Multiple sequence alignment - TraesCS5A01G182600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G182600 chr5A 100.000 4416 0 0 1 4416 382326261 382330676 0.000000e+00 8155.0
1 TraesCS5A01G182600 chr5A 71.143 1050 250 46 2290 3314 442505628 442504607 1.240000e-50 211.0
2 TraesCS5A01G182600 chr5A 77.341 331 61 12 2991 3314 442291150 442290827 2.710000e-42 183.0
3 TraesCS5A01G182600 chr5D 93.484 2394 79 27 1866 4206 289073052 289075421 0.000000e+00 3485.0
4 TraesCS5A01G182600 chr5D 84.443 1157 95 47 221 1336 289071465 289072577 0.000000e+00 1061.0
5 TraesCS5A01G182600 chr5D 82.466 519 35 32 1315 1828 289072589 289073056 1.910000e-108 403.0
6 TraesCS5A01G182600 chr5D 71.985 1053 236 53 2290 3314 556722216 556721195 5.670000e-64 255.0
7 TraesCS5A01G182600 chr5D 80.159 378 35 18 1847 2217 15547509 15547853 3.410000e-61 246.0
8 TraesCS5A01G182600 chr5D 88.587 184 14 4 4234 4416 289075412 289075589 2.670000e-52 217.0
9 TraesCS5A01G182600 chr5D 82.184 174 20 2 2437 2610 15553156 15553318 5.960000e-29 139.0
10 TraesCS5A01G182600 chr5D 83.673 98 7 2 2327 2424 15547912 15548000 2.830000e-12 84.2
11 TraesCS5A01G182600 chr5D 80.469 128 10 4 2640 2767 15553324 15553436 2.830000e-12 84.2
12 TraesCS5A01G182600 chr5D 92.453 53 4 0 76 128 289070709 289070761 4.740000e-10 76.8
13 TraesCS5A01G182600 chr5B 91.426 2391 121 41 1704 4057 328365889 328368232 0.000000e+00 3203.0
14 TraesCS5A01G182600 chr5B 87.705 1521 96 39 217 1702 328364238 328365702 0.000000e+00 1688.0
15 TraesCS5A01G182600 chr5B 73.040 1046 227 47 2295 3314 400563833 400562817 7.130000e-83 318.0
16 TraesCS5A01G182600 chr5B 88.679 53 6 0 76 128 328363939 328363991 1.030000e-06 65.8
17 TraesCS5A01G182600 chr3D 83.212 411 46 11 2357 2767 18501558 18501171 5.430000e-94 355.0
18 TraesCS5A01G182600 chr3D 82.620 374 37 9 1850 2217 18501979 18501628 5.550000e-79 305.0
19 TraesCS5A01G182600 chr3D 85.034 147 14 2 1898 2044 18445292 18445154 4.600000e-30 143.0
20 TraesCS5A01G182600 chr4A 72.000 1050 241 49 2290 3314 605086472 605085451 1.220000e-65 261.0
21 TraesCS5A01G182600 chr4A 75.849 265 60 4 3013 3275 662326303 662326565 9.970000e-27 132.0
22 TraesCS5A01G182600 chr7D 77.239 268 57 4 3013 3278 47402273 47402008 2.130000e-33 154.0
23 TraesCS5A01G182600 chr7A 76.604 265 58 4 3013 3275 50115085 50115347 4.600000e-30 143.0
24 TraesCS5A01G182600 chr2D 88.608 79 9 0 3026 3104 407981763 407981841 3.640000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G182600 chr5A 382326261 382330676 4415 False 8155.000000 8155 100.0000 1 4416 1 chr5A.!!$F1 4415
1 TraesCS5A01G182600 chr5A 442504607 442505628 1021 True 211.000000 211 71.1430 2290 3314 1 chr5A.!!$R2 1024
2 TraesCS5A01G182600 chr5D 289070709 289075589 4880 False 1048.560000 3485 88.2866 76 4416 5 chr5D.!!$F3 4340
3 TraesCS5A01G182600 chr5D 556721195 556722216 1021 True 255.000000 255 71.9850 2290 3314 1 chr5D.!!$R1 1024
4 TraesCS5A01G182600 chr5B 328363939 328368232 4293 False 1652.266667 3203 89.2700 76 4057 3 chr5B.!!$F1 3981
5 TraesCS5A01G182600 chr5B 400562817 400563833 1016 True 318.000000 318 73.0400 2295 3314 1 chr5B.!!$R1 1019
6 TraesCS5A01G182600 chr3D 18501171 18501979 808 True 330.000000 355 82.9160 1850 2767 2 chr3D.!!$R2 917
7 TraesCS5A01G182600 chr4A 605085451 605086472 1021 True 261.000000 261 72.0000 2290 3314 1 chr4A.!!$R1 1024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
587 1277 0.105778 CCCATTTCTCCTCCGCTCTC 59.894 60.0 0.0 0.0 0.00 3.20 F
895 1610 0.321122 CTGCTCTCGCCCTGTTTCTT 60.321 55.0 0.0 0.0 34.43 2.52 F
2773 3740 0.103937 CGGTCATCTTCCAGAGCCTC 59.896 60.0 0.0 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1934 2901 0.888736 CACCACCAGCGTCCATGAAA 60.889 55.000 0.00 0.0 0.00 2.69 R
2803 3770 1.227263 CGACCCCGTGATGATGGAC 60.227 63.158 0.00 0.0 0.00 4.02 R
4281 5307 0.038251 GCACGTGACCTCTCACATCA 60.038 55.000 22.23 0.0 46.47 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.539983 CTCCCCATAATGACCCCGT 58.460 57.895 0.00 0.00 0.00 5.28
19 20 0.108585 CTCCCCATAATGACCCCGTG 59.891 60.000 0.00 0.00 0.00 4.94
20 21 1.528309 CCCCATAATGACCCCGTGC 60.528 63.158 0.00 0.00 0.00 5.34
21 22 1.531748 CCCATAATGACCCCGTGCT 59.468 57.895 0.00 0.00 0.00 4.40
22 23 0.106719 CCCATAATGACCCCGTGCTT 60.107 55.000 0.00 0.00 0.00 3.91
23 24 1.024271 CCATAATGACCCCGTGCTTG 58.976 55.000 0.00 0.00 0.00 4.01
24 25 1.681780 CCATAATGACCCCGTGCTTGT 60.682 52.381 0.00 0.00 0.00 3.16
25 26 2.420827 CCATAATGACCCCGTGCTTGTA 60.421 50.000 0.00 0.00 0.00 2.41
26 27 2.684001 TAATGACCCCGTGCTTGTAG 57.316 50.000 0.00 0.00 0.00 2.74
27 28 0.676782 AATGACCCCGTGCTTGTAGC 60.677 55.000 0.00 0.00 42.82 3.58
43 44 7.365840 GCTTGTAGCATTACTGTCTAAAAGT 57.634 36.000 12.05 0.00 41.89 2.66
44 45 8.475331 GCTTGTAGCATTACTGTCTAAAAGTA 57.525 34.615 12.05 0.00 41.89 2.24
45 46 8.381387 GCTTGTAGCATTACTGTCTAAAAGTAC 58.619 37.037 12.05 0.00 41.89 2.73
46 47 8.456904 TTGTAGCATTACTGTCTAAAAGTACG 57.543 34.615 0.00 0.00 29.93 3.67
47 48 7.596494 TGTAGCATTACTGTCTAAAAGTACGT 58.404 34.615 0.00 0.00 29.93 3.57
48 49 6.946229 AGCATTACTGTCTAAAAGTACGTG 57.054 37.500 0.00 0.00 29.93 4.49
49 50 5.347907 AGCATTACTGTCTAAAAGTACGTGC 59.652 40.000 0.00 0.00 39.71 5.34
50 51 5.347907 GCATTACTGTCTAAAAGTACGTGCT 59.652 40.000 0.00 0.00 38.13 4.40
51 52 6.128634 GCATTACTGTCTAAAAGTACGTGCTT 60.129 38.462 13.53 13.53 38.13 3.91
52 53 6.758593 TTACTGTCTAAAAGTACGTGCTTG 57.241 37.500 19.89 7.71 29.93 4.01
53 54 3.493503 ACTGTCTAAAAGTACGTGCTTGC 59.506 43.478 19.89 8.52 0.00 4.01
54 55 2.803956 TGTCTAAAAGTACGTGCTTGCC 59.196 45.455 19.89 6.83 0.00 4.52
55 56 2.803956 GTCTAAAAGTACGTGCTTGCCA 59.196 45.455 19.89 7.10 0.00 4.92
56 57 3.435671 GTCTAAAAGTACGTGCTTGCCAT 59.564 43.478 19.89 9.14 0.00 4.40
57 58 4.628333 GTCTAAAAGTACGTGCTTGCCATA 59.372 41.667 19.89 9.74 0.00 2.74
58 59 5.293569 GTCTAAAAGTACGTGCTTGCCATAT 59.706 40.000 19.89 0.00 0.00 1.78
59 60 4.355543 AAAAGTACGTGCTTGCCATATG 57.644 40.909 19.89 0.00 0.00 1.78
60 61 1.299541 AGTACGTGCTTGCCATATGC 58.700 50.000 0.00 0.00 41.77 3.14
72 73 3.155093 GCCATATGCAGTTGGACAAAG 57.845 47.619 19.19 0.00 40.77 2.77
73 74 2.736400 GCCATATGCAGTTGGACAAAGC 60.736 50.000 19.19 4.40 40.77 3.51
74 75 2.478370 CCATATGCAGTTGGACAAAGCG 60.478 50.000 11.40 0.00 34.81 4.68
122 123 6.998074 TCTCTAACAAAACACATTGGATGAGT 59.002 34.615 0.00 0.00 35.58 3.41
131 132 4.279169 ACACATTGGATGAGTGTTTTGAGG 59.721 41.667 0.00 0.00 43.40 3.86
133 134 5.473162 CACATTGGATGAGTGTTTTGAGGTA 59.527 40.000 0.00 0.00 0.00 3.08
135 136 4.974645 TGGATGAGTGTTTTGAGGTAGT 57.025 40.909 0.00 0.00 0.00 2.73
137 138 6.428083 TGGATGAGTGTTTTGAGGTAGTAA 57.572 37.500 0.00 0.00 0.00 2.24
138 139 6.228258 TGGATGAGTGTTTTGAGGTAGTAAC 58.772 40.000 0.00 0.00 0.00 2.50
141 142 7.390718 GGATGAGTGTTTTGAGGTAGTAACATT 59.609 37.037 0.00 0.00 33.57 2.71
145 146 9.485206 GAGTGTTTTGAGGTAGTAACATTAGAA 57.515 33.333 0.00 0.00 33.57 2.10
146 147 9.490379 AGTGTTTTGAGGTAGTAACATTAGAAG 57.510 33.333 0.00 0.00 33.57 2.85
147 148 9.269453 GTGTTTTGAGGTAGTAACATTAGAAGT 57.731 33.333 0.00 0.00 33.57 3.01
148 149 9.268268 TGTTTTGAGGTAGTAACATTAGAAGTG 57.732 33.333 0.00 0.00 0.00 3.16
149 150 8.718734 GTTTTGAGGTAGTAACATTAGAAGTGG 58.281 37.037 0.00 0.00 0.00 4.00
150 151 7.786046 TTGAGGTAGTAACATTAGAAGTGGA 57.214 36.000 0.00 0.00 0.00 4.02
151 152 7.166691 TGAGGTAGTAACATTAGAAGTGGAC 57.833 40.000 0.00 0.00 0.00 4.02
152 153 6.952358 TGAGGTAGTAACATTAGAAGTGGACT 59.048 38.462 0.00 0.00 0.00 3.85
153 154 7.093902 TGAGGTAGTAACATTAGAAGTGGACTG 60.094 40.741 0.00 0.00 0.00 3.51
158 159 7.506114 AGTAACATTAGAAGTGGACTGTTGAA 58.494 34.615 0.00 0.00 0.00 2.69
159 160 8.157476 AGTAACATTAGAAGTGGACTGTTGAAT 58.843 33.333 0.00 0.00 0.00 2.57
160 161 7.823745 AACATTAGAAGTGGACTGTTGAATT 57.176 32.000 0.00 0.00 0.00 2.17
163 164 7.607991 ACATTAGAAGTGGACTGTTGAATTAGG 59.392 37.037 0.00 0.00 0.00 2.69
164 165 5.825593 AGAAGTGGACTGTTGAATTAGGA 57.174 39.130 0.00 0.00 0.00 2.94
166 167 6.601332 AGAAGTGGACTGTTGAATTAGGAAA 58.399 36.000 0.00 0.00 0.00 3.13
167 168 6.486993 AGAAGTGGACTGTTGAATTAGGAAAC 59.513 38.462 0.00 0.00 0.00 2.78
168 169 4.755123 AGTGGACTGTTGAATTAGGAAACG 59.245 41.667 0.00 0.00 0.00 3.60
170 171 3.500680 GGACTGTTGAATTAGGAAACGCA 59.499 43.478 0.00 0.00 0.00 5.24
171 172 4.156008 GGACTGTTGAATTAGGAAACGCAT 59.844 41.667 0.00 0.00 0.00 4.73
172 173 5.335661 GGACTGTTGAATTAGGAAACGCATT 60.336 40.000 0.00 0.00 0.00 3.56
173 174 6.084326 ACTGTTGAATTAGGAAACGCATTT 57.916 33.333 0.00 0.00 0.00 2.32
174 175 5.920273 ACTGTTGAATTAGGAAACGCATTTG 59.080 36.000 0.00 0.00 0.00 2.32
176 177 6.507900 TGTTGAATTAGGAAACGCATTTGAA 58.492 32.000 0.00 0.00 0.00 2.69
177 178 6.640499 TGTTGAATTAGGAAACGCATTTGAAG 59.360 34.615 0.00 0.00 0.00 3.02
178 179 5.708948 TGAATTAGGAAACGCATTTGAAGG 58.291 37.500 0.00 0.00 0.00 3.46
180 181 4.759516 TTAGGAAACGCATTTGAAGGAC 57.240 40.909 0.00 0.00 0.00 3.85
184 858 0.517316 AACGCATTTGAAGGACTCGC 59.483 50.000 0.00 0.00 0.00 5.03
189 863 1.535462 CATTTGAAGGACTCGCCGTTT 59.465 47.619 0.00 0.00 43.43 3.60
190 864 2.529780 TTTGAAGGACTCGCCGTTTA 57.470 45.000 0.00 0.00 43.43 2.01
193 867 1.546923 TGAAGGACTCGCCGTTTATCA 59.453 47.619 0.00 0.00 43.43 2.15
201 875 3.635373 ACTCGCCGTTTATCAGATAAGGA 59.365 43.478 11.17 2.81 0.00 3.36
203 877 5.475909 ACTCGCCGTTTATCAGATAAGGATA 59.524 40.000 11.17 0.00 0.00 2.59
204 878 6.015688 ACTCGCCGTTTATCAGATAAGGATAA 60.016 38.462 11.17 0.00 35.90 1.75
205 879 6.931838 TCGCCGTTTATCAGATAAGGATAAT 58.068 36.000 11.17 0.00 37.16 1.28
206 880 8.058667 TCGCCGTTTATCAGATAAGGATAATA 57.941 34.615 11.17 0.00 37.16 0.98
207 881 8.692710 TCGCCGTTTATCAGATAAGGATAATAT 58.307 33.333 11.17 0.00 37.16 1.28
243 917 0.528470 GAAGGACTCTCCGTGGACTG 59.472 60.000 0.00 0.00 42.75 3.51
314 988 1.299541 GCACCCACATAATCACCTCG 58.700 55.000 0.00 0.00 0.00 4.63
317 991 1.136305 ACCCACATAATCACCTCGTCG 59.864 52.381 0.00 0.00 0.00 5.12
334 1008 3.479269 GTCTTTGACCGGCTCGCG 61.479 66.667 0.00 0.00 0.00 5.87
414 1088 3.936203 GCCATATCCGGGCGGTGA 61.936 66.667 0.00 0.00 42.39 4.02
415 1089 2.343758 CCATATCCGGGCGGTGAG 59.656 66.667 0.00 0.00 36.47 3.51
445 1119 0.671251 CGACTGAGCCTAGGCCTAAG 59.329 60.000 30.42 24.81 43.17 2.18
458 1132 2.257691 GCCTAAGCCTAAGCCTAACC 57.742 55.000 0.00 0.00 41.25 2.85
459 1133 1.489230 GCCTAAGCCTAAGCCTAACCA 59.511 52.381 0.00 0.00 41.25 3.67
460 1134 2.092592 GCCTAAGCCTAAGCCTAACCAA 60.093 50.000 0.00 0.00 41.25 3.67
470 1145 1.232621 GCCTAACCAACCGTGTCACC 61.233 60.000 0.00 0.00 0.00 4.02
532 1212 4.460683 GTCCCCGTGCCGTGCATA 62.461 66.667 1.90 0.00 41.91 3.14
533 1213 3.707458 TCCCCGTGCCGTGCATAA 61.707 61.111 1.90 0.00 41.91 1.90
534 1214 2.748251 CCCCGTGCCGTGCATAAA 60.748 61.111 1.90 0.00 41.91 1.40
538 1228 1.154112 CGTGCCGTGCATAAAACCC 60.154 57.895 1.90 0.00 41.91 4.11
585 1275 1.147153 CCCCATTTCTCCTCCGCTC 59.853 63.158 0.00 0.00 0.00 5.03
586 1276 1.341156 CCCCATTTCTCCTCCGCTCT 61.341 60.000 0.00 0.00 0.00 4.09
587 1277 0.105778 CCCATTTCTCCTCCGCTCTC 59.894 60.000 0.00 0.00 0.00 3.20
588 1278 1.118838 CCATTTCTCCTCCGCTCTCT 58.881 55.000 0.00 0.00 0.00 3.10
589 1279 1.484240 CCATTTCTCCTCCGCTCTCTT 59.516 52.381 0.00 0.00 0.00 2.85
594 1284 1.076632 TCCTCCGCTCTCTTCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
596 1286 1.076339 CTCCGCTCTCTTCCTCCCT 60.076 63.158 0.00 0.00 0.00 4.20
597 1287 1.076632 TCCGCTCTCTTCCTCCCTC 60.077 63.158 0.00 0.00 0.00 4.30
598 1288 2.131067 CCGCTCTCTTCCTCCCTCC 61.131 68.421 0.00 0.00 0.00 4.30
599 1289 2.131067 CGCTCTCTTCCTCCCTCCC 61.131 68.421 0.00 0.00 0.00 4.30
600 1290 1.313129 GCTCTCTTCCTCCCTCCCT 59.687 63.158 0.00 0.00 0.00 4.20
601 1291 0.759060 GCTCTCTTCCTCCCTCCCTC 60.759 65.000 0.00 0.00 0.00 4.30
629 1327 2.503061 CCAGGCCAGATCGACCAG 59.497 66.667 5.01 0.00 0.00 4.00
637 1342 2.586357 GATCGACCAGGCGCTTCC 60.586 66.667 7.64 0.00 0.00 3.46
653 1358 4.521062 CCCGGAGCGGCAGAAGAG 62.521 72.222 0.73 0.00 46.86 2.85
660 1365 4.116328 CGGCAGAAGAGGACGCGA 62.116 66.667 15.93 0.00 0.00 5.87
661 1366 2.496817 GGCAGAAGAGGACGCGAT 59.503 61.111 15.93 0.00 0.00 4.58
662 1367 1.590259 GGCAGAAGAGGACGCGATC 60.590 63.158 15.93 7.97 0.00 3.69
663 1368 1.941734 GCAGAAGAGGACGCGATCG 60.942 63.158 15.93 11.69 42.43 3.69
664 1369 1.941734 CAGAAGAGGACGCGATCGC 60.942 63.158 29.80 29.80 39.84 4.58
665 1370 2.102357 GAAGAGGACGCGATCGCA 59.898 61.111 36.45 0.00 42.06 5.10
715 1420 0.458889 TCCGGTTTGAATACTCCGCG 60.459 55.000 0.00 0.00 41.38 6.46
716 1421 1.426041 CCGGTTTGAATACTCCGCGG 61.426 60.000 22.12 22.12 41.38 6.46
847 1562 1.092921 TTGACTGCCGTGTGTTGACC 61.093 55.000 0.00 0.00 0.00 4.02
848 1563 1.227556 GACTGCCGTGTGTTGACCT 60.228 57.895 0.00 0.00 0.00 3.85
851 1566 1.224069 CTGCCGTGTGTTGACCTCTG 61.224 60.000 0.00 0.00 0.00 3.35
871 1586 2.245438 CTGTCTCTTTCGCCCCCTCC 62.245 65.000 0.00 0.00 0.00 4.30
887 1602 4.200283 CCGTCTCTGCTCTCGCCC 62.200 72.222 0.00 0.00 34.43 6.13
892 1607 1.188219 TCTCTGCTCTCGCCCTGTTT 61.188 55.000 0.00 0.00 34.43 2.83
893 1608 0.739112 CTCTGCTCTCGCCCTGTTTC 60.739 60.000 0.00 0.00 34.43 2.78
894 1609 1.188219 TCTGCTCTCGCCCTGTTTCT 61.188 55.000 0.00 0.00 34.43 2.52
895 1610 0.321122 CTGCTCTCGCCCTGTTTCTT 60.321 55.000 0.00 0.00 34.43 2.52
907 1622 3.384467 CCCTGTTTCTTTCTTTCAGCCAA 59.616 43.478 0.00 0.00 0.00 4.52
910 1625 5.505173 TGTTTCTTTCTTTCAGCCAAGAG 57.495 39.130 0.00 0.00 34.22 2.85
912 1627 4.437682 TTCTTTCTTTCAGCCAAGAGGA 57.562 40.909 0.00 0.00 34.22 3.71
924 1639 2.069273 CCAAGAGGAGCGTGTAAACAG 58.931 52.381 0.00 0.00 36.89 3.16
962 1677 2.294074 CTCCTGGTTTCGTGGTTTGAA 58.706 47.619 0.00 0.00 0.00 2.69
975 1690 1.423921 GGTTTGAAGGGAGAGGTTGGA 59.576 52.381 0.00 0.00 0.00 3.53
976 1691 2.505405 GTTTGAAGGGAGAGGTTGGAC 58.495 52.381 0.00 0.00 0.00 4.02
977 1692 1.814429 TTGAAGGGAGAGGTTGGACA 58.186 50.000 0.00 0.00 0.00 4.02
978 1693 1.352083 TGAAGGGAGAGGTTGGACAG 58.648 55.000 0.00 0.00 0.00 3.51
1188 1913 2.348472 ACCCCTCTTGTTCATCTCCAA 58.652 47.619 0.00 0.00 0.00 3.53
1189 1914 2.922283 ACCCCTCTTGTTCATCTCCAAT 59.078 45.455 0.00 0.00 0.00 3.16
1190 1915 3.334881 ACCCCTCTTGTTCATCTCCAATT 59.665 43.478 0.00 0.00 0.00 2.32
1191 1916 3.698040 CCCCTCTTGTTCATCTCCAATTG 59.302 47.826 0.00 0.00 0.00 2.32
1192 1917 4.338879 CCCTCTTGTTCATCTCCAATTGT 58.661 43.478 4.43 0.00 0.00 2.71
1193 1918 4.397417 CCCTCTTGTTCATCTCCAATTGTC 59.603 45.833 4.43 0.00 0.00 3.18
1194 1919 4.397417 CCTCTTGTTCATCTCCAATTGTCC 59.603 45.833 4.43 0.00 0.00 4.02
1195 1920 4.984295 TCTTGTTCATCTCCAATTGTCCA 58.016 39.130 4.43 0.00 0.00 4.02
1204 1929 2.420022 CTCCAATTGTCCATGTTCGTCC 59.580 50.000 4.43 0.00 0.00 4.79
1256 1982 1.532343 CGTCGACGATTCATCTGGCG 61.532 60.000 33.35 0.00 43.02 5.69
1276 2002 3.661936 GCGTCGTCTCAGAAATTTGTGTC 60.662 47.826 14.36 6.55 0.00 3.67
1293 2020 9.736023 AATTTGTGTCTTAGTCAGATTTTGTTC 57.264 29.630 0.00 0.00 32.60 3.18
1296 2023 8.506168 TGTGTCTTAGTCAGATTTTGTTCTTT 57.494 30.769 0.00 0.00 32.60 2.52
1363 2127 5.885912 ACAATTACTCGCATGGGTTTCTAAT 59.114 36.000 9.86 4.45 0.00 1.73
1366 2130 6.474140 TTACTCGCATGGGTTTCTAATCTA 57.526 37.500 9.86 0.00 0.00 1.98
1371 2135 6.353323 TCGCATGGGTTTCTAATCTATTTGA 58.647 36.000 9.86 0.00 0.00 2.69
1446 2215 8.250332 TCAATCATGGTTAATGCTTTCCTTTAC 58.750 33.333 0.00 0.00 36.11 2.01
1478 2247 6.055588 GCATTGTCTATAGGCCAAAAGAGTA 58.944 40.000 5.01 0.00 0.00 2.59
1479 2248 6.017852 GCATTGTCTATAGGCCAAAAGAGTAC 60.018 42.308 5.01 0.00 0.00 2.73
1480 2249 5.609533 TGTCTATAGGCCAAAAGAGTACC 57.390 43.478 5.01 0.00 0.00 3.34
1513 2282 2.664402 ATGGCCATTATGGTGTCTCC 57.336 50.000 14.09 5.55 40.46 3.71
1541 2310 5.241662 TCTTTTTGTTTTGTTTGGAGTGGG 58.758 37.500 0.00 0.00 0.00 4.61
1709 2663 8.744652 AGAGGTATCACATCTTATACAGTATGC 58.255 37.037 3.03 0.00 35.48 3.14
1715 2669 7.555965 TCACATCTTATACAGTATGCACAACT 58.444 34.615 3.03 0.00 42.53 3.16
1721 2675 5.779806 ATACAGTATGCACAACTCGTTTC 57.220 39.130 0.57 0.00 42.53 2.78
1726 2680 2.943653 CACAACTCGTTTCCGCCC 59.056 61.111 0.00 0.00 0.00 6.13
1740 2695 5.123936 GTTTCCGCCCAAGATTAGTAGATT 58.876 41.667 0.00 0.00 0.00 2.40
1742 2697 2.808543 CCGCCCAAGATTAGTAGATTGC 59.191 50.000 0.00 0.00 0.00 3.56
1746 2701 4.217118 GCCCAAGATTAGTAGATTGCCATG 59.783 45.833 0.00 0.00 0.00 3.66
1748 2703 5.471456 CCCAAGATTAGTAGATTGCCATGAC 59.529 44.000 0.00 0.00 0.00 3.06
1751 2706 7.067372 CCAAGATTAGTAGATTGCCATGACAAA 59.933 37.037 0.00 0.00 32.27 2.83
1754 2709 8.680903 AGATTAGTAGATTGCCATGACAAAAAG 58.319 33.333 0.00 0.00 32.27 2.27
1755 2710 5.649782 AGTAGATTGCCATGACAAAAAGG 57.350 39.130 0.00 0.00 32.27 3.11
1756 2711 3.967332 AGATTGCCATGACAAAAAGGG 57.033 42.857 0.00 0.00 32.27 3.95
1799 2756 8.385111 CCACATAAAAGTTGAATTGCATGATTC 58.615 33.333 0.00 4.46 36.73 2.52
1800 2757 8.927721 CACATAAAAGTTGAATTGCATGATTCA 58.072 29.630 9.30 9.30 42.58 2.57
1828 2785 5.610398 ACAAAACCAATTTTCCTGGATGAC 58.390 37.500 0.00 0.00 35.79 3.06
1829 2786 4.890158 AAACCAATTTTCCTGGATGACC 57.110 40.909 0.00 0.00 37.40 4.02
1833 2790 3.616219 CAATTTTCCTGGATGACCGGTA 58.384 45.455 7.34 0.00 40.75 4.02
1839 2796 2.235402 TCCTGGATGACCGGTAGTTTTC 59.765 50.000 7.34 0.00 40.75 2.29
1841 2798 3.262420 CTGGATGACCGGTAGTTTTCAG 58.738 50.000 7.34 7.41 39.42 3.02
1842 2799 2.635915 TGGATGACCGGTAGTTTTCAGT 59.364 45.455 7.34 0.00 39.42 3.41
1848 2805 6.403866 TGACCGGTAGTTTTCAGTTAGTTA 57.596 37.500 7.34 0.00 0.00 2.24
1865 2822 7.957484 CAGTTAGTTATCTTTCACCGAAATGTG 59.043 37.037 0.00 0.00 37.59 3.21
1871 2828 6.668541 ATCTTTCACCGAAATGTGATGTAG 57.331 37.500 0.00 0.00 44.27 2.74
1888 2845 9.899226 TGTGATGTAGAGTATATTTCTTCATCG 57.101 33.333 19.81 0.00 45.14 3.84
1934 2901 6.374417 ACAAGAGTGGTAACTAATCATGGT 57.626 37.500 0.00 0.00 36.52 3.55
1936 2903 7.231467 ACAAGAGTGGTAACTAATCATGGTTT 58.769 34.615 0.00 0.00 36.52 3.27
1937 2904 7.390718 ACAAGAGTGGTAACTAATCATGGTTTC 59.609 37.037 0.00 0.00 36.52 2.78
1939 2906 7.633789 AGAGTGGTAACTAATCATGGTTTCAT 58.366 34.615 0.00 0.00 36.52 2.57
2035 3002 1.957186 GTACAACCGGAAGCACGCA 60.957 57.895 9.46 0.00 0.00 5.24
2328 3295 2.279784 GGAGATCGCGCCCTTCAG 60.280 66.667 0.00 0.00 0.00 3.02
2728 3695 4.020617 TTCCAGCAGCTGTCGGGG 62.021 66.667 21.26 13.89 0.00 5.73
2773 3740 0.103937 CGGTCATCTTCCAGAGCCTC 59.896 60.000 0.00 0.00 0.00 4.70
2788 3755 4.194720 CTCGGGTTCGGCTCCTCG 62.195 72.222 0.00 0.00 36.95 4.63
2890 3857 3.197790 CGGCGGGTGCTCTTCATG 61.198 66.667 0.00 0.00 42.25 3.07
3236 4203 0.797249 GGTCATGTCCGTCTTCGTCG 60.797 60.000 0.00 0.00 35.01 5.12
3355 4322 3.253838 TACCAGGGCCACCACCAC 61.254 66.667 6.18 0.00 40.13 4.16
3364 4331 4.704833 CACCACCACCGCCAGGAG 62.705 72.222 0.00 0.00 41.02 3.69
3437 4404 1.933181 TCGATCCATGATGCGTGTTTC 59.067 47.619 0.00 0.00 0.00 2.78
3438 4405 1.332290 CGATCCATGATGCGTGTTTCG 60.332 52.381 0.00 0.00 43.12 3.46
3451 4418 6.656314 TGCGTGTTTCGATAAGATTTACAT 57.344 33.333 0.00 0.00 42.86 2.29
3456 4423 9.961266 CGTGTTTCGATAAGATTTACATTACAA 57.039 29.630 0.00 0.00 42.86 2.41
3489 4462 1.136305 GGTCGTGCTATAGGAACTGCA 59.864 52.381 1.04 0.00 41.52 4.41
3523 4499 0.391597 TGTCCAAGACCTCGTGTTCC 59.608 55.000 0.00 0.00 0.00 3.62
3526 4502 2.298163 GTCCAAGACCTCGTGTTCCTAA 59.702 50.000 0.00 0.00 0.00 2.69
3529 4505 4.773674 TCCAAGACCTCGTGTTCCTAATTA 59.226 41.667 0.00 0.00 0.00 1.40
3530 4506 4.868734 CCAAGACCTCGTGTTCCTAATTAC 59.131 45.833 0.00 0.00 0.00 1.89
3531 4507 4.367386 AGACCTCGTGTTCCTAATTACG 57.633 45.455 0.00 0.00 37.85 3.18
3532 4508 3.760684 AGACCTCGTGTTCCTAATTACGT 59.239 43.478 0.00 0.00 37.74 3.57
3603 4579 4.087892 CTGGTGGCGGAGGTCAGG 62.088 72.222 0.00 0.00 0.00 3.86
3668 4650 2.392821 GTCTCGCTATGATGCACTGAG 58.607 52.381 0.00 0.00 0.00 3.35
3670 4652 2.689983 TCTCGCTATGATGCACTGAGAA 59.310 45.455 0.00 0.00 28.95 2.87
3689 4686 3.555956 AGAATGTGTGTGTTGTCTCGTTC 59.444 43.478 0.00 0.00 0.00 3.95
3720 4717 7.152645 GTCATGGTAACGTAATGATCATACCT 58.847 38.462 19.17 4.49 42.51 3.08
3724 4721 7.732025 TGGTAACGTAATGATCATACCTTCAT 58.268 34.615 19.17 2.58 42.51 2.57
3788 4790 8.635877 ATCTGAACACGACTACAGATTTTATC 57.364 34.615 0.00 0.00 44.30 1.75
3789 4791 7.827701 TCTGAACACGACTACAGATTTTATCT 58.172 34.615 0.00 0.00 41.15 1.98
3858 4868 5.054477 TGACCTTTTCTAGTTCAAACGGAG 58.946 41.667 5.29 0.00 0.00 4.63
3862 4872 4.950205 TTTCTAGTTCAAACGGAGAGGT 57.050 40.909 0.00 0.00 30.84 3.85
3863 4873 3.936372 TCTAGTTCAAACGGAGAGGTG 57.064 47.619 0.00 0.00 0.00 4.00
3864 4874 3.228453 TCTAGTTCAAACGGAGAGGTGT 58.772 45.455 0.00 0.00 0.00 4.16
3911 4924 2.026915 TCAGTGCATGCTTATCTGTGGT 60.027 45.455 20.33 0.00 0.00 4.16
3912 4925 2.751259 CAGTGCATGCTTATCTGTGGTT 59.249 45.455 20.33 0.00 0.00 3.67
4012 5026 5.576895 GTCAAGATTTTTCCTGCTATCTGC 58.423 41.667 0.00 0.00 43.25 4.26
4099 5125 9.680315 CTAGTTTACGATAGATCCGAGATTTTT 57.320 33.333 0.00 0.00 41.38 1.94
4135 5161 5.105106 TGCCTCAAGTCAACCTCGAAATATA 60.105 40.000 0.00 0.00 0.00 0.86
4148 5174 5.512082 CCTCGAAATATAGTAGTGTATGCGC 59.488 44.000 0.00 0.00 0.00 6.09
4184 5210 6.867550 TCTTGTGTCACTGGACTATTCTATG 58.132 40.000 4.27 0.00 44.61 2.23
4189 5215 5.483937 TGTCACTGGACTATTCTATGGTGTT 59.516 40.000 0.00 0.00 44.61 3.32
4190 5216 6.043411 GTCACTGGACTATTCTATGGTGTTC 58.957 44.000 0.00 0.00 40.99 3.18
4191 5217 5.958380 TCACTGGACTATTCTATGGTGTTCT 59.042 40.000 0.00 0.00 0.00 3.01
4192 5218 6.045318 CACTGGACTATTCTATGGTGTTCTG 58.955 44.000 0.00 0.00 0.00 3.02
4193 5219 5.958380 ACTGGACTATTCTATGGTGTTCTGA 59.042 40.000 0.00 0.00 0.00 3.27
4194 5220 6.440647 ACTGGACTATTCTATGGTGTTCTGAA 59.559 38.462 0.00 0.00 0.00 3.02
4195 5221 7.126421 ACTGGACTATTCTATGGTGTTCTGAAT 59.874 37.037 0.00 0.00 0.00 2.57
4196 5222 7.275183 TGGACTATTCTATGGTGTTCTGAATG 58.725 38.462 0.00 0.00 0.00 2.67
4197 5223 7.125659 TGGACTATTCTATGGTGTTCTGAATGA 59.874 37.037 0.00 0.00 0.00 2.57
4198 5224 8.153550 GGACTATTCTATGGTGTTCTGAATGAT 58.846 37.037 0.00 0.00 0.00 2.45
4199 5225 9.202273 GACTATTCTATGGTGTTCTGAATGATC 57.798 37.037 0.00 0.00 0.00 2.92
4200 5226 8.932610 ACTATTCTATGGTGTTCTGAATGATCT 58.067 33.333 0.00 0.00 0.00 2.75
4201 5227 9.421806 CTATTCTATGGTGTTCTGAATGATCTC 57.578 37.037 0.00 0.00 0.00 2.75
4202 5228 6.796785 TCTATGGTGTTCTGAATGATCTCA 57.203 37.500 0.00 0.00 0.00 3.27
4203 5229 7.370905 TCTATGGTGTTCTGAATGATCTCAT 57.629 36.000 0.00 0.00 38.41 2.90
4204 5230 7.440198 TCTATGGTGTTCTGAATGATCTCATC 58.560 38.462 0.00 0.00 35.10 2.92
4205 5231 5.688814 TGGTGTTCTGAATGATCTCATCT 57.311 39.130 0.00 0.00 35.10 2.90
4206 5232 6.058553 TGGTGTTCTGAATGATCTCATCTT 57.941 37.500 0.00 0.00 35.10 2.40
4207 5233 5.878669 TGGTGTTCTGAATGATCTCATCTTG 59.121 40.000 0.00 0.00 35.10 3.02
4208 5234 5.879223 GGTGTTCTGAATGATCTCATCTTGT 59.121 40.000 0.00 0.00 35.10 3.16
4209 5235 7.044181 GGTGTTCTGAATGATCTCATCTTGTA 58.956 38.462 0.00 0.00 35.10 2.41
4210 5236 7.550551 GGTGTTCTGAATGATCTCATCTTGTAA 59.449 37.037 0.00 0.00 35.10 2.41
4211 5237 9.107177 GTGTTCTGAATGATCTCATCTTGTAAT 57.893 33.333 0.00 0.00 35.10 1.89
4212 5238 9.106070 TGTTCTGAATGATCTCATCTTGTAATG 57.894 33.333 0.00 0.00 35.10 1.90
4213 5239 9.107177 GTTCTGAATGATCTCATCTTGTAATGT 57.893 33.333 0.00 0.00 35.10 2.71
4215 5241 9.755804 TCTGAATGATCTCATCTTGTAATGTAC 57.244 33.333 0.00 0.00 35.10 2.90
4216 5242 9.761504 CTGAATGATCTCATCTTGTAATGTACT 57.238 33.333 0.00 0.00 35.10 2.73
4217 5243 9.538508 TGAATGATCTCATCTTGTAATGTACTG 57.461 33.333 0.00 0.00 35.10 2.74
4218 5244 9.539825 GAATGATCTCATCTTGTAATGTACTGT 57.460 33.333 0.00 0.00 35.10 3.55
4221 5247 8.633561 TGATCTCATCTTGTAATGTACTGTAGG 58.366 37.037 0.00 0.00 0.00 3.18
4222 5248 8.768501 ATCTCATCTTGTAATGTACTGTAGGA 57.231 34.615 0.00 0.00 0.00 2.94
4223 5249 8.768501 TCTCATCTTGTAATGTACTGTAGGAT 57.231 34.615 0.00 0.00 0.00 3.24
4224 5250 8.851145 TCTCATCTTGTAATGTACTGTAGGATC 58.149 37.037 0.00 0.00 0.00 3.36
4225 5251 7.649057 TCATCTTGTAATGTACTGTAGGATCG 58.351 38.462 0.00 0.00 0.00 3.69
4226 5252 7.284716 TCATCTTGTAATGTACTGTAGGATCGT 59.715 37.037 0.00 0.00 0.00 3.73
4227 5253 7.024340 TCTTGTAATGTACTGTAGGATCGTC 57.976 40.000 0.00 0.00 0.00 4.20
4228 5254 5.762825 TGTAATGTACTGTAGGATCGTCC 57.237 43.478 0.00 0.00 36.58 4.79
4229 5255 4.581824 TGTAATGTACTGTAGGATCGTCCC 59.418 45.833 0.00 0.00 37.19 4.46
4230 5256 1.671979 TGTACTGTAGGATCGTCCCG 58.328 55.000 0.00 0.00 37.19 5.14
4231 5257 0.950116 GTACTGTAGGATCGTCCCGG 59.050 60.000 0.00 0.00 37.19 5.73
4232 5258 0.548031 TACTGTAGGATCGTCCCGGT 59.452 55.000 0.00 0.00 37.19 5.28
4268 5294 2.608752 GCAGCCATCAAACTTGACCTTG 60.609 50.000 0.00 0.00 40.49 3.61
4280 5306 2.654877 ACCTTGTCGGTAGCCACG 59.345 61.111 0.00 0.00 46.73 4.94
4281 5307 2.205152 ACCTTGTCGGTAGCCACGT 61.205 57.895 0.00 0.00 46.73 4.49
4282 5308 1.736645 CCTTGTCGGTAGCCACGTG 60.737 63.158 9.08 9.08 0.00 4.49
4311 5337 1.269166 GTCACGTGCTTGTCTATCGG 58.731 55.000 11.67 0.00 0.00 4.18
4316 5342 1.854227 GTGCTTGTCTATCGGTAGGC 58.146 55.000 0.00 0.00 33.06 3.93
4319 5345 1.269831 GCTTGTCTATCGGTAGGCCTG 60.270 57.143 17.99 0.00 31.35 4.85
4336 5362 1.197721 CCTGGCTTGTCGTGATCAAAC 59.802 52.381 0.00 0.00 0.00 2.93
4350 5376 5.445142 CGTGATCAAACTTCTGAAAGATCCG 60.445 44.000 0.00 13.10 46.36 4.18
4361 5387 1.464997 GAAAGATCCGTCCAACTGCAC 59.535 52.381 0.00 0.00 0.00 4.57
4401 5427 0.819259 TTCTGTGCACAGGCTGGAAC 60.819 55.000 39.04 12.76 43.91 3.62
4402 5428 2.591429 TGTGCACAGGCTGGAACG 60.591 61.111 17.42 5.31 41.91 3.95
4403 5429 2.591715 GTGCACAGGCTGGAACGT 60.592 61.111 20.34 0.00 41.91 3.99
4404 5430 2.591429 TGCACAGGCTGGAACGTG 60.591 61.111 20.34 8.59 41.91 4.49
4405 5431 2.280797 GCACAGGCTGGAACGTGA 60.281 61.111 20.34 0.00 36.96 4.35
4406 5432 2.320587 GCACAGGCTGGAACGTGAG 61.321 63.158 20.34 0.00 36.96 3.51
4410 5436 2.147387 AGGCTGGAACGTGAGGGTT 61.147 57.895 0.00 0.00 0.00 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.108585 CACGGGGTCATTATGGGGAG 59.891 60.000 0.00 0.00 0.00 4.30
1 2 1.990160 GCACGGGGTCATTATGGGGA 61.990 60.000 0.00 0.00 0.00 4.81
2 3 1.528309 GCACGGGGTCATTATGGGG 60.528 63.158 0.00 0.00 0.00 4.96
3 4 0.106719 AAGCACGGGGTCATTATGGG 60.107 55.000 0.00 0.00 0.00 4.00
4 5 1.024271 CAAGCACGGGGTCATTATGG 58.976 55.000 0.00 0.00 0.00 2.74
5 6 1.750193 ACAAGCACGGGGTCATTATG 58.250 50.000 0.00 0.00 0.00 1.90
6 7 2.745152 GCTACAAGCACGGGGTCATTAT 60.745 50.000 0.00 0.00 41.89 1.28
7 8 1.406341 GCTACAAGCACGGGGTCATTA 60.406 52.381 0.00 0.00 41.89 1.90
8 9 0.676782 GCTACAAGCACGGGGTCATT 60.677 55.000 0.00 0.00 41.89 2.57
9 10 1.078426 GCTACAAGCACGGGGTCAT 60.078 57.895 0.00 0.00 41.89 3.06
10 11 2.345991 GCTACAAGCACGGGGTCA 59.654 61.111 0.00 0.00 41.89 4.02
19 20 7.365840 ACTTTTAGACAGTAATGCTACAAGC 57.634 36.000 14.63 0.00 42.82 4.01
20 21 8.584600 CGTACTTTTAGACAGTAATGCTACAAG 58.415 37.037 13.79 13.79 31.55 3.16
21 22 8.084073 ACGTACTTTTAGACAGTAATGCTACAA 58.916 33.333 0.00 0.00 0.00 2.41
22 23 7.539710 CACGTACTTTTAGACAGTAATGCTACA 59.460 37.037 0.00 0.00 0.00 2.74
23 24 7.462462 GCACGTACTTTTAGACAGTAATGCTAC 60.462 40.741 0.00 0.00 37.74 3.58
24 25 6.529125 GCACGTACTTTTAGACAGTAATGCTA 59.471 38.462 0.00 0.00 37.74 3.49
25 26 5.347907 GCACGTACTTTTAGACAGTAATGCT 59.652 40.000 0.00 0.00 37.74 3.79
26 27 5.347907 AGCACGTACTTTTAGACAGTAATGC 59.652 40.000 0.00 8.53 39.38 3.56
27 28 6.946229 AGCACGTACTTTTAGACAGTAATG 57.054 37.500 0.00 0.00 0.00 1.90
28 29 6.128634 GCAAGCACGTACTTTTAGACAGTAAT 60.129 38.462 0.00 0.00 0.00 1.89
29 30 5.176223 GCAAGCACGTACTTTTAGACAGTAA 59.824 40.000 0.00 0.00 0.00 2.24
30 31 4.682860 GCAAGCACGTACTTTTAGACAGTA 59.317 41.667 0.00 0.00 0.00 2.74
31 32 3.493503 GCAAGCACGTACTTTTAGACAGT 59.506 43.478 0.00 0.00 0.00 3.55
32 33 3.120649 GGCAAGCACGTACTTTTAGACAG 60.121 47.826 0.00 0.00 0.00 3.51
33 34 2.803956 GGCAAGCACGTACTTTTAGACA 59.196 45.455 0.00 0.00 0.00 3.41
34 35 2.803956 TGGCAAGCACGTACTTTTAGAC 59.196 45.455 0.00 0.00 0.00 2.59
35 36 3.114668 TGGCAAGCACGTACTTTTAGA 57.885 42.857 0.00 0.00 0.00 2.10
36 37 5.501715 CATATGGCAAGCACGTACTTTTAG 58.498 41.667 0.00 0.00 0.00 1.85
37 38 4.201871 GCATATGGCAAGCACGTACTTTTA 60.202 41.667 4.56 0.00 43.97 1.52
38 39 3.427503 GCATATGGCAAGCACGTACTTTT 60.428 43.478 4.56 0.00 43.97 2.27
39 40 2.097466 GCATATGGCAAGCACGTACTTT 59.903 45.455 4.56 0.00 43.97 2.66
40 41 1.670811 GCATATGGCAAGCACGTACTT 59.329 47.619 4.56 0.00 43.97 2.24
41 42 1.299541 GCATATGGCAAGCACGTACT 58.700 50.000 4.56 0.00 43.97 2.73
42 43 3.825812 GCATATGGCAAGCACGTAC 57.174 52.632 4.56 0.00 43.97 3.67
52 53 2.736400 GCTTTGTCCAACTGCATATGGC 60.736 50.000 12.00 8.53 45.13 4.40
53 54 2.478370 CGCTTTGTCCAACTGCATATGG 60.478 50.000 10.85 10.85 38.09 2.74
54 55 2.478370 CCGCTTTGTCCAACTGCATATG 60.478 50.000 0.00 0.00 0.00 1.78
55 56 1.745087 CCGCTTTGTCCAACTGCATAT 59.255 47.619 0.00 0.00 0.00 1.78
56 57 1.164411 CCGCTTTGTCCAACTGCATA 58.836 50.000 0.00 0.00 0.00 3.14
57 58 0.537143 TCCGCTTTGTCCAACTGCAT 60.537 50.000 0.00 0.00 0.00 3.96
58 59 0.537143 ATCCGCTTTGTCCAACTGCA 60.537 50.000 0.00 0.00 0.00 4.41
59 60 1.448985 TATCCGCTTTGTCCAACTGC 58.551 50.000 0.00 0.00 0.00 4.40
60 61 4.155826 TGAATTATCCGCTTTGTCCAACTG 59.844 41.667 0.00 0.00 0.00 3.16
61 62 4.331968 TGAATTATCCGCTTTGTCCAACT 58.668 39.130 0.00 0.00 0.00 3.16
62 63 4.695217 TGAATTATCCGCTTTGTCCAAC 57.305 40.909 0.00 0.00 0.00 3.77
63 64 6.119536 AGTATGAATTATCCGCTTTGTCCAA 58.880 36.000 0.00 0.00 0.00 3.53
64 65 5.680619 AGTATGAATTATCCGCTTTGTCCA 58.319 37.500 0.00 0.00 0.00 4.02
65 66 6.929606 AGTAGTATGAATTATCCGCTTTGTCC 59.070 38.462 0.00 0.00 0.00 4.02
66 67 7.948278 AGTAGTATGAATTATCCGCTTTGTC 57.052 36.000 0.00 0.00 0.00 3.18
67 68 8.639761 AGTAGTAGTATGAATTATCCGCTTTGT 58.360 33.333 0.00 0.00 0.00 2.83
68 69 9.477484 AAGTAGTAGTATGAATTATCCGCTTTG 57.523 33.333 0.00 0.00 0.00 2.77
109 110 4.279169 ACCTCAAAACACTCATCCAATGTG 59.721 41.667 0.00 0.00 37.67 3.21
110 111 4.473444 ACCTCAAAACACTCATCCAATGT 58.527 39.130 0.00 0.00 0.00 2.71
115 116 6.228258 TGTTACTACCTCAAAACACTCATCC 58.772 40.000 0.00 0.00 0.00 3.51
122 123 9.268268 CACTTCTAATGTTACTACCTCAAAACA 57.732 33.333 0.00 0.00 36.37 2.83
128 129 7.093858 ACAGTCCACTTCTAATGTTACTACCTC 60.094 40.741 0.00 0.00 0.00 3.85
131 132 8.086522 TCAACAGTCCACTTCTAATGTTACTAC 58.913 37.037 0.00 0.00 30.23 2.73
133 134 7.062749 TCAACAGTCCACTTCTAATGTTACT 57.937 36.000 0.00 0.00 30.23 2.24
135 136 8.918202 AATTCAACAGTCCACTTCTAATGTTA 57.082 30.769 0.00 0.00 30.23 2.41
137 138 7.607991 CCTAATTCAACAGTCCACTTCTAATGT 59.392 37.037 0.00 0.00 0.00 2.71
138 139 7.824289 TCCTAATTCAACAGTCCACTTCTAATG 59.176 37.037 0.00 0.00 0.00 1.90
141 142 6.928348 TCCTAATTCAACAGTCCACTTCTA 57.072 37.500 0.00 0.00 0.00 2.10
145 146 4.755123 CGTTTCCTAATTCAACAGTCCACT 59.245 41.667 0.00 0.00 0.00 4.00
146 147 4.612939 GCGTTTCCTAATTCAACAGTCCAC 60.613 45.833 0.00 0.00 0.00 4.02
147 148 3.500680 GCGTTTCCTAATTCAACAGTCCA 59.499 43.478 0.00 0.00 0.00 4.02
148 149 3.500680 TGCGTTTCCTAATTCAACAGTCC 59.499 43.478 0.00 0.00 0.00 3.85
149 150 4.742438 TGCGTTTCCTAATTCAACAGTC 57.258 40.909 0.00 0.00 0.00 3.51
150 151 5.705609 AATGCGTTTCCTAATTCAACAGT 57.294 34.783 0.00 0.00 0.00 3.55
151 152 6.148948 TCAAATGCGTTTCCTAATTCAACAG 58.851 36.000 0.00 0.00 0.00 3.16
152 153 6.078202 TCAAATGCGTTTCCTAATTCAACA 57.922 33.333 0.00 0.00 0.00 3.33
153 154 6.089417 CCTTCAAATGCGTTTCCTAATTCAAC 59.911 38.462 0.00 0.00 0.00 3.18
158 159 5.010282 AGTCCTTCAAATGCGTTTCCTAAT 58.990 37.500 0.00 0.00 0.00 1.73
159 160 4.394729 AGTCCTTCAAATGCGTTTCCTAA 58.605 39.130 0.00 0.00 0.00 2.69
160 161 4.000988 GAGTCCTTCAAATGCGTTTCCTA 58.999 43.478 0.00 0.00 0.00 2.94
163 164 2.839474 CGAGTCCTTCAAATGCGTTTC 58.161 47.619 0.00 0.00 0.00 2.78
164 165 1.069227 GCGAGTCCTTCAAATGCGTTT 60.069 47.619 0.00 0.00 0.00 3.60
166 167 1.298859 GGCGAGTCCTTCAAATGCGT 61.299 55.000 0.00 0.00 0.00 5.24
167 168 1.425428 GGCGAGTCCTTCAAATGCG 59.575 57.895 0.00 0.00 0.00 4.73
168 169 1.298859 ACGGCGAGTCCTTCAAATGC 61.299 55.000 16.62 0.00 0.00 3.56
170 171 1.892209 AAACGGCGAGTCCTTCAAAT 58.108 45.000 16.62 0.00 0.00 2.32
171 172 2.529780 TAAACGGCGAGTCCTTCAAA 57.470 45.000 16.62 0.00 0.00 2.69
172 173 2.028839 TGATAAACGGCGAGTCCTTCAA 60.029 45.455 16.62 0.00 0.00 2.69
173 174 1.546923 TGATAAACGGCGAGTCCTTCA 59.453 47.619 16.62 5.91 0.00 3.02
174 175 2.159282 TCTGATAAACGGCGAGTCCTTC 60.159 50.000 16.62 3.12 0.00 3.46
176 177 1.471119 TCTGATAAACGGCGAGTCCT 58.529 50.000 16.62 0.00 0.00 3.85
177 178 2.510768 ATCTGATAAACGGCGAGTCC 57.489 50.000 16.62 0.00 0.00 3.85
178 179 3.982058 CCTTATCTGATAAACGGCGAGTC 59.018 47.826 16.62 6.27 0.00 3.36
180 181 4.238761 TCCTTATCTGATAAACGGCGAG 57.761 45.455 16.62 0.00 0.00 5.03
207 881 9.905713 AGAGTCCTTCAAATGCATTTAGTATAA 57.094 29.630 23.69 12.02 0.00 0.98
209 883 7.500559 GGAGAGTCCTTCAAATGCATTTAGTAT 59.499 37.037 23.69 8.73 32.53 2.12
210 884 6.823689 GGAGAGTCCTTCAAATGCATTTAGTA 59.176 38.462 23.69 10.20 32.53 1.82
211 885 5.649831 GGAGAGTCCTTCAAATGCATTTAGT 59.350 40.000 23.69 11.21 32.53 2.24
212 886 5.220739 CGGAGAGTCCTTCAAATGCATTTAG 60.221 44.000 23.69 17.74 33.30 1.85
214 888 3.441572 CGGAGAGTCCTTCAAATGCATTT 59.558 43.478 18.99 18.99 33.30 2.32
215 889 3.012518 CGGAGAGTCCTTCAAATGCATT 58.987 45.455 5.99 5.99 33.30 3.56
268 942 1.225745 CGATTTCGGCGTCAACAGC 60.226 57.895 6.85 0.00 35.37 4.40
295 969 1.299541 CGAGGTGATTATGTGGGTGC 58.700 55.000 0.00 0.00 0.00 5.01
314 988 2.087009 CGAGCCGGTCAAAGACGAC 61.087 63.158 1.90 0.00 32.65 4.34
317 991 3.479269 CGCGAGCCGGTCAAAGAC 61.479 66.667 0.00 0.00 0.00 3.01
334 1008 2.887568 CGGAGTGACGATGCTGCC 60.888 66.667 0.00 0.00 35.47 4.85
377 1051 3.016474 GCGGCAGCGTCAAGAGAAC 62.016 63.158 0.00 0.00 0.00 3.01
413 1087 0.452184 TCAGTCGAGCGTTGATCCTC 59.548 55.000 0.00 0.00 0.00 3.71
414 1088 0.453793 CTCAGTCGAGCGTTGATCCT 59.546 55.000 0.00 0.00 31.00 3.24
415 1089 2.950877 CTCAGTCGAGCGTTGATCC 58.049 57.895 0.00 0.00 31.00 3.36
427 1101 0.391228 GCTTAGGCCTAGGCTCAGTC 59.609 60.000 33.40 15.91 39.70 3.51
445 1119 0.035725 ACGGTTGGTTAGGCTTAGGC 60.036 55.000 0.00 0.00 37.82 3.93
447 1121 2.289195 TGACACGGTTGGTTAGGCTTAG 60.289 50.000 0.00 0.00 0.00 2.18
448 1122 1.693062 TGACACGGTTGGTTAGGCTTA 59.307 47.619 0.00 0.00 0.00 3.09
449 1123 0.470766 TGACACGGTTGGTTAGGCTT 59.529 50.000 0.00 0.00 0.00 4.35
450 1124 0.250166 GTGACACGGTTGGTTAGGCT 60.250 55.000 0.00 0.00 0.00 4.58
453 1127 0.604511 GGGGTGACACGGTTGGTTAG 60.605 60.000 0.00 0.00 0.00 2.34
454 1128 1.451072 GGGGTGACACGGTTGGTTA 59.549 57.895 0.00 0.00 0.00 2.85
456 1130 3.881104 GGGGGTGACACGGTTGGT 61.881 66.667 0.00 0.00 0.00 3.67
501 1176 2.440065 GGACGGATTGGCATGCCA 60.440 61.111 35.59 35.59 45.63 4.92
502 1177 3.219198 GGGACGGATTGGCATGCC 61.219 66.667 30.54 30.54 0.00 4.40
503 1178 3.219198 GGGGACGGATTGGCATGC 61.219 66.667 9.90 9.90 0.00 4.06
582 1272 0.759060 GAGGGAGGGAGGAAGAGAGC 60.759 65.000 0.00 0.00 0.00 4.09
585 1275 1.074850 GGGAGGGAGGGAGGAAGAG 60.075 68.421 0.00 0.00 0.00 2.85
586 1276 1.550374 AGGGAGGGAGGGAGGAAGA 60.550 63.158 0.00 0.00 0.00 2.87
587 1277 1.074850 GAGGGAGGGAGGGAGGAAG 60.075 68.421 0.00 0.00 0.00 3.46
588 1278 2.647949 GGAGGGAGGGAGGGAGGAA 61.648 68.421 0.00 0.00 0.00 3.36
589 1279 3.036959 GGAGGGAGGGAGGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
594 1284 4.548513 CCGAGGGAGGGAGGGAGG 62.549 77.778 0.00 0.00 0.00 4.30
614 1312 3.474570 GCCTGGTCGATCTGGCCT 61.475 66.667 30.54 0.00 43.28 5.19
646 1351 1.941734 GCGATCGCGTCCTCTTCTG 60.942 63.158 26.12 0.00 40.36 3.02
649 1354 1.589993 CATGCGATCGCGTCCTCTT 60.590 57.895 30.95 8.64 45.51 2.85
658 1363 2.252127 AAACAACGGGCATGCGATCG 62.252 55.000 19.93 19.93 0.00 3.69
659 1364 0.730265 TAAACAACGGGCATGCGATC 59.270 50.000 12.44 2.87 0.00 3.69
660 1365 0.732571 CTAAACAACGGGCATGCGAT 59.267 50.000 12.44 0.00 0.00 4.58
661 1366 0.604243 ACTAAACAACGGGCATGCGA 60.604 50.000 12.44 0.00 0.00 5.10
662 1367 0.179200 GACTAAACAACGGGCATGCG 60.179 55.000 12.44 0.62 0.00 4.73
663 1368 0.179200 CGACTAAACAACGGGCATGC 60.179 55.000 9.90 9.90 0.00 4.06
664 1369 1.127951 GTCGACTAAACAACGGGCATG 59.872 52.381 8.70 0.00 0.00 4.06
665 1370 1.435577 GTCGACTAAACAACGGGCAT 58.564 50.000 8.70 0.00 0.00 4.40
726 1431 3.706373 CAGGGTGAGGGTGGTCCG 61.706 72.222 0.00 0.00 41.52 4.79
727 1432 3.330720 CCAGGGTGAGGGTGGTCC 61.331 72.222 0.00 0.00 0.00 4.46
728 1433 2.529389 ACCAGGGTGAGGGTGGTC 60.529 66.667 0.00 0.00 40.78 4.02
740 1445 3.933048 CTCTTGGGCTGGCACCAGG 62.933 68.421 18.14 4.49 43.77 4.45
777 1492 3.420893 AGACAAGAGTGACAGAGAGAGG 58.579 50.000 0.00 0.00 0.00 3.69
847 1562 0.739112 GGGCGAAAGAGACAGCAGAG 60.739 60.000 0.00 0.00 0.00 3.35
848 1563 1.293498 GGGCGAAAGAGACAGCAGA 59.707 57.895 0.00 0.00 0.00 4.26
851 1566 2.436824 GGGGGCGAAAGAGACAGC 60.437 66.667 0.00 0.00 0.00 4.40
887 1602 5.505173 TCTTGGCTGAAAGAAAGAAACAG 57.495 39.130 0.00 0.00 35.90 3.16
892 1607 3.808618 GCTCCTCTTGGCTGAAAGAAAGA 60.809 47.826 0.00 0.00 36.30 2.52
893 1608 2.487372 GCTCCTCTTGGCTGAAAGAAAG 59.513 50.000 0.00 0.00 35.79 2.62
894 1609 2.508526 GCTCCTCTTGGCTGAAAGAAA 58.491 47.619 0.00 0.00 35.79 2.52
895 1610 1.609061 CGCTCCTCTTGGCTGAAAGAA 60.609 52.381 0.00 0.00 35.79 2.52
907 1622 0.037232 GCCTGTTTACACGCTCCTCT 60.037 55.000 0.00 0.00 0.00 3.69
910 1625 0.320421 TCTGCCTGTTTACACGCTCC 60.320 55.000 5.66 0.00 0.00 4.70
912 1627 0.105964 TGTCTGCCTGTTTACACGCT 59.894 50.000 5.66 0.00 0.00 5.07
924 1639 2.985456 CCTCCTCACCTGTCTGCC 59.015 66.667 0.00 0.00 0.00 4.85
962 1677 0.252467 CTCCTGTCCAACCTCTCCCT 60.252 60.000 0.00 0.00 0.00 4.20
975 1690 2.292192 CCTCTCTTCCTTCTCCTCCTGT 60.292 54.545 0.00 0.00 0.00 4.00
976 1691 2.387757 CCTCTCTTCCTTCTCCTCCTG 58.612 57.143 0.00 0.00 0.00 3.86
977 1692 1.290732 CCCTCTCTTCCTTCTCCTCCT 59.709 57.143 0.00 0.00 0.00 3.69
978 1693 1.289530 TCCCTCTCTTCCTTCTCCTCC 59.710 57.143 0.00 0.00 0.00 4.30
1188 1913 2.859165 ACAGGACGAACATGGACAAT 57.141 45.000 0.00 0.00 34.35 2.71
1189 1914 2.631160 AACAGGACGAACATGGACAA 57.369 45.000 0.00 0.00 34.35 3.18
1190 1915 3.755112 TTAACAGGACGAACATGGACA 57.245 42.857 0.00 0.00 34.35 4.02
1191 1916 5.622770 AAATTAACAGGACGAACATGGAC 57.377 39.130 0.00 0.00 34.35 4.02
1192 1917 6.488683 AGAAAAATTAACAGGACGAACATGGA 59.511 34.615 0.00 0.00 34.35 3.41
1193 1918 6.677913 AGAAAAATTAACAGGACGAACATGG 58.322 36.000 0.00 0.00 34.35 3.66
1194 1919 8.076178 AGAAGAAAAATTAACAGGACGAACATG 58.924 33.333 0.00 0.00 36.29 3.21
1195 1920 8.166422 AGAAGAAAAATTAACAGGACGAACAT 57.834 30.769 0.00 0.00 0.00 2.71
1204 1929 7.201266 CGATGCCGAAAGAAGAAAAATTAACAG 60.201 37.037 0.00 0.00 38.22 3.16
1244 1970 1.202302 TGAGACGACGCCAGATGAATC 60.202 52.381 0.00 0.00 0.00 2.52
1256 1982 5.659048 AAGACACAAATTTCTGAGACGAC 57.341 39.130 0.01 0.00 0.00 4.34
1296 2023 9.874205 AACAAGAAAGAAAAATCATGTTGAGAA 57.126 25.926 0.00 0.00 36.47 2.87
1384 2148 4.346709 TGATGAGGACACACTTAGGAACAA 59.653 41.667 0.00 0.00 0.00 2.83
1392 2156 7.605449 CCATTAATTTTGATGAGGACACACTT 58.395 34.615 0.00 0.00 0.00 3.16
1446 2215 3.248602 GCCTATAGACAATGCGTCCTTTG 59.751 47.826 0.00 0.00 46.69 2.77
1464 2233 5.249780 TCATTTGGTACTCTTTTGGCCTA 57.750 39.130 3.32 0.00 0.00 3.93
1465 2234 4.112634 TCATTTGGTACTCTTTTGGCCT 57.887 40.909 3.32 0.00 0.00 5.19
1478 2247 3.322254 TGGCCATTACGTTTTCATTTGGT 59.678 39.130 0.00 0.00 0.00 3.67
1479 2248 3.919216 TGGCCATTACGTTTTCATTTGG 58.081 40.909 0.00 0.00 0.00 3.28
1480 2249 7.254387 CCATAATGGCCATTACGTTTTCATTTG 60.254 37.037 35.00 24.50 36.24 2.32
1513 2282 8.170553 CACTCCAAACAAAACAAAAAGAAGATG 58.829 33.333 0.00 0.00 0.00 2.90
1556 2325 6.535508 CAGTAGGTAAAGGAAGCAGTATTGAC 59.464 42.308 0.00 0.00 0.00 3.18
1602 2371 5.086058 CACAATCGTTAGAAATGGTTTCCG 58.914 41.667 0.00 0.00 40.54 4.30
1702 2471 3.455619 GGAAACGAGTTGTGCATACTG 57.544 47.619 8.93 5.03 0.00 2.74
1721 2675 2.808543 GCAATCTACTAATCTTGGGCGG 59.191 50.000 0.00 0.00 0.00 6.13
1726 2680 7.558161 TTGTCATGGCAATCTACTAATCTTG 57.442 36.000 9.09 0.00 0.00 3.02
1740 2695 2.364970 CACTTCCCTTTTTGTCATGGCA 59.635 45.455 0.00 0.00 0.00 4.92
1742 2697 3.005791 GGACACTTCCCTTTTTGTCATGG 59.994 47.826 3.23 0.00 40.18 3.66
1746 2701 3.020984 TGTGGACACTTCCCTTTTTGTC 58.979 45.455 3.91 0.00 42.01 3.18
1748 2703 3.436700 GTGTGGACACTTCCCTTTTTG 57.563 47.619 2.53 0.00 42.01 2.44
1799 2756 7.044798 TCCAGGAAAATTGGTTTTGTTACTTG 58.955 34.615 0.00 0.00 37.65 3.16
1800 2757 7.189079 TCCAGGAAAATTGGTTTTGTTACTT 57.811 32.000 0.00 0.00 37.65 2.24
1828 2785 8.543862 AAAGATAACTAACTGAAAACTACCGG 57.456 34.615 0.00 0.00 0.00 5.28
1829 2786 9.199982 TGAAAGATAACTAACTGAAAACTACCG 57.800 33.333 0.00 0.00 0.00 4.02
1833 2790 7.929785 TCGGTGAAAGATAACTAACTGAAAACT 59.070 33.333 0.00 0.00 0.00 2.66
1839 2796 7.957484 CACATTTCGGTGAAAGATAACTAACTG 59.043 37.037 0.00 0.00 41.32 3.16
1841 2798 8.025243 TCACATTTCGGTGAAAGATAACTAAC 57.975 34.615 0.00 0.00 44.34 2.34
1865 2822 8.855279 GTGCGATGAAGAAATATACTCTACATC 58.145 37.037 0.00 0.00 0.00 3.06
1871 2828 7.881643 ATCAGTGCGATGAAGAAATATACTC 57.118 36.000 0.00 0.00 31.20 2.59
1884 2841 4.641954 GTGTCAAGTAAATCAGTGCGATG 58.358 43.478 0.00 0.00 33.40 3.84
1888 2845 3.987868 TCTCGTGTCAAGTAAATCAGTGC 59.012 43.478 0.00 0.00 0.00 4.40
1934 2901 0.888736 CACCACCAGCGTCCATGAAA 60.889 55.000 0.00 0.00 0.00 2.69
1936 2903 1.763546 TTCACCACCAGCGTCCATGA 61.764 55.000 0.00 0.00 0.00 3.07
1937 2904 1.302431 TTCACCACCAGCGTCCATG 60.302 57.895 0.00 0.00 0.00 3.66
1939 2906 2.110213 GTTCACCACCAGCGTCCA 59.890 61.111 0.00 0.00 0.00 4.02
2035 3002 2.910479 TCCGTCTCGTGCAGGTGT 60.910 61.111 6.26 0.00 0.00 4.16
2227 3194 1.430632 GATGAGCATGGCCACGTTG 59.569 57.895 8.16 3.33 0.00 4.10
2788 3755 4.908877 GACGAGTAGAGCGCCGCC 62.909 72.222 4.98 0.00 0.00 6.13
2803 3770 1.227263 CGACCCCGTGATGATGGAC 60.227 63.158 0.00 0.00 0.00 4.02
3403 4370 3.667360 TGGATCGATCTATTCCGACGTA 58.333 45.455 23.96 0.00 37.64 3.57
3437 4404 8.559536 ACCTGCATTGTAATGTAAATCTTATCG 58.440 33.333 6.48 0.00 38.65 2.92
3438 4405 9.669353 CACCTGCATTGTAATGTAAATCTTATC 57.331 33.333 6.48 0.00 38.65 1.75
3458 4425 2.464459 GCACGACCTATGCACCTGC 61.464 63.158 0.00 0.00 42.88 4.85
3459 4426 0.459899 TAGCACGACCTATGCACCTG 59.540 55.000 0.00 0.00 45.92 4.00
3460 4427 1.414158 ATAGCACGACCTATGCACCT 58.586 50.000 0.00 0.00 45.92 4.00
3489 4462 5.065988 GTCTTGGACAAGTTAACACACACAT 59.934 40.000 8.61 0.00 39.38 3.21
3624 4600 1.525197 AGCACAACGTAATGTCACACG 59.475 47.619 7.15 7.15 43.63 4.49
3668 4650 3.555956 AGAACGAGACAACACACACATTC 59.444 43.478 0.00 0.00 0.00 2.67
3670 4652 2.866156 CAGAACGAGACAACACACACAT 59.134 45.455 0.00 0.00 0.00 3.21
3689 4686 6.902224 TCATTACGTTACCATGACATTCAG 57.098 37.500 0.00 0.00 0.00 3.02
3760 4762 8.467402 AAAATCTGTAGTCGTGTTCAGATAAG 57.533 34.615 12.94 0.00 43.80 1.73
3787 4789 0.662619 CGCTTTGACTGCAAACCAGA 59.337 50.000 0.00 0.00 44.64 3.86
3789 4791 1.732917 CCGCTTTGACTGCAAACCA 59.267 52.632 0.00 0.00 38.99 3.67
3911 4924 3.584406 ACAGATTCATCTCTGACCCACAA 59.416 43.478 8.01 0.00 44.48 3.33
3912 4925 3.176411 ACAGATTCATCTCTGACCCACA 58.824 45.455 8.01 0.00 44.48 4.17
3954 4968 0.716108 GTCACCAGATTTGACGCTCG 59.284 55.000 0.00 0.00 34.41 5.03
4023 5037 8.522830 TGAAAGAAAGCCACTTAAAATATCAGG 58.477 33.333 0.00 0.00 0.00 3.86
4057 5071 0.669932 CTAGGATGCTCGCTGCCATC 60.670 60.000 8.34 8.34 42.00 3.51
4102 5128 4.627035 GGTTGACTTGAGGCAAATTTATGC 59.373 41.667 0.00 0.00 45.67 3.14
4103 5129 6.029346 AGGTTGACTTGAGGCAAATTTATG 57.971 37.500 0.00 0.00 0.00 1.90
4104 5130 5.106157 CGAGGTTGACTTGAGGCAAATTTAT 60.106 40.000 0.00 0.00 31.73 1.40
4135 5161 2.649331 AACGAAGCGCATACACTACT 57.351 45.000 11.47 0.00 0.00 2.57
4148 5174 4.806247 AGTGACACAAGAGAAGAAACGAAG 59.194 41.667 8.59 0.00 0.00 3.79
4184 5210 5.879223 ACAAGATGAGATCATTCAGAACACC 59.121 40.000 0.00 0.00 36.57 4.16
4189 5215 9.755804 GTACATTACAAGATGAGATCATTCAGA 57.244 33.333 0.00 0.00 36.57 3.27
4190 5216 9.761504 AGTACATTACAAGATGAGATCATTCAG 57.238 33.333 0.00 0.00 36.57 3.02
4191 5217 9.538508 CAGTACATTACAAGATGAGATCATTCA 57.461 33.333 0.00 0.00 36.57 2.57
4192 5218 9.539825 ACAGTACATTACAAGATGAGATCATTC 57.460 33.333 0.00 0.00 36.57 2.67
4195 5221 8.633561 CCTACAGTACATTACAAGATGAGATCA 58.366 37.037 0.00 0.00 0.00 2.92
4196 5222 8.851145 TCCTACAGTACATTACAAGATGAGATC 58.149 37.037 0.00 0.00 0.00 2.75
4197 5223 8.768501 TCCTACAGTACATTACAAGATGAGAT 57.231 34.615 0.00 0.00 0.00 2.75
4198 5224 8.768501 ATCCTACAGTACATTACAAGATGAGA 57.231 34.615 0.00 0.00 0.00 3.27
4199 5225 7.805542 CGATCCTACAGTACATTACAAGATGAG 59.194 40.741 0.00 0.00 0.00 2.90
4200 5226 7.284716 ACGATCCTACAGTACATTACAAGATGA 59.715 37.037 0.00 0.00 0.00 2.92
4201 5227 7.426410 ACGATCCTACAGTACATTACAAGATG 58.574 38.462 0.00 0.00 0.00 2.90
4202 5228 7.255520 GGACGATCCTACAGTACATTACAAGAT 60.256 40.741 0.00 0.00 32.53 2.40
4203 5229 6.039047 GGACGATCCTACAGTACATTACAAGA 59.961 42.308 0.00 0.00 32.53 3.02
4204 5230 6.207213 GGACGATCCTACAGTACATTACAAG 58.793 44.000 0.00 0.00 32.53 3.16
4205 5231 5.068198 GGGACGATCCTACAGTACATTACAA 59.932 44.000 0.00 0.00 36.57 2.41
4206 5232 4.581824 GGGACGATCCTACAGTACATTACA 59.418 45.833 0.00 0.00 36.57 2.41
4207 5233 5.118642 GGGACGATCCTACAGTACATTAC 57.881 47.826 0.00 0.00 36.57 1.89
4225 5251 4.201920 GCAAAGAGATTAATCAACCGGGAC 60.202 45.833 17.56 0.00 0.00 4.46
4226 5252 3.945285 GCAAAGAGATTAATCAACCGGGA 59.055 43.478 17.56 0.00 0.00 5.14
4227 5253 3.694072 TGCAAAGAGATTAATCAACCGGG 59.306 43.478 17.56 0.00 0.00 5.73
4228 5254 4.731773 GCTGCAAAGAGATTAATCAACCGG 60.732 45.833 17.56 0.00 0.00 5.28
4229 5255 4.346129 GCTGCAAAGAGATTAATCAACCG 58.654 43.478 17.56 3.38 0.00 4.44
4230 5256 4.158394 TGGCTGCAAAGAGATTAATCAACC 59.842 41.667 17.56 6.36 0.00 3.77
4231 5257 5.314923 TGGCTGCAAAGAGATTAATCAAC 57.685 39.130 17.56 10.66 0.00 3.18
4232 5258 5.653330 TGATGGCTGCAAAGAGATTAATCAA 59.347 36.000 17.56 0.00 0.00 2.57
4268 5294 1.076533 CACATCACGTGGCTACCGAC 61.077 60.000 17.00 0.00 42.34 4.79
4280 5306 1.702886 CACGTGACCTCTCACATCAC 58.297 55.000 10.90 0.00 46.47 3.06
4281 5307 0.038251 GCACGTGACCTCTCACATCA 60.038 55.000 22.23 0.00 46.47 3.07
4282 5308 0.244994 AGCACGTGACCTCTCACATC 59.755 55.000 22.23 0.00 46.47 3.06
4288 5314 1.617322 TAGACAAGCACGTGACCTCT 58.383 50.000 22.23 14.24 0.00 3.69
4289 5315 2.531206 GATAGACAAGCACGTGACCTC 58.469 52.381 22.23 7.28 0.00 3.85
4290 5316 1.135373 CGATAGACAAGCACGTGACCT 60.135 52.381 22.23 4.53 39.76 3.85
4292 5318 1.269166 CCGATAGACAAGCACGTGAC 58.731 55.000 22.23 10.94 39.76 3.67
4296 5322 1.864435 GCCTACCGATAGACAAGCACG 60.864 57.143 0.00 0.00 39.76 5.34
4299 5325 1.041437 AGGCCTACCGATAGACAAGC 58.959 55.000 1.29 0.00 42.76 4.01
4311 5337 1.741770 CACGACAAGCCAGGCCTAC 60.742 63.158 3.98 0.00 0.00 3.18
4316 5342 1.197721 GTTTGATCACGACAAGCCAGG 59.802 52.381 0.00 0.00 0.00 4.45
4319 5345 2.808543 AGAAGTTTGATCACGACAAGCC 59.191 45.455 0.00 0.00 0.00 4.35
4336 5362 3.681897 CAGTTGGACGGATCTTTCAGAAG 59.318 47.826 0.00 0.00 0.00 2.85
4361 5387 3.675619 CTCGCTACAAACCCGGGGG 62.676 68.421 27.92 16.63 42.03 5.40
4376 5402 1.287730 GCCTGTGCACAGAAGACTCG 61.288 60.000 41.50 25.89 46.59 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.