Multiple sequence alignment - TraesCS5A01G182400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G182400 chr5A 100.000 3235 0 0 1 3235 382103376 382106610 0.000000e+00 5975
1 TraesCS5A01G182400 chr5A 98.537 205 2 1 1 204 659939311 659939515 8.530000e-96 361
2 TraesCS5A01G182400 chr5A 98.049 205 3 1 1 204 659946272 659946476 3.970000e-94 355
3 TraesCS5A01G182400 chr5A 100.000 100 0 0 3136 3235 444900330 444900231 5.510000e-43 185
4 TraesCS5A01G182400 chr5D 94.256 2089 75 27 218 2277 288577866 288579938 0.000000e+00 3151
5 TraesCS5A01G182400 chr5D 91.728 810 47 4 2344 3135 288579958 288580765 0.000000e+00 1107
6 TraesCS5A01G182400 chr5B 91.331 2111 123 28 205 2278 328188836 328190923 0.000000e+00 2830
7 TraesCS5A01G182400 chr5B 92.963 810 37 3 2344 3136 328190941 328191747 0.000000e+00 1162
8 TraesCS5A01G182400 chr5B 96.040 101 3 1 3136 3235 274461681 274461781 2.580000e-36 163
9 TraesCS5A01G182400 chr5B 95.050 101 4 1 3136 3235 274349968 274350068 1.200000e-34 158
10 TraesCS5A01G182400 chr3A 98.544 206 2 1 1 205 59027691 59027896 2.370000e-96 363
11 TraesCS5A01G182400 chr3A 98.058 206 3 1 1 205 704681239 704681444 1.100000e-94 357
12 TraesCS5A01G182400 chr3A 92.941 85 4 2 2278 2361 555313489 555313406 4.380000e-24 122
13 TraesCS5A01G182400 chr1A 97.608 209 4 1 1 208 7724457 7724249 1.100000e-94 357
14 TraesCS5A01G182400 chr1A 96.053 76 2 1 2278 2353 538399351 538399277 4.380000e-24 122
15 TraesCS5A01G182400 chr7A 98.049 205 3 1 1 204 601967468 601967264 3.970000e-94 355
16 TraesCS5A01G182400 chr7A 93.069 101 6 1 3136 3235 162406391 162406491 2.600000e-31 147
17 TraesCS5A01G182400 chr6A 98.049 205 3 1 1 204 130586896 130586692 3.970000e-94 355
18 TraesCS5A01G182400 chr2A 98.049 205 3 1 1 204 736268299 736268095 3.970000e-94 355
19 TraesCS5A01G182400 chr2A 95.413 218 8 2 1 217 716202362 716202578 2.390000e-91 346
20 TraesCS5A01G182400 chr2A 97.297 74 0 2 2278 2351 286445984 286446055 1.220000e-24 124
21 TraesCS5A01G182400 chr7D 97.030 101 2 1 3136 3235 592817293 592817393 5.550000e-38 169
22 TraesCS5A01G182400 chr2D 96.040 101 3 1 3136 3235 537418339 537418439 2.580000e-36 163
23 TraesCS5A01G182400 chr2D 96.040 101 3 1 3136 3235 561051789 561051689 2.580000e-36 163
24 TraesCS5A01G182400 chr1B 95.050 101 4 1 3136 3235 662721746 662721646 1.200000e-34 158
25 TraesCS5A01G182400 chr1B 96.203 79 2 1 2278 2356 33923127 33923050 9.420000e-26 128
26 TraesCS5A01G182400 chr1B 96.203 79 1 2 2278 2354 440489585 440489663 9.420000e-26 128
27 TraesCS5A01G182400 chr4A 97.368 76 2 0 2278 2353 674757785 674757710 2.620000e-26 130
28 TraesCS5A01G182400 chr2B 93.103 87 5 1 2278 2363 201468515 201468429 3.390000e-25 126
29 TraesCS5A01G182400 chr2B 100.000 68 0 0 2278 2345 423659776 423659843 3.390000e-25 126
30 TraesCS5A01G182400 chr6B 92.857 84 4 2 2270 2352 64696133 64696051 1.580000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G182400 chr5A 382103376 382106610 3234 False 5975 5975 100.000 1 3235 1 chr5A.!!$F1 3234
1 TraesCS5A01G182400 chr5D 288577866 288580765 2899 False 2129 3151 92.992 218 3135 2 chr5D.!!$F1 2917
2 TraesCS5A01G182400 chr5B 328188836 328191747 2911 False 1996 2830 92.147 205 3136 2 chr5B.!!$F3 2931

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.0 3.79 3.79 38.76 3.96 F
167 168 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.0 15.81 0.00 43.20 4.57 F
225 226 0.559205 TAGGCTCTCCGATTGGGGTA 59.441 55.0 0.00 0.00 36.91 3.69 F
333 334 1.713297 ACTCGGCCCCGACTTATATT 58.287 50.0 5.12 0.00 44.01 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1227 1269 3.057736 AGCAGCAAAGCAGATTGTAGTTG 60.058 43.478 0.0 0.0 36.85 3.16 R
2087 2132 4.710324 TGGGTAATCTAAAATAGTGCCCG 58.290 43.478 0.0 0.0 36.48 6.13 R
2141 2186 7.116948 ACATCGTACAAACAGAAATCAGAGAAG 59.883 37.037 0.0 0.0 0.00 2.85 R
2312 2357 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.0 0.0 45.94 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.491581 AACGTGTGCTAGAACTCGG 57.508 52.632 24.99 10.58 40.39 4.63
19 20 0.956633 AACGTGTGCTAGAACTCGGA 59.043 50.000 24.99 0.00 40.39 4.55
20 21 0.522180 ACGTGTGCTAGAACTCGGAG 59.478 55.000 24.99 2.83 40.39 4.63
21 22 0.179161 CGTGTGCTAGAACTCGGAGG 60.179 60.000 16.08 0.00 34.36 4.30
22 23 0.889306 GTGTGCTAGAACTCGGAGGT 59.111 55.000 10.23 1.51 0.00 3.85
23 24 0.888619 TGTGCTAGAACTCGGAGGTG 59.111 55.000 10.23 0.00 0.00 4.00
24 25 0.458716 GTGCTAGAACTCGGAGGTGC 60.459 60.000 10.23 3.39 0.00 5.01
25 26 1.142097 GCTAGAACTCGGAGGTGCC 59.858 63.158 10.23 0.00 0.00 5.01
34 35 4.180496 GGAGGTGCCGTAGTTTCG 57.820 61.111 0.00 0.00 0.00 3.46
42 43 3.204505 CCGTAGTTTCGGTGCTTGA 57.795 52.632 0.00 0.00 44.77 3.02
43 44 1.722011 CCGTAGTTTCGGTGCTTGAT 58.278 50.000 0.00 0.00 44.77 2.57
44 45 1.659098 CCGTAGTTTCGGTGCTTGATC 59.341 52.381 0.00 0.00 44.77 2.92
45 46 2.333926 CGTAGTTTCGGTGCTTGATCA 58.666 47.619 0.00 0.00 0.00 2.92
46 47 2.345641 CGTAGTTTCGGTGCTTGATCAG 59.654 50.000 0.00 0.00 0.00 2.90
47 48 2.550830 AGTTTCGGTGCTTGATCAGT 57.449 45.000 0.00 0.00 0.00 3.41
48 49 2.417719 AGTTTCGGTGCTTGATCAGTC 58.582 47.619 0.00 0.00 0.00 3.51
49 50 1.126846 GTTTCGGTGCTTGATCAGTCG 59.873 52.381 0.00 0.00 0.00 4.18
50 51 0.389817 TTCGGTGCTTGATCAGTCGG 60.390 55.000 0.00 0.00 0.00 4.79
51 52 1.811266 CGGTGCTTGATCAGTCGGG 60.811 63.158 0.00 0.00 0.00 5.14
52 53 2.109126 GGTGCTTGATCAGTCGGGC 61.109 63.158 0.00 0.00 0.00 6.13
53 54 2.109126 GTGCTTGATCAGTCGGGCC 61.109 63.158 0.00 0.00 0.00 5.80
54 55 2.892425 GCTTGATCAGTCGGGCCG 60.892 66.667 22.51 22.51 0.00 6.13
55 56 2.579201 CTTGATCAGTCGGGCCGT 59.421 61.111 27.32 5.58 0.00 5.68
56 57 1.811266 CTTGATCAGTCGGGCCGTG 60.811 63.158 27.32 18.19 0.00 4.94
57 58 2.225791 CTTGATCAGTCGGGCCGTGA 62.226 60.000 27.32 23.13 0.00 4.35
58 59 1.822114 TTGATCAGTCGGGCCGTGAA 61.822 55.000 27.32 10.60 0.00 3.18
59 60 1.519455 GATCAGTCGGGCCGTGAAG 60.519 63.158 27.32 14.36 0.00 3.02
60 61 1.945354 GATCAGTCGGGCCGTGAAGA 61.945 60.000 27.32 19.07 0.00 2.87
61 62 2.227089 ATCAGTCGGGCCGTGAAGAC 62.227 60.000 27.32 16.36 0.00 3.01
62 63 4.052229 AGTCGGGCCGTGAAGACG 62.052 66.667 27.32 0.00 45.67 4.18
63 64 4.353437 GTCGGGCCGTGAAGACGT 62.353 66.667 27.32 0.00 44.54 4.34
64 65 2.672651 TCGGGCCGTGAAGACGTA 60.673 61.111 27.32 0.00 44.54 3.57
65 66 2.505557 CGGGCCGTGAAGACGTAC 60.506 66.667 19.97 0.00 44.54 3.67
66 67 2.505557 GGGCCGTGAAGACGTACG 60.506 66.667 15.01 15.01 44.54 3.67
67 68 2.562912 GGCCGTGAAGACGTACGA 59.437 61.111 24.41 0.00 44.54 3.43
68 69 1.799121 GGCCGTGAAGACGTACGAC 60.799 63.158 24.41 16.77 44.54 4.34
69 70 1.208614 GCCGTGAAGACGTACGACT 59.791 57.895 24.41 19.11 44.54 4.18
70 71 0.443869 GCCGTGAAGACGTACGACTA 59.556 55.000 24.41 3.99 44.54 2.59
71 72 1.788344 GCCGTGAAGACGTACGACTAC 60.788 57.143 24.41 15.53 44.54 2.73
72 73 1.460743 CCGTGAAGACGTACGACTACA 59.539 52.381 24.41 13.28 44.54 2.74
73 74 2.094894 CCGTGAAGACGTACGACTACAT 59.905 50.000 24.41 6.17 44.54 2.29
74 75 3.340552 CGTGAAGACGTACGACTACATC 58.659 50.000 24.41 15.62 42.54 3.06
75 76 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
76 77 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
77 78 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
78 79 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
79 80 3.076621 AGACGTACGACTACATCAACCA 58.923 45.455 24.41 0.00 0.00 3.67
80 81 3.503363 AGACGTACGACTACATCAACCAA 59.497 43.478 24.41 0.00 0.00 3.67
81 82 3.829948 ACGTACGACTACATCAACCAAG 58.170 45.455 24.41 0.00 0.00 3.61
82 83 3.254166 ACGTACGACTACATCAACCAAGT 59.746 43.478 24.41 0.00 0.00 3.16
83 84 4.232221 CGTACGACTACATCAACCAAGTT 58.768 43.478 10.44 0.00 0.00 2.66
84 85 5.048782 ACGTACGACTACATCAACCAAGTTA 60.049 40.000 24.41 0.00 0.00 2.24
85 86 5.858049 CGTACGACTACATCAACCAAGTTAA 59.142 40.000 10.44 0.00 0.00 2.01
86 87 6.183359 CGTACGACTACATCAACCAAGTTAAC 60.183 42.308 10.44 0.00 0.00 2.01
87 88 4.682860 ACGACTACATCAACCAAGTTAACG 59.317 41.667 0.00 0.00 0.00 3.18
88 89 4.433805 CGACTACATCAACCAAGTTAACGC 60.434 45.833 0.00 0.00 0.00 4.84
89 90 4.638304 ACTACATCAACCAAGTTAACGCT 58.362 39.130 0.00 0.00 0.00 5.07
90 91 4.689345 ACTACATCAACCAAGTTAACGCTC 59.311 41.667 0.00 0.00 0.00 5.03
91 92 2.812011 ACATCAACCAAGTTAACGCTCC 59.188 45.455 0.00 0.00 0.00 4.70
92 93 1.886886 TCAACCAAGTTAACGCTCCC 58.113 50.000 0.00 0.00 0.00 4.30
93 94 0.515564 CAACCAAGTTAACGCTCCCG 59.484 55.000 0.00 0.00 41.14 5.14
103 104 2.490217 CGCTCCCGTTGTCGATCT 59.510 61.111 0.00 0.00 39.71 2.75
104 105 1.725665 CGCTCCCGTTGTCGATCTA 59.274 57.895 0.00 0.00 39.71 1.98
105 106 0.591741 CGCTCCCGTTGTCGATCTAC 60.592 60.000 0.00 0.00 39.71 2.59
106 107 0.454600 GCTCCCGTTGTCGATCTACA 59.545 55.000 0.00 0.00 39.71 2.74
107 108 1.135199 GCTCCCGTTGTCGATCTACAA 60.135 52.381 8.63 8.63 39.71 2.41
108 109 2.798680 CTCCCGTTGTCGATCTACAAG 58.201 52.381 12.70 7.56 39.92 3.16
109 110 1.475280 TCCCGTTGTCGATCTACAAGG 59.525 52.381 20.13 20.13 39.92 3.61
111 112 2.649331 CGTTGTCGATCTACAAGGGT 57.351 50.000 19.59 0.00 39.92 4.34
112 113 3.770263 CGTTGTCGATCTACAAGGGTA 57.230 47.619 19.59 0.00 39.92 3.69
113 114 4.303086 CGTTGTCGATCTACAAGGGTAT 57.697 45.455 19.59 0.00 39.92 2.73
114 115 4.042398 CGTTGTCGATCTACAAGGGTATG 58.958 47.826 19.59 0.74 39.92 2.39
115 116 4.439700 CGTTGTCGATCTACAAGGGTATGT 60.440 45.833 19.59 0.00 39.92 2.29
116 117 5.220912 CGTTGTCGATCTACAAGGGTATGTA 60.221 44.000 19.59 0.00 39.92 2.29
117 118 7.001155 CGTTGTCGATCTACAAGGGTATGTAG 61.001 46.154 19.59 7.91 44.77 2.74
126 127 5.599999 ACAAGGGTATGTAGATCACACTC 57.400 43.478 0.00 0.00 40.86 3.51
127 128 5.273208 ACAAGGGTATGTAGATCACACTCT 58.727 41.667 0.00 0.00 35.57 3.24
128 129 5.361285 ACAAGGGTATGTAGATCACACTCTC 59.639 44.000 0.00 0.00 32.51 3.20
129 130 4.475345 AGGGTATGTAGATCACACTCTCC 58.525 47.826 0.00 0.00 40.86 3.71
130 131 3.574826 GGGTATGTAGATCACACTCTCCC 59.425 52.174 0.00 4.81 40.86 4.30
131 132 3.574826 GGTATGTAGATCACACTCTCCCC 59.425 52.174 0.00 0.00 40.86 4.81
132 133 3.697190 ATGTAGATCACACTCTCCCCT 57.303 47.619 0.00 0.00 40.86 4.79
133 134 3.019799 TGTAGATCACACTCTCCCCTC 57.980 52.381 0.00 0.00 30.04 4.30
134 135 2.583101 TGTAGATCACACTCTCCCCTCT 59.417 50.000 0.00 0.00 30.04 3.69
135 136 2.452600 AGATCACACTCTCCCCTCTC 57.547 55.000 0.00 0.00 0.00 3.20
136 137 1.028905 GATCACACTCTCCCCTCTCG 58.971 60.000 0.00 0.00 0.00 4.04
137 138 0.333312 ATCACACTCTCCCCTCTCGT 59.667 55.000 0.00 0.00 0.00 4.18
138 139 0.112606 TCACACTCTCCCCTCTCGTT 59.887 55.000 0.00 0.00 0.00 3.85
139 140 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
140 141 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
141 142 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
142 143 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
143 144 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
144 145 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
145 146 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
146 147 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
147 148 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
148 149 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
149 150 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
150 151 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
151 152 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
152 153 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
153 154 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
154 155 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
155 156 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
156 157 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
157 158 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
158 159 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
159 160 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
160 161 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
161 162 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
162 163 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
163 164 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
164 165 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
165 166 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
166 167 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
167 168 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
179 180 2.325509 GCGTGTGCGTAGGAATTTTT 57.674 45.000 0.00 0.00 40.81 1.94
202 203 8.631676 TTTTTGAAATTACTACGAAACCCAAC 57.368 30.769 0.00 0.00 0.00 3.77
203 204 6.939132 TTGAAATTACTACGAAACCCAACA 57.061 33.333 0.00 0.00 0.00 3.33
211 212 2.871453 ACGAAACCCAACATTTAGGCT 58.129 42.857 0.00 0.00 0.00 4.58
221 222 3.199880 ACATTTAGGCTCTCCGATTGG 57.800 47.619 0.00 0.00 37.47 3.16
225 226 0.559205 TAGGCTCTCCGATTGGGGTA 59.441 55.000 0.00 0.00 36.91 3.69
254 255 9.824216 AACCCTACTCTTGCTCTATGTATATTA 57.176 33.333 0.00 0.00 0.00 0.98
314 315 9.570468 AGGAACTGTAATGTATCTATCGACTAA 57.430 33.333 0.00 0.00 37.18 2.24
333 334 1.713297 ACTCGGCCCCGACTTATATT 58.287 50.000 5.12 0.00 44.01 1.28
341 342 4.439968 GCCCCGACTTATATTACATAGCC 58.560 47.826 0.00 0.00 0.00 3.93
346 347 5.337009 CCGACTTATATTACATAGCCGGGTT 60.337 44.000 13.43 0.00 0.00 4.11
347 348 6.161381 CGACTTATATTACATAGCCGGGTTT 58.839 40.000 13.43 0.00 0.00 3.27
368 369 7.310237 GGGTTTCTAGGATTACACAACTAGTCA 60.310 40.741 0.00 0.00 35.56 3.41
369 370 7.544915 GGTTTCTAGGATTACACAACTAGTCAC 59.455 40.741 0.00 0.00 35.56 3.67
370 371 8.305317 GTTTCTAGGATTACACAACTAGTCACT 58.695 37.037 0.00 0.00 35.56 3.41
371 372 9.524496 TTTCTAGGATTACACAACTAGTCACTA 57.476 33.333 0.00 0.00 35.56 2.74
372 373 9.696572 TTCTAGGATTACACAACTAGTCACTAT 57.303 33.333 0.00 0.00 35.56 2.12
493 495 2.353610 GGCGAAACCGACCTAGGGA 61.354 63.158 14.81 0.00 35.02 4.20
518 520 3.400054 GGCCGGCCTACTTGGTCT 61.400 66.667 38.76 0.00 38.58 3.85
520 522 2.584608 CCGGCCTACTTGGTCTGG 59.415 66.667 0.00 0.00 38.58 3.86
815 827 4.431416 TCAAGGAAAAGGAACACAGCTA 57.569 40.909 0.00 0.00 0.00 3.32
872 884 3.013921 AGAAACAAAACACGGAGCAAGA 58.986 40.909 0.00 0.00 0.00 3.02
873 885 3.442273 AGAAACAAAACACGGAGCAAGAA 59.558 39.130 0.00 0.00 0.00 2.52
874 886 3.420839 AACAAAACACGGAGCAAGAAG 57.579 42.857 0.00 0.00 0.00 2.85
891 903 5.750547 GCAAGAAGAACCTTTCCAAGAAAAG 59.249 40.000 0.00 0.00 36.26 2.27
1205 1247 2.809601 CTGCGTCCGTGTAGGTGC 60.810 66.667 0.00 0.00 41.99 5.01
1227 1269 3.181506 CCTCGCAACCTCTTTATTTCAGC 60.182 47.826 0.00 0.00 0.00 4.26
1304 1346 9.583765 GGATATATTTTAGGATCTTGTACGGAC 57.416 37.037 0.00 0.00 0.00 4.79
1353 1396 4.638421 TGTGGAGTTTGCCTATATTTTCCG 59.362 41.667 0.00 0.00 0.00 4.30
1416 1459 3.380393 TCCGAGGTTATCATTCTGGGAA 58.620 45.455 0.00 0.00 33.52 3.97
1431 1474 3.772025 TCTGGGAAGATCTCTTGAGTTCC 59.228 47.826 0.00 0.00 37.99 3.62
1461 1504 6.711277 TCTTATTTGGTATGAAGACTGCAGT 58.289 36.000 21.88 21.88 0.00 4.40
1557 1600 6.620877 AAATGTATCACTTACTCACCTCCA 57.379 37.500 0.00 0.00 0.00 3.86
1640 1683 5.241285 TCATGTAATTTGTTTGCTGCAGAGA 59.759 36.000 20.43 0.77 0.00 3.10
1652 1695 2.479656 GCTGCAGAGACTCAAAGAGTTG 59.520 50.000 20.43 0.00 43.53 3.16
1815 1858 3.485743 GGTTTCACGATCTTTGTTTGCAC 59.514 43.478 0.00 0.00 0.00 4.57
1914 1957 2.236146 CTGGTCAGGGTACAGTTGCATA 59.764 50.000 0.00 0.00 0.00 3.14
1924 1967 5.118990 GGTACAGTTGCATATCTCACATGT 58.881 41.667 0.00 0.00 0.00 3.21
2065 2108 6.700960 CAGCATTTGTGGTTAGTTTTGAATGA 59.299 34.615 0.00 0.00 0.00 2.57
2087 2132 6.341316 TGACTATTGCTCAATACCTGAACTC 58.659 40.000 0.00 0.00 32.17 3.01
2141 2186 7.054751 ACCCTACTGTTTTATGCTTAGGAATC 58.945 38.462 0.00 0.00 0.00 2.52
2278 2323 4.838986 AGAGGTAGCCTGACAGAACTTTAA 59.161 41.667 3.32 0.00 31.76 1.52
2281 2326 4.691216 GGTAGCCTGACAGAACTTTAAGTG 59.309 45.833 3.32 0.00 0.00 3.16
2283 2328 3.136626 AGCCTGACAGAACTTTAAGTGGT 59.863 43.478 3.32 0.00 0.00 4.16
2284 2329 3.498777 GCCTGACAGAACTTTAAGTGGTC 59.501 47.826 3.32 14.01 0.00 4.02
2285 2330 3.741344 CCTGACAGAACTTTAAGTGGTCG 59.259 47.826 3.32 11.45 31.39 4.79
2286 2331 3.724374 TGACAGAACTTTAAGTGGTCGG 58.276 45.455 15.13 7.50 31.39 4.79
2287 2332 3.385433 TGACAGAACTTTAAGTGGTCGGA 59.615 43.478 15.13 2.55 31.39 4.55
2288 2333 3.725490 ACAGAACTTTAAGTGGTCGGAC 58.275 45.455 0.00 0.00 0.00 4.79
2289 2334 3.064931 CAGAACTTTAAGTGGTCGGACC 58.935 50.000 20.36 20.36 39.22 4.46
2290 2335 2.038164 AGAACTTTAAGTGGTCGGACCC 59.962 50.000 23.81 14.91 37.50 4.46
2293 2338 2.038164 ACTTTAAGTGGTCGGACCCTTC 59.962 50.000 24.76 16.09 37.50 3.46
2294 2339 0.978907 TTAAGTGGTCGGACCCTTCC 59.021 55.000 24.76 12.46 37.50 3.46
2295 2340 0.906282 TAAGTGGTCGGACCCTTCCC 60.906 60.000 24.76 10.49 38.99 3.97
2296 2341 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2297 2342 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
2298 2343 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
2299 2344 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
2300 2345 2.284405 TCGGACCCTTCCCCAGAC 60.284 66.667 0.00 0.00 38.99 3.51
2301 2346 3.400054 CGGACCCTTCCCCAGACC 61.400 72.222 0.00 0.00 38.99 3.85
2302 2347 3.015753 GGACCCTTCCCCAGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2303 2348 2.125225 GACCCTTCCCCAGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2304 2349 2.204151 ACCCTTCCCCAGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2305 2350 3.732849 CCCTTCCCCAGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2306 2351 4.101448 CCTTCCCCAGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2307 2352 4.785453 CTTCCCCAGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2328 2373 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
2329 2374 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
2330 2375 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
2331 2376 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
2332 2377 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
2333 2378 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
2334 2379 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
2335 2380 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
2336 2381 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
2469 2514 2.120274 CCCATTGGTGGCTTGGGT 59.880 61.111 1.20 0.00 44.30 4.51
2535 2596 7.719633 TGCCCAAGATACCTTAGACATAAATTC 59.280 37.037 0.00 0.00 0.00 2.17
2536 2597 7.175119 GCCCAAGATACCTTAGACATAAATTCC 59.825 40.741 0.00 0.00 0.00 3.01
2617 2681 4.101119 GGTGGGAGGAGAAATCGATAAAGA 59.899 45.833 0.00 0.00 0.00 2.52
2618 2682 5.396436 GGTGGGAGGAGAAATCGATAAAGAA 60.396 44.000 0.00 0.00 0.00 2.52
2619 2683 5.755861 GTGGGAGGAGAAATCGATAAAGAAG 59.244 44.000 0.00 0.00 0.00 2.85
2722 2786 3.366781 GGCCTTGAAGATCTTCTTGCAAC 60.367 47.826 30.45 17.13 36.73 4.17
2724 2788 3.120060 CCTTGAAGATCTTCTTGCAACGG 60.120 47.826 30.45 16.19 36.73 4.44
2740 2804 0.035534 ACGGTGTTAGCATCATGGCA 60.036 50.000 0.00 0.00 35.83 4.92
2842 2906 1.045407 TGACAACGTCAAGGCCTAGT 58.955 50.000 5.16 0.71 39.78 2.57
2934 3000 0.614812 GCCCCCAGCATGTTGATTTT 59.385 50.000 11.60 0.00 42.97 1.82
2960 3026 1.075374 TGGCAGCCAAACATAAGGAGT 59.925 47.619 13.33 0.00 0.00 3.85
2997 3063 3.846430 CCGCCCCCGAGTAGAACC 61.846 72.222 0.00 0.00 36.29 3.62
2998 3064 4.203076 CGCCCCCGAGTAGAACCG 62.203 72.222 0.00 0.00 36.29 4.44
3039 3105 0.107165 GGGGTCTACCTGATGGCAAC 60.107 60.000 0.00 0.00 40.03 4.17
3093 3159 4.467084 GCCAAGGCCCGATCGACA 62.467 66.667 18.66 0.00 34.56 4.35
3096 3162 2.100631 CAAGGCCCGATCGACACAC 61.101 63.158 18.66 1.87 0.00 3.82
3110 3176 2.167693 CGACACACTAAATCCAGGCCTA 59.832 50.000 3.98 0.00 0.00 3.93
3115 3181 5.369699 ACACACTAAATCCAGGCCTACATAT 59.630 40.000 3.98 0.00 0.00 1.78
3121 3187 3.801307 TCCAGGCCTACATATCTACGA 57.199 47.619 3.98 0.00 0.00 3.43
3136 3202 0.578683 TACGACGATCTACGCTTCGG 59.421 55.000 0.00 0.00 46.94 4.30
3137 3203 2.004489 CGACGATCTACGCTTCGGC 61.004 63.158 0.00 0.00 46.94 5.54
3138 3204 1.657794 GACGATCTACGCTTCGGCC 60.658 63.158 0.00 0.00 46.94 6.13
3139 3205 2.354773 CGATCTACGCTTCGGCCC 60.355 66.667 0.00 0.00 37.76 5.80
3140 3206 2.846652 CGATCTACGCTTCGGCCCT 61.847 63.158 0.00 0.00 37.76 5.19
3141 3207 1.300233 GATCTACGCTTCGGCCCTG 60.300 63.158 0.00 0.00 37.76 4.45
3142 3208 2.017559 GATCTACGCTTCGGCCCTGT 62.018 60.000 0.00 0.00 37.76 4.00
3143 3209 1.614241 ATCTACGCTTCGGCCCTGTT 61.614 55.000 0.00 0.00 37.76 3.16
3144 3210 1.375523 CTACGCTTCGGCCCTGTTT 60.376 57.895 0.00 0.00 37.76 2.83
3145 3211 1.635663 CTACGCTTCGGCCCTGTTTG 61.636 60.000 0.00 0.00 37.76 2.93
3146 3212 3.737172 CGCTTCGGCCCTGTTTGG 61.737 66.667 0.00 0.00 37.76 3.28
3147 3213 2.282180 GCTTCGGCCCTGTTTGGA 60.282 61.111 0.00 0.00 38.35 3.53
3148 3214 1.678970 GCTTCGGCCCTGTTTGGAT 60.679 57.895 0.00 0.00 38.35 3.41
3149 3215 1.937546 GCTTCGGCCCTGTTTGGATG 61.938 60.000 0.00 0.00 38.35 3.51
3150 3216 1.937546 CTTCGGCCCTGTTTGGATGC 61.938 60.000 0.00 0.00 38.35 3.91
3151 3217 2.361610 CGGCCCTGTTTGGATGCT 60.362 61.111 0.00 0.00 38.35 3.79
3152 3218 2.703798 CGGCCCTGTTTGGATGCTG 61.704 63.158 0.00 0.00 38.35 4.41
3153 3219 1.607467 GGCCCTGTTTGGATGCTGT 60.607 57.895 0.00 0.00 38.35 4.40
3154 3220 0.323360 GGCCCTGTTTGGATGCTGTA 60.323 55.000 0.00 0.00 38.35 2.74
3155 3221 1.098050 GCCCTGTTTGGATGCTGTAG 58.902 55.000 0.00 0.00 38.35 2.74
3156 3222 1.614317 GCCCTGTTTGGATGCTGTAGT 60.614 52.381 0.00 0.00 38.35 2.73
3157 3223 2.795329 CCCTGTTTGGATGCTGTAGTT 58.205 47.619 0.00 0.00 38.35 2.24
3158 3224 3.872240 GCCCTGTTTGGATGCTGTAGTTA 60.872 47.826 0.00 0.00 38.35 2.24
3159 3225 3.941483 CCCTGTTTGGATGCTGTAGTTAG 59.059 47.826 0.00 0.00 38.35 2.34
3160 3226 4.323485 CCCTGTTTGGATGCTGTAGTTAGA 60.323 45.833 0.00 0.00 38.35 2.10
3161 3227 4.872691 CCTGTTTGGATGCTGTAGTTAGAG 59.127 45.833 0.00 0.00 38.35 2.43
3162 3228 5.482908 CTGTTTGGATGCTGTAGTTAGAGT 58.517 41.667 0.00 0.00 0.00 3.24
3163 3229 5.865085 TGTTTGGATGCTGTAGTTAGAGTT 58.135 37.500 0.00 0.00 0.00 3.01
3164 3230 6.999950 TGTTTGGATGCTGTAGTTAGAGTTA 58.000 36.000 0.00 0.00 0.00 2.24
3165 3231 7.097192 TGTTTGGATGCTGTAGTTAGAGTTAG 58.903 38.462 0.00 0.00 0.00 2.34
3166 3232 7.039293 TGTTTGGATGCTGTAGTTAGAGTTAGA 60.039 37.037 0.00 0.00 0.00 2.10
3167 3233 6.701145 TGGATGCTGTAGTTAGAGTTAGAG 57.299 41.667 0.00 0.00 0.00 2.43
3168 3234 6.188407 TGGATGCTGTAGTTAGAGTTAGAGT 58.812 40.000 0.00 0.00 0.00 3.24
3169 3235 6.663953 TGGATGCTGTAGTTAGAGTTAGAGTT 59.336 38.462 0.00 0.00 0.00 3.01
3170 3236 6.975772 GGATGCTGTAGTTAGAGTTAGAGTTG 59.024 42.308 0.00 0.00 0.00 3.16
3171 3237 6.268825 TGCTGTAGTTAGAGTTAGAGTTGG 57.731 41.667 0.00 0.00 0.00 3.77
3172 3238 5.773680 TGCTGTAGTTAGAGTTAGAGTTGGT 59.226 40.000 0.00 0.00 0.00 3.67
3173 3239 6.267014 TGCTGTAGTTAGAGTTAGAGTTGGTT 59.733 38.462 0.00 0.00 0.00 3.67
3174 3240 7.449395 TGCTGTAGTTAGAGTTAGAGTTGGTTA 59.551 37.037 0.00 0.00 0.00 2.85
3175 3241 7.969508 GCTGTAGTTAGAGTTAGAGTTGGTTAG 59.030 40.741 0.00 0.00 0.00 2.34
3176 3242 8.930846 TGTAGTTAGAGTTAGAGTTGGTTAGT 57.069 34.615 0.00 0.00 0.00 2.24
3177 3243 9.359653 TGTAGTTAGAGTTAGAGTTGGTTAGTT 57.640 33.333 0.00 0.00 0.00 2.24
3178 3244 9.838975 GTAGTTAGAGTTAGAGTTGGTTAGTTC 57.161 37.037 0.00 0.00 0.00 3.01
3179 3245 8.474710 AGTTAGAGTTAGAGTTGGTTAGTTCA 57.525 34.615 0.00 0.00 0.00 3.18
3180 3246 8.578151 AGTTAGAGTTAGAGTTGGTTAGTTCAG 58.422 37.037 0.00 0.00 0.00 3.02
3181 3247 6.347859 AGAGTTAGAGTTGGTTAGTTCAGG 57.652 41.667 0.00 0.00 0.00 3.86
3182 3248 4.895961 AGTTAGAGTTGGTTAGTTCAGGC 58.104 43.478 0.00 0.00 0.00 4.85
3183 3249 4.593634 AGTTAGAGTTGGTTAGTTCAGGCT 59.406 41.667 0.00 0.00 0.00 4.58
3184 3250 5.778750 AGTTAGAGTTGGTTAGTTCAGGCTA 59.221 40.000 0.00 0.00 0.00 3.93
3185 3251 6.269307 AGTTAGAGTTGGTTAGTTCAGGCTAA 59.731 38.462 0.00 0.00 0.00 3.09
3186 3252 5.562298 AGAGTTGGTTAGTTCAGGCTAAA 57.438 39.130 0.00 0.00 33.34 1.85
3187 3253 5.306394 AGAGTTGGTTAGTTCAGGCTAAAC 58.694 41.667 0.00 0.00 38.70 2.01
3188 3254 5.071923 AGAGTTGGTTAGTTCAGGCTAAACT 59.928 40.000 8.37 8.37 38.92 2.66
3189 3255 6.269307 AGAGTTGGTTAGTTCAGGCTAAACTA 59.731 38.462 6.15 6.15 38.92 2.24
3190 3256 6.834107 AGTTGGTTAGTTCAGGCTAAACTAA 58.166 36.000 17.22 17.22 43.43 2.24
3197 3263 6.930068 AGTTCAGGCTAAACTAACCTTAGA 57.070 37.500 0.00 0.00 35.25 2.10
3198 3264 6.937392 AGTTCAGGCTAAACTAACCTTAGAG 58.063 40.000 0.00 0.00 35.25 2.43
3199 3265 5.934402 TCAGGCTAAACTAACCTTAGAGG 57.066 43.478 0.00 0.00 42.49 3.69
3200 3266 5.586877 TCAGGCTAAACTAACCTTAGAGGA 58.413 41.667 0.07 0.00 37.67 3.71
3201 3267 6.203072 TCAGGCTAAACTAACCTTAGAGGAT 58.797 40.000 0.07 0.00 37.67 3.24
3202 3268 6.324254 TCAGGCTAAACTAACCTTAGAGGATC 59.676 42.308 0.07 0.00 37.67 3.36
3203 3269 5.603395 AGGCTAAACTAACCTTAGAGGATCC 59.397 44.000 2.48 2.48 37.67 3.36
3204 3270 5.365895 GGCTAAACTAACCTTAGAGGATCCA 59.634 44.000 15.82 0.00 37.67 3.41
3205 3271 6.126854 GGCTAAACTAACCTTAGAGGATCCAA 60.127 42.308 15.82 0.00 37.67 3.53
3206 3272 7.336396 GCTAAACTAACCTTAGAGGATCCAAA 58.664 38.462 15.82 4.28 37.67 3.28
3207 3273 7.280428 GCTAAACTAACCTTAGAGGATCCAAAC 59.720 40.741 15.82 5.00 37.67 2.93
3208 3274 6.697641 AACTAACCTTAGAGGATCCAAACA 57.302 37.500 15.82 0.00 37.67 2.83
3209 3275 6.301169 ACTAACCTTAGAGGATCCAAACAG 57.699 41.667 15.82 4.31 37.67 3.16
3210 3276 4.576330 AACCTTAGAGGATCCAAACAGG 57.424 45.455 15.82 15.48 37.67 4.00
3211 3277 3.532102 ACCTTAGAGGATCCAAACAGGT 58.468 45.455 15.82 16.13 37.67 4.00
3212 3278 3.264450 ACCTTAGAGGATCCAAACAGGTG 59.736 47.826 19.71 3.54 37.67 4.00
3213 3279 3.519510 CCTTAGAGGATCCAAACAGGTGA 59.480 47.826 15.82 0.00 37.67 4.02
3214 3280 4.383552 CCTTAGAGGATCCAAACAGGTGAG 60.384 50.000 15.82 0.00 37.67 3.51
3215 3281 2.625639 AGAGGATCCAAACAGGTGAGT 58.374 47.619 15.82 0.00 39.02 3.41
3216 3282 2.982488 AGAGGATCCAAACAGGTGAGTT 59.018 45.455 15.82 0.00 39.02 3.01
3217 3283 4.168101 AGAGGATCCAAACAGGTGAGTTA 58.832 43.478 15.82 0.00 39.02 2.24
3218 3284 4.223923 AGAGGATCCAAACAGGTGAGTTAG 59.776 45.833 15.82 0.00 39.02 2.34
3219 3285 4.168101 AGGATCCAAACAGGTGAGTTAGA 58.832 43.478 15.82 0.00 39.02 2.10
3220 3286 4.785376 AGGATCCAAACAGGTGAGTTAGAT 59.215 41.667 15.82 0.00 39.02 1.98
3221 3287 5.964477 AGGATCCAAACAGGTGAGTTAGATA 59.036 40.000 15.82 0.00 39.02 1.98
3222 3288 6.098982 AGGATCCAAACAGGTGAGTTAGATAG 59.901 42.308 15.82 0.00 39.02 2.08
3223 3289 5.086104 TCCAAACAGGTGAGTTAGATAGC 57.914 43.478 0.00 0.00 39.02 2.97
3224 3290 4.530553 TCCAAACAGGTGAGTTAGATAGCA 59.469 41.667 0.00 0.00 39.02 3.49
3225 3291 4.872691 CCAAACAGGTGAGTTAGATAGCAG 59.127 45.833 0.00 0.00 0.00 4.24
3226 3292 5.482908 CAAACAGGTGAGTTAGATAGCAGT 58.517 41.667 0.00 0.00 0.00 4.40
3227 3293 5.746990 AACAGGTGAGTTAGATAGCAGTT 57.253 39.130 0.00 0.00 0.00 3.16
3228 3294 6.852420 AACAGGTGAGTTAGATAGCAGTTA 57.148 37.500 0.00 0.00 0.00 2.24
3229 3295 6.458232 ACAGGTGAGTTAGATAGCAGTTAG 57.542 41.667 0.00 0.00 0.00 2.34
3230 3296 5.952947 ACAGGTGAGTTAGATAGCAGTTAGT 59.047 40.000 0.00 0.00 0.00 2.24
3231 3297 6.437793 ACAGGTGAGTTAGATAGCAGTTAGTT 59.562 38.462 0.00 0.00 0.00 2.24
3232 3298 6.754209 CAGGTGAGTTAGATAGCAGTTAGTTG 59.246 42.308 0.00 0.00 0.00 3.16
3233 3299 5.520649 GGTGAGTTAGATAGCAGTTAGTTGC 59.479 44.000 0.00 0.00 44.41 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.956633 TCCGAGTTCTAGCACACGTT 59.043 50.000 10.84 0.00 0.00 3.99
1 2 0.522180 CTCCGAGTTCTAGCACACGT 59.478 55.000 10.84 0.00 0.00 4.49
2 3 0.179161 CCTCCGAGTTCTAGCACACG 60.179 60.000 5.46 5.46 0.00 4.49
3 4 0.889306 ACCTCCGAGTTCTAGCACAC 59.111 55.000 0.00 0.00 0.00 3.82
4 5 0.888619 CACCTCCGAGTTCTAGCACA 59.111 55.000 0.00 0.00 0.00 4.57
5 6 0.458716 GCACCTCCGAGTTCTAGCAC 60.459 60.000 0.00 0.00 0.00 4.40
6 7 1.605058 GGCACCTCCGAGTTCTAGCA 61.605 60.000 0.00 0.00 0.00 3.49
7 8 1.142097 GGCACCTCCGAGTTCTAGC 59.858 63.158 0.00 0.00 0.00 3.42
17 18 1.447314 CCGAAACTACGGCACCTCC 60.447 63.158 0.00 0.00 46.20 4.30
18 19 4.180496 CCGAAACTACGGCACCTC 57.820 61.111 0.00 0.00 46.20 3.85
25 26 2.333926 TGATCAAGCACCGAAACTACG 58.666 47.619 0.00 0.00 0.00 3.51
26 27 3.326747 ACTGATCAAGCACCGAAACTAC 58.673 45.455 0.00 0.00 0.00 2.73
27 28 3.585862 GACTGATCAAGCACCGAAACTA 58.414 45.455 0.00 0.00 0.00 2.24
28 29 2.417719 GACTGATCAAGCACCGAAACT 58.582 47.619 0.00 0.00 0.00 2.66
29 30 1.126846 CGACTGATCAAGCACCGAAAC 59.873 52.381 0.00 0.00 0.00 2.78
30 31 1.428448 CGACTGATCAAGCACCGAAA 58.572 50.000 0.00 0.00 0.00 3.46
31 32 0.389817 CCGACTGATCAAGCACCGAA 60.390 55.000 0.00 0.00 0.00 4.30
32 33 1.215382 CCGACTGATCAAGCACCGA 59.785 57.895 0.00 0.00 0.00 4.69
33 34 1.811266 CCCGACTGATCAAGCACCG 60.811 63.158 0.00 0.00 0.00 4.94
34 35 2.109126 GCCCGACTGATCAAGCACC 61.109 63.158 0.00 0.00 0.00 5.01
35 36 2.109126 GGCCCGACTGATCAAGCAC 61.109 63.158 0.00 0.00 0.00 4.40
36 37 2.268920 GGCCCGACTGATCAAGCA 59.731 61.111 0.00 0.00 0.00 3.91
37 38 2.892425 CGGCCCGACTGATCAAGC 60.892 66.667 0.00 0.00 0.00 4.01
38 39 1.811266 CACGGCCCGACTGATCAAG 60.811 63.158 11.71 0.00 0.00 3.02
39 40 1.822114 TTCACGGCCCGACTGATCAA 61.822 55.000 11.71 0.00 0.00 2.57
40 41 2.225791 CTTCACGGCCCGACTGATCA 62.226 60.000 11.71 0.00 0.00 2.92
41 42 1.519455 CTTCACGGCCCGACTGATC 60.519 63.158 11.71 0.00 0.00 2.92
42 43 1.982395 TCTTCACGGCCCGACTGAT 60.982 57.895 11.71 0.00 0.00 2.90
43 44 2.599281 TCTTCACGGCCCGACTGA 60.599 61.111 11.71 0.00 0.00 3.41
44 45 2.432628 GTCTTCACGGCCCGACTG 60.433 66.667 11.71 0.00 0.00 3.51
45 46 4.052229 CGTCTTCACGGCCCGACT 62.052 66.667 11.71 0.00 42.73 4.18
54 55 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
55 56 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
56 57 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
57 58 3.503363 TGGTTGATGTAGTCGTACGTCTT 59.497 43.478 19.61 2.66 43.23 3.01
58 59 3.076621 TGGTTGATGTAGTCGTACGTCT 58.923 45.455 18.54 18.54 43.23 4.18
59 60 3.476295 TGGTTGATGTAGTCGTACGTC 57.524 47.619 16.05 10.06 43.16 4.34
60 61 3.254166 ACTTGGTTGATGTAGTCGTACGT 59.746 43.478 16.05 0.00 30.95 3.57
61 62 3.829948 ACTTGGTTGATGTAGTCGTACG 58.170 45.455 9.53 9.53 30.95 3.67
62 63 6.183359 CGTTAACTTGGTTGATGTAGTCGTAC 60.183 42.308 3.71 0.00 0.00 3.67
63 64 5.858049 CGTTAACTTGGTTGATGTAGTCGTA 59.142 40.000 3.71 0.00 0.00 3.43
64 65 4.682860 CGTTAACTTGGTTGATGTAGTCGT 59.317 41.667 3.71 0.00 0.00 4.34
65 66 4.433805 GCGTTAACTTGGTTGATGTAGTCG 60.434 45.833 3.71 0.00 0.00 4.18
66 67 4.689345 AGCGTTAACTTGGTTGATGTAGTC 59.311 41.667 3.71 0.00 0.00 2.59
67 68 4.638304 AGCGTTAACTTGGTTGATGTAGT 58.362 39.130 3.71 0.00 0.00 2.73
68 69 4.092968 GGAGCGTTAACTTGGTTGATGTAG 59.907 45.833 3.71 0.00 0.00 2.74
69 70 3.998341 GGAGCGTTAACTTGGTTGATGTA 59.002 43.478 3.71 0.00 0.00 2.29
70 71 2.812011 GGAGCGTTAACTTGGTTGATGT 59.188 45.455 3.71 0.00 0.00 3.06
71 72 2.161609 GGGAGCGTTAACTTGGTTGATG 59.838 50.000 3.71 0.00 0.00 3.07
72 73 2.433436 GGGAGCGTTAACTTGGTTGAT 58.567 47.619 3.71 0.00 0.00 2.57
73 74 1.874739 CGGGAGCGTTAACTTGGTTGA 60.875 52.381 3.71 0.00 0.00 3.18
74 75 0.515564 CGGGAGCGTTAACTTGGTTG 59.484 55.000 3.71 0.00 0.00 3.77
75 76 0.107268 ACGGGAGCGTTAACTTGGTT 59.893 50.000 3.71 0.00 0.00 3.67
76 77 0.107268 AACGGGAGCGTTAACTTGGT 59.893 50.000 3.71 0.00 0.00 3.67
77 78 0.515564 CAACGGGAGCGTTAACTTGG 59.484 55.000 3.71 0.00 0.00 3.61
78 79 1.193874 GACAACGGGAGCGTTAACTTG 59.806 52.381 3.71 2.28 0.00 3.16
79 80 1.505425 GACAACGGGAGCGTTAACTT 58.495 50.000 3.71 0.00 0.00 2.66
80 81 0.665369 CGACAACGGGAGCGTTAACT 60.665 55.000 3.71 0.00 35.72 2.24
81 82 0.664166 TCGACAACGGGAGCGTTAAC 60.664 55.000 0.00 0.00 40.21 2.01
82 83 0.244450 ATCGACAACGGGAGCGTTAA 59.756 50.000 0.00 0.00 40.21 2.01
83 84 0.179156 GATCGACAACGGGAGCGTTA 60.179 55.000 0.00 0.00 40.21 3.18
84 85 1.445582 GATCGACAACGGGAGCGTT 60.446 57.895 0.00 0.00 40.21 4.84
85 86 1.028330 TAGATCGACAACGGGAGCGT 61.028 55.000 0.00 0.00 40.21 5.07
86 87 0.591741 GTAGATCGACAACGGGAGCG 60.592 60.000 0.53 0.00 40.21 5.03
87 88 0.454600 TGTAGATCGACAACGGGAGC 59.545 55.000 6.15 0.00 40.21 4.70
88 89 2.479730 CCTTGTAGATCGACAACGGGAG 60.480 54.545 16.32 7.34 40.21 4.30
89 90 1.475280 CCTTGTAGATCGACAACGGGA 59.525 52.381 16.32 0.00 40.21 5.14
90 91 1.470979 CCCTTGTAGATCGACAACGGG 60.471 57.143 26.17 26.17 39.37 5.28
91 92 1.203994 ACCCTTGTAGATCGACAACGG 59.796 52.381 24.67 24.67 39.81 4.44
92 93 2.649331 ACCCTTGTAGATCGACAACG 57.351 50.000 16.32 12.60 34.40 4.10
93 94 5.007385 ACATACCCTTGTAGATCGACAAC 57.993 43.478 16.32 1.00 34.40 3.32
102 103 6.547880 AGAGTGTGATCTACATACCCTTGTAG 59.452 42.308 5.47 5.47 46.85 2.74
103 104 6.432581 AGAGTGTGATCTACATACCCTTGTA 58.567 40.000 0.00 0.00 42.24 2.41
104 105 5.273208 AGAGTGTGATCTACATACCCTTGT 58.727 41.667 0.00 0.00 42.24 3.16
105 106 5.221342 GGAGAGTGTGATCTACATACCCTTG 60.221 48.000 0.00 0.00 42.24 3.61
106 107 4.896482 GGAGAGTGTGATCTACATACCCTT 59.104 45.833 0.00 0.00 42.24 3.95
107 108 4.475345 GGAGAGTGTGATCTACATACCCT 58.525 47.826 0.00 0.00 42.24 4.34
108 109 3.574826 GGGAGAGTGTGATCTACATACCC 59.425 52.174 0.00 0.00 42.24 3.69
109 110 3.574826 GGGGAGAGTGTGATCTACATACC 59.425 52.174 0.00 0.00 42.24 2.73
110 111 4.475345 AGGGGAGAGTGTGATCTACATAC 58.525 47.826 0.00 0.00 42.24 2.39
111 112 4.417183 AGAGGGGAGAGTGTGATCTACATA 59.583 45.833 0.00 0.00 42.24 2.29
112 113 3.206412 AGAGGGGAGAGTGTGATCTACAT 59.794 47.826 0.00 0.00 42.24 2.29
113 114 2.583101 AGAGGGGAGAGTGTGATCTACA 59.417 50.000 0.00 0.00 36.82 2.74
114 115 3.219281 GAGAGGGGAGAGTGTGATCTAC 58.781 54.545 0.00 0.00 0.00 2.59
115 116 2.158740 CGAGAGGGGAGAGTGTGATCTA 60.159 54.545 0.00 0.00 0.00 1.98
116 117 1.409521 CGAGAGGGGAGAGTGTGATCT 60.410 57.143 0.00 0.00 0.00 2.75
117 118 1.028905 CGAGAGGGGAGAGTGTGATC 58.971 60.000 0.00 0.00 0.00 2.92
118 119 0.333312 ACGAGAGGGGAGAGTGTGAT 59.667 55.000 0.00 0.00 0.00 3.06
119 120 0.112606 AACGAGAGGGGAGAGTGTGA 59.887 55.000 0.00 0.00 0.00 3.58
120 121 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
121 122 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
122 123 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
123 124 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
124 125 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
125 126 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
126 127 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
127 128 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
128 129 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
129 130 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
130 131 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
131 132 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
132 133 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
133 134 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
134 135 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
135 136 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
136 137 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
137 138 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
138 139 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
139 140 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
140 141 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
141 142 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
142 143 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
143 144 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
144 145 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
145 146 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
146 147 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
147 148 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
148 149 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
149 150 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
150 151 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
151 152 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
152 153 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
153 154 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
154 155 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
155 156 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
156 157 0.037697 ATTCCTACGCACACGCAAGA 60.038 50.000 0.00 0.00 45.53 3.02
157 158 0.796312 AATTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
158 159 1.231221 AAATTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
159 160 1.231221 AAAATTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
160 161 2.325509 AAAAATTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
177 178 8.248945 TGTTGGGTTTCGTAGTAATTTCAAAAA 58.751 29.630 0.00 0.00 0.00 1.94
178 179 7.769220 TGTTGGGTTTCGTAGTAATTTCAAAA 58.231 30.769 0.00 0.00 0.00 2.44
179 180 7.330900 TGTTGGGTTTCGTAGTAATTTCAAA 57.669 32.000 0.00 0.00 0.00 2.69
180 181 6.939132 TGTTGGGTTTCGTAGTAATTTCAA 57.061 33.333 0.00 0.00 0.00 2.69
181 182 7.513371 AATGTTGGGTTTCGTAGTAATTTCA 57.487 32.000 0.00 0.00 0.00 2.69
182 183 9.550811 CTAAATGTTGGGTTTCGTAGTAATTTC 57.449 33.333 0.00 0.00 0.00 2.17
183 184 8.517056 CCTAAATGTTGGGTTTCGTAGTAATTT 58.483 33.333 0.00 0.00 0.00 1.82
184 185 7.362315 GCCTAAATGTTGGGTTTCGTAGTAATT 60.362 37.037 0.00 0.00 33.15 1.40
185 186 6.094464 GCCTAAATGTTGGGTTTCGTAGTAAT 59.906 38.462 0.00 0.00 33.15 1.89
186 187 5.412286 GCCTAAATGTTGGGTTTCGTAGTAA 59.588 40.000 0.00 0.00 33.15 2.24
187 188 4.937015 GCCTAAATGTTGGGTTTCGTAGTA 59.063 41.667 0.00 0.00 33.15 1.82
188 189 3.754850 GCCTAAATGTTGGGTTTCGTAGT 59.245 43.478 0.00 0.00 33.15 2.73
189 190 4.007659 AGCCTAAATGTTGGGTTTCGTAG 58.992 43.478 0.00 0.00 33.15 3.51
190 191 4.004982 GAGCCTAAATGTTGGGTTTCGTA 58.995 43.478 0.00 0.00 33.83 3.43
191 192 2.817844 GAGCCTAAATGTTGGGTTTCGT 59.182 45.455 0.00 0.00 33.83 3.85
192 193 3.081804 AGAGCCTAAATGTTGGGTTTCG 58.918 45.455 0.00 0.00 33.83 3.46
193 194 3.444034 GGAGAGCCTAAATGTTGGGTTTC 59.556 47.826 0.00 0.00 35.19 2.78
194 195 3.431415 GGAGAGCCTAAATGTTGGGTTT 58.569 45.455 0.00 0.00 33.83 3.27
195 196 2.618045 CGGAGAGCCTAAATGTTGGGTT 60.618 50.000 0.00 0.00 33.83 4.11
196 197 1.065418 CGGAGAGCCTAAATGTTGGGT 60.065 52.381 0.00 0.00 36.70 4.51
197 198 1.209504 TCGGAGAGCCTAAATGTTGGG 59.790 52.381 0.00 0.00 0.00 4.12
198 199 2.691409 TCGGAGAGCCTAAATGTTGG 57.309 50.000 0.00 0.00 0.00 3.77
199 200 3.313526 CCAATCGGAGAGCCTAAATGTTG 59.686 47.826 0.00 0.00 43.63 3.33
200 201 3.545703 CCAATCGGAGAGCCTAAATGTT 58.454 45.455 0.00 0.00 43.63 2.71
201 202 2.158755 CCCAATCGGAGAGCCTAAATGT 60.159 50.000 0.00 0.00 43.63 2.71
202 203 2.498167 CCCAATCGGAGAGCCTAAATG 58.502 52.381 0.00 0.00 43.63 2.32
203 204 1.421646 CCCCAATCGGAGAGCCTAAAT 59.578 52.381 0.00 0.00 43.63 1.40
211 212 2.291089 GGGTTTTTACCCCAATCGGAGA 60.291 50.000 1.75 0.00 44.18 3.71
225 226 6.128138 ACATAGAGCAAGAGTAGGGTTTTT 57.872 37.500 0.00 0.00 0.00 1.94
333 334 3.317455 TCCTAGAAACCCGGCTATGTA 57.683 47.619 0.00 0.00 0.00 2.29
341 342 4.828829 AGTTGTGTAATCCTAGAAACCCG 58.171 43.478 0.00 0.00 0.00 5.28
346 347 9.696572 ATAGTGACTAGTTGTGTAATCCTAGAA 57.303 33.333 0.00 0.00 32.93 2.10
347 348 9.121658 CATAGTGACTAGTTGTGTAATCCTAGA 57.878 37.037 0.00 0.00 32.93 2.43
368 369 3.041946 GACTCCCCTCCATCAACATAGT 58.958 50.000 0.00 0.00 0.00 2.12
369 370 2.370189 GGACTCCCCTCCATCAACATAG 59.630 54.545 0.00 0.00 0.00 2.23
370 371 2.022035 AGGACTCCCCTCCATCAACATA 60.022 50.000 0.00 0.00 43.31 2.29
371 372 1.216990 GGACTCCCCTCCATCAACAT 58.783 55.000 0.00 0.00 0.00 2.71
372 373 0.119155 AGGACTCCCCTCCATCAACA 59.881 55.000 0.00 0.00 43.31 3.33
462 464 1.666189 GTTTCGCCTTAGGTCATCAGC 59.334 52.381 0.00 0.00 0.00 4.26
518 520 2.637382 TGTCTCACCTTATCAGTTGCCA 59.363 45.455 0.00 0.00 0.00 4.92
520 522 2.668457 CGTGTCTCACCTTATCAGTTGC 59.332 50.000 0.00 0.00 0.00 4.17
743 755 9.533831 ACATACTCCTTTCAGGTTGATTTTATT 57.466 29.630 0.00 0.00 36.53 1.40
822 834 9.771534 TCTGTTCCTTTTTCTTTTTCTTTTTCA 57.228 25.926 0.00 0.00 0.00 2.69
828 840 7.119387 TCTCCTCTGTTCCTTTTTCTTTTTCT 58.881 34.615 0.00 0.00 0.00 2.52
829 841 7.334844 TCTCCTCTGTTCCTTTTTCTTTTTC 57.665 36.000 0.00 0.00 0.00 2.29
872 884 6.187682 TCTGACTTTTCTTGGAAAGGTTCTT 58.812 36.000 8.68 0.00 46.24 2.52
873 885 5.755849 TCTGACTTTTCTTGGAAAGGTTCT 58.244 37.500 8.68 0.00 46.24 3.01
874 886 5.506483 GCTCTGACTTTTCTTGGAAAGGTTC 60.506 44.000 8.68 4.48 46.24 3.62
891 903 1.325943 GCGTAGATGCTTTGCTCTGAC 59.674 52.381 0.00 0.00 0.00 3.51
1098 1140 3.155167 GCGGTGGGGTAGGAGGAG 61.155 72.222 0.00 0.00 0.00 3.69
1205 1247 3.181506 GCTGAAATAAAGAGGTTGCGAGG 60.182 47.826 0.00 0.00 0.00 4.63
1227 1269 3.057736 AGCAGCAAAGCAGATTGTAGTTG 60.058 43.478 0.00 0.00 36.85 3.16
1353 1396 9.856488 TTTCTACAGAGTCATTATACAACTGAC 57.144 33.333 0.00 0.00 39.63 3.51
1416 1459 7.790782 AAGAAGTTAGGAACTCAAGAGATCT 57.209 36.000 3.73 0.00 41.91 2.75
1495 1538 5.413309 ACAATTTTGTGAGGGAACAACAA 57.587 34.783 0.00 0.00 39.70 2.83
1540 1583 6.875972 AAGTATTGGAGGTGAGTAAGTGAT 57.124 37.500 0.00 0.00 0.00 3.06
1640 1683 7.173390 GGTTCTTTAGTATGCAACTCTTTGAGT 59.827 37.037 0.00 0.00 45.64 3.41
1652 1695 6.203723 CCTTAGCAGATGGTTCTTTAGTATGC 59.796 42.308 0.00 0.00 0.00 3.14
1914 1957 6.650807 ACAGTTAAATCGACAACATGTGAGAT 59.349 34.615 0.00 0.00 32.37 2.75
1924 1967 5.733620 AGACCCTACAGTTAAATCGACAA 57.266 39.130 0.00 0.00 0.00 3.18
2065 2108 5.352284 CGAGTTCAGGTATTGAGCAATAGT 58.648 41.667 3.30 0.00 39.29 2.12
2087 2132 4.710324 TGGGTAATCTAAAATAGTGCCCG 58.290 43.478 0.00 0.00 36.48 6.13
2141 2186 7.116948 ACATCGTACAAACAGAAATCAGAGAAG 59.883 37.037 0.00 0.00 0.00 2.85
2278 2323 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2281 2326 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2283 2328 2.284405 GTCTGGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2284 2329 3.400054 GGTCTGGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2285 2330 3.015753 GGGTCTGGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2286 2331 2.125225 AGGGTCTGGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2287 2332 2.204151 CAGGGTCTGGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2288 2333 3.732849 GCAGGGTCTGGGGAAGGG 61.733 72.222 0.00 0.00 31.21 3.95
2289 2334 4.101448 CGCAGGGTCTGGGGAAGG 62.101 72.222 4.35 0.00 40.11 3.46
2290 2335 4.785453 GCGCAGGGTCTGGGGAAG 62.785 72.222 0.30 0.00 43.28 3.46
2302 2347 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2305 2350 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2306 2351 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2307 2352 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2308 2353 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2310 2355 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
2311 2356 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
2312 2357 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
2313 2358 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
2314 2359 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
2315 2360 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
2316 2361 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
2317 2362 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
2318 2363 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
2464 2509 3.399181 CCGGCAGGCTAGACCCAA 61.399 66.667 0.00 0.00 40.58 4.12
2469 2514 2.032860 GCAGAATCCGGCAGGCTAGA 62.033 60.000 0.00 0.00 37.47 2.43
2520 2581 6.113411 ACAGAACCGGAATTTATGTCTAAGG 58.887 40.000 9.46 0.00 0.00 2.69
2535 2596 2.425668 ACAAACTTGGAAACAGAACCGG 59.574 45.455 0.00 0.00 44.54 5.28
2536 2597 3.775661 ACAAACTTGGAAACAGAACCG 57.224 42.857 0.00 0.00 44.54 4.44
2722 2786 1.093972 TTGCCATGATGCTAACACCG 58.906 50.000 0.00 0.00 0.00 4.94
2724 2788 2.159338 CCTGTTGCCATGATGCTAACAC 60.159 50.000 8.12 0.00 32.67 3.32
2780 2844 0.610232 ACTGCTGGATCTTTGTGGCC 60.610 55.000 0.00 0.00 0.00 5.36
2839 2903 6.269307 ACTGGTCCTTAGTGCTTTTTCTACTA 59.731 38.462 0.00 0.00 0.00 1.82
2842 2906 5.562298 ACTGGTCCTTAGTGCTTTTTCTA 57.438 39.130 0.00 0.00 0.00 2.10
2927 2993 2.566279 TGGCTGCCATTGCTAAAATCAA 59.434 40.909 19.30 0.00 38.71 2.57
2934 3000 1.559368 ATGTTTGGCTGCCATTGCTA 58.441 45.000 24.03 3.63 38.71 3.49
2960 3026 2.583441 CCCCACGCACTTCTCCTGA 61.583 63.158 0.00 0.00 0.00 3.86
2981 3047 4.203076 CGGTTCTACTCGGGGGCG 62.203 72.222 0.00 0.00 0.00 6.13
3076 3142 4.467084 TGTCGATCGGGCCTTGGC 62.467 66.667 16.41 2.49 0.00 4.52
3093 3159 5.846714 AGATATGTAGGCCTGGATTTAGTGT 59.153 40.000 17.99 0.00 0.00 3.55
3096 3162 6.377429 TCGTAGATATGTAGGCCTGGATTTAG 59.623 42.308 17.99 0.00 0.00 1.85
3110 3176 4.244066 AGCGTAGATCGTCGTAGATATGT 58.756 43.478 12.45 0.00 40.67 2.29
3115 3181 1.520174 CGAAGCGTAGATCGTCGTAGA 59.480 52.381 12.45 0.00 42.13 2.59
3121 3187 2.412112 GGCCGAAGCGTAGATCGT 59.588 61.111 0.00 0.00 41.24 3.73
3136 3202 1.098050 CTACAGCATCCAAACAGGGC 58.902 55.000 0.00 0.00 38.24 5.19
3137 3203 2.496899 ACTACAGCATCCAAACAGGG 57.503 50.000 0.00 0.00 38.24 4.45
3138 3204 4.832248 TCTAACTACAGCATCCAAACAGG 58.168 43.478 0.00 0.00 39.47 4.00
3139 3205 5.482908 ACTCTAACTACAGCATCCAAACAG 58.517 41.667 0.00 0.00 0.00 3.16
3140 3206 5.483685 ACTCTAACTACAGCATCCAAACA 57.516 39.130 0.00 0.00 0.00 2.83
3141 3207 7.321153 TCTAACTCTAACTACAGCATCCAAAC 58.679 38.462 0.00 0.00 0.00 2.93
3142 3208 7.178628 ACTCTAACTCTAACTACAGCATCCAAA 59.821 37.037 0.00 0.00 0.00 3.28
3143 3209 6.663953 ACTCTAACTCTAACTACAGCATCCAA 59.336 38.462 0.00 0.00 0.00 3.53
3144 3210 6.188407 ACTCTAACTCTAACTACAGCATCCA 58.812 40.000 0.00 0.00 0.00 3.41
3145 3211 6.702716 ACTCTAACTCTAACTACAGCATCC 57.297 41.667 0.00 0.00 0.00 3.51
3146 3212 6.975772 CCAACTCTAACTCTAACTACAGCATC 59.024 42.308 0.00 0.00 0.00 3.91
3147 3213 6.437793 ACCAACTCTAACTCTAACTACAGCAT 59.562 38.462 0.00 0.00 0.00 3.79
3148 3214 5.773680 ACCAACTCTAACTCTAACTACAGCA 59.226 40.000 0.00 0.00 0.00 4.41
3149 3215 6.270156 ACCAACTCTAACTCTAACTACAGC 57.730 41.667 0.00 0.00 0.00 4.40
3150 3216 9.012161 ACTAACCAACTCTAACTCTAACTACAG 57.988 37.037 0.00 0.00 0.00 2.74
3151 3217 8.930846 ACTAACCAACTCTAACTCTAACTACA 57.069 34.615 0.00 0.00 0.00 2.74
3152 3218 9.838975 GAACTAACCAACTCTAACTCTAACTAC 57.161 37.037 0.00 0.00 0.00 2.73
3153 3219 9.578576 TGAACTAACCAACTCTAACTCTAACTA 57.421 33.333 0.00 0.00 0.00 2.24
3154 3220 8.474710 TGAACTAACCAACTCTAACTCTAACT 57.525 34.615 0.00 0.00 0.00 2.24
3155 3221 7.813627 CCTGAACTAACCAACTCTAACTCTAAC 59.186 40.741 0.00 0.00 0.00 2.34
3156 3222 7.525029 GCCTGAACTAACCAACTCTAACTCTAA 60.525 40.741 0.00 0.00 0.00 2.10
3157 3223 6.071503 GCCTGAACTAACCAACTCTAACTCTA 60.072 42.308 0.00 0.00 0.00 2.43
3158 3224 5.279556 GCCTGAACTAACCAACTCTAACTCT 60.280 44.000 0.00 0.00 0.00 3.24
3159 3225 4.930405 GCCTGAACTAACCAACTCTAACTC 59.070 45.833 0.00 0.00 0.00 3.01
3160 3226 4.593634 AGCCTGAACTAACCAACTCTAACT 59.406 41.667 0.00 0.00 0.00 2.24
3161 3227 4.895961 AGCCTGAACTAACCAACTCTAAC 58.104 43.478 0.00 0.00 0.00 2.34
3162 3228 6.675413 TTAGCCTGAACTAACCAACTCTAA 57.325 37.500 0.00 0.00 0.00 2.10
3163 3229 6.269307 AGTTTAGCCTGAACTAACCAACTCTA 59.731 38.462 0.00 0.00 35.68 2.43
3164 3230 5.071923 AGTTTAGCCTGAACTAACCAACTCT 59.928 40.000 0.00 0.00 35.68 3.24
3165 3231 5.306394 AGTTTAGCCTGAACTAACCAACTC 58.694 41.667 0.00 0.00 35.68 3.01
3166 3232 5.306114 AGTTTAGCCTGAACTAACCAACT 57.694 39.130 0.00 0.00 35.68 3.16
3172 3238 8.426569 TCTAAGGTTAGTTTAGCCTGAACTAA 57.573 34.615 15.53 15.53 43.54 2.24
3173 3239 7.123847 CCTCTAAGGTTAGTTTAGCCTGAACTA 59.876 40.741 5.08 5.08 39.52 2.24
3174 3240 6.070710 CCTCTAAGGTTAGTTTAGCCTGAACT 60.071 42.308 7.10 7.10 39.52 3.01
3175 3241 6.070938 TCCTCTAAGGTTAGTTTAGCCTGAAC 60.071 42.308 0.00 0.00 39.52 3.18
3176 3242 6.021030 TCCTCTAAGGTTAGTTTAGCCTGAA 58.979 40.000 0.00 0.00 39.52 3.02
3177 3243 5.586877 TCCTCTAAGGTTAGTTTAGCCTGA 58.413 41.667 0.00 0.00 39.52 3.86
3178 3244 5.934402 TCCTCTAAGGTTAGTTTAGCCTG 57.066 43.478 0.00 0.00 39.52 4.85
3179 3245 5.603395 GGATCCTCTAAGGTTAGTTTAGCCT 59.397 44.000 3.84 0.00 41.55 4.58
3180 3246 5.365895 TGGATCCTCTAAGGTTAGTTTAGCC 59.634 44.000 14.23 0.00 36.53 3.93
3181 3247 6.481434 TGGATCCTCTAAGGTTAGTTTAGC 57.519 41.667 14.23 0.00 36.53 3.09
3182 3248 8.319146 TGTTTGGATCCTCTAAGGTTAGTTTAG 58.681 37.037 14.23 0.00 36.53 1.85
3183 3249 8.209802 TGTTTGGATCCTCTAAGGTTAGTTTA 57.790 34.615 14.23 0.00 36.53 2.01
3184 3250 7.086685 TGTTTGGATCCTCTAAGGTTAGTTT 57.913 36.000 14.23 0.00 36.53 2.66
3185 3251 6.296489 CCTGTTTGGATCCTCTAAGGTTAGTT 60.296 42.308 14.23 0.00 35.61 2.24
3186 3252 5.189934 CCTGTTTGGATCCTCTAAGGTTAGT 59.810 44.000 14.23 0.00 35.61 2.24
3187 3253 5.189934 ACCTGTTTGGATCCTCTAAGGTTAG 59.810 44.000 18.49 4.81 39.71 2.34
3188 3254 5.045869 CACCTGTTTGGATCCTCTAAGGTTA 60.046 44.000 20.51 0.00 39.71 2.85
3189 3255 3.916989 ACCTGTTTGGATCCTCTAAGGTT 59.083 43.478 18.49 7.97 39.71 3.50
3190 3256 3.264450 CACCTGTTTGGATCCTCTAAGGT 59.736 47.826 18.49 18.49 39.71 3.50
3191 3257 3.519510 TCACCTGTTTGGATCCTCTAAGG 59.480 47.826 14.23 16.27 39.71 2.69
3192 3258 4.223923 ACTCACCTGTTTGGATCCTCTAAG 59.776 45.833 14.23 5.76 39.71 2.18
3193 3259 4.168101 ACTCACCTGTTTGGATCCTCTAA 58.832 43.478 14.23 1.84 39.71 2.10
3194 3260 3.791320 ACTCACCTGTTTGGATCCTCTA 58.209 45.455 14.23 0.00 39.71 2.43
3195 3261 2.625639 ACTCACCTGTTTGGATCCTCT 58.374 47.619 14.23 0.00 39.71 3.69
3196 3262 3.425162 AACTCACCTGTTTGGATCCTC 57.575 47.619 14.23 4.34 39.71 3.71
3197 3263 4.168101 TCTAACTCACCTGTTTGGATCCT 58.832 43.478 14.23 0.00 39.71 3.24
3198 3264 4.553330 TCTAACTCACCTGTTTGGATCC 57.447 45.455 4.20 4.20 39.71 3.36
3199 3265 5.755861 GCTATCTAACTCACCTGTTTGGATC 59.244 44.000 0.00 0.00 39.71 3.36
3200 3266 5.189736 TGCTATCTAACTCACCTGTTTGGAT 59.810 40.000 0.00 0.00 39.71 3.41
3201 3267 4.530553 TGCTATCTAACTCACCTGTTTGGA 59.469 41.667 0.00 0.00 39.71 3.53
3202 3268 4.832248 TGCTATCTAACTCACCTGTTTGG 58.168 43.478 0.00 0.00 42.93 3.28
3203 3269 5.482908 ACTGCTATCTAACTCACCTGTTTG 58.517 41.667 0.00 0.00 0.00 2.93
3204 3270 5.746990 ACTGCTATCTAACTCACCTGTTT 57.253 39.130 0.00 0.00 0.00 2.83
3205 3271 5.746990 AACTGCTATCTAACTCACCTGTT 57.253 39.130 0.00 0.00 0.00 3.16
3206 3272 5.952947 ACTAACTGCTATCTAACTCACCTGT 59.047 40.000 0.00 0.00 0.00 4.00
3207 3273 6.458232 ACTAACTGCTATCTAACTCACCTG 57.542 41.667 0.00 0.00 0.00 4.00
3208 3274 6.628398 GCAACTAACTGCTATCTAACTCACCT 60.628 42.308 0.00 0.00 39.34 4.00
3209 3275 5.520649 GCAACTAACTGCTATCTAACTCACC 59.479 44.000 0.00 0.00 39.34 4.02
3210 3276 6.576551 GCAACTAACTGCTATCTAACTCAC 57.423 41.667 0.00 0.00 39.34 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.