Multiple sequence alignment - TraesCS5A01G180600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G180600 chr5A 100.000 3102 0 0 1 3102 379342373 379345474 0.000000e+00 5729.0
1 TraesCS5A01G180600 chr5D 90.049 2673 162 49 126 2724 287428540 287431182 0.000000e+00 3367.0
2 TraesCS5A01G180600 chr5D 90.395 177 13 3 2808 2983 287431227 287431400 2.410000e-56 230.0
3 TraesCS5A01G180600 chr5B 90.770 1766 96 23 662 2382 326506876 326508619 0.000000e+00 2296.0
4 TraesCS5A01G180600 chr5B 89.679 436 30 7 210 642 326506466 326506889 2.720000e-150 542.0
5 TraesCS5A01G180600 chr5B 84.029 407 30 16 2377 2769 326511053 326511438 2.940000e-95 359.0
6 TraesCS5A01G180600 chr7A 95.868 121 5 0 2982 3102 31590933 31591053 2.440000e-46 196.0
7 TraesCS5A01G180600 chr2A 95.082 122 6 0 2981 3102 776155470 776155349 3.160000e-45 193.0
8 TraesCS5A01G180600 chr2A 92.562 121 9 0 2982 3102 31612034 31612154 1.140000e-39 174.0
9 TraesCS5A01G180600 chrUn 93.750 128 6 2 1 127 314146244 314146370 1.140000e-44 191.0
10 TraesCS5A01G180600 chr4A 93.548 124 8 0 2978 3101 582487378 582487501 5.280000e-43 185.0
11 TraesCS5A01G180600 chr4A 91.129 124 10 1 2979 3102 599785993 599786115 1.910000e-37 167.0
12 TraesCS5A01G180600 chr1A 92.913 127 9 0 2976 3102 497484330 497484204 5.280000e-43 185.0
13 TraesCS5A01G180600 chr1A 93.443 122 8 0 2981 3102 551881352 551881231 6.830000e-42 182.0
14 TraesCS5A01G180600 chr1A 92.188 128 10 0 2975 3102 562782317 562782190 6.830000e-42 182.0
15 TraesCS5A01G180600 chr3A 93.388 121 8 0 2982 3102 24047591 24047471 2.460000e-41 180.0
16 TraesCS5A01G180600 chr6B 85.714 56 8 0 72 127 158740534 158740479 3.340000e-05 60.2
17 TraesCS5A01G180600 chr4B 85.714 56 8 0 72 127 611745711 611745656 3.340000e-05 60.2
18 TraesCS5A01G180600 chr2B 85.714 56 8 0 72 127 44892901 44892956 3.340000e-05 60.2
19 TraesCS5A01G180600 chr1B 85.714 56 8 0 72 127 589186284 589186229 3.340000e-05 60.2
20 TraesCS5A01G180600 chr1D 96.970 33 1 0 95 127 90218776 90218808 4.320000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G180600 chr5A 379342373 379345474 3101 False 5729.000000 5729 100.000000 1 3102 1 chr5A.!!$F1 3101
1 TraesCS5A01G180600 chr5D 287428540 287431400 2860 False 1798.500000 3367 90.222000 126 2983 2 chr5D.!!$F1 2857
2 TraesCS5A01G180600 chr5B 326506466 326511438 4972 False 1065.666667 2296 88.159333 210 2769 3 chr5B.!!$F1 2559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.036010 ACCTTGTTGCATCGCTAGCT 60.036 50.0 13.93 0.0 0.00 3.32 F
101 102 0.099436 CTGGGCTTTGAGTTATGCGC 59.901 55.0 0.00 0.0 38.56 6.09 F
1816 1860 0.321298 AGGTGTGGCCGTGTGAATAC 60.321 55.0 0.00 0.0 43.70 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1781 1825 0.408700 ACCTACCACTCTCCGTTCCT 59.591 55.0 0.0 0.0 0.0 3.36 R
2018 2092 0.890683 AATTTTGGCAGAAGGAGCGG 59.109 50.0 0.0 0.0 0.0 5.52 R
3040 5575 0.034186 TTCAGCCCAGCATAACCCAG 60.034 55.0 0.0 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.888326 CCTTGAAAATCACCCATGGAAA 57.112 40.909 15.22 0.00 0.00 3.13
22 23 4.824289 CCTTGAAAATCACCCATGGAAAG 58.176 43.478 15.22 2.16 0.00 2.62
23 24 3.959535 TGAAAATCACCCATGGAAAGC 57.040 42.857 15.22 0.00 0.00 3.51
24 25 3.237746 TGAAAATCACCCATGGAAAGCA 58.762 40.909 15.22 0.00 0.00 3.91
25 26 3.839490 TGAAAATCACCCATGGAAAGCAT 59.161 39.130 15.22 0.00 0.00 3.79
26 27 4.081531 TGAAAATCACCCATGGAAAGCATC 60.082 41.667 15.22 3.92 0.00 3.91
27 28 2.832643 ATCACCCATGGAAAGCATCA 57.167 45.000 15.22 0.00 0.00 3.07
28 29 1.838112 TCACCCATGGAAAGCATCAC 58.162 50.000 15.22 0.00 0.00 3.06
29 30 1.355381 TCACCCATGGAAAGCATCACT 59.645 47.619 15.22 0.00 0.00 3.41
30 31 2.173519 CACCCATGGAAAGCATCACTT 58.826 47.619 15.22 0.00 41.70 3.16
31 32 2.094390 CACCCATGGAAAGCATCACTTG 60.094 50.000 15.22 0.00 39.09 3.16
32 33 2.173519 CCCATGGAAAGCATCACTTGT 58.826 47.619 15.22 0.00 39.09 3.16
33 34 2.564062 CCCATGGAAAGCATCACTTGTT 59.436 45.455 15.22 0.00 39.09 2.83
34 35 3.581755 CCATGGAAAGCATCACTTGTTG 58.418 45.455 5.56 0.00 39.09 3.33
35 36 2.798976 TGGAAAGCATCACTTGTTGC 57.201 45.000 4.40 4.40 39.09 4.17
36 37 1.001487 TGGAAAGCATCACTTGTTGCG 60.001 47.619 6.63 0.00 43.46 4.85
37 38 1.666888 GGAAAGCATCACTTGTTGCGG 60.667 52.381 6.63 0.00 43.46 5.69
38 39 0.314935 AAAGCATCACTTGTTGCGGG 59.685 50.000 6.63 0.00 43.46 6.13
39 40 1.526575 AAGCATCACTTGTTGCGGGG 61.527 55.000 6.63 0.00 43.46 5.73
40 41 2.268076 GCATCACTTGTTGCGGGGT 61.268 57.895 0.00 0.00 32.04 4.95
41 42 1.580942 CATCACTTGTTGCGGGGTG 59.419 57.895 0.00 0.00 0.00 4.61
42 43 0.888736 CATCACTTGTTGCGGGGTGA 60.889 55.000 0.00 0.00 41.84 4.02
43 44 0.179004 ATCACTTGTTGCGGGGTGAA 60.179 50.000 0.00 0.00 41.14 3.18
44 45 0.394488 TCACTTGTTGCGGGGTGAAA 60.394 50.000 0.00 0.00 36.04 2.69
45 46 0.457851 CACTTGTTGCGGGGTGAAAA 59.542 50.000 0.00 0.00 32.12 2.29
46 47 0.458260 ACTTGTTGCGGGGTGAAAAC 59.542 50.000 0.00 0.00 0.00 2.43
47 48 0.593773 CTTGTTGCGGGGTGAAAACG 60.594 55.000 0.00 0.00 0.00 3.60
48 49 1.313812 TTGTTGCGGGGTGAAAACGT 61.314 50.000 0.00 0.00 0.00 3.99
49 50 1.009335 GTTGCGGGGTGAAAACGTC 60.009 57.895 0.00 0.00 0.00 4.34
50 51 2.188161 TTGCGGGGTGAAAACGTCC 61.188 57.895 0.00 0.00 0.00 4.79
51 52 2.592287 GCGGGGTGAAAACGTCCA 60.592 61.111 0.00 0.00 0.00 4.02
52 53 2.900167 GCGGGGTGAAAACGTCCAC 61.900 63.158 7.03 7.03 0.00 4.02
57 58 1.385528 GGTGAAAACGTCCACCTTGT 58.614 50.000 20.69 0.00 46.94 3.16
58 59 1.746787 GGTGAAAACGTCCACCTTGTT 59.253 47.619 20.69 0.00 46.94 2.83
59 60 2.478879 GGTGAAAACGTCCACCTTGTTG 60.479 50.000 20.69 0.00 46.94 3.33
60 61 1.133407 TGAAAACGTCCACCTTGTTGC 59.867 47.619 0.00 0.00 0.00 4.17
61 62 1.133407 GAAAACGTCCACCTTGTTGCA 59.867 47.619 0.00 0.00 0.00 4.08
62 63 1.398692 AAACGTCCACCTTGTTGCAT 58.601 45.000 0.00 0.00 0.00 3.96
63 64 0.951558 AACGTCCACCTTGTTGCATC 59.048 50.000 0.00 0.00 0.00 3.91
64 65 1.227999 ACGTCCACCTTGTTGCATCG 61.228 55.000 0.00 0.00 0.00 3.84
65 66 1.210155 GTCCACCTTGTTGCATCGC 59.790 57.895 0.00 0.00 0.00 4.58
66 67 1.073025 TCCACCTTGTTGCATCGCT 59.927 52.632 0.00 0.00 0.00 4.93
67 68 0.323302 TCCACCTTGTTGCATCGCTA 59.677 50.000 0.00 0.00 0.00 4.26
68 69 0.729116 CCACCTTGTTGCATCGCTAG 59.271 55.000 0.00 0.00 0.00 3.42
69 70 0.097674 CACCTTGTTGCATCGCTAGC 59.902 55.000 4.06 4.06 0.00 3.42
70 71 0.036010 ACCTTGTTGCATCGCTAGCT 60.036 50.000 13.93 0.00 0.00 3.32
71 72 0.654683 CCTTGTTGCATCGCTAGCTC 59.345 55.000 13.93 0.00 0.00 4.09
72 73 1.649664 CTTGTTGCATCGCTAGCTCT 58.350 50.000 13.93 0.00 0.00 4.09
73 74 1.592081 CTTGTTGCATCGCTAGCTCTC 59.408 52.381 13.93 0.00 0.00 3.20
74 75 0.179100 TGTTGCATCGCTAGCTCTCC 60.179 55.000 13.93 0.00 0.00 3.71
75 76 0.103937 GTTGCATCGCTAGCTCTCCT 59.896 55.000 13.93 0.00 0.00 3.69
76 77 0.826715 TTGCATCGCTAGCTCTCCTT 59.173 50.000 13.93 0.00 0.00 3.36
77 78 0.103755 TGCATCGCTAGCTCTCCTTG 59.896 55.000 13.93 2.50 0.00 3.61
78 79 0.599728 GCATCGCTAGCTCTCCTTGG 60.600 60.000 13.93 0.00 0.00 3.61
79 80 0.749649 CATCGCTAGCTCTCCTTGGT 59.250 55.000 13.93 0.00 0.00 3.67
80 81 1.957177 CATCGCTAGCTCTCCTTGGTA 59.043 52.381 13.93 0.00 0.00 3.25
81 82 2.366640 TCGCTAGCTCTCCTTGGTAT 57.633 50.000 13.93 0.00 0.00 2.73
82 83 2.231529 TCGCTAGCTCTCCTTGGTATC 58.768 52.381 13.93 0.00 0.00 2.24
83 84 2.158593 TCGCTAGCTCTCCTTGGTATCT 60.159 50.000 13.93 0.00 0.00 1.98
84 85 2.030363 CGCTAGCTCTCCTTGGTATCTG 60.030 54.545 13.93 0.00 0.00 2.90
85 86 2.298729 GCTAGCTCTCCTTGGTATCTGG 59.701 54.545 7.70 0.00 0.00 3.86
86 87 1.799933 AGCTCTCCTTGGTATCTGGG 58.200 55.000 0.00 0.00 0.00 4.45
87 88 0.107643 GCTCTCCTTGGTATCTGGGC 59.892 60.000 0.00 0.00 0.00 5.36
88 89 1.799933 CTCTCCTTGGTATCTGGGCT 58.200 55.000 0.00 0.00 0.00 5.19
89 90 2.122768 CTCTCCTTGGTATCTGGGCTT 58.877 52.381 0.00 0.00 0.00 4.35
90 91 2.507471 CTCTCCTTGGTATCTGGGCTTT 59.493 50.000 0.00 0.00 0.00 3.51
91 92 2.239654 TCTCCTTGGTATCTGGGCTTTG 59.760 50.000 0.00 0.00 0.00 2.77
92 93 2.239654 CTCCTTGGTATCTGGGCTTTGA 59.760 50.000 0.00 0.00 0.00 2.69
93 94 2.239654 TCCTTGGTATCTGGGCTTTGAG 59.760 50.000 0.00 0.00 0.00 3.02
94 95 2.025887 CCTTGGTATCTGGGCTTTGAGT 60.026 50.000 0.00 0.00 0.00 3.41
95 96 3.562176 CCTTGGTATCTGGGCTTTGAGTT 60.562 47.826 0.00 0.00 0.00 3.01
96 97 4.324254 CCTTGGTATCTGGGCTTTGAGTTA 60.324 45.833 0.00 0.00 0.00 2.24
97 98 5.440610 CTTGGTATCTGGGCTTTGAGTTAT 58.559 41.667 0.00 0.00 0.00 1.89
98 99 4.780815 TGGTATCTGGGCTTTGAGTTATG 58.219 43.478 0.00 0.00 0.00 1.90
99 100 3.565902 GGTATCTGGGCTTTGAGTTATGC 59.434 47.826 0.00 0.00 0.00 3.14
100 101 1.737838 TCTGGGCTTTGAGTTATGCG 58.262 50.000 0.00 0.00 0.00 4.73
101 102 0.099436 CTGGGCTTTGAGTTATGCGC 59.901 55.000 0.00 0.00 38.56 6.09
102 103 0.607762 TGGGCTTTGAGTTATGCGCA 60.608 50.000 14.96 14.96 44.02 6.09
103 104 0.525761 GGGCTTTGAGTTATGCGCAA 59.474 50.000 17.11 0.11 38.10 4.85
104 105 1.067915 GGGCTTTGAGTTATGCGCAAA 60.068 47.619 17.11 7.62 42.93 3.68
105 106 1.985684 GGCTTTGAGTTATGCGCAAAC 59.014 47.619 17.11 19.46 40.91 2.93
106 107 2.606795 GGCTTTGAGTTATGCGCAAACA 60.607 45.455 26.09 15.72 40.91 2.83
107 108 3.049206 GCTTTGAGTTATGCGCAAACAA 58.951 40.909 26.09 19.29 40.91 2.83
108 109 3.489047 GCTTTGAGTTATGCGCAAACAAA 59.511 39.130 26.09 23.08 40.91 2.83
109 110 4.026145 GCTTTGAGTTATGCGCAAACAAAA 60.026 37.500 26.09 23.14 40.91 2.44
110 111 5.633996 TTTGAGTTATGCGCAAACAAAAG 57.366 34.783 26.09 0.00 40.91 2.27
111 112 4.560136 TGAGTTATGCGCAAACAAAAGA 57.440 36.364 26.09 10.57 0.00 2.52
112 113 4.536065 TGAGTTATGCGCAAACAAAAGAG 58.464 39.130 26.09 0.00 0.00 2.85
113 114 3.900941 AGTTATGCGCAAACAAAAGAGG 58.099 40.909 26.09 0.00 0.00 3.69
114 115 3.568007 AGTTATGCGCAAACAAAAGAGGA 59.432 39.130 26.09 0.00 0.00 3.71
115 116 2.422276 ATGCGCAAACAAAAGAGGAC 57.578 45.000 17.11 0.00 0.00 3.85
116 117 1.388547 TGCGCAAACAAAAGAGGACT 58.611 45.000 8.16 0.00 0.00 3.85
117 118 1.065401 TGCGCAAACAAAAGAGGACTG 59.935 47.619 8.16 0.00 0.00 3.51
118 119 1.600413 GCGCAAACAAAAGAGGACTGG 60.600 52.381 0.30 0.00 0.00 4.00
119 120 1.946768 CGCAAACAAAAGAGGACTGGA 59.053 47.619 0.00 0.00 0.00 3.86
120 121 2.031682 CGCAAACAAAAGAGGACTGGAG 60.032 50.000 0.00 0.00 0.00 3.86
121 122 2.294512 GCAAACAAAAGAGGACTGGAGG 59.705 50.000 0.00 0.00 0.00 4.30
122 123 2.887152 CAAACAAAAGAGGACTGGAGGG 59.113 50.000 0.00 0.00 0.00 4.30
123 124 2.118403 ACAAAAGAGGACTGGAGGGA 57.882 50.000 0.00 0.00 0.00 4.20
124 125 1.981495 ACAAAAGAGGACTGGAGGGAG 59.019 52.381 0.00 0.00 0.00 4.30
161 162 7.340232 ACAAATATAAGAGCCATTCTTCAAGCA 59.660 33.333 0.00 0.00 42.54 3.91
208 209 4.640771 AACATACACCATCTCACCTTGT 57.359 40.909 0.00 0.00 0.00 3.16
222 223 4.952460 TCACCTTGTACACTTGGAAGTAC 58.048 43.478 13.67 0.00 40.68 2.73
247 248 8.721478 ACGTATAATGCAATCAATGACCTAATC 58.279 33.333 0.00 0.00 0.00 1.75
303 305 1.878953 TTGCAGAGAAACCTTCGGAC 58.121 50.000 0.00 0.00 34.02 4.79
392 394 3.458163 GGCCACGGATCCAGACGA 61.458 66.667 13.41 0.00 0.00 4.20
400 402 3.883997 GATCCAGACGAGATCCAGC 57.116 57.895 0.00 0.00 35.16 4.85
552 555 1.668419 AACAGCATAGCGTCCCAATC 58.332 50.000 0.00 0.00 0.00 2.67
581 584 2.976490 GCCCACATGTCAGAGCCCT 61.976 63.158 0.00 0.00 0.00 5.19
708 714 1.289380 GAGAACGAGCCTTCACCGT 59.711 57.895 0.00 0.00 38.24 4.83
714 720 1.001633 ACGAGCCTTCACCGTGTATTT 59.998 47.619 0.00 0.00 35.02 1.40
753 768 1.752833 GGTCACCAACGAGAACCCT 59.247 57.895 0.00 0.00 0.00 4.34
829 844 4.627447 TACACGCGACCGCACGTT 62.627 61.111 15.93 0.00 41.32 3.99
870 885 1.963338 GCTGCGAGCACCACTTCTT 60.963 57.895 0.00 0.00 41.89 2.52
876 891 0.402121 GAGCACCACTTCTTTCCCCT 59.598 55.000 0.00 0.00 0.00 4.79
1051 1070 3.441290 CTCCTCCCGTCTCGCGTT 61.441 66.667 5.77 0.00 39.32 4.84
1052 1071 3.398353 CTCCTCCCGTCTCGCGTTC 62.398 68.421 5.77 0.00 39.32 3.95
1053 1072 4.831307 CCTCCCGTCTCGCGTTCG 62.831 72.222 5.77 9.58 39.32 3.95
1084 1103 3.005050 ACGAGATAACGTGTGAGGTTTCA 59.995 43.478 0.00 0.00 44.84 2.69
1087 1106 2.536761 TAACGTGTGAGGTTTCAGGG 57.463 50.000 0.00 0.00 32.98 4.45
1088 1107 0.818040 AACGTGTGAGGTTTCAGGGC 60.818 55.000 0.00 0.00 32.98 5.19
1089 1108 1.227823 CGTGTGAGGTTTCAGGGCA 60.228 57.895 0.00 0.00 32.98 5.36
1090 1109 1.230635 CGTGTGAGGTTTCAGGGCAG 61.231 60.000 0.00 0.00 32.98 4.85
1301 1345 2.107141 CGCGGGAAGGAGGTCATC 59.893 66.667 0.00 0.00 0.00 2.92
1334 1378 1.108132 CCACCTACTACTCCTCCGGC 61.108 65.000 0.00 0.00 0.00 6.13
1568 1612 2.285743 GGAGGAGCCAGGTTCCCT 60.286 66.667 18.63 7.39 33.27 4.20
1760 1804 4.598894 CTCCGCATCCTGCCCTCG 62.599 72.222 0.00 0.00 41.12 4.63
1763 1807 4.598894 CGCATCCTGCCCTCGGAG 62.599 72.222 0.00 0.00 41.12 4.63
1764 1808 4.925861 GCATCCTGCCCTCGGAGC 62.926 72.222 0.00 0.00 37.42 4.70
1815 1859 1.066716 GTAGGTGTGGCCGTGTGAATA 60.067 52.381 0.00 0.00 43.70 1.75
1816 1860 0.321298 AGGTGTGGCCGTGTGAATAC 60.321 55.000 0.00 0.00 43.70 1.89
1818 1862 2.030401 TGTGGCCGTGTGAATACGC 61.030 57.895 0.00 0.00 42.44 4.42
1819 1863 1.740296 GTGGCCGTGTGAATACGCT 60.740 57.895 0.00 0.00 42.44 5.07
1821 1865 1.295357 TGGCCGTGTGAATACGCTTG 61.295 55.000 0.00 0.00 42.44 4.01
1944 2018 0.392998 TCTGGAAAGCAAGATCGGCC 60.393 55.000 8.53 0.00 0.00 6.13
1971 2045 0.389817 TGCAGTTGGGTCGATCTTCG 60.390 55.000 0.00 0.00 42.10 3.79
2007 2081 1.710013 TTGAGACGGAAATGCTCGAC 58.290 50.000 0.00 0.00 0.00 4.20
2048 2122 2.411904 TGCCAAAATTTCCAATGTCGC 58.588 42.857 0.00 0.00 0.00 5.19
2057 2131 2.459060 TCCAATGTCGCGGAAAGTTA 57.541 45.000 6.13 0.00 0.00 2.24
2074 2148 7.118680 CGGAAAGTTATTACTGTTGCTCCTTTA 59.881 37.037 0.00 0.00 34.01 1.85
2082 2156 1.349688 TGTTGCTCCTTTACGGTGGAT 59.650 47.619 0.00 0.00 0.00 3.41
2090 2165 4.773013 TCCTTTACGGTGGATTTATGTCC 58.227 43.478 0.00 0.00 38.81 4.02
2119 2194 8.921670 GTTAATAAAACCATGTTGTCCATTGAC 58.078 33.333 0.00 0.00 42.12 3.18
2144 2219 7.334671 ACCGATCTCCTTTTACATTTCTCTTTC 59.665 37.037 0.00 0.00 0.00 2.62
2167 2242 1.876799 TGGCGATTTGGTTGTGTACAG 59.123 47.619 0.00 0.00 0.00 2.74
2183 2261 7.446001 TGTGTACAGTGAAAATGAATGCATA 57.554 32.000 0.00 0.00 34.17 3.14
2184 2262 7.304735 TGTGTACAGTGAAAATGAATGCATAC 58.695 34.615 0.00 0.00 34.17 2.39
2185 2263 7.040823 TGTGTACAGTGAAAATGAATGCATACA 60.041 33.333 0.00 0.00 34.17 2.29
2186 2264 7.970061 GTGTACAGTGAAAATGAATGCATACAT 59.030 33.333 0.00 0.00 34.17 2.29
2190 2268 7.329962 ACAGTGAAAATGAATGCATACATTGTG 59.670 33.333 0.00 0.78 46.59 3.33
2230 2309 6.578944 TGGTATTATGTGTTGATAGACGCTT 58.421 36.000 0.00 0.00 0.00 4.68
2349 2429 1.573108 TCCTAGCAGTTTCTCCAGGG 58.427 55.000 0.00 0.00 0.00 4.45
2375 2455 2.359107 CTCGCAGGCTGGAGCAAA 60.359 61.111 17.64 0.00 44.36 3.68
2394 4913 5.105146 AGCAAATCTAAGACTCCACGAGAAT 60.105 40.000 0.00 0.00 33.32 2.40
2412 4931 1.919600 ATCCAAGTGGCTCCCAGCTC 61.920 60.000 0.00 0.00 41.99 4.09
2418 4937 4.247380 GGCTCCCAGCTCATCCGG 62.247 72.222 0.00 0.00 41.99 5.14
2439 4958 2.602217 GGGATGCAAATTACGCGCTTAG 60.602 50.000 5.73 0.00 0.00 2.18
2461 4980 0.601046 CAGAGCAGGCAGTTTCGACA 60.601 55.000 0.00 0.00 0.00 4.35
2462 4981 0.320247 AGAGCAGGCAGTTTCGACAG 60.320 55.000 0.00 0.00 0.00 3.51
2465 4984 0.235926 GCAGGCAGTTTCGACAGTTC 59.764 55.000 0.00 0.00 0.00 3.01
2473 4992 3.621268 CAGTTTCGACAGTTCAACCTTGA 59.379 43.478 0.00 0.00 34.92 3.02
2503 5025 3.509575 GGGTTCATTGACCACATTAAGCA 59.490 43.478 7.34 0.00 41.65 3.91
2505 5027 5.343249 GGTTCATTGACCACATTAAGCATC 58.657 41.667 0.00 0.00 39.57 3.91
2508 5030 6.198650 TCATTGACCACATTAAGCATCAAG 57.801 37.500 0.00 0.00 30.20 3.02
2509 5031 5.945191 TCATTGACCACATTAAGCATCAAGA 59.055 36.000 0.00 0.00 30.20 3.02
2510 5032 5.627499 TTGACCACATTAAGCATCAAGAC 57.373 39.130 0.00 0.00 0.00 3.01
2511 5033 4.650734 TGACCACATTAAGCATCAAGACA 58.349 39.130 0.00 0.00 0.00 3.41
2512 5034 4.455533 TGACCACATTAAGCATCAAGACAC 59.544 41.667 0.00 0.00 0.00 3.67
2513 5035 3.758554 ACCACATTAAGCATCAAGACACC 59.241 43.478 0.00 0.00 0.00 4.16
2514 5036 3.758023 CCACATTAAGCATCAAGACACCA 59.242 43.478 0.00 0.00 0.00 4.17
2515 5037 4.218200 CCACATTAAGCATCAAGACACCAA 59.782 41.667 0.00 0.00 0.00 3.67
2516 5038 5.278907 CCACATTAAGCATCAAGACACCAAA 60.279 40.000 0.00 0.00 0.00 3.28
2517 5039 6.392354 CACATTAAGCATCAAGACACCAAAT 58.608 36.000 0.00 0.00 0.00 2.32
2518 5040 6.529125 CACATTAAGCATCAAGACACCAAATC 59.471 38.462 0.00 0.00 0.00 2.17
2519 5041 6.209192 ACATTAAGCATCAAGACACCAAATCA 59.791 34.615 0.00 0.00 0.00 2.57
2520 5042 6.647334 TTAAGCATCAAGACACCAAATCAA 57.353 33.333 0.00 0.00 0.00 2.57
2521 5043 4.778534 AGCATCAAGACACCAAATCAAG 57.221 40.909 0.00 0.00 0.00 3.02
2522 5044 4.147321 AGCATCAAGACACCAAATCAAGT 58.853 39.130 0.00 0.00 0.00 3.16
2523 5045 4.217118 AGCATCAAGACACCAAATCAAGTC 59.783 41.667 0.00 0.00 0.00 3.01
2524 5046 4.715896 CATCAAGACACCAAATCAAGTCG 58.284 43.478 0.00 0.00 36.18 4.18
2525 5047 4.066646 TCAAGACACCAAATCAAGTCGA 57.933 40.909 0.00 0.00 36.18 4.20
2526 5048 4.641396 TCAAGACACCAAATCAAGTCGAT 58.359 39.130 0.00 0.00 36.18 3.59
2527 5049 4.452114 TCAAGACACCAAATCAAGTCGATG 59.548 41.667 0.00 0.00 36.18 3.84
2621 5151 1.755395 CCATCATGGGCACACAGGG 60.755 63.158 0.00 0.00 32.67 4.45
2638 5168 0.173708 GGGCACGTCCACAAACAAAA 59.826 50.000 6.41 0.00 36.21 2.44
2650 5180 3.030291 ACAAACAAAATCCCTGTCAGCA 58.970 40.909 0.00 0.00 0.00 4.41
2679 5209 3.670625 TCGTCAAGTCCATTAAACTGGG 58.329 45.455 0.00 0.00 36.89 4.45
2681 5211 2.492088 GTCAAGTCCATTAAACTGGGCC 59.508 50.000 0.00 0.00 42.11 5.80
2687 5217 2.241176 TCCATTAAACTGGGCCTTCGAT 59.759 45.455 4.53 0.00 36.89 3.59
2724 5254 4.582869 TCCAATCAACTCTGTCCATCAAG 58.417 43.478 0.00 0.00 0.00 3.02
2757 5291 0.028902 GACGCACCGCTTCAGTTTTT 59.971 50.000 0.00 0.00 0.00 1.94
2758 5292 1.262151 GACGCACCGCTTCAGTTTTTA 59.738 47.619 0.00 0.00 0.00 1.52
2772 5306 8.064222 GCTTCAGTTTTTATTTTGGCTTTTCTC 58.936 33.333 0.00 0.00 0.00 2.87
2777 5311 9.836864 AGTTTTTATTTTGGCTTTTCTCAGAAT 57.163 25.926 0.00 0.00 0.00 2.40
2785 5319 8.641498 TTTGGCTTTTCTCAGAATAAGAAGAT 57.359 30.769 11.39 0.00 34.42 2.40
2786 5320 8.641498 TTGGCTTTTCTCAGAATAAGAAGATT 57.359 30.769 11.39 0.00 34.42 2.40
2788 5322 8.734386 TGGCTTTTCTCAGAATAAGAAGATTTC 58.266 33.333 11.39 0.00 34.42 2.17
2790 5324 7.907563 GCTTTTCTCAGAATAAGAAGATTTCGG 59.092 37.037 11.39 0.00 34.42 4.30
2791 5325 6.910536 TTCTCAGAATAAGAAGATTTCGGC 57.089 37.500 0.00 0.00 34.02 5.54
2793 5327 6.276847 TCTCAGAATAAGAAGATTTCGGCTC 58.723 40.000 0.00 0.00 34.02 4.70
2795 5329 6.644347 TCAGAATAAGAAGATTTCGGCTCTT 58.356 36.000 0.00 0.00 35.69 2.85
2796 5330 7.106239 TCAGAATAAGAAGATTTCGGCTCTTT 58.894 34.615 0.00 0.00 33.18 2.52
2797 5331 7.607991 TCAGAATAAGAAGATTTCGGCTCTTTT 59.392 33.333 0.00 0.00 33.18 2.27
2798 5332 8.239998 CAGAATAAGAAGATTTCGGCTCTTTTT 58.760 33.333 0.00 0.00 33.18 1.94
2822 5356 1.937546 GAGTGGCCGGCTCCATTTTG 61.938 60.000 28.56 0.00 38.57 2.44
2858 5392 4.891727 AGTCGCCGGCGCCATAAG 62.892 66.667 42.78 16.88 39.59 1.73
2877 5412 0.981277 GCTGGGGGCTAGTTGTAGGA 60.981 60.000 0.00 0.00 38.06 2.94
2889 5424 3.898482 AGTTGTAGGAAGCCACTTGTTT 58.102 40.909 0.00 0.00 0.00 2.83
2890 5425 5.043737 AGTTGTAGGAAGCCACTTGTTTA 57.956 39.130 0.00 0.00 0.00 2.01
2900 5435 5.041191 AGCCACTTGTTTATAGGGAGATG 57.959 43.478 0.00 0.00 0.00 2.90
2911 5446 9.974980 TGTTTATAGGGAGATGAAAACAAAAAC 57.025 29.630 0.00 0.00 34.80 2.43
2952 5487 0.677288 TTCGATGAACCTCGTGTGGT 59.323 50.000 0.00 0.00 43.11 4.16
2960 5495 1.578583 ACCTCGTGTGGTTTTTCTCG 58.421 50.000 0.00 0.00 36.89 4.04
2962 5497 1.578583 CTCGTGTGGTTTTTCTCGGT 58.421 50.000 0.00 0.00 0.00 4.69
2983 5518 1.270518 CGGAGAGGTAATCCCATGCAG 60.271 57.143 0.00 0.00 32.86 4.41
2984 5519 1.771255 GGAGAGGTAATCCCATGCAGT 59.229 52.381 0.00 0.00 34.66 4.40
2985 5520 2.972713 GGAGAGGTAATCCCATGCAGTA 59.027 50.000 0.00 0.00 34.66 2.74
2986 5521 3.007398 GGAGAGGTAATCCCATGCAGTAG 59.993 52.174 0.00 0.00 34.66 2.57
2987 5522 2.370189 AGAGGTAATCCCATGCAGTAGC 59.630 50.000 0.00 0.00 37.11 3.58
2988 5523 1.070758 AGGTAATCCCATGCAGTAGCG 59.929 52.381 0.00 0.00 38.83 4.26
2989 5524 1.070134 GGTAATCCCATGCAGTAGCGA 59.930 52.381 0.00 0.00 46.23 4.93
2990 5525 2.484770 GGTAATCCCATGCAGTAGCGAA 60.485 50.000 0.00 0.00 46.23 4.70
2991 5526 2.645838 AATCCCATGCAGTAGCGAAT 57.354 45.000 0.00 0.00 46.23 3.34
2992 5527 2.175878 ATCCCATGCAGTAGCGAATC 57.824 50.000 0.00 0.00 46.23 2.52
2993 5528 1.123077 TCCCATGCAGTAGCGAATCT 58.877 50.000 0.00 0.00 46.23 2.40
2994 5529 2.316108 TCCCATGCAGTAGCGAATCTA 58.684 47.619 0.00 0.00 46.23 1.98
2995 5530 2.297315 TCCCATGCAGTAGCGAATCTAG 59.703 50.000 0.00 0.00 46.23 2.43
2996 5531 2.611473 CCCATGCAGTAGCGAATCTAGG 60.611 54.545 0.00 0.00 46.23 3.02
2997 5532 2.297315 CCATGCAGTAGCGAATCTAGGA 59.703 50.000 0.00 0.00 46.23 2.94
2998 5533 3.056250 CCATGCAGTAGCGAATCTAGGAT 60.056 47.826 0.00 0.00 46.23 3.24
2999 5534 3.650070 TGCAGTAGCGAATCTAGGATG 57.350 47.619 0.00 0.00 46.23 3.51
3000 5535 3.222603 TGCAGTAGCGAATCTAGGATGA 58.777 45.455 0.00 0.00 46.23 2.92
3001 5536 3.636764 TGCAGTAGCGAATCTAGGATGAA 59.363 43.478 0.00 0.00 46.23 2.57
3002 5537 4.281941 TGCAGTAGCGAATCTAGGATGAAT 59.718 41.667 0.00 0.00 46.23 2.57
3003 5538 5.221521 TGCAGTAGCGAATCTAGGATGAATT 60.222 40.000 0.00 0.00 46.23 2.17
3004 5539 5.698545 GCAGTAGCGAATCTAGGATGAATTT 59.301 40.000 0.00 0.00 0.00 1.82
3005 5540 6.347240 GCAGTAGCGAATCTAGGATGAATTTG 60.347 42.308 0.00 0.00 0.00 2.32
3006 5541 6.925718 CAGTAGCGAATCTAGGATGAATTTGA 59.074 38.462 0.00 0.00 0.00 2.69
3007 5542 7.439356 CAGTAGCGAATCTAGGATGAATTTGAA 59.561 37.037 0.00 0.00 0.00 2.69
3008 5543 6.857777 AGCGAATCTAGGATGAATTTGAAG 57.142 37.500 0.00 0.00 0.00 3.02
3009 5544 5.762218 AGCGAATCTAGGATGAATTTGAAGG 59.238 40.000 0.00 0.00 0.00 3.46
3010 5545 5.049129 GCGAATCTAGGATGAATTTGAAGGG 60.049 44.000 0.00 0.00 0.00 3.95
3011 5546 5.049129 CGAATCTAGGATGAATTTGAAGGGC 60.049 44.000 0.00 0.00 0.00 5.19
3012 5547 4.860802 TCTAGGATGAATTTGAAGGGCA 57.139 40.909 0.00 0.00 0.00 5.36
3013 5548 4.785301 TCTAGGATGAATTTGAAGGGCAG 58.215 43.478 0.00 0.00 0.00 4.85
3014 5549 2.743553 AGGATGAATTTGAAGGGCAGG 58.256 47.619 0.00 0.00 0.00 4.85
3015 5550 2.043526 AGGATGAATTTGAAGGGCAGGT 59.956 45.455 0.00 0.00 0.00 4.00
3016 5551 2.833943 GGATGAATTTGAAGGGCAGGTT 59.166 45.455 0.00 0.00 0.00 3.50
3017 5552 3.118992 GGATGAATTTGAAGGGCAGGTTC 60.119 47.826 0.00 0.00 0.00 3.62
3018 5553 2.956132 TGAATTTGAAGGGCAGGTTCA 58.044 42.857 0.00 0.00 32.68 3.18
3019 5554 3.303938 TGAATTTGAAGGGCAGGTTCAA 58.696 40.909 5.18 5.18 41.16 2.69
3020 5555 3.069443 TGAATTTGAAGGGCAGGTTCAAC 59.931 43.478 8.03 0.00 42.27 3.18
3021 5556 2.452600 TTTGAAGGGCAGGTTCAACT 57.547 45.000 8.03 0.00 42.27 3.16
3022 5557 2.452600 TTGAAGGGCAGGTTCAACTT 57.547 45.000 5.18 0.00 38.66 2.66
3023 5558 1.981256 TGAAGGGCAGGTTCAACTTC 58.019 50.000 0.00 0.00 38.36 3.01
3024 5559 1.214175 TGAAGGGCAGGTTCAACTTCA 59.786 47.619 0.00 0.00 43.54 3.02
3025 5560 2.306847 GAAGGGCAGGTTCAACTTCAA 58.693 47.619 0.00 0.00 37.92 2.69
3026 5561 2.683211 AGGGCAGGTTCAACTTCAAT 57.317 45.000 0.00 0.00 0.00 2.57
3027 5562 3.806949 AGGGCAGGTTCAACTTCAATA 57.193 42.857 0.00 0.00 0.00 1.90
3028 5563 3.421844 AGGGCAGGTTCAACTTCAATAC 58.578 45.455 0.00 0.00 0.00 1.89
3029 5564 3.153919 GGGCAGGTTCAACTTCAATACA 58.846 45.455 0.00 0.00 0.00 2.29
3030 5565 3.057526 GGGCAGGTTCAACTTCAATACAC 60.058 47.826 0.00 0.00 0.00 2.90
3031 5566 3.568007 GGCAGGTTCAACTTCAATACACA 59.432 43.478 0.00 0.00 0.00 3.72
3032 5567 4.320494 GGCAGGTTCAACTTCAATACACAG 60.320 45.833 0.00 0.00 0.00 3.66
3033 5568 4.515191 GCAGGTTCAACTTCAATACACAGA 59.485 41.667 0.00 0.00 0.00 3.41
3034 5569 5.560953 GCAGGTTCAACTTCAATACACAGAC 60.561 44.000 0.00 0.00 0.00 3.51
3035 5570 5.760253 CAGGTTCAACTTCAATACACAGACT 59.240 40.000 0.00 0.00 0.00 3.24
3036 5571 5.760253 AGGTTCAACTTCAATACACAGACTG 59.240 40.000 0.00 0.00 0.00 3.51
3037 5572 5.758296 GGTTCAACTTCAATACACAGACTGA 59.242 40.000 10.08 0.00 0.00 3.41
3038 5573 6.260050 GGTTCAACTTCAATACACAGACTGAA 59.740 38.462 10.08 0.00 0.00 3.02
3039 5574 7.201696 GGTTCAACTTCAATACACAGACTGAAA 60.202 37.037 10.08 0.00 0.00 2.69
3040 5575 7.246674 TCAACTTCAATACACAGACTGAAAC 57.753 36.000 10.08 0.00 0.00 2.78
3041 5576 7.047891 TCAACTTCAATACACAGACTGAAACT 58.952 34.615 10.08 0.00 0.00 2.66
3042 5577 6.851222 ACTTCAATACACAGACTGAAACTG 57.149 37.500 10.08 0.00 40.68 3.16
3043 5578 5.760253 ACTTCAATACACAGACTGAAACTGG 59.240 40.000 10.08 0.00 39.38 4.00
3044 5579 4.641396 TCAATACACAGACTGAAACTGGG 58.359 43.478 10.08 0.00 43.49 4.45
3050 5585 3.189287 CACAGACTGAAACTGGGTTATGC 59.811 47.826 10.08 0.00 39.38 3.14
3051 5586 3.073062 ACAGACTGAAACTGGGTTATGCT 59.927 43.478 10.08 0.00 39.38 3.79
3052 5587 3.438087 CAGACTGAAACTGGGTTATGCTG 59.562 47.826 0.00 0.00 0.00 4.41
3053 5588 2.749621 GACTGAAACTGGGTTATGCTGG 59.250 50.000 0.00 0.00 0.00 4.85
3054 5589 2.094675 CTGAAACTGGGTTATGCTGGG 58.905 52.381 0.00 0.00 0.00 4.45
3055 5590 0.817654 GAAACTGGGTTATGCTGGGC 59.182 55.000 0.00 0.00 0.00 5.36
3056 5591 0.409484 AAACTGGGTTATGCTGGGCT 59.591 50.000 0.00 0.00 0.00 5.19
3057 5592 0.323725 AACTGGGTTATGCTGGGCTG 60.324 55.000 0.00 0.00 0.00 4.85
3058 5593 1.207488 ACTGGGTTATGCTGGGCTGA 61.207 55.000 0.00 0.00 0.00 4.26
3059 5594 0.034186 CTGGGTTATGCTGGGCTGAA 60.034 55.000 0.00 0.00 0.00 3.02
3060 5595 0.407528 TGGGTTATGCTGGGCTGAAA 59.592 50.000 0.00 0.00 0.00 2.69
3061 5596 0.817654 GGGTTATGCTGGGCTGAAAC 59.182 55.000 0.00 0.00 0.00 2.78
3062 5597 1.616994 GGGTTATGCTGGGCTGAAACT 60.617 52.381 0.00 0.00 0.00 2.66
3063 5598 2.356741 GGGTTATGCTGGGCTGAAACTA 60.357 50.000 0.00 0.00 0.00 2.24
3064 5599 2.945668 GGTTATGCTGGGCTGAAACTAG 59.054 50.000 0.00 0.00 0.00 2.57
3065 5600 2.945668 GTTATGCTGGGCTGAAACTAGG 59.054 50.000 0.00 0.00 0.00 3.02
3066 5601 0.394899 ATGCTGGGCTGAAACTAGGC 60.395 55.000 0.00 0.00 42.08 3.93
3067 5602 1.301293 GCTGGGCTGAAACTAGGCT 59.699 57.895 0.00 0.00 42.40 4.58
3068 5603 1.028868 GCTGGGCTGAAACTAGGCTG 61.029 60.000 0.00 0.00 42.40 4.85
3069 5604 0.615331 CTGGGCTGAAACTAGGCTGA 59.385 55.000 0.00 0.00 42.40 4.26
3070 5605 0.615331 TGGGCTGAAACTAGGCTGAG 59.385 55.000 0.00 0.00 42.40 3.35
3071 5606 0.905357 GGGCTGAAACTAGGCTGAGA 59.095 55.000 0.00 0.00 42.40 3.27
3072 5607 1.488393 GGGCTGAAACTAGGCTGAGAT 59.512 52.381 0.00 0.00 42.40 2.75
3073 5608 2.559440 GGCTGAAACTAGGCTGAGATG 58.441 52.381 0.00 0.00 39.89 2.90
3074 5609 2.559440 GCTGAAACTAGGCTGAGATGG 58.441 52.381 0.00 0.00 0.00 3.51
3075 5610 2.744494 GCTGAAACTAGGCTGAGATGGG 60.744 54.545 0.00 0.00 0.00 4.00
3076 5611 1.210478 TGAAACTAGGCTGAGATGGGC 59.790 52.381 0.00 0.00 0.00 5.36
3077 5612 1.488393 GAAACTAGGCTGAGATGGGCT 59.512 52.381 0.00 0.00 42.25 5.19
3078 5613 0.835941 AACTAGGCTGAGATGGGCTG 59.164 55.000 0.00 0.00 39.87 4.85
3079 5614 1.053264 ACTAGGCTGAGATGGGCTGG 61.053 60.000 0.00 0.00 41.97 4.85
3080 5615 1.766625 CTAGGCTGAGATGGGCTGGG 61.767 65.000 0.00 0.00 39.87 4.45
3081 5616 2.256156 TAGGCTGAGATGGGCTGGGA 62.256 60.000 0.00 0.00 39.87 4.37
3082 5617 2.459086 GGCTGAGATGGGCTGGGAT 61.459 63.158 0.00 0.00 0.00 3.85
3083 5618 1.130054 GGCTGAGATGGGCTGGGATA 61.130 60.000 0.00 0.00 0.00 2.59
3084 5619 0.324285 GCTGAGATGGGCTGGGATAG 59.676 60.000 0.00 0.00 0.00 2.08
3085 5620 0.982704 CTGAGATGGGCTGGGATAGG 59.017 60.000 0.00 0.00 0.00 2.57
3099 5634 7.767250 GCTGGGATAGGCTAGATTTTAATTT 57.233 36.000 0.00 0.00 0.00 1.82
3100 5635 7.821652 GCTGGGATAGGCTAGATTTTAATTTC 58.178 38.462 0.00 0.00 0.00 2.17
3101 5636 7.361286 GCTGGGATAGGCTAGATTTTAATTTCG 60.361 40.741 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.824289 CTTTCCATGGGTGATTTTCAAGG 58.176 43.478 13.02 0.00 0.00 3.61
2 3 3.645212 TGCTTTCCATGGGTGATTTTCAA 59.355 39.130 13.02 0.00 0.00 2.69
3 4 3.237746 TGCTTTCCATGGGTGATTTTCA 58.762 40.909 13.02 0.00 0.00 2.69
4 5 3.959535 TGCTTTCCATGGGTGATTTTC 57.040 42.857 13.02 0.00 0.00 2.29
5 6 3.839490 TGATGCTTTCCATGGGTGATTTT 59.161 39.130 13.02 0.00 33.29 1.82
6 7 3.196254 GTGATGCTTTCCATGGGTGATTT 59.804 43.478 13.02 0.00 33.29 2.17
9 10 1.355381 AGTGATGCTTTCCATGGGTGA 59.645 47.619 13.02 0.00 33.29 4.02
10 11 1.843368 AGTGATGCTTTCCATGGGTG 58.157 50.000 13.02 3.52 33.29 4.61
11 12 2.173519 CAAGTGATGCTTTCCATGGGT 58.826 47.619 13.02 0.00 34.69 4.51
12 13 2.173519 ACAAGTGATGCTTTCCATGGG 58.826 47.619 13.02 0.00 34.69 4.00
14 15 2.991190 GCAACAAGTGATGCTTTCCATG 59.009 45.455 6.32 0.00 40.18 3.66
15 16 2.352030 CGCAACAAGTGATGCTTTCCAT 60.352 45.455 11.17 0.00 41.00 3.41
16 17 1.001487 CGCAACAAGTGATGCTTTCCA 60.001 47.619 11.17 0.00 41.00 3.53
17 18 1.666888 CCGCAACAAGTGATGCTTTCC 60.667 52.381 11.17 0.00 41.00 3.13
18 19 1.666888 CCCGCAACAAGTGATGCTTTC 60.667 52.381 11.17 0.00 41.00 2.62
19 20 0.314935 CCCGCAACAAGTGATGCTTT 59.685 50.000 11.17 0.00 41.00 3.51
20 21 1.526575 CCCCGCAACAAGTGATGCTT 61.527 55.000 11.17 0.00 41.00 3.91
21 22 1.973281 CCCCGCAACAAGTGATGCT 60.973 57.895 11.17 0.00 41.00 3.79
22 23 2.268076 ACCCCGCAACAAGTGATGC 61.268 57.895 3.63 3.63 39.97 3.91
23 24 0.888736 TCACCCCGCAACAAGTGATG 60.889 55.000 0.00 0.00 34.44 3.07
24 25 0.179004 TTCACCCCGCAACAAGTGAT 60.179 50.000 0.00 0.00 38.91 3.06
25 26 0.394488 TTTCACCCCGCAACAAGTGA 60.394 50.000 0.00 0.00 37.46 3.41
26 27 0.457851 TTTTCACCCCGCAACAAGTG 59.542 50.000 0.00 0.00 0.00 3.16
27 28 0.458260 GTTTTCACCCCGCAACAAGT 59.542 50.000 0.00 0.00 0.00 3.16
28 29 0.593773 CGTTTTCACCCCGCAACAAG 60.594 55.000 0.00 0.00 0.00 3.16
29 30 1.313812 ACGTTTTCACCCCGCAACAA 61.314 50.000 0.00 0.00 0.00 2.83
30 31 1.716826 GACGTTTTCACCCCGCAACA 61.717 55.000 0.00 0.00 0.00 3.33
31 32 1.009335 GACGTTTTCACCCCGCAAC 60.009 57.895 0.00 0.00 0.00 4.17
32 33 2.188161 GGACGTTTTCACCCCGCAA 61.188 57.895 0.00 0.00 0.00 4.85
33 34 2.592287 GGACGTTTTCACCCCGCA 60.592 61.111 0.00 0.00 0.00 5.69
34 35 2.592287 TGGACGTTTTCACCCCGC 60.592 61.111 0.00 0.00 0.00 6.13
35 36 2.255881 GGTGGACGTTTTCACCCCG 61.256 63.158 19.49 0.00 45.60 5.73
36 37 3.754068 GGTGGACGTTTTCACCCC 58.246 61.111 19.49 3.30 45.60 4.95
39 40 2.792749 CAACAAGGTGGACGTTTTCAC 58.207 47.619 8.49 8.49 0.00 3.18
40 41 1.133407 GCAACAAGGTGGACGTTTTCA 59.867 47.619 0.00 0.00 0.00 2.69
41 42 1.133407 TGCAACAAGGTGGACGTTTTC 59.867 47.619 0.00 0.00 0.00 2.29
42 43 1.178276 TGCAACAAGGTGGACGTTTT 58.822 45.000 0.00 0.00 0.00 2.43
43 44 1.336755 GATGCAACAAGGTGGACGTTT 59.663 47.619 0.00 0.00 0.00 3.60
44 45 0.951558 GATGCAACAAGGTGGACGTT 59.048 50.000 0.00 0.00 0.00 3.99
45 46 1.227999 CGATGCAACAAGGTGGACGT 61.228 55.000 0.00 0.00 0.00 4.34
46 47 1.497278 CGATGCAACAAGGTGGACG 59.503 57.895 0.00 0.00 0.00 4.79
47 48 1.210155 GCGATGCAACAAGGTGGAC 59.790 57.895 0.00 0.00 0.00 4.02
48 49 0.323302 TAGCGATGCAACAAGGTGGA 59.677 50.000 0.00 0.00 0.00 4.02
49 50 0.729116 CTAGCGATGCAACAAGGTGG 59.271 55.000 0.00 0.00 0.00 4.61
50 51 0.097674 GCTAGCGATGCAACAAGGTG 59.902 55.000 0.00 0.00 0.00 4.00
51 52 0.036010 AGCTAGCGATGCAACAAGGT 60.036 50.000 9.55 0.00 0.00 3.50
52 53 0.654683 GAGCTAGCGATGCAACAAGG 59.345 55.000 9.55 0.00 0.00 3.61
53 54 1.592081 GAGAGCTAGCGATGCAACAAG 59.408 52.381 9.55 0.00 0.00 3.16
54 55 1.645034 GAGAGCTAGCGATGCAACAA 58.355 50.000 9.55 0.00 0.00 2.83
55 56 0.179100 GGAGAGCTAGCGATGCAACA 60.179 55.000 9.55 0.00 0.00 3.33
56 57 0.103937 AGGAGAGCTAGCGATGCAAC 59.896 55.000 9.55 0.00 0.00 4.17
57 58 0.826715 AAGGAGAGCTAGCGATGCAA 59.173 50.000 9.55 0.00 0.00 4.08
58 59 0.103755 CAAGGAGAGCTAGCGATGCA 59.896 55.000 9.55 0.00 0.00 3.96
59 60 0.599728 CCAAGGAGAGCTAGCGATGC 60.600 60.000 9.55 7.35 0.00 3.91
60 61 0.749649 ACCAAGGAGAGCTAGCGATG 59.250 55.000 9.55 3.55 0.00 3.84
61 62 2.366640 TACCAAGGAGAGCTAGCGAT 57.633 50.000 9.55 1.05 0.00 4.58
62 63 2.158593 AGATACCAAGGAGAGCTAGCGA 60.159 50.000 9.55 0.00 0.00 4.93
63 64 2.030363 CAGATACCAAGGAGAGCTAGCG 60.030 54.545 9.55 0.00 0.00 4.26
64 65 2.298729 CCAGATACCAAGGAGAGCTAGC 59.701 54.545 6.62 6.62 0.00 3.42
65 66 2.896685 CCCAGATACCAAGGAGAGCTAG 59.103 54.545 0.00 0.00 0.00 3.42
66 67 2.964209 CCCAGATACCAAGGAGAGCTA 58.036 52.381 0.00 0.00 0.00 3.32
67 68 1.799933 CCCAGATACCAAGGAGAGCT 58.200 55.000 0.00 0.00 0.00 4.09
68 69 0.107643 GCCCAGATACCAAGGAGAGC 59.892 60.000 0.00 0.00 0.00 4.09
69 70 1.799933 AGCCCAGATACCAAGGAGAG 58.200 55.000 0.00 0.00 0.00 3.20
70 71 2.239654 CAAAGCCCAGATACCAAGGAGA 59.760 50.000 0.00 0.00 0.00 3.71
71 72 2.239654 TCAAAGCCCAGATACCAAGGAG 59.760 50.000 0.00 0.00 0.00 3.69
72 73 2.239654 CTCAAAGCCCAGATACCAAGGA 59.760 50.000 0.00 0.00 0.00 3.36
73 74 2.025887 ACTCAAAGCCCAGATACCAAGG 60.026 50.000 0.00 0.00 0.00 3.61
74 75 3.356529 ACTCAAAGCCCAGATACCAAG 57.643 47.619 0.00 0.00 0.00 3.61
75 76 3.806949 AACTCAAAGCCCAGATACCAA 57.193 42.857 0.00 0.00 0.00 3.67
76 77 4.780815 CATAACTCAAAGCCCAGATACCA 58.219 43.478 0.00 0.00 0.00 3.25
77 78 3.565902 GCATAACTCAAAGCCCAGATACC 59.434 47.826 0.00 0.00 0.00 2.73
78 79 3.248602 CGCATAACTCAAAGCCCAGATAC 59.751 47.826 0.00 0.00 0.00 2.24
79 80 3.466836 CGCATAACTCAAAGCCCAGATA 58.533 45.455 0.00 0.00 0.00 1.98
80 81 2.292267 CGCATAACTCAAAGCCCAGAT 58.708 47.619 0.00 0.00 0.00 2.90
81 82 1.737838 CGCATAACTCAAAGCCCAGA 58.262 50.000 0.00 0.00 0.00 3.86
82 83 0.099436 GCGCATAACTCAAAGCCCAG 59.901 55.000 0.30 0.00 0.00 4.45
83 84 0.607762 TGCGCATAACTCAAAGCCCA 60.608 50.000 5.66 0.00 0.00 5.36
84 85 0.525761 TTGCGCATAACTCAAAGCCC 59.474 50.000 12.75 0.00 0.00 5.19
85 86 1.985684 GTTTGCGCATAACTCAAAGCC 59.014 47.619 12.75 0.00 33.79 4.35
86 87 2.660490 TGTTTGCGCATAACTCAAAGC 58.340 42.857 25.12 8.62 33.79 3.51
87 88 5.458452 TCTTTTGTTTGCGCATAACTCAAAG 59.542 36.000 27.23 27.23 33.79 2.77
88 89 5.344066 TCTTTTGTTTGCGCATAACTCAAA 58.656 33.333 25.12 21.88 30.68 2.69
89 90 4.926244 TCTTTTGTTTGCGCATAACTCAA 58.074 34.783 25.12 18.37 0.00 3.02
90 91 4.536065 CTCTTTTGTTTGCGCATAACTCA 58.464 39.130 25.12 15.14 0.00 3.41
91 92 3.914364 CCTCTTTTGTTTGCGCATAACTC 59.086 43.478 25.12 11.74 0.00 3.01
92 93 3.568007 TCCTCTTTTGTTTGCGCATAACT 59.432 39.130 25.12 0.00 0.00 2.24
93 94 3.668656 GTCCTCTTTTGTTTGCGCATAAC 59.331 43.478 12.75 18.43 0.00 1.89
94 95 3.568007 AGTCCTCTTTTGTTTGCGCATAA 59.432 39.130 12.75 5.86 0.00 1.90
95 96 3.058293 CAGTCCTCTTTTGTTTGCGCATA 60.058 43.478 12.75 2.60 0.00 3.14
96 97 1.956477 AGTCCTCTTTTGTTTGCGCAT 59.044 42.857 12.75 0.00 0.00 4.73
97 98 1.065401 CAGTCCTCTTTTGTTTGCGCA 59.935 47.619 5.66 5.66 0.00 6.09
98 99 1.600413 CCAGTCCTCTTTTGTTTGCGC 60.600 52.381 0.00 0.00 0.00 6.09
99 100 1.946768 TCCAGTCCTCTTTTGTTTGCG 59.053 47.619 0.00 0.00 0.00 4.85
100 101 2.294512 CCTCCAGTCCTCTTTTGTTTGC 59.705 50.000 0.00 0.00 0.00 3.68
101 102 2.887152 CCCTCCAGTCCTCTTTTGTTTG 59.113 50.000 0.00 0.00 0.00 2.93
102 103 2.783510 TCCCTCCAGTCCTCTTTTGTTT 59.216 45.455 0.00 0.00 0.00 2.83
103 104 2.373502 CTCCCTCCAGTCCTCTTTTGTT 59.626 50.000 0.00 0.00 0.00 2.83
104 105 1.981495 CTCCCTCCAGTCCTCTTTTGT 59.019 52.381 0.00 0.00 0.00 2.83
105 106 1.981495 ACTCCCTCCAGTCCTCTTTTG 59.019 52.381 0.00 0.00 0.00 2.44
106 107 2.424684 ACTCCCTCCAGTCCTCTTTT 57.575 50.000 0.00 0.00 0.00 2.27
107 108 3.786213 ATACTCCCTCCAGTCCTCTTT 57.214 47.619 0.00 0.00 0.00 2.52
108 109 3.786213 AATACTCCCTCCAGTCCTCTT 57.214 47.619 0.00 0.00 0.00 2.85
109 110 3.786213 AAATACTCCCTCCAGTCCTCT 57.214 47.619 0.00 0.00 0.00 3.69
110 111 4.846168 AAAAATACTCCCTCCAGTCCTC 57.154 45.455 0.00 0.00 0.00 3.71
132 133 8.806429 TGAAGAATGGCTCTTATATTTGTCAA 57.194 30.769 0.00 0.00 44.82 3.18
133 134 8.806429 TTGAAGAATGGCTCTTATATTTGTCA 57.194 30.769 0.00 0.00 44.82 3.58
149 150 5.977725 GTCATGGATTGATGCTTGAAGAATG 59.022 40.000 0.00 0.00 36.54 2.67
161 162 3.267812 ACTCCTTGGTGTCATGGATTGAT 59.732 43.478 0.00 0.00 43.49 2.57
208 209 6.865411 TGCATTATACGTACTTCCAAGTGTA 58.135 36.000 0.00 0.00 40.07 2.90
222 223 8.939929 AGATTAGGTCATTGATTGCATTATACG 58.060 33.333 0.00 0.00 0.00 3.06
303 305 2.918802 TGCTTTGCCTTGGCTGGG 60.919 61.111 13.18 3.98 0.00 4.45
531 534 2.772077 TTGGGACGCTATGCTGTTAA 57.228 45.000 0.00 0.00 0.00 2.01
560 563 1.077212 GCTCTGACATGTGGGCCAT 60.077 57.895 10.70 0.00 0.00 4.40
708 714 1.121378 TCATCGGCGGGGTAAATACA 58.879 50.000 7.21 0.00 0.00 2.29
714 720 2.061578 ACATGTCATCGGCGGGGTA 61.062 57.895 7.21 0.00 0.00 3.69
743 758 1.296715 GGCATGTGAGGGTTCTCGT 59.703 57.895 0.00 0.00 42.79 4.18
753 768 0.253894 CTGGTCTCCATGGCATGTGA 59.746 55.000 24.80 18.83 30.82 3.58
870 885 4.382320 GTGCGGTGCGTAGGGGAA 62.382 66.667 0.00 0.00 0.00 3.97
919 934 0.108019 CCTATTGGTCGGGCCTAACC 59.892 60.000 17.29 17.29 38.35 2.85
967 982 3.377798 AGACGACGCCCTTTTGTTTTTAA 59.622 39.130 0.00 0.00 0.00 1.52
1087 1106 2.279385 CTGCTAGCTCGGCTCTGC 60.279 66.667 17.23 8.68 40.44 4.26
1088 1107 2.279385 GCTGCTAGCTCGGCTCTG 60.279 66.667 17.23 4.94 40.44 3.35
1089 1108 3.535962 GGCTGCTAGCTCGGCTCT 61.536 66.667 17.23 0.00 41.99 4.09
1090 1109 3.162505 ATGGCTGCTAGCTCGGCTC 62.163 63.158 23.80 15.59 41.99 4.70
1094 1138 0.949588 CCATCATGGCTGCTAGCTCG 60.950 60.000 17.23 8.23 41.99 5.03
1301 1345 1.142748 GGTGGAGATGTGCGAGGAG 59.857 63.158 0.00 0.00 0.00 3.69
1578 1622 4.742201 CCTCACCGCCTGGACACG 62.742 72.222 0.00 0.00 39.21 4.49
1628 1672 4.954970 CACCACGCCTGGCCACTT 62.955 66.667 14.12 0.00 42.08 3.16
1748 1792 3.473647 TGCTCCGAGGGCAGGATG 61.474 66.667 0.00 0.00 37.13 3.51
1778 1822 2.094130 CCTACCACTCTCCGTTCCTTTC 60.094 54.545 0.00 0.00 0.00 2.62
1779 1823 1.900486 CCTACCACTCTCCGTTCCTTT 59.100 52.381 0.00 0.00 0.00 3.11
1780 1824 1.203149 ACCTACCACTCTCCGTTCCTT 60.203 52.381 0.00 0.00 0.00 3.36
1781 1825 0.408700 ACCTACCACTCTCCGTTCCT 59.591 55.000 0.00 0.00 0.00 3.36
1818 1862 2.768492 GCATCTCCGCCAAGCCAAG 61.768 63.158 0.00 0.00 0.00 3.61
1819 1863 2.751436 GCATCTCCGCCAAGCCAA 60.751 61.111 0.00 0.00 0.00 4.52
1821 1865 2.955022 ATCAGCATCTCCGCCAAGCC 62.955 60.000 0.00 0.00 0.00 4.35
1971 2045 6.128634 CCGTCTCAAAGAATAGTGGTACAAAC 60.129 42.308 0.00 0.00 44.16 2.93
2018 2092 0.890683 AATTTTGGCAGAAGGAGCGG 59.109 50.000 0.00 0.00 0.00 5.52
2048 2122 4.935808 AGGAGCAACAGTAATAACTTTCCG 59.064 41.667 0.00 0.00 31.97 4.30
2057 2131 4.000988 CACCGTAAAGGAGCAACAGTAAT 58.999 43.478 0.00 0.00 45.00 1.89
2090 2165 9.487790 AATGGACAACATGGTTTTATTAACTTG 57.512 29.630 0.00 0.00 40.44 3.16
2119 2194 7.464710 CGAAAGAGAAATGTAAAAGGAGATCGG 60.465 40.741 0.00 0.00 0.00 4.18
2144 2219 0.030101 ACACAACCAAATCGCCAACG 59.970 50.000 0.00 0.00 42.01 4.10
2167 2242 6.591062 ACCACAATGTATGCATTCATTTTCAC 59.409 34.615 24.07 6.88 42.91 3.18
2183 2261 3.442273 AGTGTTTTGACGAACCACAATGT 59.558 39.130 5.95 0.00 0.00 2.71
2184 2262 4.027572 AGTGTTTTGACGAACCACAATG 57.972 40.909 5.95 0.00 0.00 2.82
2185 2263 4.420168 CAAGTGTTTTGACGAACCACAAT 58.580 39.130 5.95 0.00 0.00 2.71
2186 2264 3.366476 CCAAGTGTTTTGACGAACCACAA 60.366 43.478 5.95 0.00 0.00 3.33
2190 2268 4.823790 ATACCAAGTGTTTTGACGAACC 57.176 40.909 0.00 0.00 0.00 3.62
2230 2309 8.872417 CGTGGTAAACGTGGTAAGTAACCTCA 62.872 46.154 0.00 0.00 45.73 3.86
2361 2441 1.674962 CTTAGATTTGCTCCAGCCTGC 59.325 52.381 0.00 0.00 41.18 4.85
2375 2455 4.537751 TGGATTCTCGTGGAGTCTTAGAT 58.462 43.478 0.00 0.00 32.24 1.98
2394 4913 2.530151 AGCTGGGAGCCACTTGGA 60.530 61.111 0.00 0.00 43.77 3.53
2418 4937 0.100503 AAGCGCGTAATTTGCATCCC 59.899 50.000 8.43 0.00 0.00 3.85
2439 4958 2.282745 AAACTGCCTGCTCTGCCC 60.283 61.111 0.00 0.00 0.00 5.36
2465 4984 3.505680 TGAACCCAATCGATTCAAGGTTG 59.494 43.478 28.51 12.04 37.71 3.77
2473 4992 3.443681 GTGGTCAATGAACCCAATCGATT 59.556 43.478 4.39 4.39 38.65 3.34
2503 5025 4.641396 TCGACTTGATTTGGTGTCTTGAT 58.359 39.130 0.00 0.00 0.00 2.57
2505 5027 4.214119 ACATCGACTTGATTTGGTGTCTTG 59.786 41.667 0.00 0.00 34.13 3.02
2508 5030 3.181530 CGACATCGACTTGATTTGGTGTC 60.182 47.826 0.00 0.00 43.02 3.67
2509 5031 2.736721 CGACATCGACTTGATTTGGTGT 59.263 45.455 0.00 0.00 43.02 4.16
2510 5032 2.993220 TCGACATCGACTTGATTTGGTG 59.007 45.455 0.00 0.00 44.22 4.17
2511 5033 3.313012 TCGACATCGACTTGATTTGGT 57.687 42.857 0.00 0.00 44.22 3.67
2523 5045 1.284982 GGCGGGAATGATCGACATCG 61.285 60.000 0.00 0.00 38.38 3.84
2524 5046 1.284982 CGGCGGGAATGATCGACATC 61.285 60.000 0.00 0.00 38.38 3.06
2525 5047 1.300931 CGGCGGGAATGATCGACAT 60.301 57.895 0.00 0.00 41.45 3.06
2526 5048 2.106131 CGGCGGGAATGATCGACA 59.894 61.111 0.00 0.00 33.34 4.35
2527 5049 3.338676 GCGGCGGGAATGATCGAC 61.339 66.667 9.78 0.00 0.00 4.20
2537 5059 3.564027 GAATTCTCACGCGGCGGG 61.564 66.667 27.37 24.16 0.00 6.13
2538 5060 3.564027 GGAATTCTCACGCGGCGG 61.564 66.667 27.37 15.35 0.00 6.13
2539 5061 1.705337 AATGGAATTCTCACGCGGCG 61.705 55.000 22.36 22.36 0.00 6.46
2621 5151 2.124122 GGATTTTGTTTGTGGACGTGC 58.876 47.619 0.00 0.00 0.00 5.34
2626 5156 3.636300 CTGACAGGGATTTTGTTTGTGGA 59.364 43.478 0.00 0.00 0.00 4.02
2638 5168 2.664402 AGTTGTTTGCTGACAGGGAT 57.336 45.000 4.26 0.00 0.00 3.85
2679 5209 1.004277 CGACGGATGCTATCGAAGGC 61.004 60.000 2.18 6.10 38.10 4.35
2681 5211 0.039978 AGCGACGGATGCTATCGAAG 60.040 55.000 11.12 0.00 41.87 3.79
2687 5217 0.248012 TTGGAAAGCGACGGATGCTA 59.752 50.000 0.00 0.00 43.14 3.49
2750 5284 8.647143 TCTGAGAAAAGCCAAAATAAAAACTG 57.353 30.769 0.00 0.00 0.00 3.16
2758 5292 9.082313 TCTTCTTATTCTGAGAAAAGCCAAAAT 57.918 29.630 0.00 0.00 33.10 1.82
2772 5306 6.917217 AAGAGCCGAAATCTTCTTATTCTG 57.083 37.500 0.00 0.00 31.29 3.02
2798 5332 1.901464 GGAGCCGGCCACTCAAAAA 60.901 57.895 26.15 0.00 35.79 1.94
2799 5333 2.282180 GGAGCCGGCCACTCAAAA 60.282 61.111 26.15 0.00 35.79 2.44
2800 5334 2.424842 AATGGAGCCGGCCACTCAAA 62.425 55.000 26.15 7.04 41.56 2.69
2802 5336 2.424842 AAAATGGAGCCGGCCACTCA 62.425 55.000 26.15 16.73 41.56 3.41
2803 5337 1.678970 AAAATGGAGCCGGCCACTC 60.679 57.895 26.15 14.93 41.56 3.51
2804 5338 1.978617 CAAAATGGAGCCGGCCACT 60.979 57.895 26.15 3.93 41.56 4.00
2805 5339 2.573340 CAAAATGGAGCCGGCCAC 59.427 61.111 26.15 17.58 41.56 5.01
2806 5340 3.381136 GCAAAATGGAGCCGGCCA 61.381 61.111 26.15 16.30 43.23 5.36
2858 5392 0.981277 TCCTACAACTAGCCCCCAGC 60.981 60.000 0.00 0.00 44.25 4.85
2867 5401 4.699925 AACAAGTGGCTTCCTACAACTA 57.300 40.909 0.00 0.00 0.00 2.24
2870 5404 6.177610 CCTATAAACAAGTGGCTTCCTACAA 58.822 40.000 0.00 0.00 0.00 2.41
2871 5405 5.338871 CCCTATAAACAAGTGGCTTCCTACA 60.339 44.000 0.00 0.00 0.00 2.74
2873 5407 5.034200 TCCCTATAAACAAGTGGCTTCCTA 58.966 41.667 0.00 0.00 0.00 2.94
2877 5412 5.191722 TCATCTCCCTATAAACAAGTGGCTT 59.808 40.000 0.00 0.00 0.00 4.35
2889 5424 7.662258 TGTCGTTTTTGTTTTCATCTCCCTATA 59.338 33.333 0.00 0.00 0.00 1.31
2890 5425 6.488683 TGTCGTTTTTGTTTTCATCTCCCTAT 59.511 34.615 0.00 0.00 0.00 2.57
2900 5435 6.027749 AGATGTGACTGTCGTTTTTGTTTTC 58.972 36.000 2.98 0.00 0.00 2.29
2911 5446 1.205655 ACCATGGAGATGTGACTGTCG 59.794 52.381 21.47 0.00 0.00 4.35
2960 5495 1.344763 CATGGGATTACCTCTCCGACC 59.655 57.143 0.00 0.00 41.11 4.79
2962 5497 1.048601 GCATGGGATTACCTCTCCGA 58.951 55.000 0.00 0.00 41.11 4.55
2983 5518 7.095439 CCTTCAAATTCATCCTAGATTCGCTAC 60.095 40.741 0.00 0.00 0.00 3.58
2984 5519 6.931281 CCTTCAAATTCATCCTAGATTCGCTA 59.069 38.462 0.00 0.00 0.00 4.26
2985 5520 5.762218 CCTTCAAATTCATCCTAGATTCGCT 59.238 40.000 0.00 0.00 0.00 4.93
2986 5521 5.049129 CCCTTCAAATTCATCCTAGATTCGC 60.049 44.000 0.00 0.00 0.00 4.70
2987 5522 5.049129 GCCCTTCAAATTCATCCTAGATTCG 60.049 44.000 0.00 0.00 0.00 3.34
2988 5523 5.829924 TGCCCTTCAAATTCATCCTAGATTC 59.170 40.000 0.00 0.00 0.00 2.52
2989 5524 5.769835 TGCCCTTCAAATTCATCCTAGATT 58.230 37.500 0.00 0.00 0.00 2.40
2990 5525 5.383476 CTGCCCTTCAAATTCATCCTAGAT 58.617 41.667 0.00 0.00 0.00 1.98
2991 5526 4.385643 CCTGCCCTTCAAATTCATCCTAGA 60.386 45.833 0.00 0.00 0.00 2.43
2992 5527 3.887716 CCTGCCCTTCAAATTCATCCTAG 59.112 47.826 0.00 0.00 0.00 3.02
2993 5528 3.269381 ACCTGCCCTTCAAATTCATCCTA 59.731 43.478 0.00 0.00 0.00 2.94
2994 5529 2.043526 ACCTGCCCTTCAAATTCATCCT 59.956 45.455 0.00 0.00 0.00 3.24
2995 5530 2.460669 ACCTGCCCTTCAAATTCATCC 58.539 47.619 0.00 0.00 0.00 3.51
2996 5531 3.511146 TGAACCTGCCCTTCAAATTCATC 59.489 43.478 0.00 0.00 0.00 2.92
2997 5532 3.509442 TGAACCTGCCCTTCAAATTCAT 58.491 40.909 0.00 0.00 0.00 2.57
2998 5533 2.956132 TGAACCTGCCCTTCAAATTCA 58.044 42.857 0.00 0.00 0.00 2.57
2999 5534 3.321968 AGTTGAACCTGCCCTTCAAATTC 59.678 43.478 0.00 0.00 38.92 2.17
3000 5535 3.308401 AGTTGAACCTGCCCTTCAAATT 58.692 40.909 0.00 0.00 38.92 1.82
3001 5536 2.962859 AGTTGAACCTGCCCTTCAAAT 58.037 42.857 0.00 0.11 38.92 2.32
3002 5537 2.452600 AGTTGAACCTGCCCTTCAAA 57.547 45.000 0.00 0.00 38.92 2.69
3003 5538 2.306847 GAAGTTGAACCTGCCCTTCAA 58.693 47.619 0.00 0.00 35.68 2.69
3004 5539 1.214175 TGAAGTTGAACCTGCCCTTCA 59.786 47.619 0.00 0.00 39.21 3.02
3005 5540 1.981256 TGAAGTTGAACCTGCCCTTC 58.019 50.000 0.00 0.00 33.74 3.46
3006 5541 2.452600 TTGAAGTTGAACCTGCCCTT 57.547 45.000 0.00 0.00 0.00 3.95
3007 5542 2.683211 ATTGAAGTTGAACCTGCCCT 57.317 45.000 0.00 0.00 0.00 5.19
3008 5543 3.057526 GTGTATTGAAGTTGAACCTGCCC 60.058 47.826 0.00 0.00 0.00 5.36
3009 5544 3.568007 TGTGTATTGAAGTTGAACCTGCC 59.432 43.478 0.00 0.00 0.00 4.85
3010 5545 4.515191 TCTGTGTATTGAAGTTGAACCTGC 59.485 41.667 0.00 0.00 0.00 4.85
3011 5546 5.760253 AGTCTGTGTATTGAAGTTGAACCTG 59.240 40.000 0.00 0.00 0.00 4.00
3012 5547 5.760253 CAGTCTGTGTATTGAAGTTGAACCT 59.240 40.000 0.00 0.00 0.00 3.50
3013 5548 5.758296 TCAGTCTGTGTATTGAAGTTGAACC 59.242 40.000 0.00 0.00 0.00 3.62
3014 5549 6.844696 TCAGTCTGTGTATTGAAGTTGAAC 57.155 37.500 0.00 0.00 0.00 3.18
3015 5550 7.552687 AGTTTCAGTCTGTGTATTGAAGTTGAA 59.447 33.333 0.00 0.00 31.85 2.69
3016 5551 7.011389 CAGTTTCAGTCTGTGTATTGAAGTTGA 59.989 37.037 0.00 0.00 31.85 3.18
3017 5552 7.128331 CAGTTTCAGTCTGTGTATTGAAGTTG 58.872 38.462 0.00 0.00 31.85 3.16
3018 5553 6.260936 CCAGTTTCAGTCTGTGTATTGAAGTT 59.739 38.462 0.00 0.00 31.85 2.66
3019 5554 5.760253 CCAGTTTCAGTCTGTGTATTGAAGT 59.240 40.000 0.00 0.00 31.85 3.01
3020 5555 5.180117 CCCAGTTTCAGTCTGTGTATTGAAG 59.820 44.000 0.00 0.00 31.85 3.02
3021 5556 5.063204 CCCAGTTTCAGTCTGTGTATTGAA 58.937 41.667 0.00 0.00 0.00 2.69
3022 5557 4.102524 ACCCAGTTTCAGTCTGTGTATTGA 59.897 41.667 0.00 0.00 0.00 2.57
3023 5558 4.389374 ACCCAGTTTCAGTCTGTGTATTG 58.611 43.478 0.00 0.00 0.00 1.90
3024 5559 4.706842 ACCCAGTTTCAGTCTGTGTATT 57.293 40.909 0.00 0.00 0.00 1.89
3025 5560 4.706842 AACCCAGTTTCAGTCTGTGTAT 57.293 40.909 0.00 0.00 0.00 2.29
3026 5561 5.547465 CATAACCCAGTTTCAGTCTGTGTA 58.453 41.667 0.00 0.00 0.00 2.90
3027 5562 4.389374 CATAACCCAGTTTCAGTCTGTGT 58.611 43.478 0.00 0.00 0.00 3.72
3028 5563 3.189287 GCATAACCCAGTTTCAGTCTGTG 59.811 47.826 0.00 0.00 0.00 3.66
3029 5564 3.073062 AGCATAACCCAGTTTCAGTCTGT 59.927 43.478 0.00 0.00 0.00 3.41
3030 5565 3.438087 CAGCATAACCCAGTTTCAGTCTG 59.562 47.826 0.00 0.00 0.00 3.51
3031 5566 3.560025 CCAGCATAACCCAGTTTCAGTCT 60.560 47.826 0.00 0.00 0.00 3.24
3032 5567 2.749621 CCAGCATAACCCAGTTTCAGTC 59.250 50.000 0.00 0.00 0.00 3.51
3033 5568 2.555227 CCCAGCATAACCCAGTTTCAGT 60.555 50.000 0.00 0.00 0.00 3.41
3034 5569 2.094675 CCCAGCATAACCCAGTTTCAG 58.905 52.381 0.00 0.00 0.00 3.02
3035 5570 1.890573 GCCCAGCATAACCCAGTTTCA 60.891 52.381 0.00 0.00 0.00 2.69
3036 5571 0.817654 GCCCAGCATAACCCAGTTTC 59.182 55.000 0.00 0.00 0.00 2.78
3037 5572 0.409484 AGCCCAGCATAACCCAGTTT 59.591 50.000 0.00 0.00 0.00 2.66
3038 5573 0.323725 CAGCCCAGCATAACCCAGTT 60.324 55.000 0.00 0.00 0.00 3.16
3039 5574 1.207488 TCAGCCCAGCATAACCCAGT 61.207 55.000 0.00 0.00 0.00 4.00
3040 5575 0.034186 TTCAGCCCAGCATAACCCAG 60.034 55.000 0.00 0.00 0.00 4.45
3041 5576 0.407528 TTTCAGCCCAGCATAACCCA 59.592 50.000 0.00 0.00 0.00 4.51
3042 5577 0.817654 GTTTCAGCCCAGCATAACCC 59.182 55.000 0.00 0.00 0.00 4.11
3043 5578 1.839424 AGTTTCAGCCCAGCATAACC 58.161 50.000 0.00 0.00 0.00 2.85
3044 5579 2.945668 CCTAGTTTCAGCCCAGCATAAC 59.054 50.000 0.00 0.00 0.00 1.89
3045 5580 2.683742 GCCTAGTTTCAGCCCAGCATAA 60.684 50.000 0.00 0.00 0.00 1.90
3046 5581 1.134098 GCCTAGTTTCAGCCCAGCATA 60.134 52.381 0.00 0.00 0.00 3.14
3047 5582 0.394899 GCCTAGTTTCAGCCCAGCAT 60.395 55.000 0.00 0.00 0.00 3.79
3048 5583 1.002134 GCCTAGTTTCAGCCCAGCA 60.002 57.895 0.00 0.00 0.00 4.41
3049 5584 1.028868 CAGCCTAGTTTCAGCCCAGC 61.029 60.000 0.00 0.00 0.00 4.85
3050 5585 0.615331 TCAGCCTAGTTTCAGCCCAG 59.385 55.000 0.00 0.00 0.00 4.45
3051 5586 0.615331 CTCAGCCTAGTTTCAGCCCA 59.385 55.000 0.00 0.00 0.00 5.36
3052 5587 0.905357 TCTCAGCCTAGTTTCAGCCC 59.095 55.000 0.00 0.00 0.00 5.19
3053 5588 2.559440 CATCTCAGCCTAGTTTCAGCC 58.441 52.381 0.00 0.00 0.00 4.85
3054 5589 2.559440 CCATCTCAGCCTAGTTTCAGC 58.441 52.381 0.00 0.00 0.00 4.26
3055 5590 2.744494 GCCCATCTCAGCCTAGTTTCAG 60.744 54.545 0.00 0.00 0.00 3.02
3056 5591 1.210478 GCCCATCTCAGCCTAGTTTCA 59.790 52.381 0.00 0.00 0.00 2.69
3057 5592 1.488393 AGCCCATCTCAGCCTAGTTTC 59.512 52.381 0.00 0.00 0.00 2.78
3058 5593 1.211457 CAGCCCATCTCAGCCTAGTTT 59.789 52.381 0.00 0.00 0.00 2.66
3059 5594 0.835941 CAGCCCATCTCAGCCTAGTT 59.164 55.000 0.00 0.00 0.00 2.24
3060 5595 1.053264 CCAGCCCATCTCAGCCTAGT 61.053 60.000 0.00 0.00 0.00 2.57
3061 5596 1.753470 CCAGCCCATCTCAGCCTAG 59.247 63.158 0.00 0.00 0.00 3.02
3062 5597 1.767672 CCCAGCCCATCTCAGCCTA 60.768 63.158 0.00 0.00 0.00 3.93
3063 5598 2.929353 ATCCCAGCCCATCTCAGCCT 62.929 60.000 0.00 0.00 0.00 4.58
3064 5599 1.130054 TATCCCAGCCCATCTCAGCC 61.130 60.000 0.00 0.00 0.00 4.85
3065 5600 0.324285 CTATCCCAGCCCATCTCAGC 59.676 60.000 0.00 0.00 0.00 4.26
3066 5601 0.982704 CCTATCCCAGCCCATCTCAG 59.017 60.000 0.00 0.00 0.00 3.35
3067 5602 1.130054 GCCTATCCCAGCCCATCTCA 61.130 60.000 0.00 0.00 0.00 3.27
3068 5603 0.839853 AGCCTATCCCAGCCCATCTC 60.840 60.000 0.00 0.00 0.00 2.75
3069 5604 0.493639 TAGCCTATCCCAGCCCATCT 59.506 55.000 0.00 0.00 0.00 2.90
3070 5605 0.908198 CTAGCCTATCCCAGCCCATC 59.092 60.000 0.00 0.00 0.00 3.51
3071 5606 0.493639 TCTAGCCTATCCCAGCCCAT 59.506 55.000 0.00 0.00 0.00 4.00
3072 5607 0.493639 ATCTAGCCTATCCCAGCCCA 59.506 55.000 0.00 0.00 0.00 5.36
3073 5608 1.662686 AATCTAGCCTATCCCAGCCC 58.337 55.000 0.00 0.00 0.00 5.19
3074 5609 3.797559 AAAATCTAGCCTATCCCAGCC 57.202 47.619 0.00 0.00 0.00 4.85
3075 5610 7.361286 CGAAATTAAAATCTAGCCTATCCCAGC 60.361 40.741 0.00 0.00 0.00 4.85
3076 5611 8.034058 CGAAATTAAAATCTAGCCTATCCCAG 57.966 38.462 0.00 0.00 0.00 4.45
3077 5612 7.979444 CGAAATTAAAATCTAGCCTATCCCA 57.021 36.000 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.