180406 GGCCTAGATTTCAAGCCCGA 59.820 55.000 0.00 0.00 37.66 5.14
2417 2605 2.707902 GGCCTAGATTTCAAGCCCG 58.292 57.895 0.00 0.00 37.66 6.13
2419 2607 0.180406 TCGGGCCTAGATTTCAAGCC 59.820 55.000 0.84 0.00 43.09 4.35
2420 2608 1.587547 CTCGGGCCTAGATTTCAAGC 58.412 55.000 0.84 0.00 0.00 4.01
2421 2609 1.587547 GCTCGGGCCTAGATTTCAAG 58.412 55.000 9.63 0.00 0.00 3.02
2422 2610 3.780624 GCTCGGGCCTAGATTTCAA 57.219 52.632 9.63 0.00 0.00 2.69
2446 2634 4.767255 GGCCCAGCCTGACGTCAG 62.767 72.222 33.87 33.87 46.69 3.51
2489 2677 1.694169 AGGTAGACCTGGCCATGGG 60.694 63.158 20.97 16.10 46.55 4.00
2490 2678 4.073201 AGGTAGACCTGGCCATGG 57.927 61.111 5.51 13.05 46.55 3.66
2499 2687 1.964933 GAGGCTGTATCCAGGTAGACC 59.035 57.143 0.00 0.00 39.22 3.85
2500 2688 2.952116 AGAGGCTGTATCCAGGTAGAC 58.048 52.381 0.00 0.00 39.22 2.59
2501 2689 3.300388 CAAGAGGCTGTATCCAGGTAGA 58.700 50.000 0.00 0.00 39.22 2.59
2502 2690 2.224161 GCAAGAGGCTGTATCCAGGTAG 60.224 54.545 0.00 0.00 39.22 3.18
2503 2691 1.762957 GCAAGAGGCTGTATCCAGGTA 59.237 52.381 0.00 0.00 39.22 3.08
2504 2692 0.543749 GCAAGAGGCTGTATCCAGGT 59.456 55.000 0.00 0.00 39.22 4.00
2505 2693 0.543277 TGCAAGAGGCTGTATCCAGG 59.457 55.000 0.00 0.00 45.15 4.45
2506 2694 1.483827 TCTGCAAGAGGCTGTATCCAG 59.516 52.381 0.00 0.00 38.67 3.86
2507 2695 1.571955 TCTGCAAGAGGCTGTATCCA 58.428 50.000 0.00 0.00 38.67 3.41
2518 2706 4.202567 ACCTTTCCCTACATTTCTGCAAGA 60.203 41.667 0.00 0.00 44.68 3.02
2519 2707 4.082125 ACCTTTCCCTACATTTCTGCAAG 58.918 43.478 0.00 0.00 0.00 4.01
2520 2708 4.112634 ACCTTTCCCTACATTTCTGCAA 57.887 40.909 0.00 0.00 0.00 4.08
2521 2709 3.806949 ACCTTTCCCTACATTTCTGCA 57.193 42.857 0.00 0.00 0.00 4.41
2522 2710 3.367395 GCAACCTTTCCCTACATTTCTGC 60.367 47.826 0.00 0.00 0.00 4.26
2523 2711 3.119849 CGCAACCTTTCCCTACATTTCTG 60.120 47.826 0.00 0.00 0.00 3.02
2524 2712 3.081804 CGCAACCTTTCCCTACATTTCT 58.918 45.455 0.00 0.00 0.00 2.52
2525 2713 2.817844 ACGCAACCTTTCCCTACATTTC 59.182 45.455 0.00 0.00 0.00 2.17
2526 2714 2.871453 ACGCAACCTTTCCCTACATTT 58.129 42.857 0.00 0.00 0.00 2.32
2527 2715 2.579410 ACGCAACCTTTCCCTACATT 57.421 45.000 0.00 0.00 0.00 2.71
2528 2716 2.303600 TGTACGCAACCTTTCCCTACAT 59.696 45.455 0.00 0.00 0.00 2.29
2529 2717 1.693062 TGTACGCAACCTTTCCCTACA 59.307 47.619 0.00 0.00 0.00 2.74
2530 2718 2.460757 TGTACGCAACCTTTCCCTAC 57.539 50.000 0.00 0.00 0.00 3.18
2531 2719 3.706600 ATTGTACGCAACCTTTCCCTA 57.293 42.857 0.00 0.00 37.44 3.53
2532 2720 2.579410 ATTGTACGCAACCTTTCCCT 57.421 45.000 0.00 0.00 37.44 4.20
2533 2721 3.373130 GTCTATTGTACGCAACCTTTCCC 59.627 47.826 0.00 0.00 37.44 3.97
2534 2722 3.373130 GGTCTATTGTACGCAACCTTTCC 59.627 47.826 0.00 0.00 37.44 3.13
2535 2723 3.373130 GGGTCTATTGTACGCAACCTTTC 59.627 47.826 0.00 0.00 37.44 2.62
2536 2724 3.244630 TGGGTCTATTGTACGCAACCTTT 60.245 43.478 0.00 0.00 36.92 3.11
2537 2725 2.303600 TGGGTCTATTGTACGCAACCTT 59.696 45.455 0.00 0.00 36.92 3.50
2538 2726 1.903860 TGGGTCTATTGTACGCAACCT 59.096 47.619 0.00 0.00 36.92 3.50
2539 2727 2.389962 TGGGTCTATTGTACGCAACC 57.610 50.000 0.00 0.00 36.92 3.77
2540 2728 3.749609 ACTTTGGGTCTATTGTACGCAAC 59.250 43.478 5.36 0.00 45.77 4.17
2541 2729 3.749088 CACTTTGGGTCTATTGTACGCAA 59.251 43.478 0.00 0.00 44.85 4.85
2542 2730 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
2543 2731 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
2544 2732 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
2554 2742 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2555 2743 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2556 2744 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2557 2745 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2558 2746 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2559 2747 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2560 2748 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2561 2749 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
2568 2756 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
2584 2772 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2587 2775 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2588 2776 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2589 2777 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2590 2778 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2596 2784 2.876368 AAGCCCGGTGCATGTAGCTC 62.876 60.000 15.92 0.78 45.94 4.09
2597 2785 2.876368 GAAGCCCGGTGCATGTAGCT 62.876 60.000 15.92 4.82 45.94 3.32
2598 2786 2.438434 AAGCCCGGTGCATGTAGC 60.438 61.111 15.92 2.56 44.83 3.58
2599 2787 1.819632 GGAAGCCCGGTGCATGTAG 60.820 63.158 15.92 0.00 44.83 2.74
2600 2788 2.270850 GGAAGCCCGGTGCATGTA 59.729 61.111 15.92 0.00 44.83 2.29
2601 2789 4.740822 GGGAAGCCCGGTGCATGT 62.741 66.667 15.92 2.35 44.83 3.21
2625 2813 9.616156 TCTGTACAGGAACACATAACTTTAAAA 57.384 29.630 22.48 0.00 0.00 1.52
2626 2814 9.616156 TTCTGTACAGGAACACATAACTTTAAA 57.384 29.630 22.48 0.61 0.00 1.52
2627 2815 9.787435 ATTCTGTACAGGAACACATAACTTTAA 57.213 29.630 22.48 4.19 0.00 1.52
2628 2816 9.214957 CATTCTGTACAGGAACACATAACTTTA 57.785 33.333 22.48 0.00 0.00 1.85
2629 2817 7.719633 ACATTCTGTACAGGAACACATAACTTT 59.280 33.333 22.48 0.00 0.00 2.66
2630 2818 7.173218 CACATTCTGTACAGGAACACATAACTT 59.827 37.037 22.48 0.00 0.00 2.66
2631 2819 6.650807 CACATTCTGTACAGGAACACATAACT 59.349 38.462 22.48 0.00 0.00 2.24
2632 2820 6.426937 ACACATTCTGTACAGGAACACATAAC 59.573 38.462 22.48 0.00 0.00 1.89
2633 2821 6.530120 ACACATTCTGTACAGGAACACATAA 58.470 36.000 22.48 7.38 0.00 1.90
2634 2822 6.109156 ACACATTCTGTACAGGAACACATA 57.891 37.500 22.48 0.00 0.00 2.29
2635 2823 4.973168 ACACATTCTGTACAGGAACACAT 58.027 39.130 22.48 0.00 0.00 3.21
2713 2908 6.859017 TCAGGAAATCATGAACAATCACATG 58.141 36.000 0.00 0.00 43.31 3.21
2735 2935 6.381420 TGATTCCTTGGGTTGTTTAACTTTCA 59.619 34.615 0.00 0.00 36.99 2.69
2736 2936 6.700081 GTGATTCCTTGGGTTGTTTAACTTTC 59.300 38.462 0.00 0.00 36.99 2.62
2793 3009 2.092429 AGAATGAACCGTGCATGGGTAT 60.092 45.455 28.37 15.93 36.57 2.73
2794 3010 1.280710 AGAATGAACCGTGCATGGGTA 59.719 47.619 28.37 14.37 36.57 3.69
2795 3011 0.038166 AGAATGAACCGTGCATGGGT 59.962 50.000 28.37 23.81 40.20 4.51
2796 3012 2.036958 TAGAATGAACCGTGCATGGG 57.963 50.000 28.37 16.88 0.00 4.00
2798 3014 6.092092 TGAAAATTAGAATGAACCGTGCATG 58.908 36.000 0.00 0.00 0.00 4.06
2801 3017 5.095490 CCTGAAAATTAGAATGAACCGTGC 58.905 41.667 0.00 0.00 0.00 5.34
2802 3018 6.494893 TCCTGAAAATTAGAATGAACCGTG 57.505 37.500 0.00 0.00 0.00 4.94
2804 3020 7.023575 CACTTCCTGAAAATTAGAATGAACCG 58.976 38.462 0.00 0.00 0.00 4.44
2805 3021 7.039714 ACCACTTCCTGAAAATTAGAATGAACC 60.040 37.037 0.00 0.00 0.00 3.62
2807 3023 7.505585 ACACCACTTCCTGAAAATTAGAATGAA 59.494 33.333 0.00 0.00 0.00 2.57
2808 3024 7.004086 ACACCACTTCCTGAAAATTAGAATGA 58.996 34.615 0.00 0.00 0.00 2.57
2809 3025 7.219484 ACACCACTTCCTGAAAATTAGAATG 57.781 36.000 0.00 0.00 0.00 2.67
2810 3026 6.149474 CGACACCACTTCCTGAAAATTAGAAT 59.851 38.462 0.00 0.00 0.00 2.40
2835 3051 2.143122 TCATCAAGCAACACGTTCCTC 58.857 47.619 0.00 0.00 0.00 3.71
2859 3075 3.182967 CACTTCAACTATCTGCCTCGAC 58.817 50.000 0.00 0.00 0.00 4.20
3036 3252 6.751514 AAACATTCATAGCACGAAACCATA 57.248 33.333 0.00 0.00 0.00 2.74
3046 3262 3.825585 TCACCTGCAAAACATTCATAGCA 59.174 39.130 0.00 0.00 0.00 3.49
3052 3268 4.681744 TGAACTTCACCTGCAAAACATTC 58.318 39.130 0.00 0.00 0.00 2.67
3055 3271 4.241681 GTTTGAACTTCACCTGCAAAACA 58.758 39.130 0.00 0.00 31.19 2.83
3056 3272 4.241681 TGTTTGAACTTCACCTGCAAAAC 58.758 39.130 0.00 0.00 31.19 2.43
3133 3349 3.555586 GGCATGCTTCCTTGTCAACAAAT 60.556 43.478 18.92 0.00 35.15 2.32
3250 3466 3.971702 GGGGGCAACAGAGCAGGT 61.972 66.667 0.00 0.00 39.74 4.00
3386 3602 6.036517 ACATCACGATTTTCTTCAGTATGCTC 59.963 38.462 0.00 0.00 34.76 4.26
3510 3726 3.181439 GCTTATCCTGCCCCTATTGTCTT 60.181 47.826 0.00 0.00 0.00 3.01
3511 3727 2.373502 GCTTATCCTGCCCCTATTGTCT 59.626 50.000 0.00 0.00 0.00 3.41
3857 4085 3.055675 TCACATGAGCTCACATCATCACA 60.056 43.478 20.97 0.00 35.20 3.58
3907 4135 0.394762 TGGCATCTGGTTCATCTGGC 60.395 55.000 0.00 0.00 0.00 4.85
3933 4161 1.209261 CCACAAGTTTTGGCCAGGTTT 59.791 47.619 5.11 0.00 34.12 3.27
3955 4183 5.620738 TTGGAGAAGGATGGATGAACTAG 57.379 43.478 0.00 0.00 0.00 2.57
3956 4184 6.388100 AGATTTGGAGAAGGATGGATGAACTA 59.612 38.462 0.00 0.00 0.00 2.24
4158 4387 0.036875 AAGGAAGCCAGAACCGGAAG 59.963 55.000 9.46 0.00 0.00 3.46
4320 4549 1.150081 GTCAGCCTGGATGGGGATG 59.850 63.158 12.67 0.00 41.11 3.51
4327 4556 2.418910 CGGACGAGTCAGCCTGGAT 61.419 63.158 0.00 0.00 0.00 3.41
4500 4729 2.184322 GAGATCTTGGCGCCGTCA 59.816 61.111 23.90 7.84 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.