Multiple sequence alignment - TraesCS5A01G181700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G181700 chr5A 100.000 5170 0 0 1 5170 381305818 381300649 0.000000e+00 9548.0
1 TraesCS5A01G181700 chr5B 94.623 3478 122 29 938 4370 327601768 327598311 0.000000e+00 5326.0
2 TraesCS5A01G181700 chr5B 80.455 220 21 7 1 220 327602030 327601833 1.160000e-31 148.0
3 TraesCS5A01G181700 chr5B 75.725 276 55 9 331 599 576228467 576228737 1.510000e-25 128.0
4 TraesCS5A01G181700 chr5B 87.097 93 12 0 1547 1639 35173057 35173149 7.080000e-19 106.0
5 TraesCS5A01G181700 chr5B 88.506 87 8 2 4397 4481 327598317 327598231 2.550000e-18 104.0
6 TraesCS5A01G181700 chr5B 80.769 104 19 1 4178 4281 6570994 6571096 4.290000e-11 80.5
7 TraesCS5A01G181700 chr5B 97.297 37 1 0 1259 1295 35172914 35172950 4.320000e-06 63.9
8 TraesCS5A01G181700 chr5D 94.942 3341 113 24 938 4243 288177789 288174470 0.000000e+00 5182.0
9 TraesCS5A01G181700 chr5D 82.462 593 77 7 4604 5170 216063111 216063702 1.290000e-135 494.0
10 TraesCS5A01G181700 chr5D 88.679 265 13 5 4241 4502 288174415 288174165 1.810000e-79 307.0
11 TraesCS5A01G181700 chr5D 76.198 605 100 31 297 889 352847316 352847888 3.940000e-71 279.0
12 TraesCS5A01G181700 chr4A 83.677 582 78 10 4604 5170 162768277 162767698 2.740000e-147 532.0
13 TraesCS5A01G181700 chr4A 75.717 593 98 31 297 876 642550551 642551110 6.640000e-64 255.0
14 TraesCS5A01G181700 chr4A 74.707 597 128 12 308 893 724122503 724121919 1.440000e-60 244.0
15 TraesCS5A01G181700 chr3D 83.366 511 67 11 4676 5170 31977466 31977974 1.700000e-124 457.0
16 TraesCS5A01G181700 chr3D 79.621 211 29 11 309 508 148226034 148225827 6.980000e-29 139.0
17 TraesCS5A01G181700 chr3B 82.510 526 74 7 4623 5131 776252320 776252844 3.670000e-121 446.0
18 TraesCS5A01G181700 chr3B 75.506 494 102 13 331 819 750312562 750313041 1.870000e-54 224.0
19 TraesCS5A01G181700 chr3B 74.450 591 111 25 310 888 96074869 96075431 8.720000e-53 219.0
20 TraesCS5A01G181700 chr3B 79.602 201 34 4 310 504 1229580 1229381 2.510000e-28 137.0
21 TraesCS5A01G181700 chr2B 81.197 585 81 14 4604 5169 793460669 793461243 1.320000e-120 444.0
22 TraesCS5A01G181700 chr2B 78.709 573 112 8 309 873 681736766 681736196 1.760000e-99 374.0
23 TraesCS5A01G181700 chr1D 81.779 461 51 17 4714 5161 318166877 318167317 6.370000e-94 355.0
24 TraesCS5A01G181700 chr1D 86.022 93 13 0 1547 1639 467030773 467030865 3.290000e-17 100.0
25 TraesCS5A01G181700 chr1D 97.561 41 1 0 1128 1168 467030497 467030537 2.580000e-08 71.3
26 TraesCS5A01G181700 chr1D 97.297 37 1 0 1259 1295 467030642 467030678 4.320000e-06 63.9
27 TraesCS5A01G181700 chr2D 79.102 579 72 22 4577 5119 498874835 498875400 2.290000e-93 353.0
28 TraesCS5A01G181700 chr7D 78.189 486 98 5 390 871 549540741 549540260 2.340000e-78 303.0
29 TraesCS5A01G181700 chr7D 76.715 554 109 15 334 876 164641697 164642241 1.820000e-74 291.0
30 TraesCS5A01G181700 chr7D 76.794 418 91 6 465 879 611461442 611461028 4.030000e-56 230.0
31 TraesCS5A01G181700 chr4D 78.856 402 70 10 4764 5161 396624935 396625325 1.850000e-64 257.0
32 TraesCS5A01G181700 chr6A 80.818 318 49 10 585 896 39461443 39461132 6.690000e-59 239.0
33 TraesCS5A01G181700 chr7A 74.957 575 108 25 312 877 287892295 287892842 1.120000e-56 231.0
34 TraesCS5A01G181700 chr1A 86.022 93 13 0 1547 1639 558976494 558976586 3.290000e-17 100.0
35 TraesCS5A01G181700 chr1A 97.561 41 1 0 1128 1168 558976208 558976248 2.580000e-08 71.3
36 TraesCS5A01G181700 chr1A 100.000 37 0 0 1259 1295 558976355 558976391 9.290000e-08 69.4
37 TraesCS5A01G181700 chr1B 86.364 88 12 0 1552 1639 643588158 643588245 4.260000e-16 97.1
38 TraesCS5A01G181700 chr7B 80.702 114 21 1 4157 4270 200923533 200923421 2.560000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G181700 chr5A 381300649 381305818 5169 True 9548.000000 9548 100.000000 1 5170 1 chr5A.!!$R1 5169
1 TraesCS5A01G181700 chr5B 327598231 327602030 3799 True 1859.333333 5326 87.861333 1 4481 3 chr5B.!!$R1 4480
2 TraesCS5A01G181700 chr5D 288174165 288177789 3624 True 2744.500000 5182 91.810500 938 4502 2 chr5D.!!$R1 3564
3 TraesCS5A01G181700 chr5D 216063111 216063702 591 False 494.000000 494 82.462000 4604 5170 1 chr5D.!!$F1 566
4 TraesCS5A01G181700 chr5D 352847316 352847888 572 False 279.000000 279 76.198000 297 889 1 chr5D.!!$F2 592
5 TraesCS5A01G181700 chr4A 162767698 162768277 579 True 532.000000 532 83.677000 4604 5170 1 chr4A.!!$R1 566
6 TraesCS5A01G181700 chr4A 642550551 642551110 559 False 255.000000 255 75.717000 297 876 1 chr4A.!!$F1 579
7 TraesCS5A01G181700 chr4A 724121919 724122503 584 True 244.000000 244 74.707000 308 893 1 chr4A.!!$R2 585
8 TraesCS5A01G181700 chr3D 31977466 31977974 508 False 457.000000 457 83.366000 4676 5170 1 chr3D.!!$F1 494
9 TraesCS5A01G181700 chr3B 776252320 776252844 524 False 446.000000 446 82.510000 4623 5131 1 chr3B.!!$F3 508
10 TraesCS5A01G181700 chr3B 96074869 96075431 562 False 219.000000 219 74.450000 310 888 1 chr3B.!!$F1 578
11 TraesCS5A01G181700 chr2B 793460669 793461243 574 False 444.000000 444 81.197000 4604 5169 1 chr2B.!!$F1 565
12 TraesCS5A01G181700 chr2B 681736196 681736766 570 True 374.000000 374 78.709000 309 873 1 chr2B.!!$R1 564
13 TraesCS5A01G181700 chr2D 498874835 498875400 565 False 353.000000 353 79.102000 4577 5119 1 chr2D.!!$F1 542
14 TraesCS5A01G181700 chr7D 164641697 164642241 544 False 291.000000 291 76.715000 334 876 1 chr7D.!!$F1 542
15 TraesCS5A01G181700 chr7A 287892295 287892842 547 False 231.000000 231 74.957000 312 877 1 chr7A.!!$F1 565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 272 0.107945 CCTTCGCCTCTTCTCCCAAG 60.108 60.0 0.00 0.0 0.00 3.61 F
277 278 0.107945 CCTCTTCTCCCAAGCGAAGG 60.108 60.0 0.00 0.0 37.73 3.46 F
733 750 0.320421 AAGTTTTGCGCGGCTCTAGA 60.320 50.0 8.83 0.0 0.00 2.43 F
1224 1284 0.476771 AGTTTTCCCGCTCCTTTCCA 59.523 50.0 0.00 0.0 0.00 3.53 F
2257 2335 2.173569 GTCCTGGATGCTCCCTGTTATT 59.826 50.0 0.00 0.0 35.03 1.40 F
4014 4119 0.458543 CTCCTTGCATCGCGTGTACT 60.459 55.0 5.77 0.0 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1196 1256 0.323451 GCGGGAAAACTGGGGAAGAT 60.323 55.000 0.00 0.00 0.00 2.40 R
1983 2061 1.617850 TGCATTGCACCGAAATTCCTT 59.382 42.857 7.38 0.00 31.71 3.36 R
2203 2281 4.396357 TCCACATATGGGGAAAAACAGT 57.604 40.909 24.89 0.00 46.41 3.55 R
3009 3109 3.519510 GGCATATCCTCCCAAGCTGTATA 59.480 47.826 0.00 0.00 0.00 1.47 R
4052 4157 0.103390 TATACGTGCACATGGGTCCG 59.897 55.000 18.64 2.23 0.00 4.79 R
4937 5148 0.109086 CATTGACCTCACGAGCGACT 60.109 55.000 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.130118 AGTCAAAGTTGCGTCTTGAAGAT 58.870 39.130 0.00 0.00 0.00 2.40
46 47 5.297547 AGTCAAAGTTGCGTCTTGAAGATA 58.702 37.500 0.00 0.00 0.00 1.98
57 58 9.464714 TTGCGTCTTGAAGATAGTCTATATTTC 57.535 33.333 0.00 5.67 0.00 2.17
81 82 5.106791 CGGATGAATCACTTTGCTGGATATC 60.107 44.000 0.00 0.00 0.00 1.63
82 83 5.182760 GGATGAATCACTTTGCTGGATATCC 59.817 44.000 15.39 15.39 0.00 2.59
83 84 5.114764 TGAATCACTTTGCTGGATATCCA 57.885 39.130 23.17 23.17 45.30 3.41
84 85 4.883585 TGAATCACTTTGCTGGATATCCAC 59.116 41.667 20.98 16.86 42.01 4.02
85 86 2.905075 TCACTTTGCTGGATATCCACG 58.095 47.619 20.98 16.67 42.01 4.94
86 87 2.236146 TCACTTTGCTGGATATCCACGT 59.764 45.455 20.98 9.66 42.01 4.49
87 88 2.352651 CACTTTGCTGGATATCCACGTG 59.647 50.000 20.98 16.59 42.01 4.49
88 89 2.236146 ACTTTGCTGGATATCCACGTGA 59.764 45.455 20.98 6.65 42.01 4.35
89 90 2.602257 TTGCTGGATATCCACGTGAG 57.398 50.000 20.98 11.64 42.01 3.51
90 91 1.775385 TGCTGGATATCCACGTGAGA 58.225 50.000 20.98 13.16 42.01 3.27
91 92 2.107366 TGCTGGATATCCACGTGAGAA 58.893 47.619 20.98 2.22 42.01 2.87
92 93 2.101415 TGCTGGATATCCACGTGAGAAG 59.899 50.000 20.98 9.47 42.01 2.85
93 94 2.362397 GCTGGATATCCACGTGAGAAGA 59.638 50.000 20.98 5.83 42.01 2.87
94 95 3.006323 GCTGGATATCCACGTGAGAAGAT 59.994 47.826 20.98 13.38 42.01 2.40
95 96 4.218635 GCTGGATATCCACGTGAGAAGATA 59.781 45.833 20.98 15.17 42.01 1.98
96 97 5.105554 GCTGGATATCCACGTGAGAAGATAT 60.106 44.000 20.98 19.05 42.01 1.63
97 98 6.095580 GCTGGATATCCACGTGAGAAGATATA 59.904 42.308 20.98 6.08 42.01 0.86
98 99 7.392494 TGGATATCCACGTGAGAAGATATAC 57.608 40.000 20.98 19.62 42.01 1.47
99 100 7.175797 TGGATATCCACGTGAGAAGATATACT 58.824 38.462 20.98 8.92 42.01 2.12
100 101 8.326529 TGGATATCCACGTGAGAAGATATACTA 58.673 37.037 20.98 14.06 42.01 1.82
101 102 9.344772 GGATATCCACGTGAGAAGATATACTAT 57.655 37.037 19.30 4.93 38.49 2.12
126 127 3.934068 TCATCACCTTTTTCTACCGGTC 58.066 45.455 12.40 0.00 0.00 4.79
130 131 3.135167 TCACCTTTTTCTACCGGTCTTGT 59.865 43.478 12.40 0.00 0.00 3.16
152 153 2.300152 TGGTTTGAGTGTTGGTTGCAAA 59.700 40.909 0.00 0.00 0.00 3.68
160 161 3.195396 AGTGTTGGTTGCAAATGTCAAGT 59.805 39.130 0.00 0.00 0.00 3.16
164 165 6.091441 GTGTTGGTTGCAAATGTCAAGTTTTA 59.909 34.615 0.00 0.00 0.00 1.52
194 195 9.522804 TCGCTAAAAATAGTTTGTGAAAACATT 57.477 25.926 4.34 0.48 35.20 2.71
204 205 8.177119 AGTTTGTGAAAACATTAGCCTTATCA 57.823 30.769 4.34 0.00 35.20 2.15
205 206 8.637986 AGTTTGTGAAAACATTAGCCTTATCAA 58.362 29.630 4.34 0.00 35.20 2.57
206 207 9.423061 GTTTGTGAAAACATTAGCCTTATCAAT 57.577 29.630 0.00 0.00 33.08 2.57
207 208 9.995003 TTTGTGAAAACATTAGCCTTATCAATT 57.005 25.926 0.00 0.00 0.00 2.32
208 209 9.995003 TTGTGAAAACATTAGCCTTATCAATTT 57.005 25.926 0.00 0.00 0.00 1.82
215 216 8.622948 ACATTAGCCTTATCAATTTAGGTAGC 57.377 34.615 0.00 0.00 0.00 3.58
216 217 8.217799 ACATTAGCCTTATCAATTTAGGTAGCA 58.782 33.333 0.00 0.00 0.00 3.49
217 218 9.066892 CATTAGCCTTATCAATTTAGGTAGCAA 57.933 33.333 0.00 0.00 0.00 3.91
218 219 9.640952 ATTAGCCTTATCAATTTAGGTAGCAAA 57.359 29.630 0.00 0.00 0.00 3.68
219 220 9.640952 TTAGCCTTATCAATTTAGGTAGCAAAT 57.359 29.630 0.00 0.00 0.00 2.32
220 221 8.539117 AGCCTTATCAATTTAGGTAGCAAATT 57.461 30.769 0.00 2.42 36.31 1.82
222 223 7.653311 GCCTTATCAATTTAGGTAGCAAATTGG 59.347 37.037 25.20 17.32 46.33 3.16
223 224 8.912988 CCTTATCAATTTAGGTAGCAAATTGGA 58.087 33.333 25.20 18.25 46.33 3.53
224 225 9.736023 CTTATCAATTTAGGTAGCAAATTGGAC 57.264 33.333 25.20 0.00 46.33 4.02
225 226 7.716799 ATCAATTTAGGTAGCAAATTGGACA 57.283 32.000 25.20 15.82 46.33 4.02
226 227 6.919721 TCAATTTAGGTAGCAAATTGGACAC 58.080 36.000 25.20 0.00 46.33 3.67
227 228 6.491745 TCAATTTAGGTAGCAAATTGGACACA 59.508 34.615 25.20 13.76 46.33 3.72
228 229 5.957842 TTTAGGTAGCAAATTGGACACAG 57.042 39.130 0.00 0.00 0.00 3.66
229 230 2.795329 AGGTAGCAAATTGGACACAGG 58.205 47.619 0.00 0.00 0.00 4.00
230 231 1.818674 GGTAGCAAATTGGACACAGGG 59.181 52.381 0.00 0.00 0.00 4.45
231 232 2.554344 GGTAGCAAATTGGACACAGGGA 60.554 50.000 0.00 0.00 0.00 4.20
232 233 1.915141 AGCAAATTGGACACAGGGAG 58.085 50.000 0.00 0.00 0.00 4.30
233 234 1.145738 AGCAAATTGGACACAGGGAGT 59.854 47.619 0.00 0.00 0.00 3.85
234 235 1.963515 GCAAATTGGACACAGGGAGTT 59.036 47.619 0.00 0.00 0.00 3.01
235 236 2.365293 GCAAATTGGACACAGGGAGTTT 59.635 45.455 0.00 0.00 0.00 2.66
236 237 3.799917 GCAAATTGGACACAGGGAGTTTG 60.800 47.826 0.00 0.00 0.00 2.93
237 238 3.312736 AATTGGACACAGGGAGTTTGT 57.687 42.857 0.00 0.00 0.00 2.83
239 240 1.208706 TGGACACAGGGAGTTTGTGA 58.791 50.000 11.87 0.00 46.85 3.58
240 241 1.562008 TGGACACAGGGAGTTTGTGAA 59.438 47.619 11.87 0.00 46.85 3.18
241 242 2.222027 GGACACAGGGAGTTTGTGAAG 58.778 52.381 11.87 0.00 46.85 3.02
242 243 2.421529 GGACACAGGGAGTTTGTGAAGT 60.422 50.000 11.87 0.00 46.85 3.01
243 244 3.279434 GACACAGGGAGTTTGTGAAGTT 58.721 45.455 11.87 0.00 46.85 2.66
244 245 4.448210 GACACAGGGAGTTTGTGAAGTTA 58.552 43.478 11.87 0.00 46.85 2.24
245 246 4.850680 ACACAGGGAGTTTGTGAAGTTAA 58.149 39.130 11.87 0.00 46.85 2.01
246 247 5.258051 ACACAGGGAGTTTGTGAAGTTAAA 58.742 37.500 11.87 0.00 46.85 1.52
247 248 5.124936 ACACAGGGAGTTTGTGAAGTTAAAC 59.875 40.000 11.87 0.00 46.85 2.01
248 249 5.124776 CACAGGGAGTTTGTGAAGTTAAACA 59.875 40.000 0.00 0.00 46.85 2.83
249 250 5.124936 ACAGGGAGTTTGTGAAGTTAAACAC 59.875 40.000 0.00 0.00 38.82 3.32
250 251 4.334481 AGGGAGTTTGTGAAGTTAAACACG 59.666 41.667 0.00 0.00 38.82 4.49
251 252 4.496840 GGGAGTTTGTGAAGTTAAACACGG 60.497 45.833 0.00 0.00 38.82 4.94
252 253 4.023739 AGTTTGTGAAGTTAAACACGGC 57.976 40.909 0.00 0.00 38.82 5.68
253 254 3.110358 GTTTGTGAAGTTAAACACGGCC 58.890 45.455 0.00 0.00 39.52 6.13
254 255 2.335316 TGTGAAGTTAAACACGGCCT 57.665 45.000 0.00 0.00 39.52 5.19
255 256 2.645802 TGTGAAGTTAAACACGGCCTT 58.354 42.857 0.00 0.00 39.52 4.35
256 257 2.614983 TGTGAAGTTAAACACGGCCTTC 59.385 45.455 0.00 0.00 39.52 3.46
257 258 1.868498 TGAAGTTAAACACGGCCTTCG 59.132 47.619 0.00 0.00 45.88 3.79
258 259 0.589708 AAGTTAAACACGGCCTTCGC 59.410 50.000 0.00 0.00 43.89 4.70
268 269 2.188207 GCCTTCGCCTCTTCTCCC 59.812 66.667 0.00 0.00 0.00 4.30
269 270 2.660064 GCCTTCGCCTCTTCTCCCA 61.660 63.158 0.00 0.00 0.00 4.37
270 271 1.983224 CCTTCGCCTCTTCTCCCAA 59.017 57.895 0.00 0.00 0.00 4.12
271 272 0.107945 CCTTCGCCTCTTCTCCCAAG 60.108 60.000 0.00 0.00 0.00 3.61
272 273 0.742635 CTTCGCCTCTTCTCCCAAGC 60.743 60.000 0.00 0.00 0.00 4.01
273 274 2.507110 TTCGCCTCTTCTCCCAAGCG 62.507 60.000 0.00 0.00 44.61 4.68
274 275 2.982130 GCCTCTTCTCCCAAGCGA 59.018 61.111 0.00 0.00 0.00 4.93
275 276 1.296715 GCCTCTTCTCCCAAGCGAA 59.703 57.895 0.00 0.00 0.00 4.70
276 277 0.742635 GCCTCTTCTCCCAAGCGAAG 60.743 60.000 0.00 0.00 38.34 3.79
277 278 0.107945 CCTCTTCTCCCAAGCGAAGG 60.108 60.000 0.00 0.00 37.73 3.46
278 279 0.742635 CTCTTCTCCCAAGCGAAGGC 60.743 60.000 0.00 0.00 37.73 4.35
279 280 2.047274 TTCTCCCAAGCGAAGGCG 60.047 61.111 0.00 0.00 46.35 5.52
280 281 3.605749 TTCTCCCAAGCGAAGGCGG 62.606 63.158 0.00 0.00 46.35 6.13
289 290 2.978010 CGAAGGCGGCCAGTGTTT 60.978 61.111 23.09 5.90 0.00 2.83
290 291 2.954611 GAAGGCGGCCAGTGTTTC 59.045 61.111 23.09 11.88 0.00 2.78
291 292 2.597510 AAGGCGGCCAGTGTTTCC 60.598 61.111 23.09 0.00 0.00 3.13
292 293 3.133365 AAGGCGGCCAGTGTTTCCT 62.133 57.895 23.09 0.00 0.00 3.36
293 294 3.365265 GGCGGCCAGTGTTTCCTG 61.365 66.667 15.62 0.00 0.00 3.86
298 299 4.404691 CCAGTGTTTCCTGGCTCC 57.595 61.111 0.00 0.00 45.19 4.70
299 300 1.303643 CCAGTGTTTCCTGGCTCCC 60.304 63.158 0.00 0.00 45.19 4.30
300 301 1.672356 CAGTGTTTCCTGGCTCCCG 60.672 63.158 0.00 0.00 0.00 5.14
301 302 2.147387 AGTGTTTCCTGGCTCCCGT 61.147 57.895 0.00 0.00 0.00 5.28
302 303 1.671379 GTGTTTCCTGGCTCCCGTC 60.671 63.158 0.00 0.00 0.00 4.79
303 304 2.144078 TGTTTCCTGGCTCCCGTCA 61.144 57.895 0.00 0.00 0.00 4.35
304 305 1.376037 GTTTCCTGGCTCCCGTCAG 60.376 63.158 0.00 0.00 42.53 3.51
305 306 3.254024 TTTCCTGGCTCCCGTCAGC 62.254 63.158 0.00 0.00 41.55 4.26
384 388 5.335661 GGGCTTCGTTGTTAGATGTTTCAAT 60.336 40.000 0.00 0.00 0.00 2.57
415 422 3.181448 GGGTTTGTGTCCTTAGGAAGACA 60.181 47.826 0.98 6.41 31.38 3.41
449 456 3.567585 GCTTCCTGAAGATGGAATAAGGC 59.432 47.826 11.00 0.00 42.03 4.35
457 464 3.933886 AGATGGAATAAGGCTCTCCTCA 58.066 45.455 10.53 0.00 43.40 3.86
461 468 2.367241 GGAATAAGGCTCTCCTCACCTC 59.633 54.545 0.00 0.00 43.40 3.85
468 475 2.037367 CTCCTCACCTCGTCCCCA 59.963 66.667 0.00 0.00 0.00 4.96
472 479 1.381872 CTCACCTCGTCCCCATCCT 60.382 63.158 0.00 0.00 0.00 3.24
508 519 0.684535 TCATCAGAAGGCGTGTGGAA 59.315 50.000 0.00 0.00 0.00 3.53
517 528 1.021968 GGCGTGTGGAAGTTTGTCTT 58.978 50.000 0.00 0.00 39.32 3.01
518 529 1.404035 GGCGTGTGGAAGTTTGTCTTT 59.596 47.619 0.00 0.00 36.40 2.52
531 542 3.953712 TTGTCTTTGGCAGATCTCGTA 57.046 42.857 0.00 0.00 32.60 3.43
532 543 3.953712 TGTCTTTGGCAGATCTCGTAA 57.046 42.857 0.00 0.00 32.60 3.18
539 550 9.946862 GTCTTTGGCAGATCTCGTAAGATTCGA 62.947 44.444 0.00 0.00 42.46 3.71
553 564 4.713824 AGATTCGATCGGTGTTTGTCTA 57.286 40.909 16.41 0.00 0.00 2.59
554 565 4.421948 AGATTCGATCGGTGTTTGTCTAC 58.578 43.478 16.41 0.00 0.00 2.59
564 575 1.972075 TGTTTGTCTACGGTGGATCCA 59.028 47.619 11.44 11.44 35.57 3.41
583 594 2.480419 CCACGTGGATCAAGTCTTTGTC 59.520 50.000 31.31 0.00 37.39 3.18
587 598 3.139077 GTGGATCAAGTCTTTGTCCGTT 58.861 45.455 0.00 0.00 37.33 4.44
607 618 4.031991 CGTTTACGTTTGTGTGTCTTCAGA 59.968 41.667 0.00 0.00 34.11 3.27
613 624 4.035091 CGTTTGTGTGTCTTCAGATTGGAA 59.965 41.667 0.00 0.00 0.00 3.53
627 641 5.046529 CAGATTGGAACCTTCTGATCTACG 58.953 45.833 14.55 0.00 39.36 3.51
630 644 2.832129 TGGAACCTTCTGATCTACGCTT 59.168 45.455 0.00 0.00 0.00 4.68
631 645 3.119101 TGGAACCTTCTGATCTACGCTTC 60.119 47.826 0.00 0.00 0.00 3.86
632 646 3.131400 GGAACCTTCTGATCTACGCTTCT 59.869 47.826 0.00 0.00 0.00 2.85
633 647 4.382147 GGAACCTTCTGATCTACGCTTCTT 60.382 45.833 0.00 0.00 0.00 2.52
636 650 5.552178 ACCTTCTGATCTACGCTTCTTTTT 58.448 37.500 0.00 0.00 0.00 1.94
639 653 7.824779 ACCTTCTGATCTACGCTTCTTTTTATT 59.175 33.333 0.00 0.00 0.00 1.40
653 667 4.828387 TCTTTTTATTGGCGGTGGTTACTT 59.172 37.500 0.00 0.00 0.00 2.24
674 688 0.396556 TCTGGTGCGCTGGTCCTATA 60.397 55.000 9.73 0.00 0.00 1.31
680 697 1.817911 GCGCTGGTCCTATAGGGTCC 61.818 65.000 18.97 19.61 42.47 4.46
692 709 2.677542 TAGGGTCCTAGCACGATGAT 57.322 50.000 0.00 0.00 0.00 2.45
694 711 1.689273 AGGGTCCTAGCACGATGATTC 59.311 52.381 0.00 0.00 0.00 2.52
700 717 1.273606 CTAGCACGATGATTCCCCGAT 59.726 52.381 0.00 0.00 0.00 4.18
704 721 2.288666 CACGATGATTCCCCGATTGTT 58.711 47.619 0.00 0.00 0.00 2.83
705 722 2.287915 CACGATGATTCCCCGATTGTTC 59.712 50.000 0.00 0.00 0.00 3.18
709 726 3.433306 TGATTCCCCGATTGTTCACTT 57.567 42.857 0.00 0.00 0.00 3.16
723 740 3.917380 TGTTCACTTCAACAAGTTTTGCG 59.083 39.130 0.00 0.00 41.24 4.85
730 747 1.724582 AACAAGTTTTGCGCGGCTCT 61.725 50.000 8.83 0.00 0.00 4.09
733 750 0.320421 AAGTTTTGCGCGGCTCTAGA 60.320 50.000 8.83 0.00 0.00 2.43
749 766 3.934962 GAGAGGGAGGGGCGATGC 61.935 72.222 0.00 0.00 0.00 3.91
750 767 4.488911 AGAGGGAGGGGCGATGCT 62.489 66.667 0.00 0.00 0.00 3.79
752 769 4.804420 AGGGAGGGGCGATGCTGA 62.804 66.667 0.00 0.00 0.00 4.26
812 829 2.425102 GCTAGGTGGTCTAGGGATCTGT 60.425 54.545 0.00 0.00 44.32 3.41
819 836 5.010820 GGTGGTCTAGGGATCTGTATGTAAC 59.989 48.000 0.00 0.00 0.00 2.50
824 841 7.711339 GGTCTAGGGATCTGTATGTAACTTTTG 59.289 40.741 0.00 0.00 0.00 2.44
843 860 9.581099 AACTTTTGTTATTTCTTGTGTTCGATT 57.419 25.926 0.00 0.00 41.50 3.34
859 876 7.148590 TGTGTTCGATTTACTGTCATGATTGAG 60.149 37.037 0.00 0.00 30.85 3.02
889 906 5.914898 AGATCGGAAATTACCCCAAAAAG 57.085 39.130 0.00 0.00 0.00 2.27
893 910 4.021807 TCGGAAATTACCCCAAAAAGAAGC 60.022 41.667 0.00 0.00 0.00 3.86
903 920 5.841783 ACCCCAAAAAGAAGCAATTTAGGTA 59.158 36.000 0.00 0.00 0.00 3.08
979 1033 2.354821 CGCACTAGCCTCATAAAAACCC 59.645 50.000 0.00 0.00 37.52 4.11
1060 1114 1.758906 GGTCCTTCCTCTCCTCCCG 60.759 68.421 0.00 0.00 0.00 5.14
1061 1115 1.000612 GTCCTTCCTCTCCTCCCGT 59.999 63.158 0.00 0.00 0.00 5.28
1062 1116 1.038681 GTCCTTCCTCTCCTCCCGTC 61.039 65.000 0.00 0.00 0.00 4.79
1063 1117 1.758906 CCTTCCTCTCCTCCCGTCC 60.759 68.421 0.00 0.00 0.00 4.79
1064 1118 1.758906 CTTCCTCTCCTCCCGTCCC 60.759 68.421 0.00 0.00 0.00 4.46
1065 1119 3.312989 TTCCTCTCCTCCCGTCCCC 62.313 68.421 0.00 0.00 0.00 4.81
1184 1244 1.730501 GGTAACTAACCCTTCCGTGC 58.269 55.000 0.00 0.00 43.16 5.34
1188 1248 2.047655 TAACCCTTCCGTGCGCTG 60.048 61.111 9.73 0.08 0.00 5.18
1200 1260 1.005037 TGCGCTGTCGTTCCATCTT 60.005 52.632 9.73 0.00 38.14 2.40
1224 1284 0.476771 AGTTTTCCCGCTCCTTTCCA 59.523 50.000 0.00 0.00 0.00 3.53
1405 1483 8.558973 AGATCCTCTAATCTCTTGTTTGTTTG 57.441 34.615 0.00 0.00 29.89 2.93
1412 1490 6.421377 AATCTCTTGTTTGTTTGTTTTGGC 57.579 33.333 0.00 0.00 0.00 4.52
1415 1493 6.329496 TCTCTTGTTTGTTTGTTTTGGCTAG 58.671 36.000 0.00 0.00 0.00 3.42
1645 1723 4.271049 CAGTCGCCATATGAAGGTGTTAAG 59.729 45.833 3.65 0.00 37.86 1.85
1646 1724 4.081087 AGTCGCCATATGAAGGTGTTAAGT 60.081 41.667 3.65 0.00 37.86 2.24
1788 1866 8.377681 TCAACTGTACTAAGAAAATTTATCGCG 58.622 33.333 0.00 0.00 0.00 5.87
1905 1983 5.473039 AGAAACAAAGCAGCCATATTTGTC 58.527 37.500 10.10 1.34 44.18 3.18
1929 2007 5.178623 CGTGTGCCACAACTAAGAGAAATAA 59.821 40.000 0.00 0.00 33.40 1.40
1957 2035 9.967346 ATATATATAGTATAACCTTGCTGTGCG 57.033 33.333 0.00 0.00 0.00 5.34
1958 2036 2.762535 AGTATAACCTTGCTGTGCGT 57.237 45.000 0.00 0.00 0.00 5.24
1983 2061 5.288015 CACACATGGTTTAGCACAATTCAA 58.712 37.500 0.00 0.00 0.00 2.69
2062 2140 5.984926 TCTTGTTTCTGCAAAATTCATGGAC 59.015 36.000 0.00 0.00 0.00 4.02
2138 2216 8.862325 ATTTTCTGTTGGTATCACATAGACAA 57.138 30.769 0.00 0.00 0.00 3.18
2203 2281 7.116075 TCCTAAATAGGCTTGCAATTAAGTCA 58.884 34.615 0.00 0.00 43.31 3.41
2257 2335 2.173569 GTCCTGGATGCTCCCTGTTATT 59.826 50.000 0.00 0.00 35.03 1.40
2294 2372 7.420002 TCAATTCTCAACACAAACTTCTGATG 58.580 34.615 0.00 0.00 0.00 3.07
2302 2380 4.889409 ACACAAACTTCTGATGTGGTTCAT 59.111 37.500 12.28 0.00 46.67 2.57
2303 2381 5.360714 ACACAAACTTCTGATGTGGTTCATT 59.639 36.000 12.28 0.00 46.67 2.57
2407 2496 6.855836 TCTTTAATGTTGGCTATTTCTGCAG 58.144 36.000 7.63 7.63 0.00 4.41
2435 2524 6.596106 TGCTGTCTTGTTAACTGTTAGTTTGA 59.404 34.615 7.22 0.00 39.51 2.69
2545 2634 8.331742 GCTTTATTTCAAGTATCTCAGTGCTAC 58.668 37.037 0.00 0.00 0.00 3.58
2653 2742 6.726299 AGCCCATATGTGTAGCTAAGATTCTA 59.274 38.462 0.00 0.00 32.95 2.10
2674 2763 9.669353 ATTCTATCGCAGCTTAACAAATAAATG 57.331 29.630 0.00 0.00 0.00 2.32
2792 2891 6.931840 GTGTTGAGAGGACTTAGATTTGTCTT 59.068 38.462 0.00 0.00 34.01 3.01
2946 3046 6.783708 TCCAAACATTGACAAGGTAAGTTT 57.216 33.333 5.83 3.38 0.00 2.66
3100 3200 5.207768 CAGTTCTTTTGAGGTGAATGTTCG 58.792 41.667 0.00 0.00 0.00 3.95
3105 3205 2.254546 TGAGGTGAATGTTCGTGCTT 57.745 45.000 0.00 0.00 0.00 3.91
3203 3303 7.657023 AGTCGGTACTTCTATAGAAACCATT 57.343 36.000 25.68 13.70 34.88 3.16
3240 3340 9.309224 ACTGGACTAAATAGCATTTTTAGGTTT 57.691 29.630 13.97 0.00 39.76 3.27
3358 3458 3.372349 GCCAGGCATATCATATGGGATGT 60.372 47.826 6.55 0.00 0.00 3.06
3374 3474 5.478407 TGGGATGTATACAGTCATTATGCG 58.522 41.667 11.91 0.00 0.00 4.73
3383 3483 2.628178 CAGTCATTATGCGGAGACCCTA 59.372 50.000 0.00 0.00 0.00 3.53
3431 3533 7.541091 AGTTGATGACACTAAATGTACAGTACG 59.459 37.037 0.33 0.00 43.56 3.67
3588 3693 9.643693 ACTTGGAAATATTTGCTGAAACATAAG 57.356 29.630 18.92 13.48 0.00 1.73
3822 3927 9.798994 AAAATATAGCAGATTTTTCTCAAGCAG 57.201 29.630 0.00 0.00 33.68 4.24
4014 4119 0.458543 CTCCTTGCATCGCGTGTACT 60.459 55.000 5.77 0.00 0.00 2.73
4066 4171 3.118454 CGACGGACCCATGTGCAC 61.118 66.667 10.75 10.75 32.24 4.57
4075 4180 3.630312 GGACCCATGTGCACGTATATTTT 59.370 43.478 12.10 0.00 32.24 1.82
4077 4182 4.013728 ACCCATGTGCACGTATATTTTGT 58.986 39.130 12.10 0.00 0.00 2.83
4135 4240 2.226674 GTGTGCCTTTTCTTGCTCTACC 59.773 50.000 0.00 0.00 0.00 3.18
4137 4242 2.744741 GTGCCTTTTCTTGCTCTACCTC 59.255 50.000 0.00 0.00 0.00 3.85
4236 4342 2.881074 TGTGAGCGAGAGAATAGTTGC 58.119 47.619 0.00 0.00 0.00 4.17
4332 4496 3.960571 TGTGGTGGTCTAGTAGTCTACC 58.039 50.000 18.72 18.72 35.95 3.18
4359 4523 3.827302 CCCCGAGTAATATGTAGAGCTGT 59.173 47.826 0.00 0.00 0.00 4.40
4361 4525 4.321304 CCCGAGTAATATGTAGAGCTGTGG 60.321 50.000 0.00 0.00 0.00 4.17
4362 4526 4.230657 CGAGTAATATGTAGAGCTGTGGC 58.769 47.826 0.00 0.00 39.06 5.01
4364 4528 3.637229 AGTAATATGTAGAGCTGTGGCGT 59.363 43.478 0.00 0.00 44.37 5.68
4365 4529 4.825634 AGTAATATGTAGAGCTGTGGCGTA 59.174 41.667 0.00 0.00 44.37 4.42
4366 4530 3.924918 ATATGTAGAGCTGTGGCGTAG 57.075 47.619 0.00 0.00 44.37 3.51
4367 4531 1.763968 ATGTAGAGCTGTGGCGTAGA 58.236 50.000 0.00 0.00 44.37 2.59
4368 4532 1.095600 TGTAGAGCTGTGGCGTAGAG 58.904 55.000 0.00 0.00 44.37 2.43
4369 4533 0.248702 GTAGAGCTGTGGCGTAGAGC 60.249 60.000 0.00 3.36 45.57 4.09
4378 4542 2.663196 GCGTAGAGCTGGGTTGGT 59.337 61.111 0.00 0.00 44.04 3.67
4379 4543 1.448013 GCGTAGAGCTGGGTTGGTC 60.448 63.158 0.00 0.00 44.04 4.02
4380 4544 1.889530 GCGTAGAGCTGGGTTGGTCT 61.890 60.000 0.00 0.00 45.33 3.85
4381 4545 0.608640 CGTAGAGCTGGGTTGGTCTT 59.391 55.000 0.00 0.00 43.46 3.01
4391 4555 4.564821 GCTGGGTTGGTCTTAGTGATGTAA 60.565 45.833 0.00 0.00 0.00 2.41
4422 4586 1.878102 CGGTGGTCAGTTCCTTCCTTG 60.878 57.143 0.00 0.00 0.00 3.61
4428 4592 4.401202 TGGTCAGTTCCTTCCTTGTTTTTC 59.599 41.667 0.00 0.00 0.00 2.29
4429 4593 4.645136 GGTCAGTTCCTTCCTTGTTTTTCT 59.355 41.667 0.00 0.00 0.00 2.52
4433 4599 3.680777 TCCTTCCTTGTTTTTCTGGGT 57.319 42.857 0.00 0.00 0.00 4.51
4434 4600 3.989056 TCCTTCCTTGTTTTTCTGGGTT 58.011 40.909 0.00 0.00 0.00 4.11
4445 4611 6.241645 TGTTTTTCTGGGTTTTGTTTTCCAT 58.758 32.000 0.00 0.00 0.00 3.41
4446 4612 6.717084 TGTTTTTCTGGGTTTTGTTTTCCATT 59.283 30.769 0.00 0.00 0.00 3.16
4452 4618 5.119694 TGGGTTTTGTTTTCCATTAGCAAC 58.880 37.500 0.00 0.00 0.00 4.17
4490 4656 8.443160 CGTCAGTTTTTATGTGATTCACTGTAT 58.557 33.333 17.26 5.94 35.11 2.29
4496 4662 8.415950 TTTTATGTGATTCACTGTATGGGTTT 57.584 30.769 17.26 0.00 35.11 3.27
4502 4668 6.597672 GTGATTCACTGTATGGGTTTATGTGA 59.402 38.462 9.59 0.00 0.00 3.58
4503 4669 7.283127 GTGATTCACTGTATGGGTTTATGTGAT 59.717 37.037 9.59 0.00 33.80 3.06
4504 4670 7.833682 TGATTCACTGTATGGGTTTATGTGATT 59.166 33.333 0.00 0.00 33.80 2.57
4505 4671 7.624360 TTCACTGTATGGGTTTATGTGATTC 57.376 36.000 0.00 0.00 33.80 2.52
4506 4672 6.716284 TCACTGTATGGGTTTATGTGATTCA 58.284 36.000 0.00 0.00 0.00 2.57
4507 4673 6.597672 TCACTGTATGGGTTTATGTGATTCAC 59.402 38.462 9.93 9.93 34.56 3.18
4508 4674 5.885912 ACTGTATGGGTTTATGTGATTCACC 59.114 40.000 14.05 0.00 32.73 4.02
4509 4675 5.197451 TGTATGGGTTTATGTGATTCACCC 58.803 41.667 14.05 7.49 32.73 4.61
4510 4676 3.094484 TGGGTTTATGTGATTCACCCC 57.906 47.619 16.83 16.83 35.18 4.95
4511 4677 2.021457 GGGTTTATGTGATTCACCCCG 58.979 52.381 14.05 0.00 32.73 5.73
4512 4678 2.021457 GGTTTATGTGATTCACCCCGG 58.979 52.381 14.05 0.00 32.73 5.73
4513 4679 2.619590 GGTTTATGTGATTCACCCCGGT 60.620 50.000 14.05 0.00 32.73 5.28
4514 4680 3.086282 GTTTATGTGATTCACCCCGGTT 58.914 45.455 14.05 0.00 32.73 4.44
4515 4681 4.263435 GTTTATGTGATTCACCCCGGTTA 58.737 43.478 14.05 0.00 32.73 2.85
4516 4682 4.571369 TTATGTGATTCACCCCGGTTAA 57.429 40.909 14.05 1.21 32.73 2.01
4517 4683 2.953284 TGTGATTCACCCCGGTTAAA 57.047 45.000 14.05 0.00 32.73 1.52
4518 4684 3.443145 TGTGATTCACCCCGGTTAAAT 57.557 42.857 14.05 0.00 32.73 1.40
4519 4685 3.768878 TGTGATTCACCCCGGTTAAATT 58.231 40.909 14.05 0.00 32.73 1.82
4520 4686 4.153411 TGTGATTCACCCCGGTTAAATTT 58.847 39.130 14.05 0.00 32.73 1.82
4521 4687 4.021894 TGTGATTCACCCCGGTTAAATTTG 60.022 41.667 14.05 0.00 32.73 2.32
4522 4688 4.021807 GTGATTCACCCCGGTTAAATTTGT 60.022 41.667 5.44 0.00 0.00 2.83
4523 4689 4.021894 TGATTCACCCCGGTTAAATTTGTG 60.022 41.667 0.00 0.00 0.00 3.33
4524 4690 2.946785 TCACCCCGGTTAAATTTGTGT 58.053 42.857 0.00 0.00 0.00 3.72
4525 4691 2.623889 TCACCCCGGTTAAATTTGTGTG 59.376 45.455 0.00 0.00 0.00 3.82
4526 4692 2.362717 CACCCCGGTTAAATTTGTGTGT 59.637 45.455 0.00 0.00 0.00 3.72
4527 4693 2.362717 ACCCCGGTTAAATTTGTGTGTG 59.637 45.455 0.00 0.00 0.00 3.82
4528 4694 2.362717 CCCCGGTTAAATTTGTGTGTGT 59.637 45.455 0.00 0.00 0.00 3.72
4529 4695 3.376540 CCCGGTTAAATTTGTGTGTGTG 58.623 45.455 0.00 0.00 0.00 3.82
4530 4696 3.376540 CCGGTTAAATTTGTGTGTGTGG 58.623 45.455 0.00 0.00 0.00 4.17
4531 4697 3.066900 CCGGTTAAATTTGTGTGTGTGGA 59.933 43.478 0.00 0.00 0.00 4.02
4532 4698 4.286910 CGGTTAAATTTGTGTGTGTGGAG 58.713 43.478 0.00 0.00 0.00 3.86
4533 4699 4.616953 GGTTAAATTTGTGTGTGTGGAGG 58.383 43.478 0.00 0.00 0.00 4.30
4534 4700 4.098807 GGTTAAATTTGTGTGTGTGGAGGT 59.901 41.667 0.00 0.00 0.00 3.85
4535 4701 5.299782 GGTTAAATTTGTGTGTGTGGAGGTA 59.700 40.000 0.00 0.00 0.00 3.08
4536 4702 6.015772 GGTTAAATTTGTGTGTGTGGAGGTAT 60.016 38.462 0.00 0.00 0.00 2.73
4537 4703 7.430441 GTTAAATTTGTGTGTGTGGAGGTATT 58.570 34.615 0.00 0.00 0.00 1.89
4538 4704 5.452078 AATTTGTGTGTGTGGAGGTATTG 57.548 39.130 0.00 0.00 0.00 1.90
4539 4705 2.559698 TGTGTGTGTGGAGGTATTGG 57.440 50.000 0.00 0.00 0.00 3.16
4540 4706 1.771854 TGTGTGTGTGGAGGTATTGGT 59.228 47.619 0.00 0.00 0.00 3.67
4541 4707 2.973406 TGTGTGTGTGGAGGTATTGGTA 59.027 45.455 0.00 0.00 0.00 3.25
4542 4708 3.585289 TGTGTGTGTGGAGGTATTGGTAT 59.415 43.478 0.00 0.00 0.00 2.73
4543 4709 4.042311 TGTGTGTGTGGAGGTATTGGTATT 59.958 41.667 0.00 0.00 0.00 1.89
4544 4710 4.394920 GTGTGTGTGGAGGTATTGGTATTG 59.605 45.833 0.00 0.00 0.00 1.90
4545 4711 3.945285 GTGTGTGGAGGTATTGGTATTGG 59.055 47.826 0.00 0.00 0.00 3.16
4546 4712 2.949644 GTGTGGAGGTATTGGTATTGGC 59.050 50.000 0.00 0.00 0.00 4.52
4547 4713 2.218603 GTGGAGGTATTGGTATTGGCG 58.781 52.381 0.00 0.00 0.00 5.69
4548 4714 1.142060 TGGAGGTATTGGTATTGGCGG 59.858 52.381 0.00 0.00 0.00 6.13
4549 4715 1.142262 GGAGGTATTGGTATTGGCGGT 59.858 52.381 0.00 0.00 0.00 5.68
4550 4716 2.422377 GGAGGTATTGGTATTGGCGGTT 60.422 50.000 0.00 0.00 0.00 4.44
4551 4717 2.616842 GAGGTATTGGTATTGGCGGTTG 59.383 50.000 0.00 0.00 0.00 3.77
4552 4718 2.240160 AGGTATTGGTATTGGCGGTTGA 59.760 45.455 0.00 0.00 0.00 3.18
4553 4719 2.356695 GGTATTGGTATTGGCGGTTGAC 59.643 50.000 0.00 0.00 0.00 3.18
4555 4721 0.250381 TTGGTATTGGCGGTTGACGT 60.250 50.000 0.00 0.00 46.52 4.34
4556 4722 0.951525 TGGTATTGGCGGTTGACGTG 60.952 55.000 0.00 0.00 46.52 4.49
4557 4723 1.133869 GTATTGGCGGTTGACGTGC 59.866 57.895 0.00 0.00 46.52 5.34
4558 4724 1.004320 TATTGGCGGTTGACGTGCT 60.004 52.632 0.00 0.00 46.52 4.40
4559 4725 0.246910 TATTGGCGGTTGACGTGCTA 59.753 50.000 0.00 0.00 46.52 3.49
4560 4726 1.296056 ATTGGCGGTTGACGTGCTAC 61.296 55.000 0.00 0.00 46.52 3.58
4561 4727 3.116531 GGCGGTTGACGTGCTACC 61.117 66.667 0.00 0.34 46.52 3.18
4562 4728 2.356553 GCGGTTGACGTGCTACCA 60.357 61.111 14.85 0.00 46.52 3.25
4563 4729 2.380410 GCGGTTGACGTGCTACCAG 61.380 63.158 14.85 10.30 46.52 4.00
4564 4730 2.380410 CGGTTGACGTGCTACCAGC 61.380 63.158 14.85 0.00 41.74 4.85
4595 4761 1.002087 CAAACTCCAACGCTAGACCCT 59.998 52.381 0.00 0.00 0.00 4.34
4619 4793 2.464865 CGGATGTCTGGATTTCGTCTC 58.535 52.381 0.00 0.00 0.00 3.36
4629 4803 2.290071 GGATTTCGTCTCTTTGGGGTGA 60.290 50.000 0.00 0.00 0.00 4.02
4882 5093 0.526954 CACGCGCCGTATAAGACCTT 60.527 55.000 5.73 0.00 38.32 3.50
4891 5102 2.733227 CGTATAAGACCTTGCCGTCGTT 60.733 50.000 0.00 0.00 37.85 3.85
4905 5116 3.112075 CGTTGCTGATGCCGTCGT 61.112 61.111 0.00 0.00 38.71 4.34
4920 5131 2.879462 CGTAGCCGCCGTCTTCAC 60.879 66.667 0.00 0.00 0.00 3.18
4937 5148 4.728102 CGCGCCACCGTCCTTGTA 62.728 66.667 0.00 0.00 36.67 2.41
4953 5164 0.604511 TGTAGTCGCTCGTGAGGTCA 60.605 55.000 0.00 0.00 0.00 4.02
5058 5271 4.740822 GTTGGCGCTGGGGGTGAT 62.741 66.667 7.64 0.00 0.00 3.06
5069 5282 2.125673 GGGTGATGACCACGACGG 60.126 66.667 3.00 0.00 46.62 4.79
5121 5346 1.668294 CTCCTGCTTGACGTCCAGT 59.332 57.895 17.09 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.803659 CGAAATATAGACTATCTTCAAGACGCA 59.196 37.037 0.00 0.00 0.00 5.24
46 47 9.265901 CAAAGTGATTCATCCGAAATATAGACT 57.734 33.333 0.00 0.00 34.01 3.24
57 58 2.358957 TCCAGCAAAGTGATTCATCCG 58.641 47.619 0.00 0.00 0.00 4.18
97 98 9.326413 CGGTAGAAAAAGGTGATGAAATATAGT 57.674 33.333 0.00 0.00 0.00 2.12
98 99 8.774586 CCGGTAGAAAAAGGTGATGAAATATAG 58.225 37.037 0.00 0.00 0.00 1.31
99 100 8.269317 ACCGGTAGAAAAAGGTGATGAAATATA 58.731 33.333 4.49 0.00 35.36 0.86
100 101 7.116736 ACCGGTAGAAAAAGGTGATGAAATAT 58.883 34.615 4.49 0.00 35.36 1.28
101 102 6.478129 ACCGGTAGAAAAAGGTGATGAAATA 58.522 36.000 4.49 0.00 35.36 1.40
102 103 5.321927 ACCGGTAGAAAAAGGTGATGAAAT 58.678 37.500 4.49 0.00 35.36 2.17
103 104 4.721132 ACCGGTAGAAAAAGGTGATGAAA 58.279 39.130 4.49 0.00 35.36 2.69
104 105 4.041198 AGACCGGTAGAAAAAGGTGATGAA 59.959 41.667 7.34 0.00 37.07 2.57
105 106 3.581332 AGACCGGTAGAAAAAGGTGATGA 59.419 43.478 7.34 0.00 37.07 2.92
106 107 3.939066 AGACCGGTAGAAAAAGGTGATG 58.061 45.455 7.34 0.00 37.07 3.07
107 108 4.202430 ACAAGACCGGTAGAAAAAGGTGAT 60.202 41.667 7.34 0.00 37.07 3.06
108 109 3.135167 ACAAGACCGGTAGAAAAAGGTGA 59.865 43.478 7.34 0.00 37.07 4.02
109 110 3.473625 ACAAGACCGGTAGAAAAAGGTG 58.526 45.455 7.34 0.00 37.07 4.00
110 111 3.851458 ACAAGACCGGTAGAAAAAGGT 57.149 42.857 7.34 0.00 40.11 3.50
111 112 3.252458 CCAACAAGACCGGTAGAAAAAGG 59.748 47.826 7.34 0.31 0.00 3.11
121 122 1.333619 CACTCAAACCAACAAGACCGG 59.666 52.381 0.00 0.00 0.00 5.28
126 127 3.866883 ACCAACACTCAAACCAACAAG 57.133 42.857 0.00 0.00 0.00 3.16
130 131 1.895798 TGCAACCAACACTCAAACCAA 59.104 42.857 0.00 0.00 0.00 3.67
152 153 9.691362 ATTTTTAGCGATGTTAAAACTTGACAT 57.309 25.926 0.00 0.00 36.76 3.06
164 165 9.522804 TTTTCACAAACTATTTTTAGCGATGTT 57.477 25.926 0.00 0.00 0.00 2.71
179 180 8.177119 TGATAAGGCTAATGTTTTCACAAACT 57.823 30.769 0.00 0.00 42.61 2.66
189 190 9.067986 GCTACCTAAATTGATAAGGCTAATGTT 57.932 33.333 0.00 0.00 33.42 2.71
194 195 9.640952 AATTTGCTACCTAAATTGATAAGGCTA 57.359 29.630 0.00 0.00 36.63 3.93
203 204 6.686630 TGTGTCCAATTTGCTACCTAAATTG 58.313 36.000 13.43 13.43 46.98 2.32
204 205 6.071391 CCTGTGTCCAATTTGCTACCTAAATT 60.071 38.462 0.00 0.00 38.02 1.82
205 206 5.418840 CCTGTGTCCAATTTGCTACCTAAAT 59.581 40.000 0.00 0.00 0.00 1.40
206 207 4.764823 CCTGTGTCCAATTTGCTACCTAAA 59.235 41.667 0.00 0.00 0.00 1.85
207 208 4.331968 CCTGTGTCCAATTTGCTACCTAA 58.668 43.478 0.00 0.00 0.00 2.69
208 209 3.308117 CCCTGTGTCCAATTTGCTACCTA 60.308 47.826 0.00 0.00 0.00 3.08
209 210 2.555227 CCCTGTGTCCAATTTGCTACCT 60.555 50.000 0.00 0.00 0.00 3.08
210 211 1.818674 CCCTGTGTCCAATTTGCTACC 59.181 52.381 0.00 0.00 0.00 3.18
211 212 2.749621 CTCCCTGTGTCCAATTTGCTAC 59.250 50.000 0.00 0.00 0.00 3.58
212 213 2.375174 ACTCCCTGTGTCCAATTTGCTA 59.625 45.455 0.00 0.00 0.00 3.49
213 214 1.145738 ACTCCCTGTGTCCAATTTGCT 59.854 47.619 0.00 0.00 0.00 3.91
214 215 1.620822 ACTCCCTGTGTCCAATTTGC 58.379 50.000 0.00 0.00 0.00 3.68
215 216 3.384467 ACAAACTCCCTGTGTCCAATTTG 59.616 43.478 0.00 0.00 33.17 2.32
216 217 3.384467 CACAAACTCCCTGTGTCCAATTT 59.616 43.478 0.00 0.00 39.48 1.82
217 218 2.958355 CACAAACTCCCTGTGTCCAATT 59.042 45.455 0.00 0.00 39.48 2.32
218 219 2.174639 TCACAAACTCCCTGTGTCCAAT 59.825 45.455 3.14 0.00 43.79 3.16
219 220 1.562008 TCACAAACTCCCTGTGTCCAA 59.438 47.619 3.14 0.00 43.79 3.53
220 221 1.208706 TCACAAACTCCCTGTGTCCA 58.791 50.000 3.14 0.00 43.79 4.02
221 222 2.222027 CTTCACAAACTCCCTGTGTCC 58.778 52.381 3.14 0.00 43.79 4.02
222 223 2.919228 ACTTCACAAACTCCCTGTGTC 58.081 47.619 3.14 0.00 43.79 3.67
223 224 3.366052 AACTTCACAAACTCCCTGTGT 57.634 42.857 3.14 0.00 43.79 3.72
224 225 5.124776 TGTTTAACTTCACAAACTCCCTGTG 59.875 40.000 0.00 0.00 44.57 3.66
225 226 5.124936 GTGTTTAACTTCACAAACTCCCTGT 59.875 40.000 0.00 0.00 35.98 4.00
226 227 5.578776 GTGTTTAACTTCACAAACTCCCTG 58.421 41.667 0.00 0.00 35.98 4.45
227 228 4.334481 CGTGTTTAACTTCACAAACTCCCT 59.666 41.667 0.00 0.00 35.98 4.20
228 229 4.496840 CCGTGTTTAACTTCACAAACTCCC 60.497 45.833 0.00 0.00 35.98 4.30
229 230 4.594136 CCGTGTTTAACTTCACAAACTCC 58.406 43.478 0.00 0.00 35.98 3.85
230 231 4.033019 GCCGTGTTTAACTTCACAAACTC 58.967 43.478 0.00 0.00 35.98 3.01
231 232 3.181494 GGCCGTGTTTAACTTCACAAACT 60.181 43.478 0.00 0.00 35.98 2.66
232 233 3.110358 GGCCGTGTTTAACTTCACAAAC 58.890 45.455 0.00 0.00 35.63 2.93
233 234 3.018149 AGGCCGTGTTTAACTTCACAAA 58.982 40.909 0.00 0.00 34.66 2.83
234 235 2.645802 AGGCCGTGTTTAACTTCACAA 58.354 42.857 0.00 0.00 34.66 3.33
235 236 2.335316 AGGCCGTGTTTAACTTCACA 57.665 45.000 0.00 0.00 34.66 3.58
236 237 2.349155 CGAAGGCCGTGTTTAACTTCAC 60.349 50.000 0.00 0.00 37.89 3.18
237 238 1.868498 CGAAGGCCGTGTTTAACTTCA 59.132 47.619 0.00 0.00 37.89 3.02
238 239 1.399343 GCGAAGGCCGTGTTTAACTTC 60.399 52.381 0.00 0.00 41.15 3.01
239 240 0.589708 GCGAAGGCCGTGTTTAACTT 59.410 50.000 0.00 0.00 41.15 2.66
240 241 2.241171 GCGAAGGCCGTGTTTAACT 58.759 52.632 0.00 0.00 41.15 2.24
241 242 4.832767 GCGAAGGCCGTGTTTAAC 57.167 55.556 0.00 0.00 41.15 2.01
252 253 0.107945 CTTGGGAGAAGAGGCGAAGG 60.108 60.000 0.00 0.00 0.00 3.46
253 254 0.742635 GCTTGGGAGAAGAGGCGAAG 60.743 60.000 0.00 0.00 0.00 3.79
254 255 1.296715 GCTTGGGAGAAGAGGCGAA 59.703 57.895 0.00 0.00 0.00 4.70
255 256 2.982130 GCTTGGGAGAAGAGGCGA 59.018 61.111 0.00 0.00 0.00 5.54
256 257 2.507110 TTCGCTTGGGAGAAGAGGCG 62.507 60.000 0.00 0.00 43.22 5.52
257 258 1.296715 TTCGCTTGGGAGAAGAGGC 59.703 57.895 0.00 0.00 0.00 4.70
261 262 2.103042 CGCCTTCGCTTGGGAGAAG 61.103 63.158 3.22 3.22 44.94 2.85
262 263 2.047274 CGCCTTCGCTTGGGAGAA 60.047 61.111 0.00 0.00 0.00 2.87
263 264 4.082523 CCGCCTTCGCTTGGGAGA 62.083 66.667 0.00 0.00 0.00 3.71
272 273 2.966309 GAAACACTGGCCGCCTTCG 61.966 63.158 11.61 1.67 0.00 3.79
273 274 2.626780 GGAAACACTGGCCGCCTTC 61.627 63.158 11.61 5.39 0.00 3.46
274 275 2.597510 GGAAACACTGGCCGCCTT 60.598 61.111 11.61 0.00 0.00 4.35
275 276 3.570212 AGGAAACACTGGCCGCCT 61.570 61.111 11.61 0.00 0.00 5.52
276 277 3.365265 CAGGAAACACTGGCCGCC 61.365 66.667 1.04 1.04 34.84 6.13
282 283 1.672356 CGGGAGCCAGGAAACACTG 60.672 63.158 0.00 0.00 38.21 3.66
283 284 2.113243 GACGGGAGCCAGGAAACACT 62.113 60.000 0.00 0.00 0.00 3.55
284 285 1.671379 GACGGGAGCCAGGAAACAC 60.671 63.158 0.00 0.00 0.00 3.32
285 286 2.111999 CTGACGGGAGCCAGGAAACA 62.112 60.000 0.00 0.00 36.63 2.83
286 287 1.376037 CTGACGGGAGCCAGGAAAC 60.376 63.158 0.00 0.00 36.63 2.78
287 288 3.068881 CTGACGGGAGCCAGGAAA 58.931 61.111 0.00 0.00 36.63 3.13
288 289 3.706373 GCTGACGGGAGCCAGGAA 61.706 66.667 0.00 0.00 41.01 3.36
299 300 3.932580 TAAGGCCACAGCGCTGACG 62.933 63.158 42.03 29.81 41.24 4.35
300 301 2.047274 TAAGGCCACAGCGCTGAC 60.047 61.111 42.03 28.30 41.24 3.51
301 302 2.265739 CTAAGGCCACAGCGCTGA 59.734 61.111 42.03 18.15 41.24 4.26
302 303 2.821366 CCTAAGGCCACAGCGCTG 60.821 66.667 34.89 34.89 41.24 5.18
303 304 4.101448 CCCTAAGGCCACAGCGCT 62.101 66.667 2.64 2.64 41.24 5.92
324 325 4.570663 GGATCCTCCGCGTCCACG 62.571 72.222 3.84 0.00 43.27 4.94
335 336 3.017581 AGCAAAGGCCGGGATCCT 61.018 61.111 12.58 0.00 42.56 3.24
389 393 5.370289 TCTTCCTAAGGACACAAACCCTAAA 59.630 40.000 0.00 0.00 31.36 1.85
406 410 0.606604 GCCACCGTCTTGTCTTCCTA 59.393 55.000 0.00 0.00 0.00 2.94
415 422 4.699522 GGAAGCCGCCACCGTCTT 62.700 66.667 0.00 0.00 35.08 3.01
449 456 1.755008 GGGGACGAGGTGAGGAGAG 60.755 68.421 0.00 0.00 0.00 3.20
481 488 2.035704 ACGCCTTCTGATGATGCTAGAG 59.964 50.000 0.00 0.00 0.00 2.43
508 519 3.070018 CGAGATCTGCCAAAGACAAACT 58.930 45.455 0.00 0.00 37.88 2.66
517 528 3.380320 TCGAATCTTACGAGATCTGCCAA 59.620 43.478 0.00 0.00 41.78 4.52
518 529 2.949644 TCGAATCTTACGAGATCTGCCA 59.050 45.455 0.00 0.00 41.78 4.92
531 542 3.926616 AGACAAACACCGATCGAATCTT 58.073 40.909 18.66 1.56 0.00 2.40
532 543 3.594603 AGACAAACACCGATCGAATCT 57.405 42.857 18.66 5.39 0.00 2.40
539 550 1.337447 CCACCGTAGACAAACACCGAT 60.337 52.381 0.00 0.00 0.00 4.18
553 564 2.602267 TCCACGTGGATCCACCGT 60.602 61.111 34.05 29.79 43.49 4.83
564 575 2.767505 GGACAAAGACTTGATCCACGT 58.232 47.619 11.49 0.00 34.99 4.49
573 584 4.392754 ACAAACGTAAACGGACAAAGACTT 59.607 37.500 7.50 0.00 44.95 3.01
574 585 3.934579 ACAAACGTAAACGGACAAAGACT 59.065 39.130 7.50 0.00 44.95 3.24
583 594 3.062369 TGAAGACACACAAACGTAAACGG 59.938 43.478 7.50 0.00 44.95 4.44
587 598 5.007234 CCAATCTGAAGACACACAAACGTAA 59.993 40.000 0.00 0.00 0.00 3.18
607 618 3.452627 AGCGTAGATCAGAAGGTTCCAAT 59.547 43.478 0.00 0.00 0.00 3.16
613 624 4.810191 AAAGAAGCGTAGATCAGAAGGT 57.190 40.909 0.00 0.00 0.00 3.50
627 641 2.029380 ACCACCGCCAATAAAAAGAAGC 60.029 45.455 0.00 0.00 0.00 3.86
630 644 4.400120 AGTAACCACCGCCAATAAAAAGA 58.600 39.130 0.00 0.00 0.00 2.52
631 645 4.776795 AGTAACCACCGCCAATAAAAAG 57.223 40.909 0.00 0.00 0.00 2.27
632 646 5.532664 AAAGTAACCACCGCCAATAAAAA 57.467 34.783 0.00 0.00 0.00 1.94
633 647 5.302313 AGAAAAGTAACCACCGCCAATAAAA 59.698 36.000 0.00 0.00 0.00 1.52
636 650 3.754323 CAGAAAAGTAACCACCGCCAATA 59.246 43.478 0.00 0.00 0.00 1.90
639 653 1.600023 CAGAAAAGTAACCACCGCCA 58.400 50.000 0.00 0.00 0.00 5.69
653 667 1.476845 TAGGACCAGCGCACCAGAAA 61.477 55.000 11.47 0.00 0.00 2.52
674 688 1.689273 GAATCATCGTGCTAGGACCCT 59.311 52.381 8.99 0.00 0.00 4.34
680 697 0.673985 TCGGGGAATCATCGTGCTAG 59.326 55.000 0.00 0.00 0.00 3.42
692 709 2.882137 GTTGAAGTGAACAATCGGGGAA 59.118 45.455 0.00 0.00 0.00 3.97
694 711 2.226330 TGTTGAAGTGAACAATCGGGG 58.774 47.619 0.00 0.00 32.84 5.73
700 717 4.384247 CGCAAAACTTGTTGAAGTGAACAA 59.616 37.500 0.00 0.00 41.87 2.83
704 721 2.525055 GCGCAAAACTTGTTGAAGTGA 58.475 42.857 0.30 0.00 41.87 3.41
705 722 1.252524 CGCGCAAAACTTGTTGAAGTG 59.747 47.619 8.75 0.00 41.87 3.16
709 726 1.587613 GCCGCGCAAAACTTGTTGA 60.588 52.632 8.75 0.00 0.00 3.18
723 740 1.901464 CCTCCCTCTCTAGAGCCGC 60.901 68.421 15.35 0.00 40.75 6.53
730 747 1.153989 CATCGCCCCTCCCTCTCTA 59.846 63.158 0.00 0.00 0.00 2.43
733 750 4.488911 AGCATCGCCCCTCCCTCT 62.489 66.667 0.00 0.00 0.00 3.69
767 784 5.442909 CGACAACTATAAGCACTGAAACGAC 60.443 44.000 0.00 0.00 0.00 4.34
771 788 4.566004 AGCGACAACTATAAGCACTGAAA 58.434 39.130 0.00 0.00 0.00 2.69
824 841 9.314501 GACAGTAAATCGAACACAAGAAATAAC 57.685 33.333 0.00 0.00 0.00 1.89
859 876 6.940298 TGGGGTAATTTCCGATCTATTCATTC 59.060 38.462 0.00 0.00 0.00 2.67
879 896 4.658435 ACCTAAATTGCTTCTTTTTGGGGT 59.342 37.500 0.00 0.00 35.85 4.95
889 906 6.856895 ACTGATTTGCTACCTAAATTGCTTC 58.143 36.000 0.00 0.00 0.00 3.86
938 956 4.520874 TGCGGAGAGATAGGATTTAGACTG 59.479 45.833 0.00 0.00 0.00 3.51
941 959 4.730966 AGTGCGGAGAGATAGGATTTAGA 58.269 43.478 0.00 0.00 0.00 2.10
979 1033 3.243401 GCAGTTTAGTCCCTGTTGTTTGG 60.243 47.826 0.00 0.00 0.00 3.28
1184 1244 1.084370 GGGAAGATGGAACGACAGCG 61.084 60.000 0.00 0.00 44.79 5.18
1188 1248 0.613777 ACTGGGGAAGATGGAACGAC 59.386 55.000 0.00 0.00 0.00 4.34
1196 1256 0.323451 GCGGGAAAACTGGGGAAGAT 60.323 55.000 0.00 0.00 0.00 2.40
1200 1260 2.754375 GAGCGGGAAAACTGGGGA 59.246 61.111 0.00 0.00 0.00 4.81
1224 1284 4.451774 CACCGAAAATCACCAAAATTGCAT 59.548 37.500 0.00 0.00 0.00 3.96
1288 1348 1.761784 GCATCTCAGATCTCACCTGGT 59.238 52.381 0.00 0.00 32.73 4.00
1663 1741 5.847670 GGCAACTAAAGTACAGAACAGAG 57.152 43.478 0.00 0.00 0.00 3.35
1716 1794 5.394883 CCATTTCAACAGCCAATTAGAGCAT 60.395 40.000 0.00 0.00 0.00 3.79
1788 1866 9.561069 ACAAATCACTATAAGAATCCACATACC 57.439 33.333 0.00 0.00 0.00 2.73
1854 1932 5.927281 ATGGCATCACTTTGCTCTAAAAT 57.073 34.783 0.00 0.00 42.38 1.82
1878 1956 8.096414 ACAAATATGGCTGCTTTGTTTCTTAAT 58.904 29.630 10.74 0.00 39.41 1.40
1957 2035 2.050477 GTGCTAAACCATGTGTGCAC 57.950 50.000 10.75 10.75 42.69 4.57
1958 2036 1.685148 TGTGCTAAACCATGTGTGCA 58.315 45.000 0.00 0.00 0.00 4.57
1983 2061 1.617850 TGCATTGCACCGAAATTCCTT 59.382 42.857 7.38 0.00 31.71 3.36
2018 2096 6.259167 ACAAGAGCGTTCAATAACTTACACAA 59.741 34.615 1.01 0.00 33.15 3.33
2020 2098 6.224420 ACAAGAGCGTTCAATAACTTACAC 57.776 37.500 1.01 0.00 33.15 2.90
2022 2100 7.530861 CAGAAACAAGAGCGTTCAATAACTTAC 59.469 37.037 1.01 0.00 33.15 2.34
2023 2101 7.572759 CAGAAACAAGAGCGTTCAATAACTTA 58.427 34.615 1.01 0.00 33.15 2.24
2024 2102 6.430451 CAGAAACAAGAGCGTTCAATAACTT 58.570 36.000 1.01 0.00 33.15 2.66
2099 2177 9.533831 ACCAACAGAAAATATAAACCTCTTCAT 57.466 29.630 0.00 0.00 0.00 2.57
2121 2199 7.795047 AGATGATGTTGTCTATGTGATACCAA 58.205 34.615 0.00 0.00 0.00 3.67
2203 2281 4.396357 TCCACATATGGGGAAAAACAGT 57.604 40.909 24.89 0.00 46.41 3.55
2303 2381 6.979465 TGCAGTAATCATCACATGACAAAAA 58.021 32.000 0.00 0.00 43.01 1.94
2384 2462 6.624423 ACTGCAGAAATAGCCAACATTAAAG 58.376 36.000 23.35 0.00 0.00 1.85
2387 2465 6.238731 GCATACTGCAGAAATAGCCAACATTA 60.239 38.462 23.35 0.00 44.26 1.90
2407 2496 7.653767 ACTAACAGTTAACAAGACAGCATAC 57.346 36.000 8.61 0.00 0.00 2.39
2435 2524 7.496346 TTGAATACTCCTCCTGACAAGTAAT 57.504 36.000 0.00 0.00 0.00 1.89
2598 2687 6.007076 TGAATTGGGTGCACATAAGAACTTA 58.993 36.000 20.43 0.00 0.00 2.24
2653 2742 6.531240 CCAACATTTATTTGTTAAGCTGCGAT 59.469 34.615 0.00 0.00 37.73 4.58
2723 2812 5.738909 TCTTCCTCAAACTCATCAAGATCC 58.261 41.667 0.00 0.00 0.00 3.36
2808 2907 7.621428 ATCAATGTAACCACTCAATCTGAAG 57.379 36.000 0.00 0.00 0.00 3.02
2946 3046 9.537852 ACGTATATAAGGGGTCAGAATATAACA 57.462 33.333 0.69 0.00 0.00 2.41
3008 3108 4.164988 GGCATATCCTCCCAAGCTGTATAT 59.835 45.833 0.00 0.00 0.00 0.86
3009 3109 3.519510 GGCATATCCTCCCAAGCTGTATA 59.480 47.826 0.00 0.00 0.00 1.47
3240 3340 7.831691 TCCATTTCACAAAACTATTTCAGGA 57.168 32.000 0.00 0.00 0.00 3.86
3254 3354 8.058235 TGTCCCATTTCTAATATCCATTTCACA 58.942 33.333 0.00 0.00 0.00 3.58
3322 3422 2.622942 TGCCTGGCTTTTTAGTGTGAAG 59.377 45.455 21.03 0.00 0.00 3.02
3358 3458 4.219944 GGGTCTCCGCATAATGACTGTATA 59.780 45.833 0.00 0.00 0.00 1.47
3374 3474 6.301169 TCTTTCATTTCTTCTAGGGTCTCC 57.699 41.667 0.00 0.00 0.00 3.71
3431 3533 2.113433 CAGTGCCAGCAGCTCCATC 61.113 63.158 0.00 0.00 44.23 3.51
3558 3663 9.995003 TGTTTCAGCAAATATTTCCAAGTAAAT 57.005 25.926 0.00 0.00 33.69 1.40
3588 3693 4.613031 GCTCAACTCGTTTGAACTTTATGC 59.387 41.667 4.24 0.02 43.90 3.14
3591 3696 5.113383 TCTGCTCAACTCGTTTGAACTTTA 58.887 37.500 4.24 0.00 43.90 1.85
3822 3927 1.201181 TGCACAATATGAAACCGGCAC 59.799 47.619 0.00 0.00 0.00 5.01
4052 4157 0.103390 TATACGTGCACATGGGTCCG 59.897 55.000 18.64 2.23 0.00 4.79
4065 4170 8.284693 GGTACAACACTCAAACAAAATATACGT 58.715 33.333 0.00 0.00 0.00 3.57
4066 4171 7.476183 CGGTACAACACTCAAACAAAATATACG 59.524 37.037 0.00 0.00 0.00 3.06
4075 4180 7.279536 TGTTTATTACGGTACAACACTCAAACA 59.720 33.333 0.00 0.49 0.00 2.83
4077 4182 7.783090 TGTTTATTACGGTACAACACTCAAA 57.217 32.000 0.00 0.00 0.00 2.69
4135 4240 2.555757 CAGGAAAGGCCAAGAAGTTGAG 59.444 50.000 5.01 0.00 40.02 3.02
4137 4242 1.615392 CCAGGAAAGGCCAAGAAGTTG 59.385 52.381 5.01 0.00 40.02 3.16
4236 4342 8.436046 AACTCTATCTAGAAACTACTACCACG 57.564 38.462 0.00 0.00 0.00 4.94
4332 4496 5.927115 GCTCTACATATTACTCGGGGAAAAG 59.073 44.000 0.00 0.00 0.00 2.27
4359 4523 2.662596 CAACCCAGCTCTACGCCA 59.337 61.111 0.00 0.00 40.39 5.69
4361 4525 1.448013 GACCAACCCAGCTCTACGC 60.448 63.158 0.00 0.00 39.57 4.42
4362 4526 0.608640 AAGACCAACCCAGCTCTACG 59.391 55.000 0.00 0.00 0.00 3.51
4364 4528 2.832129 CACTAAGACCAACCCAGCTCTA 59.168 50.000 0.00 0.00 0.00 2.43
4365 4529 1.625818 CACTAAGACCAACCCAGCTCT 59.374 52.381 0.00 0.00 0.00 4.09
4366 4530 1.623811 TCACTAAGACCAACCCAGCTC 59.376 52.381 0.00 0.00 0.00 4.09
4367 4531 1.729586 TCACTAAGACCAACCCAGCT 58.270 50.000 0.00 0.00 0.00 4.24
4368 4532 2.290323 ACATCACTAAGACCAACCCAGC 60.290 50.000 0.00 0.00 0.00 4.85
4369 4533 3.703001 ACATCACTAAGACCAACCCAG 57.297 47.619 0.00 0.00 0.00 4.45
4370 4534 5.496556 CATTACATCACTAAGACCAACCCA 58.503 41.667 0.00 0.00 0.00 4.51
4371 4535 4.881850 CCATTACATCACTAAGACCAACCC 59.118 45.833 0.00 0.00 0.00 4.11
4372 4536 5.497474 ACCATTACATCACTAAGACCAACC 58.503 41.667 0.00 0.00 0.00 3.77
4373 4537 9.477484 CTATACCATTACATCACTAAGACCAAC 57.523 37.037 0.00 0.00 0.00 3.77
4374 4538 9.429109 TCTATACCATTACATCACTAAGACCAA 57.571 33.333 0.00 0.00 0.00 3.67
4375 4539 9.078990 CTCTATACCATTACATCACTAAGACCA 57.921 37.037 0.00 0.00 0.00 4.02
4376 4540 8.030106 GCTCTATACCATTACATCACTAAGACC 58.970 40.741 0.00 0.00 0.00 3.85
4377 4541 7.751348 CGCTCTATACCATTACATCACTAAGAC 59.249 40.741 0.00 0.00 0.00 3.01
4378 4542 7.094334 CCGCTCTATACCATTACATCACTAAGA 60.094 40.741 0.00 0.00 0.00 2.10
4379 4543 7.030165 CCGCTCTATACCATTACATCACTAAG 58.970 42.308 0.00 0.00 0.00 2.18
4380 4544 6.492429 ACCGCTCTATACCATTACATCACTAA 59.508 38.462 0.00 0.00 0.00 2.24
4381 4545 6.008331 ACCGCTCTATACCATTACATCACTA 58.992 40.000 0.00 0.00 0.00 2.74
4391 4555 1.964223 CTGACCACCGCTCTATACCAT 59.036 52.381 0.00 0.00 0.00 3.55
4422 4586 6.751514 ATGGAAAACAAAACCCAGAAAAAC 57.248 33.333 0.00 0.00 31.48 2.43
4428 4592 4.954875 TGCTAATGGAAAACAAAACCCAG 58.045 39.130 0.00 0.00 31.48 4.45
4429 4593 5.119694 GTTGCTAATGGAAAACAAAACCCA 58.880 37.500 0.00 0.00 0.00 4.51
4433 4599 4.688021 AGCGTTGCTAATGGAAAACAAAA 58.312 34.783 0.00 0.00 36.99 2.44
4434 4600 4.314740 AGCGTTGCTAATGGAAAACAAA 57.685 36.364 0.00 0.00 36.99 2.83
4445 4611 4.161333 GACGTTAGTTCTAGCGTTGCTAA 58.839 43.478 19.01 0.00 40.82 3.09
4446 4612 3.189080 TGACGTTAGTTCTAGCGTTGCTA 59.811 43.478 19.01 0.00 40.44 3.49
4452 4618 5.571778 AAAAACTGACGTTAGTTCTAGCG 57.428 39.130 23.94 12.90 39.86 4.26
4496 4662 4.571369 TTTAACCGGGGTGAATCACATA 57.429 40.909 15.86 0.00 35.86 2.29
4502 4668 3.898741 ACACAAATTTAACCGGGGTGAAT 59.101 39.130 6.32 0.00 0.00 2.57
4503 4669 3.068307 CACACAAATTTAACCGGGGTGAA 59.932 43.478 6.32 0.00 0.00 3.18
4504 4670 2.623889 CACACAAATTTAACCGGGGTGA 59.376 45.455 6.32 0.00 0.00 4.02
4505 4671 2.362717 ACACACAAATTTAACCGGGGTG 59.637 45.455 6.32 6.36 0.00 4.61
4506 4672 2.362717 CACACACAAATTTAACCGGGGT 59.637 45.455 6.32 0.00 0.00 4.95
4507 4673 2.362717 ACACACACAAATTTAACCGGGG 59.637 45.455 6.32 0.00 0.00 5.73
4508 4674 3.376540 CACACACACAAATTTAACCGGG 58.623 45.455 6.32 0.00 0.00 5.73
4509 4675 3.066900 TCCACACACACAAATTTAACCGG 59.933 43.478 0.00 0.00 0.00 5.28
4510 4676 4.286910 CTCCACACACACAAATTTAACCG 58.713 43.478 0.00 0.00 0.00 4.44
4511 4677 4.098807 ACCTCCACACACACAAATTTAACC 59.901 41.667 0.00 0.00 0.00 2.85
4512 4678 5.257082 ACCTCCACACACACAAATTTAAC 57.743 39.130 0.00 0.00 0.00 2.01
4513 4679 7.429633 CAATACCTCCACACACACAAATTTAA 58.570 34.615 0.00 0.00 0.00 1.52
4514 4680 6.015856 CCAATACCTCCACACACACAAATTTA 60.016 38.462 0.00 0.00 0.00 1.40
4515 4681 5.221422 CCAATACCTCCACACACACAAATTT 60.221 40.000 0.00 0.00 0.00 1.82
4516 4682 4.280677 CCAATACCTCCACACACACAAATT 59.719 41.667 0.00 0.00 0.00 1.82
4517 4683 3.826157 CCAATACCTCCACACACACAAAT 59.174 43.478 0.00 0.00 0.00 2.32
4518 4684 3.218453 CCAATACCTCCACACACACAAA 58.782 45.455 0.00 0.00 0.00 2.83
4519 4685 2.173782 ACCAATACCTCCACACACACAA 59.826 45.455 0.00 0.00 0.00 3.33
4520 4686 1.771854 ACCAATACCTCCACACACACA 59.228 47.619 0.00 0.00 0.00 3.72
4521 4687 2.561478 ACCAATACCTCCACACACAC 57.439 50.000 0.00 0.00 0.00 3.82
4522 4688 4.566697 CCAATACCAATACCTCCACACACA 60.567 45.833 0.00 0.00 0.00 3.72
4523 4689 3.945285 CCAATACCAATACCTCCACACAC 59.055 47.826 0.00 0.00 0.00 3.82
4524 4690 3.623703 GCCAATACCAATACCTCCACACA 60.624 47.826 0.00 0.00 0.00 3.72
4525 4691 2.949644 GCCAATACCAATACCTCCACAC 59.050 50.000 0.00 0.00 0.00 3.82
4526 4692 2.420827 CGCCAATACCAATACCTCCACA 60.421 50.000 0.00 0.00 0.00 4.17
4527 4693 2.218603 CGCCAATACCAATACCTCCAC 58.781 52.381 0.00 0.00 0.00 4.02
4528 4694 1.142060 CCGCCAATACCAATACCTCCA 59.858 52.381 0.00 0.00 0.00 3.86
4529 4695 1.142262 ACCGCCAATACCAATACCTCC 59.858 52.381 0.00 0.00 0.00 4.30
4530 4696 2.616842 CAACCGCCAATACCAATACCTC 59.383 50.000 0.00 0.00 0.00 3.85
4531 4697 2.240160 TCAACCGCCAATACCAATACCT 59.760 45.455 0.00 0.00 0.00 3.08
4532 4698 2.356695 GTCAACCGCCAATACCAATACC 59.643 50.000 0.00 0.00 0.00 2.73
4533 4699 2.031191 CGTCAACCGCCAATACCAATAC 59.969 50.000 0.00 0.00 0.00 1.89
4534 4700 2.281517 CGTCAACCGCCAATACCAATA 58.718 47.619 0.00 0.00 0.00 1.90
4535 4701 1.091537 CGTCAACCGCCAATACCAAT 58.908 50.000 0.00 0.00 0.00 3.16
4536 4702 0.250381 ACGTCAACCGCCAATACCAA 60.250 50.000 0.00 0.00 41.42 3.67
4537 4703 0.951525 CACGTCAACCGCCAATACCA 60.952 55.000 0.00 0.00 41.42 3.25
4538 4704 1.791662 CACGTCAACCGCCAATACC 59.208 57.895 0.00 0.00 41.42 2.73
4539 4705 1.133869 GCACGTCAACCGCCAATAC 59.866 57.895 0.00 0.00 41.42 1.89
4540 4706 0.246910 TAGCACGTCAACCGCCAATA 59.753 50.000 0.00 0.00 41.42 1.90
4541 4707 1.004320 TAGCACGTCAACCGCCAAT 60.004 52.632 0.00 0.00 41.42 3.16
4542 4708 1.957186 GTAGCACGTCAACCGCCAA 60.957 57.895 0.00 0.00 41.42 4.52
4543 4709 2.356553 GTAGCACGTCAACCGCCA 60.357 61.111 0.00 0.00 41.42 5.69
4544 4710 3.116531 GGTAGCACGTCAACCGCC 61.117 66.667 0.00 0.00 41.42 6.13
4545 4711 2.356553 TGGTAGCACGTCAACCGC 60.357 61.111 6.12 0.00 41.42 5.68
4546 4712 2.380410 GCTGGTAGCACGTCAACCG 61.380 63.158 6.12 3.26 41.89 4.44
4547 4713 3.562635 GCTGGTAGCACGTCAACC 58.437 61.111 3.97 3.97 41.89 3.77
4567 4733 0.879090 CGTTGGAGTTTGGCCTTACC 59.121 55.000 3.32 1.01 39.84 2.85
4568 4734 0.240145 GCGTTGGAGTTTGGCCTTAC 59.760 55.000 3.32 1.38 0.00 2.34
4569 4735 0.109723 AGCGTTGGAGTTTGGCCTTA 59.890 50.000 3.32 0.00 0.00 2.69
4570 4736 0.109723 TAGCGTTGGAGTTTGGCCTT 59.890 50.000 3.32 0.00 0.00 4.35
4571 4737 0.321653 CTAGCGTTGGAGTTTGGCCT 60.322 55.000 3.32 0.00 0.00 5.19
4572 4738 0.321298 TCTAGCGTTGGAGTTTGGCC 60.321 55.000 0.00 0.00 0.00 5.36
4573 4739 0.796927 GTCTAGCGTTGGAGTTTGGC 59.203 55.000 0.00 0.00 0.00 4.52
4574 4740 1.439679 GGTCTAGCGTTGGAGTTTGG 58.560 55.000 0.00 0.00 0.00 3.28
4575 4741 1.002087 AGGGTCTAGCGTTGGAGTTTG 59.998 52.381 0.00 0.00 0.00 2.93
4595 4761 2.963101 ACGAAATCCAGACATCCGGATA 59.037 45.455 18.63 0.00 41.28 2.59
4619 4793 0.704076 TCCCCATTCTCACCCCAAAG 59.296 55.000 0.00 0.00 0.00 2.77
4629 4803 1.123928 GACATCCGTCTCCCCATTCT 58.876 55.000 0.00 0.00 39.22 2.40
4686 4860 0.485099 ACAAGTTATGGTTGGGGCCA 59.515 50.000 4.39 0.00 43.48 5.36
4727 4909 5.033326 AAATGCCTTATTTTGCTTTTGCG 57.967 34.783 0.00 0.00 38.77 4.85
4774 4970 4.885325 AGGACGGCGGATTTTTAAATATGT 59.115 37.500 13.24 0.00 0.00 2.29
4803 4999 7.412853 AATTAAACTAAGTGTTGTGGTTGGT 57.587 32.000 0.00 0.00 39.13 3.67
4864 5075 0.526954 CAAGGTCTTATACGGCGCGT 60.527 55.000 6.90 5.65 44.35 6.01
4872 5083 2.883574 CAACGACGGCAAGGTCTTATA 58.116 47.619 0.00 0.00 34.75 0.98
4874 5085 0.947180 GCAACGACGGCAAGGTCTTA 60.947 55.000 0.00 0.00 34.75 2.10
4882 5093 3.422303 GCATCAGCAACGACGGCA 61.422 61.111 0.00 0.00 41.58 5.69
4891 5102 2.202743 GCTACGACGGCATCAGCA 60.203 61.111 0.00 0.00 44.61 4.41
4905 5116 4.789075 GCGTGAAGACGGCGGCTA 62.789 66.667 19.29 0.00 46.20 3.93
4920 5131 4.728102 TACAAGGACGGTGGCGCG 62.728 66.667 0.00 0.00 0.00 6.86
4929 5140 0.520404 TCACGAGCGACTACAAGGAC 59.480 55.000 0.00 0.00 0.00 3.85
4937 5148 0.109086 CATTGACCTCACGAGCGACT 60.109 55.000 0.00 0.00 0.00 4.18
4953 5164 2.612746 ACGCCCCCACCCTACATT 60.613 61.111 0.00 0.00 0.00 2.71
5002 5213 1.399744 CCTGCATAGTACGCCCCTGA 61.400 60.000 0.00 0.00 0.00 3.86
5057 5270 2.398554 GCATTGCCGTCGTGGTCAT 61.399 57.895 0.00 0.00 41.21 3.06
5058 5271 3.047280 GCATTGCCGTCGTGGTCA 61.047 61.111 0.00 0.00 41.21 4.02
5069 5282 2.789917 CAGAGGAGCGTGCATTGC 59.210 61.111 0.46 0.46 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.