Multiple sequence alignment - TraesCS5A01G180500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G180500 chr5A 100.000 2588 0 0 1 2588 379229359 379226772 0.000000e+00 4780.0
1 TraesCS5A01G180500 chr5D 93.548 899 53 5 793 1686 287405230 287404332 0.000000e+00 1334.0
2 TraesCS5A01G180500 chr5D 90.173 753 52 17 1 738 287406672 287405927 0.000000e+00 961.0
3 TraesCS5A01G180500 chr5D 80.488 164 24 8 1721 1880 60534144 60534303 4.520000e-23 119.0
4 TraesCS5A01G180500 chr5B 84.226 1008 105 20 1049 2016 326090677 326089684 0.000000e+00 931.0
5 TraesCS5A01G180500 chr5B 83.540 644 64 17 2 636 326163892 326163282 4.830000e-157 564.0
6 TraesCS5A01G180500 chr5B 86.534 401 38 13 2192 2588 133575157 133574769 6.620000e-116 427.0
7 TraesCS5A01G180500 chr5B 88.830 188 14 5 793 980 326162545 326162365 9.320000e-55 224.0
8 TraesCS5A01G180500 chr5B 87.037 108 13 1 633 739 326163337 326163230 1.260000e-23 121.0
9 TraesCS5A01G180500 chr5B 91.489 47 4 0 2033 2079 675872569 675872615 5.980000e-07 65.8
10 TraesCS5A01G180500 chr4D 87.282 401 44 6 2194 2588 500844878 500845277 3.930000e-123 451.0
11 TraesCS5A01G180500 chr7D 87.306 386 43 6 2194 2575 162816067 162816450 1.100000e-118 436.0
12 TraesCS5A01G180500 chr2B 86.250 400 45 8 2195 2588 474394192 474393797 2.380000e-115 425.0
13 TraesCS5A01G180500 chr3D 86.364 396 42 8 2198 2588 479607117 479606729 3.080000e-114 422.0
14 TraesCS5A01G180500 chr7A 86.329 395 41 8 2200 2588 19713648 19713261 3.980000e-113 418.0
15 TraesCS5A01G180500 chr7A 75.301 332 58 17 1704 2019 646840138 646840461 1.250000e-28 137.0
16 TraesCS5A01G180500 chr1D 86.000 400 44 8 2195 2588 354453367 354452974 3.980000e-113 418.0
17 TraesCS5A01G180500 chr6B 85.786 401 48 7 2194 2588 29243555 29243158 1.430000e-112 416.0
18 TraesCS5A01G180500 chr3A 86.111 396 43 9 2198 2588 623035422 623035034 1.430000e-112 416.0
19 TraesCS5A01G180500 chr7B 86.905 168 20 2 1853 2019 417873054 417872888 1.220000e-43 187.0
20 TraesCS5A01G180500 chr7B 79.339 242 32 10 1704 1940 611262620 611262848 1.240000e-33 154.0
21 TraesCS5A01G180500 chrUn 79.339 242 32 10 1704 1940 389438363 389438591 1.240000e-33 154.0
22 TraesCS5A01G180500 chrUn 79.339 242 32 10 1704 1940 415837426 415837654 1.240000e-33 154.0
23 TraesCS5A01G180500 chrUn 78.926 242 33 10 1704 1940 361588125 361588353 5.770000e-32 148.0
24 TraesCS5A01G180500 chr2D 87.500 56 7 0 2033 2088 629868870 629868815 5.980000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G180500 chr5A 379226772 379229359 2587 True 4780.0 4780 100.0000 1 2588 1 chr5A.!!$R1 2587
1 TraesCS5A01G180500 chr5D 287404332 287406672 2340 True 1147.5 1334 91.8605 1 1686 2 chr5D.!!$R1 1685
2 TraesCS5A01G180500 chr5B 326089684 326090677 993 True 931.0 931 84.2260 1049 2016 1 chr5B.!!$R2 967
3 TraesCS5A01G180500 chr5B 326162365 326163892 1527 True 303.0 564 86.4690 2 980 3 chr5B.!!$R3 978

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 1668 0.441145 AAACTTACGATTGACCGCGC 59.559 50.0 0.0 0.0 0.0 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 2781 0.035152 TACGTTCAGGCCGAGTAGGA 60.035 55.0 0.0 0.0 45.0 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 0.885596 CCCACGACAGGCCGTAAAAA 60.886 55.000 0.00 0.00 41.29 1.94
113 114 4.379652 GTTGCATTTTGATCCAAACTGGT 58.620 39.130 10.36 0.00 39.03 4.00
121 122 2.198304 ATCCAAACTGGTCGGGAGCC 62.198 60.000 0.00 0.00 39.03 4.70
146 147 1.152440 AAAATGGGTTGCCACGGGA 60.152 52.632 0.00 0.00 0.00 5.14
211 212 3.214328 GGATTCATCCAACGCTATGGTT 58.786 45.455 0.51 0.00 46.38 3.67
217 218 2.147958 TCCAACGCTATGGTTGTGAAC 58.852 47.619 4.75 0.00 44.48 3.18
260 262 3.125316 GCATCTATGTGCCGCTTATTACC 59.875 47.826 0.00 0.00 39.18 2.85
322 324 1.626356 GCCCAGTAGGATGTGGCTCA 61.626 60.000 0.00 0.00 39.05 4.26
482 492 3.726291 AACTTCCAAAACAATGTCCGG 57.274 42.857 0.00 0.00 0.00 5.14
485 495 1.080839 CCAAAACAATGTCCGGGCG 60.081 57.895 0.00 0.00 0.00 6.13
556 567 8.363390 TGAAAAATGGTGTATACATTGCAAAGA 58.637 29.630 9.18 0.00 38.47 2.52
791 1120 9.553418 AAAATCCGAAAAAGAAACAAAATGTTG 57.447 25.926 0.00 0.00 40.14 3.33
792 1121 6.654793 TCCGAAAAAGAAACAAAATGTTGG 57.345 33.333 0.00 0.00 40.14 3.77
793 1122 5.582665 TCCGAAAAAGAAACAAAATGTTGGG 59.417 36.000 0.00 0.00 40.14 4.12
794 1123 5.582665 CCGAAAAAGAAACAAAATGTTGGGA 59.417 36.000 0.00 0.00 40.14 4.37
837 1509 4.832608 AAGTCGGAATCGGCGGCC 62.833 66.667 9.54 9.54 46.91 6.13
848 1520 0.907704 TCGGCGGCCCCAATCTATAT 60.908 55.000 14.55 0.00 0.00 0.86
849 1521 0.462047 CGGCGGCCCCAATCTATATC 60.462 60.000 14.55 0.00 0.00 1.63
878 1550 2.998279 GCTGGTTGCCCTGATGCAC 61.998 63.158 0.00 0.00 41.88 4.57
886 1558 1.523154 GCCCTGATGCACGAACCAAA 61.523 55.000 0.00 0.00 0.00 3.28
934 1606 8.248253 TCGTCAAACTTAATAACAGCAGATAGA 58.752 33.333 0.00 0.00 0.00 1.98
941 1613 8.637986 ACTTAATAACAGCAGATAGAAGAGGAG 58.362 37.037 0.00 0.00 0.00 3.69
960 1636 3.070302 GGAGGAGAGAGAGAGAGAGAGAC 59.930 56.522 0.00 0.00 0.00 3.36
980 1656 6.477033 AGAGACACGCATCATATCAAACTTAC 59.523 38.462 0.00 0.00 0.00 2.34
981 1657 5.232202 AGACACGCATCATATCAAACTTACG 59.768 40.000 0.00 0.00 0.00 3.18
987 1663 6.787515 CGCATCATATCAAACTTACGATTGAC 59.212 38.462 0.00 0.00 38.29 3.18
988 1664 7.072030 GCATCATATCAAACTTACGATTGACC 58.928 38.462 0.00 0.00 38.29 4.02
991 1667 1.722464 TCAAACTTACGATTGACCGCG 59.278 47.619 0.00 0.00 30.94 6.46
992 1668 0.441145 AAACTTACGATTGACCGCGC 59.559 50.000 0.00 0.00 0.00 6.86
994 1670 2.509786 TTACGATTGACCGCGCCC 60.510 61.111 0.00 0.00 0.00 6.13
1020 1696 4.194720 GATCGGCACTCGGAGCGT 62.195 66.667 4.58 0.00 39.77 5.07
1142 1818 2.592861 GCACCTCATGATCCGGGC 60.593 66.667 0.00 0.00 0.00 6.13
1237 1913 2.972819 GCCACCCTGTTCCTCCTCC 61.973 68.421 0.00 0.00 0.00 4.30
1622 2311 6.207417 GGGTTCAGTCATTGAGATTTGAGAAA 59.793 38.462 0.00 0.00 37.07 2.52
1628 2317 6.093219 AGTCATTGAGATTTGAGAAACATCCG 59.907 38.462 0.00 0.00 0.00 4.18
1654 2343 2.324330 CGGGCAATGTTCGTGCAGA 61.324 57.895 0.00 0.00 44.07 4.26
1695 2393 7.041440 TGTTCGAATTCTAAGAGTGATGCAAAA 60.041 33.333 0.00 0.00 0.00 2.44
1753 2465 8.987890 TGCATTTTACATCTTTTAAAAAGAGGC 58.012 29.630 0.00 0.00 33.31 4.70
1793 2506 4.796830 GTGCATTGATGATGTAAAGTGCAG 59.203 41.667 0.00 0.00 41.38 4.41
1794 2507 3.795101 GCATTGATGATGTAAAGTGCAGC 59.205 43.478 0.00 0.00 38.07 5.25
1798 2511 2.113860 TGATGTAAAGTGCAGCTCCC 57.886 50.000 0.00 0.00 0.00 4.30
1801 2514 3.199727 TGATGTAAAGTGCAGCTCCCATA 59.800 43.478 0.00 0.00 0.00 2.74
1802 2515 3.712016 TGTAAAGTGCAGCTCCCATAA 57.288 42.857 0.00 0.00 0.00 1.90
1808 2521 4.712051 AGTGCAGCTCCCATAAATGATA 57.288 40.909 0.00 0.00 0.00 2.15
1945 2660 9.569167 CAACTAGTTAAACTACTCATCATTCGA 57.431 33.333 8.04 0.00 0.00 3.71
1948 2663 6.574350 AGTTAAACTACTCATCATTCGAGGG 58.426 40.000 0.00 0.00 34.66 4.30
1954 2669 1.071228 CTCATCATTCGAGGGCATCCA 59.929 52.381 0.00 0.00 34.83 3.41
1961 2676 1.360551 CGAGGGCATCCAGTACTCG 59.639 63.158 0.00 0.00 43.85 4.18
1964 2679 2.029623 GAGGGCATCCAGTACTCGTTA 58.970 52.381 0.00 0.00 34.83 3.18
1975 2690 5.421056 TCCAGTACTCGTTATTGTCCTCATT 59.579 40.000 0.00 0.00 0.00 2.57
1977 2692 5.520288 CAGTACTCGTTATTGTCCTCATTGG 59.480 44.000 0.00 0.00 37.10 3.16
1988 2703 3.346734 TCATTGGAGGGCCCCCAC 61.347 66.667 26.61 15.13 38.92 4.61
1996 2711 2.168272 GAGGGCCCCCACAATTCCTT 62.168 60.000 21.43 0.00 38.92 3.36
1999 2714 1.257750 GGCCCCCACAATTCCTTGTC 61.258 60.000 0.00 0.00 43.76 3.18
2000 2715 1.595093 GCCCCCACAATTCCTTGTCG 61.595 60.000 0.00 0.00 43.76 4.35
2001 2716 0.251165 CCCCCACAATTCCTTGTCGT 60.251 55.000 0.00 0.00 43.76 4.34
2006 2721 2.076863 CACAATTCCTTGTCGTCCTCC 58.923 52.381 0.00 0.00 43.76 4.30
2007 2722 1.978580 ACAATTCCTTGTCGTCCTCCT 59.021 47.619 0.00 0.00 41.86 3.69
2009 2724 3.003480 CAATTCCTTGTCGTCCTCCTTC 58.997 50.000 0.00 0.00 0.00 3.46
2010 2725 0.601558 TTCCTTGTCGTCCTCCTTCG 59.398 55.000 0.00 0.00 0.00 3.79
2011 2726 0.251033 TCCTTGTCGTCCTCCTTCGA 60.251 55.000 0.00 0.00 0.00 3.71
2023 2738 3.157932 CTCCTTCGAGGACTCACATTC 57.842 52.381 0.00 0.00 40.06 2.67
2024 2739 2.757868 CTCCTTCGAGGACTCACATTCT 59.242 50.000 0.00 0.00 40.06 2.40
2025 2740 3.165875 TCCTTCGAGGACTCACATTCTT 58.834 45.455 0.00 0.00 40.06 2.52
2026 2741 3.193691 TCCTTCGAGGACTCACATTCTTC 59.806 47.826 0.00 0.00 40.06 2.87
2027 2742 3.056536 CCTTCGAGGACTCACATTCTTCA 60.057 47.826 0.00 0.00 37.67 3.02
2028 2743 3.577649 TCGAGGACTCACATTCTTCAC 57.422 47.619 0.00 0.00 0.00 3.18
2029 2744 2.231478 TCGAGGACTCACATTCTTCACC 59.769 50.000 0.00 0.00 0.00 4.02
2030 2745 2.029020 CGAGGACTCACATTCTTCACCA 60.029 50.000 0.00 0.00 0.00 4.17
2031 2746 3.330267 GAGGACTCACATTCTTCACCAC 58.670 50.000 0.00 0.00 0.00 4.16
2032 2747 2.039084 AGGACTCACATTCTTCACCACC 59.961 50.000 0.00 0.00 0.00 4.61
2033 2748 2.039084 GGACTCACATTCTTCACCACCT 59.961 50.000 0.00 0.00 0.00 4.00
2034 2749 3.496870 GGACTCACATTCTTCACCACCTT 60.497 47.826 0.00 0.00 0.00 3.50
2035 2750 3.744660 ACTCACATTCTTCACCACCTTC 58.255 45.455 0.00 0.00 0.00 3.46
2036 2751 3.392616 ACTCACATTCTTCACCACCTTCT 59.607 43.478 0.00 0.00 0.00 2.85
2037 2752 4.141390 ACTCACATTCTTCACCACCTTCTT 60.141 41.667 0.00 0.00 0.00 2.52
2038 2753 4.389374 TCACATTCTTCACCACCTTCTTC 58.611 43.478 0.00 0.00 0.00 2.87
2039 2754 4.103153 TCACATTCTTCACCACCTTCTTCT 59.897 41.667 0.00 0.00 0.00 2.85
2040 2755 4.214971 CACATTCTTCACCACCTTCTTCTG 59.785 45.833 0.00 0.00 0.00 3.02
2041 2756 2.550830 TCTTCACCACCTTCTTCTGC 57.449 50.000 0.00 0.00 0.00 4.26
2042 2757 2.050144 TCTTCACCACCTTCTTCTGCT 58.950 47.619 0.00 0.00 0.00 4.24
2043 2758 2.037772 TCTTCACCACCTTCTTCTGCTC 59.962 50.000 0.00 0.00 0.00 4.26
2044 2759 0.318441 TCACCACCTTCTTCTGCTCG 59.682 55.000 0.00 0.00 0.00 5.03
2045 2760 0.671781 CACCACCTTCTTCTGCTCGG 60.672 60.000 0.00 0.00 0.00 4.63
2046 2761 1.743252 CCACCTTCTTCTGCTCGGC 60.743 63.158 0.00 0.00 0.00 5.54
2047 2762 1.743252 CACCTTCTTCTGCTCGGCC 60.743 63.158 0.00 0.00 0.00 6.13
2048 2763 1.915769 ACCTTCTTCTGCTCGGCCT 60.916 57.895 0.00 0.00 0.00 5.19
2049 2764 1.153469 CCTTCTTCTGCTCGGCCTC 60.153 63.158 0.00 0.00 0.00 4.70
2050 2765 1.518133 CTTCTTCTGCTCGGCCTCG 60.518 63.158 0.00 0.00 37.82 4.63
2051 2766 3.649277 TTCTTCTGCTCGGCCTCGC 62.649 63.158 0.00 3.27 36.13 5.03
2061 2776 2.742372 GGCCTCGCGCTTTCAGAA 60.742 61.111 5.56 0.00 37.74 3.02
2062 2777 2.744768 GGCCTCGCGCTTTCAGAAG 61.745 63.158 5.56 0.00 37.74 2.85
2063 2778 2.029844 GCCTCGCGCTTTCAGAAGT 61.030 57.895 5.56 0.00 35.25 3.01
2064 2779 0.736325 GCCTCGCGCTTTCAGAAGTA 60.736 55.000 5.56 0.00 35.25 2.24
2065 2780 1.272781 CCTCGCGCTTTCAGAAGTAG 58.727 55.000 5.56 0.00 35.25 2.57
2066 2781 1.402984 CCTCGCGCTTTCAGAAGTAGT 60.403 52.381 5.56 0.00 35.25 2.73
2067 2782 1.914700 CTCGCGCTTTCAGAAGTAGTC 59.085 52.381 5.56 0.00 35.25 2.59
2068 2783 0.992802 CGCGCTTTCAGAAGTAGTCC 59.007 55.000 5.56 0.00 35.25 3.85
2069 2784 1.402984 CGCGCTTTCAGAAGTAGTCCT 60.403 52.381 5.56 0.00 35.25 3.85
2070 2785 2.159421 CGCGCTTTCAGAAGTAGTCCTA 60.159 50.000 5.56 0.00 35.25 2.94
2071 2786 3.180613 GCGCTTTCAGAAGTAGTCCTAC 58.819 50.000 0.00 0.00 35.25 3.18
2073 2788 4.664188 CGCTTTCAGAAGTAGTCCTACTC 58.336 47.826 7.41 2.59 44.96 2.59
2074 2789 4.664188 GCTTTCAGAAGTAGTCCTACTCG 58.336 47.826 7.41 0.96 44.96 4.18
2075 2790 4.439016 GCTTTCAGAAGTAGTCCTACTCGG 60.439 50.000 7.41 3.54 44.96 4.63
2076 2791 2.641305 TCAGAAGTAGTCCTACTCGGC 58.359 52.381 7.41 1.73 44.96 5.54
2077 2792 1.677052 CAGAAGTAGTCCTACTCGGCC 59.323 57.143 7.41 0.00 44.96 6.13
2078 2793 1.565288 AGAAGTAGTCCTACTCGGCCT 59.435 52.381 7.41 1.49 44.96 5.19
2079 2794 1.677052 GAAGTAGTCCTACTCGGCCTG 59.323 57.143 7.41 0.00 44.96 4.85
2080 2795 0.917533 AGTAGTCCTACTCGGCCTGA 59.082 55.000 0.00 0.00 42.30 3.86
2081 2796 1.284198 AGTAGTCCTACTCGGCCTGAA 59.716 52.381 0.00 0.00 42.30 3.02
2082 2797 1.404748 GTAGTCCTACTCGGCCTGAAC 59.595 57.143 0.00 0.00 33.45 3.18
2083 2798 1.139095 GTCCTACTCGGCCTGAACG 59.861 63.158 0.00 0.00 0.00 3.95
2084 2799 1.303888 TCCTACTCGGCCTGAACGT 60.304 57.895 0.00 0.00 0.00 3.99
2085 2800 0.035152 TCCTACTCGGCCTGAACGTA 60.035 55.000 0.00 0.00 0.00 3.57
2086 2801 0.100146 CCTACTCGGCCTGAACGTAC 59.900 60.000 0.00 0.00 0.00 3.67
2087 2802 1.093159 CTACTCGGCCTGAACGTACT 58.907 55.000 0.00 0.00 0.00 2.73
2088 2803 2.283298 CTACTCGGCCTGAACGTACTA 58.717 52.381 0.00 0.00 0.00 1.82
2089 2804 1.760192 ACTCGGCCTGAACGTACTAT 58.240 50.000 0.00 0.00 0.00 2.12
2090 2805 1.404391 ACTCGGCCTGAACGTACTATG 59.596 52.381 0.00 0.00 0.00 2.23
2091 2806 0.742505 TCGGCCTGAACGTACTATGG 59.257 55.000 0.00 0.00 0.00 2.74
2092 2807 0.458669 CGGCCTGAACGTACTATGGT 59.541 55.000 0.00 0.00 0.00 3.55
2093 2808 1.134907 CGGCCTGAACGTACTATGGTT 60.135 52.381 0.00 0.00 0.00 3.67
2094 2809 2.099592 CGGCCTGAACGTACTATGGTTA 59.900 50.000 0.00 0.00 0.00 2.85
2095 2810 3.243636 CGGCCTGAACGTACTATGGTTAT 60.244 47.826 0.00 0.00 0.00 1.89
2096 2811 4.700700 GGCCTGAACGTACTATGGTTATT 58.299 43.478 0.00 0.00 0.00 1.40
2097 2812 5.121105 GGCCTGAACGTACTATGGTTATTT 58.879 41.667 0.00 0.00 0.00 1.40
2098 2813 5.587443 GGCCTGAACGTACTATGGTTATTTT 59.413 40.000 0.00 0.00 0.00 1.82
2099 2814 6.094464 GGCCTGAACGTACTATGGTTATTTTT 59.906 38.462 0.00 0.00 0.00 1.94
2100 2815 6.964934 GCCTGAACGTACTATGGTTATTTTTG 59.035 38.462 0.00 0.00 0.00 2.44
2101 2816 6.964934 CCTGAACGTACTATGGTTATTTTTGC 59.035 38.462 0.00 0.00 0.00 3.68
2102 2817 7.361371 CCTGAACGTACTATGGTTATTTTTGCA 60.361 37.037 0.00 0.00 0.00 4.08
2103 2818 8.046294 TGAACGTACTATGGTTATTTTTGCAT 57.954 30.769 0.00 0.00 0.00 3.96
2104 2819 8.178964 TGAACGTACTATGGTTATTTTTGCATC 58.821 33.333 0.00 0.00 0.00 3.91
2105 2820 7.859325 ACGTACTATGGTTATTTTTGCATCT 57.141 32.000 0.00 0.00 0.00 2.90
2106 2821 8.951787 ACGTACTATGGTTATTTTTGCATCTA 57.048 30.769 0.00 0.00 0.00 1.98
2107 2822 8.823818 ACGTACTATGGTTATTTTTGCATCTAC 58.176 33.333 0.00 0.00 0.00 2.59
2108 2823 8.822855 CGTACTATGGTTATTTTTGCATCTACA 58.177 33.333 0.00 0.00 0.00 2.74
2127 2842 9.877137 CATCTACATTATCTATACGAGATGCTC 57.123 37.037 0.00 0.00 45.05 4.26
2128 2843 9.845740 ATCTACATTATCTATACGAGATGCTCT 57.154 33.333 0.00 0.00 45.05 4.09
2135 2850 9.945904 TTATCTATACGAGATGCTCTAAAGAGA 57.054 33.333 11.20 0.00 45.05 3.10
2136 2851 7.661127 TCTATACGAGATGCTCTAAAGAGAC 57.339 40.000 11.20 3.29 44.74 3.36
2137 2852 3.684103 ACGAGATGCTCTAAAGAGACG 57.316 47.619 11.20 9.38 44.74 4.18
2138 2853 3.271729 ACGAGATGCTCTAAAGAGACGA 58.728 45.455 11.20 0.00 44.74 4.20
2139 2854 3.690139 ACGAGATGCTCTAAAGAGACGAA 59.310 43.478 11.20 0.00 44.74 3.85
2140 2855 4.336993 ACGAGATGCTCTAAAGAGACGAAT 59.663 41.667 11.20 0.00 44.74 3.34
2141 2856 4.674662 CGAGATGCTCTAAAGAGACGAATG 59.325 45.833 11.20 0.00 44.74 2.67
2142 2857 4.367450 AGATGCTCTAAAGAGACGAATGC 58.633 43.478 11.20 0.00 44.74 3.56
2143 2858 3.592898 TGCTCTAAAGAGACGAATGCA 57.407 42.857 11.20 0.00 44.74 3.96
2144 2859 4.128925 TGCTCTAAAGAGACGAATGCAT 57.871 40.909 11.20 0.00 44.74 3.96
2145 2860 5.262588 TGCTCTAAAGAGACGAATGCATA 57.737 39.130 11.20 0.00 44.74 3.14
2146 2861 5.284864 TGCTCTAAAGAGACGAATGCATAG 58.715 41.667 11.20 0.00 44.74 2.23
2147 2862 5.163509 TGCTCTAAAGAGACGAATGCATAGT 60.164 40.000 11.20 3.10 44.74 2.12
2148 2863 5.751028 GCTCTAAAGAGACGAATGCATAGTT 59.249 40.000 11.20 0.00 44.74 2.24
2149 2864 6.256757 GCTCTAAAGAGACGAATGCATAGTTT 59.743 38.462 11.20 0.00 44.74 2.66
2150 2865 7.435488 GCTCTAAAGAGACGAATGCATAGTTTA 59.565 37.037 11.20 0.00 44.74 2.01
2151 2866 9.302345 CTCTAAAGAGACGAATGCATAGTTTAA 57.698 33.333 0.00 0.00 44.74 1.52
2152 2867 9.647797 TCTAAAGAGACGAATGCATAGTTTAAA 57.352 29.630 0.00 0.00 0.00 1.52
2178 2893 9.987272 AATTTTAGATAGATCGACATGTCATGA 57.013 29.630 24.93 15.27 0.00 3.07
2180 2895 8.976986 TTTAGATAGATCGACATGTCATGATG 57.023 34.615 24.93 8.85 0.00 3.07
2181 2896 6.587206 AGATAGATCGACATGTCATGATGT 57.413 37.500 24.93 19.07 39.34 3.06
2182 2897 6.388278 AGATAGATCGACATGTCATGATGTG 58.612 40.000 24.93 7.58 36.67 3.21
2183 2898 4.397481 AGATCGACATGTCATGATGTGT 57.603 40.909 24.93 13.72 36.67 3.72
2184 2899 4.117685 AGATCGACATGTCATGATGTGTG 58.882 43.478 24.93 6.00 36.67 3.82
2185 2900 3.317603 TCGACATGTCATGATGTGTGT 57.682 42.857 24.93 11.36 36.67 3.72
2186 2901 4.448537 TCGACATGTCATGATGTGTGTA 57.551 40.909 24.93 5.75 36.67 2.90
2187 2902 4.815269 TCGACATGTCATGATGTGTGTAA 58.185 39.130 24.93 3.84 36.67 2.41
2188 2903 5.418676 TCGACATGTCATGATGTGTGTAAT 58.581 37.500 24.93 0.00 36.67 1.89
2189 2904 5.874261 TCGACATGTCATGATGTGTGTAATT 59.126 36.000 24.93 0.00 36.67 1.40
2190 2905 7.038659 TCGACATGTCATGATGTGTGTAATTA 58.961 34.615 24.93 0.00 36.67 1.40
2191 2906 7.010091 TCGACATGTCATGATGTGTGTAATTAC 59.990 37.037 24.93 8.75 36.67 1.89
2192 2907 7.201513 CGACATGTCATGATGTGTGTAATTACA 60.202 37.037 24.93 14.35 36.67 2.41
2193 2908 8.334263 ACATGTCATGATGTGTGTAATTACAA 57.666 30.769 19.63 5.43 38.04 2.41
2194 2909 8.791675 ACATGTCATGATGTGTGTAATTACAAA 58.208 29.630 19.63 12.23 38.04 2.83
2195 2910 9.791820 CATGTCATGATGTGTGTAATTACAAAT 57.208 29.630 19.63 13.30 38.04 2.32
2197 2912 9.230122 TGTCATGATGTGTGTAATTACAAATCT 57.770 29.630 19.63 6.35 42.97 2.40
2220 2935 8.173542 TCTTACATTTTTAAGAAGTTGGTCCC 57.826 34.615 0.00 0.00 35.55 4.46
2221 2936 7.780745 TCTTACATTTTTAAGAAGTTGGTCCCA 59.219 33.333 0.00 0.00 35.55 4.37
2222 2937 6.800072 ACATTTTTAAGAAGTTGGTCCCAA 57.200 33.333 0.00 0.00 0.00 4.12
2223 2938 7.373617 ACATTTTTAAGAAGTTGGTCCCAAT 57.626 32.000 1.43 0.00 38.28 3.16
2224 2939 7.801104 ACATTTTTAAGAAGTTGGTCCCAATT 58.199 30.769 1.43 0.00 38.28 2.32
2225 2940 7.931407 ACATTTTTAAGAAGTTGGTCCCAATTC 59.069 33.333 1.43 7.38 38.28 2.17
2226 2941 7.669089 TTTTTAAGAAGTTGGTCCCAATTCT 57.331 32.000 1.43 9.26 38.28 2.40
2227 2942 6.894339 TTTAAGAAGTTGGTCCCAATTCTC 57.106 37.500 16.84 9.15 38.28 2.87
2228 2943 4.731313 AAGAAGTTGGTCCCAATTCTCT 57.269 40.909 16.84 10.65 38.28 3.10
2229 2944 4.293662 AGAAGTTGGTCCCAATTCTCTC 57.706 45.455 1.43 0.00 38.28 3.20
2230 2945 3.652869 AGAAGTTGGTCCCAATTCTCTCA 59.347 43.478 1.43 0.00 38.28 3.27
2231 2946 4.104738 AGAAGTTGGTCCCAATTCTCTCAA 59.895 41.667 1.43 0.00 38.28 3.02
2232 2947 3.756117 AGTTGGTCCCAATTCTCTCAAC 58.244 45.455 1.43 0.00 38.28 3.18
2233 2948 3.138283 AGTTGGTCCCAATTCTCTCAACA 59.862 43.478 1.43 0.00 38.28 3.33
2234 2949 4.082125 GTTGGTCCCAATTCTCTCAACAT 58.918 43.478 1.43 0.00 38.28 2.71
2235 2950 5.014123 AGTTGGTCCCAATTCTCTCAACATA 59.986 40.000 1.43 0.00 38.28 2.29
2236 2951 4.843728 TGGTCCCAATTCTCTCAACATAC 58.156 43.478 0.00 0.00 0.00 2.39
2237 2952 4.288366 TGGTCCCAATTCTCTCAACATACA 59.712 41.667 0.00 0.00 0.00 2.29
2238 2953 5.222027 TGGTCCCAATTCTCTCAACATACAA 60.222 40.000 0.00 0.00 0.00 2.41
2239 2954 5.710099 GGTCCCAATTCTCTCAACATACAAA 59.290 40.000 0.00 0.00 0.00 2.83
2240 2955 6.127897 GGTCCCAATTCTCTCAACATACAAAG 60.128 42.308 0.00 0.00 0.00 2.77
2241 2956 6.431234 GTCCCAATTCTCTCAACATACAAAGT 59.569 38.462 0.00 0.00 0.00 2.66
2242 2957 6.430925 TCCCAATTCTCTCAACATACAAAGTG 59.569 38.462 0.00 0.00 0.00 3.16
2243 2958 6.207417 CCCAATTCTCTCAACATACAAAGTGT 59.793 38.462 0.00 0.00 0.00 3.55
2244 2959 7.301054 CCAATTCTCTCAACATACAAAGTGTC 58.699 38.462 0.00 0.00 0.00 3.67
2245 2960 7.301054 CAATTCTCTCAACATACAAAGTGTCC 58.699 38.462 0.00 0.00 0.00 4.02
2246 2961 5.545063 TCTCTCAACATACAAAGTGTCCA 57.455 39.130 0.00 0.00 0.00 4.02
2247 2962 5.297547 TCTCTCAACATACAAAGTGTCCAC 58.702 41.667 0.00 0.00 0.00 4.02
2248 2963 4.385825 TCTCAACATACAAAGTGTCCACC 58.614 43.478 0.00 0.00 0.00 4.61
2249 2964 4.102524 TCTCAACATACAAAGTGTCCACCT 59.897 41.667 0.00 0.00 0.00 4.00
2250 2965 4.385825 TCAACATACAAAGTGTCCACCTC 58.614 43.478 0.00 0.00 0.00 3.85
2251 2966 4.133820 CAACATACAAAGTGTCCACCTCA 58.866 43.478 0.00 0.00 0.00 3.86
2252 2967 4.431416 ACATACAAAGTGTCCACCTCAA 57.569 40.909 0.00 0.00 0.00 3.02
2253 2968 4.134563 ACATACAAAGTGTCCACCTCAAC 58.865 43.478 0.00 0.00 0.00 3.18
2254 2969 1.663695 ACAAAGTGTCCACCTCAACG 58.336 50.000 0.00 0.00 0.00 4.10
2255 2970 1.065709 ACAAAGTGTCCACCTCAACGT 60.066 47.619 0.00 0.00 0.00 3.99
2256 2971 1.597663 CAAAGTGTCCACCTCAACGTC 59.402 52.381 0.00 0.00 0.00 4.34
2257 2972 0.106149 AAGTGTCCACCTCAACGTCC 59.894 55.000 0.00 0.00 0.00 4.79
2258 2973 1.301479 GTGTCCACCTCAACGTCCC 60.301 63.158 0.00 0.00 0.00 4.46
2259 2974 1.762858 TGTCCACCTCAACGTCCCA 60.763 57.895 0.00 0.00 0.00 4.37
2260 2975 1.125093 TGTCCACCTCAACGTCCCAT 61.125 55.000 0.00 0.00 0.00 4.00
2261 2976 0.036306 GTCCACCTCAACGTCCCATT 59.964 55.000 0.00 0.00 0.00 3.16
2262 2977 1.276989 GTCCACCTCAACGTCCCATTA 59.723 52.381 0.00 0.00 0.00 1.90
2263 2978 1.979308 TCCACCTCAACGTCCCATTAA 59.021 47.619 0.00 0.00 0.00 1.40
2264 2979 2.027561 TCCACCTCAACGTCCCATTAAG 60.028 50.000 0.00 0.00 0.00 1.85
2265 2980 2.027561 CCACCTCAACGTCCCATTAAGA 60.028 50.000 0.00 0.00 0.00 2.10
2266 2981 3.558321 CCACCTCAACGTCCCATTAAGAA 60.558 47.826 0.00 0.00 0.00 2.52
2267 2982 4.261801 CACCTCAACGTCCCATTAAGAAT 58.738 43.478 0.00 0.00 0.00 2.40
2268 2983 4.094887 CACCTCAACGTCCCATTAAGAATG 59.905 45.833 0.00 0.00 38.63 2.67
2269 2984 3.065371 CCTCAACGTCCCATTAAGAATGC 59.935 47.826 0.00 0.00 37.57 3.56
2270 2985 3.680490 TCAACGTCCCATTAAGAATGCA 58.320 40.909 0.00 0.00 37.57 3.96
2271 2986 4.269183 TCAACGTCCCATTAAGAATGCAT 58.731 39.130 0.00 0.00 37.57 3.96
2272 2987 4.704540 TCAACGTCCCATTAAGAATGCATT 59.295 37.500 12.83 12.83 37.57 3.56
2273 2988 4.637483 ACGTCCCATTAAGAATGCATTG 57.363 40.909 18.59 1.17 37.57 2.82
2274 2989 4.269183 ACGTCCCATTAAGAATGCATTGA 58.731 39.130 18.59 1.92 37.57 2.57
2275 2990 4.704540 ACGTCCCATTAAGAATGCATTGAA 59.295 37.500 18.59 8.50 37.57 2.69
2276 2991 5.163622 ACGTCCCATTAAGAATGCATTGAAG 60.164 40.000 18.59 9.74 37.57 3.02
2277 2992 5.163622 CGTCCCATTAAGAATGCATTGAAGT 60.164 40.000 18.59 1.34 37.57 3.01
2278 2993 6.268566 GTCCCATTAAGAATGCATTGAAGTC 58.731 40.000 18.59 1.30 37.57 3.01
2279 2994 6.096001 GTCCCATTAAGAATGCATTGAAGTCT 59.904 38.462 18.59 4.09 37.57 3.24
2280 2995 6.664816 TCCCATTAAGAATGCATTGAAGTCTT 59.335 34.615 18.59 15.52 37.57 3.01
2281 2996 6.976925 CCCATTAAGAATGCATTGAAGTCTTC 59.023 38.462 18.59 5.58 37.57 2.87
2282 2997 7.147949 CCCATTAAGAATGCATTGAAGTCTTCT 60.148 37.037 18.59 2.54 37.57 2.85
2283 2998 8.248945 CCATTAAGAATGCATTGAAGTCTTCTT 58.751 33.333 18.59 14.07 37.57 2.52
2284 2999 9.635520 CATTAAGAATGCATTGAAGTCTTCTTT 57.364 29.630 18.59 0.00 35.32 2.52
2285 3000 9.852091 ATTAAGAATGCATTGAAGTCTTCTTTC 57.148 29.630 18.59 0.00 35.32 2.62
2286 3001 7.521871 AAGAATGCATTGAAGTCTTCTTTCT 57.478 32.000 18.59 0.10 30.89 2.52
2287 3002 7.143514 AGAATGCATTGAAGTCTTCTTTCTC 57.856 36.000 18.59 0.00 33.64 2.87
2288 3003 6.713903 AGAATGCATTGAAGTCTTCTTTCTCA 59.286 34.615 18.59 6.01 33.64 3.27
2289 3004 5.679734 TGCATTGAAGTCTTCTTTCTCAC 57.320 39.130 13.67 0.00 33.64 3.51
2290 3005 5.371526 TGCATTGAAGTCTTCTTTCTCACT 58.628 37.500 13.67 0.00 33.64 3.41
2291 3006 6.524734 TGCATTGAAGTCTTCTTTCTCACTA 58.475 36.000 13.67 0.00 33.64 2.74
2292 3007 6.992123 TGCATTGAAGTCTTCTTTCTCACTAA 59.008 34.615 13.67 0.00 33.64 2.24
2293 3008 7.172190 TGCATTGAAGTCTTCTTTCTCACTAAG 59.828 37.037 13.67 0.00 33.64 2.18
2294 3009 7.517321 CATTGAAGTCTTCTTTCTCACTAAGC 58.483 38.462 13.67 0.00 33.64 3.09
2295 3010 5.542779 TGAAGTCTTCTTTCTCACTAAGCC 58.457 41.667 13.67 0.00 33.64 4.35
2296 3011 5.070446 TGAAGTCTTCTTTCTCACTAAGCCA 59.930 40.000 13.67 0.00 33.64 4.75
2297 3012 5.753721 AGTCTTCTTTCTCACTAAGCCAT 57.246 39.130 0.00 0.00 0.00 4.40
2298 3013 5.729510 AGTCTTCTTTCTCACTAAGCCATC 58.270 41.667 0.00 0.00 0.00 3.51
2299 3014 4.873259 GTCTTCTTTCTCACTAAGCCATCC 59.127 45.833 0.00 0.00 0.00 3.51
2300 3015 3.914426 TCTTTCTCACTAAGCCATCCC 57.086 47.619 0.00 0.00 0.00 3.85
2301 3016 3.181329 TCTTTCTCACTAAGCCATCCCA 58.819 45.455 0.00 0.00 0.00 4.37
2302 3017 3.587061 TCTTTCTCACTAAGCCATCCCAA 59.413 43.478 0.00 0.00 0.00 4.12
2303 3018 4.042809 TCTTTCTCACTAAGCCATCCCAAA 59.957 41.667 0.00 0.00 0.00 3.28
2304 3019 4.591321 TTCTCACTAAGCCATCCCAAAT 57.409 40.909 0.00 0.00 0.00 2.32
2305 3020 4.156455 TCTCACTAAGCCATCCCAAATC 57.844 45.455 0.00 0.00 0.00 2.17
2306 3021 3.117888 TCTCACTAAGCCATCCCAAATCC 60.118 47.826 0.00 0.00 0.00 3.01
2307 3022 1.949525 CACTAAGCCATCCCAAATCCG 59.050 52.381 0.00 0.00 0.00 4.18
2308 3023 0.954452 CTAAGCCATCCCAAATCCGC 59.046 55.000 0.00 0.00 0.00 5.54
2309 3024 0.467290 TAAGCCATCCCAAATCCGCC 60.467 55.000 0.00 0.00 0.00 6.13
2310 3025 2.441901 GCCATCCCAAATCCGCCA 60.442 61.111 0.00 0.00 0.00 5.69
2311 3026 2.785425 GCCATCCCAAATCCGCCAC 61.785 63.158 0.00 0.00 0.00 5.01
2312 3027 1.379710 CCATCCCAAATCCGCCACA 60.380 57.895 0.00 0.00 0.00 4.17
2313 3028 0.756442 CCATCCCAAATCCGCCACAT 60.756 55.000 0.00 0.00 0.00 3.21
2314 3029 1.478471 CCATCCCAAATCCGCCACATA 60.478 52.381 0.00 0.00 0.00 2.29
2315 3030 2.305928 CATCCCAAATCCGCCACATAA 58.694 47.619 0.00 0.00 0.00 1.90
2316 3031 2.051334 TCCCAAATCCGCCACATAAG 57.949 50.000 0.00 0.00 0.00 1.73
2317 3032 0.385390 CCCAAATCCGCCACATAAGC 59.615 55.000 0.00 0.00 0.00 3.09
2327 3042 2.821546 GCCACATAAGCGAGTCATACA 58.178 47.619 0.00 0.00 0.00 2.29
2328 3043 3.393800 GCCACATAAGCGAGTCATACAT 58.606 45.455 0.00 0.00 0.00 2.29
2329 3044 3.809832 GCCACATAAGCGAGTCATACATT 59.190 43.478 0.00 0.00 0.00 2.71
2330 3045 4.273480 GCCACATAAGCGAGTCATACATTT 59.727 41.667 0.00 0.00 0.00 2.32
2331 3046 5.465390 GCCACATAAGCGAGTCATACATTTA 59.535 40.000 0.00 0.00 0.00 1.40
2332 3047 6.018262 GCCACATAAGCGAGTCATACATTTAA 60.018 38.462 0.00 0.00 0.00 1.52
2333 3048 7.345192 CCACATAAGCGAGTCATACATTTAAC 58.655 38.462 0.00 0.00 0.00 2.01
2334 3049 7.224753 CCACATAAGCGAGTCATACATTTAACT 59.775 37.037 0.00 0.00 0.00 2.24
2335 3050 8.604035 CACATAAGCGAGTCATACATTTAACTT 58.396 33.333 0.00 0.00 0.00 2.66
2336 3051 9.811995 ACATAAGCGAGTCATACATTTAACTTA 57.188 29.630 0.00 0.00 0.00 2.24
2381 3096 5.991328 TTAGTCTATGCATGTAAAGCTGC 57.009 39.130 10.16 0.00 38.87 5.25
2382 3097 3.209410 AGTCTATGCATGTAAAGCTGCC 58.791 45.455 10.16 0.00 37.59 4.85
2383 3098 2.945008 GTCTATGCATGTAAAGCTGCCA 59.055 45.455 10.16 0.00 37.59 4.92
2384 3099 2.945008 TCTATGCATGTAAAGCTGCCAC 59.055 45.455 10.16 0.00 37.59 5.01
2385 3100 1.548081 ATGCATGTAAAGCTGCCACA 58.452 45.000 0.00 0.00 37.59 4.17
2386 3101 1.548081 TGCATGTAAAGCTGCCACAT 58.452 45.000 0.00 0.98 37.59 3.21
2387 3102 1.473677 TGCATGTAAAGCTGCCACATC 59.526 47.619 8.61 5.96 37.59 3.06
2388 3103 1.473677 GCATGTAAAGCTGCCACATCA 59.526 47.619 8.61 0.00 30.59 3.07
2389 3104 2.100252 GCATGTAAAGCTGCCACATCAT 59.900 45.455 8.61 0.62 30.59 2.45
2390 3105 3.316029 GCATGTAAAGCTGCCACATCATA 59.684 43.478 8.61 0.00 30.59 2.15
2391 3106 4.022589 GCATGTAAAGCTGCCACATCATAT 60.023 41.667 8.61 0.00 30.59 1.78
2392 3107 5.181811 GCATGTAAAGCTGCCACATCATATA 59.818 40.000 8.61 0.00 30.59 0.86
2393 3108 6.127814 GCATGTAAAGCTGCCACATCATATAT 60.128 38.462 8.61 0.00 30.59 0.86
2394 3109 7.576287 GCATGTAAAGCTGCCACATCATATATT 60.576 37.037 8.61 0.00 30.59 1.28
2395 3110 7.439157 TGTAAAGCTGCCACATCATATATTC 57.561 36.000 0.00 0.00 0.00 1.75
2396 3111 6.997476 TGTAAAGCTGCCACATCATATATTCA 59.003 34.615 0.00 0.00 0.00 2.57
2397 3112 7.666804 TGTAAAGCTGCCACATCATATATTCAT 59.333 33.333 0.00 0.00 0.00 2.57
2398 3113 6.510879 AAGCTGCCACATCATATATTCATG 57.489 37.500 0.00 0.00 0.00 3.07
2399 3114 5.567430 AGCTGCCACATCATATATTCATGT 58.433 37.500 0.00 2.37 0.00 3.21
2400 3115 6.008331 AGCTGCCACATCATATATTCATGTT 58.992 36.000 0.00 0.00 0.00 2.71
2401 3116 7.170277 AGCTGCCACATCATATATTCATGTTA 58.830 34.615 0.00 0.00 0.00 2.41
2402 3117 7.336176 AGCTGCCACATCATATATTCATGTTAG 59.664 37.037 0.00 5.64 0.00 2.34
2403 3118 7.120285 GCTGCCACATCATATATTCATGTTAGT 59.880 37.037 4.82 0.00 0.00 2.24
2404 3119 8.552083 TGCCACATCATATATTCATGTTAGTC 57.448 34.615 4.82 0.00 0.00 2.59
2405 3120 8.156165 TGCCACATCATATATTCATGTTAGTCA 58.844 33.333 4.82 0.56 0.00 3.41
2406 3121 9.170734 GCCACATCATATATTCATGTTAGTCAT 57.829 33.333 4.82 0.00 37.22 3.06
2424 3139 9.490663 GTTAGTCATCCTTCATATTTTTGTTCG 57.509 33.333 0.00 0.00 0.00 3.95
2425 3140 7.921786 AGTCATCCTTCATATTTTTGTTCGA 57.078 32.000 0.00 0.00 0.00 3.71
2426 3141 8.335532 AGTCATCCTTCATATTTTTGTTCGAA 57.664 30.769 0.00 0.00 0.00 3.71
2427 3142 8.792633 AGTCATCCTTCATATTTTTGTTCGAAA 58.207 29.630 0.00 0.00 0.00 3.46
2428 3143 9.573133 GTCATCCTTCATATTTTTGTTCGAAAT 57.427 29.630 0.00 0.00 0.00 2.17
2429 3144 9.571810 TCATCCTTCATATTTTTGTTCGAAATG 57.428 29.630 0.00 0.00 0.00 2.32
2430 3145 9.571810 CATCCTTCATATTTTTGTTCGAAATGA 57.428 29.630 0.00 0.40 0.00 2.57
2431 3146 8.964420 TCCTTCATATTTTTGTTCGAAATGAC 57.036 30.769 0.00 0.00 0.00 3.06
2432 3147 8.572185 TCCTTCATATTTTTGTTCGAAATGACA 58.428 29.630 0.00 0.00 0.00 3.58
2433 3148 9.357652 CCTTCATATTTTTGTTCGAAATGACAT 57.642 29.630 0.00 0.00 0.00 3.06
2544 3259 7.170240 AGTTACTTTTGTCAACTACTTACGC 57.830 36.000 0.00 0.00 30.89 4.42
2545 3260 6.757947 AGTTACTTTTGTCAACTACTTACGCA 59.242 34.615 0.00 0.00 30.89 5.24
2546 3261 7.440255 AGTTACTTTTGTCAACTACTTACGCAT 59.560 33.333 0.00 0.00 30.89 4.73
2547 3262 8.702438 GTTACTTTTGTCAACTACTTACGCATA 58.298 33.333 0.00 0.00 0.00 3.14
2548 3263 7.900782 ACTTTTGTCAACTACTTACGCATAT 57.099 32.000 0.00 0.00 0.00 1.78
2549 3264 8.319143 ACTTTTGTCAACTACTTACGCATATT 57.681 30.769 0.00 0.00 0.00 1.28
2550 3265 8.780249 ACTTTTGTCAACTACTTACGCATATTT 58.220 29.630 0.00 0.00 0.00 1.40
2555 3270 9.205719 TGTCAACTACTTACGCATATTTAAACA 57.794 29.630 0.00 0.00 0.00 2.83
2559 3274 9.550811 AACTACTTACGCATATTTAAACAAAGC 57.449 29.630 0.00 0.00 0.00 3.51
2560 3275 8.943002 ACTACTTACGCATATTTAAACAAAGCT 58.057 29.630 0.00 0.00 0.00 3.74
2563 3278 8.179615 ACTTACGCATATTTAAACAAAGCTACC 58.820 33.333 0.00 0.00 0.00 3.18
2564 3279 5.565695 ACGCATATTTAAACAAAGCTACCG 58.434 37.500 0.00 0.00 0.00 4.02
2565 3280 4.436523 CGCATATTTAAACAAAGCTACCGC 59.563 41.667 0.00 0.00 0.00 5.68
2566 3281 5.336744 GCATATTTAAACAAAGCTACCGCA 58.663 37.500 0.00 0.00 39.10 5.69
2567 3282 5.802956 GCATATTTAAACAAAGCTACCGCAA 59.197 36.000 0.00 0.00 39.10 4.85
2568 3283 6.237463 GCATATTTAAACAAAGCTACCGCAAC 60.237 38.462 0.00 0.00 39.10 4.17
2569 3284 4.634184 TTTAAACAAAGCTACCGCAACA 57.366 36.364 0.00 0.00 39.10 3.33
2570 3285 4.634184 TTAAACAAAGCTACCGCAACAA 57.366 36.364 0.00 0.00 39.10 2.83
2571 3286 2.485266 AACAAAGCTACCGCAACAAC 57.515 45.000 0.00 0.00 39.10 3.32
2572 3287 0.306533 ACAAAGCTACCGCAACAACG 59.693 50.000 0.00 0.00 39.10 4.10
2573 3288 0.996727 CAAAGCTACCGCAACAACGC 60.997 55.000 0.00 0.00 39.10 4.84
2581 3296 3.423154 GCAACAACGCGGGGAGAG 61.423 66.667 12.47 0.00 0.00 3.20
2582 3297 2.342279 CAACAACGCGGGGAGAGA 59.658 61.111 12.47 0.00 0.00 3.10
2583 3298 1.738099 CAACAACGCGGGGAGAGAG 60.738 63.158 12.47 0.00 0.00 3.20
2584 3299 2.207924 AACAACGCGGGGAGAGAGT 61.208 57.895 12.47 0.00 0.00 3.24
2585 3300 2.156051 AACAACGCGGGGAGAGAGTC 62.156 60.000 12.47 0.00 0.00 3.36
2586 3301 2.282958 AACGCGGGGAGAGAGTCA 60.283 61.111 12.47 0.00 0.00 3.41
2587 3302 1.682684 AACGCGGGGAGAGAGTCAT 60.683 57.895 12.47 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 5.257082 ACGCTGGTTGTTTATCTTGTTTT 57.743 34.783 0.00 0.00 0.00 2.43
71 72 4.911514 ACGCTGGTTGTTTATCTTGTTT 57.088 36.364 0.00 0.00 0.00 2.83
90 91 3.429543 CCAGTTTGGATCAAAATGCAACG 59.570 43.478 13.24 0.00 44.55 4.10
94 95 3.244976 CGACCAGTTTGGATCAAAATGC 58.755 45.455 13.24 3.08 44.55 3.56
95 96 3.367292 CCCGACCAGTTTGGATCAAAATG 60.367 47.826 12.14 12.14 45.18 2.32
113 114 1.885887 CATTTTCACTTTGGCTCCCGA 59.114 47.619 0.00 0.00 0.00 5.14
121 122 2.871633 GTGGCAACCCATTTTCACTTTG 59.128 45.455 0.00 0.00 44.51 2.77
146 147 2.352651 GTCGCAGCATCATTGTATGTGT 59.647 45.455 0.00 0.00 0.00 3.72
211 212 3.547054 AAAACTAGTGTCCCGTTCACA 57.453 42.857 0.00 0.00 38.16 3.58
217 218 1.406477 GCCCCTAAAACTAGTGTCCCG 60.406 57.143 0.00 0.00 0.00 5.14
456 466 8.032451 CCGGACATTGTTTTGGAAGTTATAAAT 58.968 33.333 0.00 0.00 0.00 1.40
459 469 5.416326 CCCGGACATTGTTTTGGAAGTTATA 59.584 40.000 0.73 0.00 0.00 0.98
479 489 0.751643 AGGAATTTTCATCCGCCCGG 60.752 55.000 0.00 0.00 42.03 5.73
551 562 9.907576 TTTTACATTACGCAAACATTTTCTTTG 57.092 25.926 0.00 0.00 0.00 2.77
619 630 7.712204 AATGGTATGAAAACGGGAGTATTTT 57.288 32.000 0.00 0.00 46.69 1.82
623 634 8.513774 GTTTTTAATGGTATGAAAACGGGAGTA 58.486 33.333 0.00 0.00 46.69 2.59
769 1098 5.582665 CCCAACATTTTGTTTCTTTTTCGGA 59.417 36.000 0.00 0.00 38.77 4.55
772 1101 7.914871 CCATTCCCAACATTTTGTTTCTTTTTC 59.085 33.333 0.00 0.00 38.77 2.29
782 1111 3.405823 ACTGCCATTCCCAACATTTTG 57.594 42.857 0.00 0.00 0.00 2.44
783 1112 3.136260 ACAACTGCCATTCCCAACATTTT 59.864 39.130 0.00 0.00 0.00 1.82
787 1116 1.039068 CACAACTGCCATTCCCAACA 58.961 50.000 0.00 0.00 0.00 3.33
788 1117 0.318120 CCACAACTGCCATTCCCAAC 59.682 55.000 0.00 0.00 0.00 3.77
789 1118 1.470996 GCCACAACTGCCATTCCCAA 61.471 55.000 0.00 0.00 0.00 4.12
790 1119 1.907807 GCCACAACTGCCATTCCCA 60.908 57.895 0.00 0.00 0.00 4.37
791 1120 2.973082 GCCACAACTGCCATTCCC 59.027 61.111 0.00 0.00 0.00 3.97
792 1121 1.315257 ATCGCCACAACTGCCATTCC 61.315 55.000 0.00 0.00 0.00 3.01
793 1122 0.179156 CATCGCCACAACTGCCATTC 60.179 55.000 0.00 0.00 0.00 2.67
794 1123 0.608856 TCATCGCCACAACTGCCATT 60.609 50.000 0.00 0.00 0.00 3.16
837 1509 4.712476 GCCCTATGCTGATATAGATTGGG 58.288 47.826 0.00 0.00 34.89 4.12
874 1546 3.011119 AGTAGTTTGTTTGGTTCGTGCA 58.989 40.909 0.00 0.00 0.00 4.57
878 1550 3.800506 AGACGAGTAGTTTGTTTGGTTCG 59.199 43.478 0.00 0.00 0.00 3.95
886 1558 2.292569 TCAAGCGAGACGAGTAGTTTGT 59.707 45.455 0.00 0.00 0.00 2.83
934 1606 3.713764 CTCTCTCTCTCTCTCCTCCTCTT 59.286 52.174 0.00 0.00 0.00 2.85
941 1613 3.738281 CGTGTCTCTCTCTCTCTCTCTCC 60.738 56.522 0.00 0.00 0.00 3.71
960 1636 5.635549 TCGTAAGTTTGATATGATGCGTG 57.364 39.130 0.00 0.00 39.48 5.34
981 1657 3.499737 CACAGGGCGCGGTCAATC 61.500 66.667 8.83 0.00 0.00 2.67
991 1667 2.903855 CCGATCCATGCACAGGGC 60.904 66.667 7.15 0.00 45.13 5.19
992 1668 2.903855 GCCGATCCATGCACAGGG 60.904 66.667 7.15 0.00 0.00 4.45
1020 1696 3.684990 ACGCGCAGGAGAAGCAGA 61.685 61.111 5.73 0.00 0.00 4.26
1078 1754 4.749310 CTCCTGCTCCAGCGCGTT 62.749 66.667 8.43 0.00 45.83 4.84
1155 1831 1.513586 CGTGTACTCTTCCGCCGAC 60.514 63.158 0.00 0.00 0.00 4.79
1237 1913 3.777925 CACGAAGCGCTGGAACCG 61.778 66.667 12.58 12.54 0.00 4.44
1533 2211 2.705220 CGTGCGTATCGTCGGAGA 59.295 61.111 0.00 0.00 0.00 3.71
1654 2343 7.712639 AGAATTCGAACATCTAAGTACATGCAT 59.287 33.333 12.32 0.00 0.00 3.96
1762 2474 9.093970 CTTTACATCATCAATGCACATCATTTT 57.906 29.630 0.00 0.00 42.48 1.82
1763 2475 8.255206 ACTTTACATCATCAATGCACATCATTT 58.745 29.630 0.00 0.00 42.48 2.32
1764 2476 7.704899 CACTTTACATCATCAATGCACATCATT 59.295 33.333 0.00 0.00 45.82 2.57
1772 2484 3.795101 GCTGCACTTTACATCATCAATGC 59.205 43.478 0.00 0.00 39.12 3.56
1773 2485 5.244785 AGCTGCACTTTACATCATCAATG 57.755 39.130 1.02 0.00 41.48 2.82
1776 2488 3.273434 GGAGCTGCACTTTACATCATCA 58.727 45.455 0.00 0.00 0.00 3.07
1778 2490 2.025981 TGGGAGCTGCACTTTACATCAT 60.026 45.455 7.79 0.00 0.00 2.45
1784 2496 4.854173 TCATTTATGGGAGCTGCACTTTA 58.146 39.130 7.79 0.00 0.00 1.85
1793 2506 9.507329 TCTCTAATTTGTATCATTTATGGGAGC 57.493 33.333 0.00 0.00 0.00 4.70
1921 2635 8.407064 CCTCGAATGATGAGTAGTTTAACTAGT 58.593 37.037 11.79 11.79 37.08 2.57
1925 2639 5.234543 GCCCTCGAATGATGAGTAGTTTAAC 59.765 44.000 0.00 0.00 0.00 2.01
1937 2652 1.135094 ACTGGATGCCCTCGAATGAT 58.865 50.000 0.00 0.00 0.00 2.45
1938 2653 1.412710 GTACTGGATGCCCTCGAATGA 59.587 52.381 0.00 0.00 0.00 2.57
1940 2655 1.689273 GAGTACTGGATGCCCTCGAAT 59.311 52.381 0.00 0.00 0.00 3.34
1942 2657 1.101635 CGAGTACTGGATGCCCTCGA 61.102 60.000 0.00 0.00 45.81 4.04
1945 2660 2.154567 TAACGAGTACTGGATGCCCT 57.845 50.000 12.28 0.00 0.00 5.19
1948 2663 3.802685 GGACAATAACGAGTACTGGATGC 59.197 47.826 12.28 0.00 0.00 3.91
1954 2669 5.421056 TCCAATGAGGACAATAACGAGTACT 59.579 40.000 0.00 0.00 43.07 2.73
1975 2690 2.868566 AATTGTGGGGGCCCTCCA 60.869 61.111 22.40 23.33 37.22 3.86
1977 2692 2.042944 GGAATTGTGGGGGCCCTC 60.043 66.667 24.38 21.26 36.94 4.30
1988 2703 2.770164 AGGAGGACGACAAGGAATTG 57.230 50.000 0.00 0.00 0.00 2.32
2006 2721 3.923461 GTGAAGAATGTGAGTCCTCGAAG 59.077 47.826 0.00 0.00 0.00 3.79
2007 2722 3.306088 GGTGAAGAATGTGAGTCCTCGAA 60.306 47.826 0.00 0.00 0.00 3.71
2009 2724 2.029020 TGGTGAAGAATGTGAGTCCTCG 60.029 50.000 0.00 0.00 0.00 4.63
2010 2725 3.330267 GTGGTGAAGAATGTGAGTCCTC 58.670 50.000 0.00 0.00 0.00 3.71
2011 2726 2.039084 GGTGGTGAAGAATGTGAGTCCT 59.961 50.000 0.00 0.00 0.00 3.85
2013 2728 3.409026 AGGTGGTGAAGAATGTGAGTC 57.591 47.619 0.00 0.00 0.00 3.36
2014 2729 3.392616 AGAAGGTGGTGAAGAATGTGAGT 59.607 43.478 0.00 0.00 0.00 3.41
2015 2730 4.013267 AGAAGGTGGTGAAGAATGTGAG 57.987 45.455 0.00 0.00 0.00 3.51
2016 2731 4.103153 AGAAGAAGGTGGTGAAGAATGTGA 59.897 41.667 0.00 0.00 0.00 3.58
2017 2732 4.214971 CAGAAGAAGGTGGTGAAGAATGTG 59.785 45.833 0.00 0.00 0.00 3.21
2018 2733 4.392940 CAGAAGAAGGTGGTGAAGAATGT 58.607 43.478 0.00 0.00 0.00 2.71
2019 2734 3.190118 GCAGAAGAAGGTGGTGAAGAATG 59.810 47.826 0.00 0.00 0.00 2.67
2020 2735 3.073650 AGCAGAAGAAGGTGGTGAAGAAT 59.926 43.478 0.00 0.00 0.00 2.40
2021 2736 2.439507 AGCAGAAGAAGGTGGTGAAGAA 59.560 45.455 0.00 0.00 0.00 2.52
2022 2737 2.037772 GAGCAGAAGAAGGTGGTGAAGA 59.962 50.000 0.00 0.00 0.00 2.87
2023 2738 2.421619 GAGCAGAAGAAGGTGGTGAAG 58.578 52.381 0.00 0.00 0.00 3.02
2024 2739 1.270305 CGAGCAGAAGAAGGTGGTGAA 60.270 52.381 0.00 0.00 0.00 3.18
2025 2740 0.318441 CGAGCAGAAGAAGGTGGTGA 59.682 55.000 0.00 0.00 0.00 4.02
2026 2741 0.671781 CCGAGCAGAAGAAGGTGGTG 60.672 60.000 0.00 0.00 0.00 4.17
2027 2742 1.674057 CCGAGCAGAAGAAGGTGGT 59.326 57.895 0.00 0.00 0.00 4.16
2028 2743 1.743252 GCCGAGCAGAAGAAGGTGG 60.743 63.158 0.00 0.00 0.00 4.61
2029 2744 1.743252 GGCCGAGCAGAAGAAGGTG 60.743 63.158 0.00 0.00 0.00 4.00
2030 2745 1.893919 GAGGCCGAGCAGAAGAAGGT 61.894 60.000 0.00 0.00 0.00 3.50
2031 2746 1.153469 GAGGCCGAGCAGAAGAAGG 60.153 63.158 0.00 0.00 0.00 3.46
2032 2747 1.518133 CGAGGCCGAGCAGAAGAAG 60.518 63.158 0.00 0.00 38.22 2.85
2033 2748 2.573869 CGAGGCCGAGCAGAAGAA 59.426 61.111 0.00 0.00 38.22 2.52
2034 2749 4.135153 GCGAGGCCGAGCAGAAGA 62.135 66.667 18.51 0.00 38.22 2.87
2044 2759 2.742372 TTCTGAAAGCGCGAGGCC 60.742 61.111 12.10 0.00 45.17 5.19
2045 2760 0.736325 TACTTCTGAAAGCGCGAGGC 60.736 55.000 12.10 0.00 44.05 4.70
2046 2761 1.272781 CTACTTCTGAAAGCGCGAGG 58.727 55.000 12.10 0.00 35.81 4.63
2047 2762 1.914700 GACTACTTCTGAAAGCGCGAG 59.085 52.381 12.10 0.00 35.81 5.03
2048 2763 1.402456 GGACTACTTCTGAAAGCGCGA 60.402 52.381 12.10 0.00 35.81 5.87
2049 2764 0.992802 GGACTACTTCTGAAAGCGCG 59.007 55.000 0.00 0.00 35.81 6.86
2050 2765 2.371910 AGGACTACTTCTGAAAGCGC 57.628 50.000 0.00 0.00 35.81 5.92
2051 2766 4.664188 GAGTAGGACTACTTCTGAAAGCG 58.336 47.826 12.84 0.00 45.63 4.68
2052 2767 4.439016 CCGAGTAGGACTACTTCTGAAAGC 60.439 50.000 12.84 0.00 45.63 3.51
2053 2768 4.439016 GCCGAGTAGGACTACTTCTGAAAG 60.439 50.000 12.84 0.00 45.63 2.62
2054 2769 3.442977 GCCGAGTAGGACTACTTCTGAAA 59.557 47.826 12.84 0.00 45.63 2.69
2055 2770 3.015327 GCCGAGTAGGACTACTTCTGAA 58.985 50.000 12.84 0.00 45.63 3.02
2056 2771 2.641305 GCCGAGTAGGACTACTTCTGA 58.359 52.381 12.84 0.00 45.63 3.27
2066 2781 0.035152 TACGTTCAGGCCGAGTAGGA 60.035 55.000 0.00 0.00 45.00 2.94
2067 2782 0.100146 GTACGTTCAGGCCGAGTAGG 59.900 60.000 0.00 0.00 44.97 3.18
2068 2783 1.093159 AGTACGTTCAGGCCGAGTAG 58.907 55.000 0.00 0.00 0.00 2.57
2069 2784 2.401583 TAGTACGTTCAGGCCGAGTA 57.598 50.000 0.00 0.00 0.00 2.59
2070 2785 1.404391 CATAGTACGTTCAGGCCGAGT 59.596 52.381 0.00 0.00 0.00 4.18
2071 2786 1.269102 CCATAGTACGTTCAGGCCGAG 60.269 57.143 0.00 0.00 0.00 4.63
2072 2787 0.742505 CCATAGTACGTTCAGGCCGA 59.257 55.000 0.00 0.00 0.00 5.54
2073 2788 0.458669 ACCATAGTACGTTCAGGCCG 59.541 55.000 0.00 0.00 0.00 6.13
2074 2789 2.685850 AACCATAGTACGTTCAGGCC 57.314 50.000 0.00 0.00 0.00 5.19
2075 2790 6.673154 AAAATAACCATAGTACGTTCAGGC 57.327 37.500 0.00 0.00 0.00 4.85
2076 2791 6.964934 GCAAAAATAACCATAGTACGTTCAGG 59.035 38.462 0.00 0.00 0.00 3.86
2077 2792 7.523219 TGCAAAAATAACCATAGTACGTTCAG 58.477 34.615 0.00 0.00 0.00 3.02
2078 2793 7.436430 TGCAAAAATAACCATAGTACGTTCA 57.564 32.000 0.00 0.00 0.00 3.18
2079 2794 8.395633 AGATGCAAAAATAACCATAGTACGTTC 58.604 33.333 0.00 0.00 0.00 3.95
2080 2795 8.276252 AGATGCAAAAATAACCATAGTACGTT 57.724 30.769 0.00 0.00 0.00 3.99
2081 2796 7.859325 AGATGCAAAAATAACCATAGTACGT 57.141 32.000 0.00 0.00 0.00 3.57
2082 2797 8.822855 TGTAGATGCAAAAATAACCATAGTACG 58.177 33.333 0.00 0.00 0.00 3.67
2101 2816 9.877137 GAGCATCTCGTATAGATAATGTAGATG 57.123 37.037 0.00 0.00 43.42 2.90
2121 2836 4.115516 TGCATTCGTCTCTTTAGAGCATC 58.884 43.478 1.79 0.00 41.80 3.91
2122 2837 4.128925 TGCATTCGTCTCTTTAGAGCAT 57.871 40.909 1.79 0.00 41.80 3.79
2123 2838 3.592898 TGCATTCGTCTCTTTAGAGCA 57.407 42.857 1.79 0.00 41.80 4.26
2124 2839 5.285651 ACTATGCATTCGTCTCTTTAGAGC 58.714 41.667 3.54 0.00 41.80 4.09
2125 2840 7.763172 AAACTATGCATTCGTCTCTTTAGAG 57.237 36.000 3.54 0.15 43.36 2.43
2126 2841 9.647797 TTTAAACTATGCATTCGTCTCTTTAGA 57.352 29.630 3.54 0.00 0.00 2.10
2152 2867 9.987272 TCATGACATGTCGATCTATCTAAAATT 57.013 29.630 20.54 0.00 0.00 1.82
2154 2869 9.415544 CATCATGACATGTCGATCTATCTAAAA 57.584 33.333 20.54 0.00 0.00 1.52
2155 2870 8.579863 ACATCATGACATGTCGATCTATCTAAA 58.420 33.333 20.54 0.00 30.76 1.85
2156 2871 8.025445 CACATCATGACATGTCGATCTATCTAA 58.975 37.037 20.54 0.00 34.60 2.10
2157 2872 7.175641 ACACATCATGACATGTCGATCTATCTA 59.824 37.037 20.54 0.20 34.60 1.98
2158 2873 6.015603 ACACATCATGACATGTCGATCTATCT 60.016 38.462 20.54 0.00 34.60 1.98
2159 2874 6.089150 CACACATCATGACATGTCGATCTATC 59.911 42.308 20.54 0.00 34.60 2.08
2160 2875 5.924825 CACACATCATGACATGTCGATCTAT 59.075 40.000 20.54 5.61 34.60 1.98
2161 2876 5.163519 ACACACATCATGACATGTCGATCTA 60.164 40.000 20.54 3.25 34.60 1.98
2162 2877 4.117685 CACACATCATGACATGTCGATCT 58.882 43.478 20.54 3.82 34.60 2.75
2163 2878 3.867493 ACACACATCATGACATGTCGATC 59.133 43.478 20.54 0.00 34.60 3.69
2164 2879 3.865446 ACACACATCATGACATGTCGAT 58.135 40.909 20.54 14.64 34.60 3.59
2165 2880 3.317603 ACACACATCATGACATGTCGA 57.682 42.857 20.54 13.00 34.60 4.20
2166 2881 5.723492 ATTACACACATCATGACATGTCG 57.277 39.130 20.54 7.83 34.60 4.35
2167 2882 7.973601 TGTAATTACACACATCATGACATGTC 58.026 34.615 19.27 19.27 34.60 3.06
2168 2883 7.920160 TGTAATTACACACATCATGACATGT 57.080 32.000 14.35 0.00 37.49 3.21
2169 2884 9.791820 ATTTGTAATTACACACATCATGACATG 57.208 29.630 17.85 9.28 35.64 3.21
2171 2886 9.230122 AGATTTGTAATTACACACATCATGACA 57.770 29.630 17.85 0.00 37.84 3.58
2194 2909 8.803235 GGGACCAACTTCTTAAAAATGTAAGAT 58.197 33.333 0.00 0.00 39.31 2.40
2195 2910 7.780745 TGGGACCAACTTCTTAAAAATGTAAGA 59.219 33.333 0.00 0.00 38.14 2.10
2196 2911 7.947282 TGGGACCAACTTCTTAAAAATGTAAG 58.053 34.615 0.00 0.00 33.16 2.34
2197 2912 7.899648 TGGGACCAACTTCTTAAAAATGTAA 57.100 32.000 0.00 0.00 0.00 2.41
2198 2913 7.899648 TTGGGACCAACTTCTTAAAAATGTA 57.100 32.000 0.00 0.00 0.00 2.29
2199 2914 6.800072 TTGGGACCAACTTCTTAAAAATGT 57.200 33.333 0.00 0.00 0.00 2.71
2200 2915 8.150296 AGAATTGGGACCAACTTCTTAAAAATG 58.850 33.333 5.82 0.00 38.88 2.32
2201 2916 8.262601 AGAATTGGGACCAACTTCTTAAAAAT 57.737 30.769 5.82 0.00 38.88 1.82
2202 2917 7.563556 AGAGAATTGGGACCAACTTCTTAAAAA 59.436 33.333 19.91 0.00 38.88 1.94
2203 2918 7.066781 AGAGAATTGGGACCAACTTCTTAAAA 58.933 34.615 19.91 0.00 38.88 1.52
2204 2919 6.610830 AGAGAATTGGGACCAACTTCTTAAA 58.389 36.000 19.91 0.00 38.88 1.52
2205 2920 6.183361 TGAGAGAATTGGGACCAACTTCTTAA 60.183 38.462 19.91 11.82 38.88 1.85
2206 2921 5.309543 TGAGAGAATTGGGACCAACTTCTTA 59.690 40.000 19.91 12.31 38.88 2.10
2207 2922 4.104738 TGAGAGAATTGGGACCAACTTCTT 59.895 41.667 19.91 8.17 38.88 2.52
2208 2923 3.652869 TGAGAGAATTGGGACCAACTTCT 59.347 43.478 19.43 19.43 38.88 2.85
2209 2924 4.021102 TGAGAGAATTGGGACCAACTTC 57.979 45.455 5.82 10.92 38.88 3.01
2210 2925 4.145052 GTTGAGAGAATTGGGACCAACTT 58.855 43.478 5.82 2.59 38.88 2.66
2211 2926 3.138283 TGTTGAGAGAATTGGGACCAACT 59.862 43.478 5.82 0.00 38.88 3.16
2212 2927 3.486383 TGTTGAGAGAATTGGGACCAAC 58.514 45.455 5.82 0.00 38.88 3.77
2213 2928 3.874383 TGTTGAGAGAATTGGGACCAA 57.126 42.857 6.20 6.20 40.47 3.67
2214 2929 4.288366 TGTATGTTGAGAGAATTGGGACCA 59.712 41.667 0.00 0.00 0.00 4.02
2215 2930 4.843728 TGTATGTTGAGAGAATTGGGACC 58.156 43.478 0.00 0.00 0.00 4.46
2216 2931 6.431234 ACTTTGTATGTTGAGAGAATTGGGAC 59.569 38.462 0.00 0.00 0.00 4.46
2217 2932 6.430925 CACTTTGTATGTTGAGAGAATTGGGA 59.569 38.462 0.00 0.00 0.00 4.37
2218 2933 6.207417 ACACTTTGTATGTTGAGAGAATTGGG 59.793 38.462 0.00 0.00 0.00 4.12
2219 2934 7.206981 ACACTTTGTATGTTGAGAGAATTGG 57.793 36.000 0.00 0.00 0.00 3.16
2220 2935 7.041167 TGGACACTTTGTATGTTGAGAGAATTG 60.041 37.037 0.00 0.00 0.00 2.32
2221 2936 6.998074 TGGACACTTTGTATGTTGAGAGAATT 59.002 34.615 0.00 0.00 0.00 2.17
2222 2937 6.428159 GTGGACACTTTGTATGTTGAGAGAAT 59.572 38.462 0.00 0.00 0.00 2.40
2223 2938 5.758296 GTGGACACTTTGTATGTTGAGAGAA 59.242 40.000 0.00 0.00 0.00 2.87
2224 2939 5.297547 GTGGACACTTTGTATGTTGAGAGA 58.702 41.667 0.00 0.00 0.00 3.10
2225 2940 4.452455 GGTGGACACTTTGTATGTTGAGAG 59.548 45.833 2.13 0.00 0.00 3.20
2226 2941 4.102524 AGGTGGACACTTTGTATGTTGAGA 59.897 41.667 2.13 0.00 0.00 3.27
2227 2942 4.389374 AGGTGGACACTTTGTATGTTGAG 58.611 43.478 2.13 0.00 0.00 3.02
2228 2943 4.141597 TGAGGTGGACACTTTGTATGTTGA 60.142 41.667 2.13 0.00 0.00 3.18
2229 2944 4.133820 TGAGGTGGACACTTTGTATGTTG 58.866 43.478 2.13 0.00 0.00 3.33
2230 2945 4.431416 TGAGGTGGACACTTTGTATGTT 57.569 40.909 2.13 0.00 0.00 2.71
2231 2946 4.134563 GTTGAGGTGGACACTTTGTATGT 58.865 43.478 2.13 0.00 0.00 2.29
2232 2947 3.186409 CGTTGAGGTGGACACTTTGTATG 59.814 47.826 2.13 0.00 0.00 2.39
2233 2948 3.181458 ACGTTGAGGTGGACACTTTGTAT 60.181 43.478 2.13 0.00 0.00 2.29
2234 2949 2.168936 ACGTTGAGGTGGACACTTTGTA 59.831 45.455 2.13 0.00 0.00 2.41
2235 2950 1.065709 ACGTTGAGGTGGACACTTTGT 60.066 47.619 2.13 0.00 0.00 2.83
2236 2951 1.597663 GACGTTGAGGTGGACACTTTG 59.402 52.381 2.13 0.00 0.00 2.77
2237 2952 1.474498 GGACGTTGAGGTGGACACTTT 60.474 52.381 2.13 0.00 0.00 2.66
2238 2953 0.106149 GGACGTTGAGGTGGACACTT 59.894 55.000 2.13 0.00 0.00 3.16
2239 2954 1.746517 GGACGTTGAGGTGGACACT 59.253 57.895 2.13 0.00 0.00 3.55
2240 2955 1.301479 GGGACGTTGAGGTGGACAC 60.301 63.158 0.00 0.00 0.00 3.67
2241 2956 1.125093 ATGGGACGTTGAGGTGGACA 61.125 55.000 0.00 0.00 0.00 4.02
2242 2957 0.036306 AATGGGACGTTGAGGTGGAC 59.964 55.000 0.00 0.00 0.00 4.02
2243 2958 1.646912 TAATGGGACGTTGAGGTGGA 58.353 50.000 0.00 0.00 0.00 4.02
2244 2959 2.027561 TCTTAATGGGACGTTGAGGTGG 60.028 50.000 0.00 0.00 0.00 4.61
2245 2960 3.328382 TCTTAATGGGACGTTGAGGTG 57.672 47.619 0.00 0.00 0.00 4.00
2246 2961 4.261801 CATTCTTAATGGGACGTTGAGGT 58.738 43.478 0.00 0.00 35.23 3.85
2247 2962 3.065371 GCATTCTTAATGGGACGTTGAGG 59.935 47.826 0.00 0.00 39.31 3.86
2248 2963 3.689161 TGCATTCTTAATGGGACGTTGAG 59.311 43.478 0.00 0.00 39.31 3.02
2249 2964 3.680490 TGCATTCTTAATGGGACGTTGA 58.320 40.909 0.00 0.00 39.31 3.18
2250 2965 4.637483 ATGCATTCTTAATGGGACGTTG 57.363 40.909 0.00 0.00 39.31 4.10
2251 2966 4.704540 TCAATGCATTCTTAATGGGACGTT 59.295 37.500 9.53 0.00 39.31 3.99
2252 2967 4.269183 TCAATGCATTCTTAATGGGACGT 58.731 39.130 9.53 0.00 39.31 4.34
2253 2968 4.898829 TCAATGCATTCTTAATGGGACG 57.101 40.909 9.53 0.00 39.31 4.79
2254 2969 6.096001 AGACTTCAATGCATTCTTAATGGGAC 59.904 38.462 9.53 0.00 39.31 4.46
2255 2970 6.189859 AGACTTCAATGCATTCTTAATGGGA 58.810 36.000 9.53 0.00 39.31 4.37
2256 2971 6.461110 AGACTTCAATGCATTCTTAATGGG 57.539 37.500 9.53 0.00 39.31 4.00
2257 2972 7.769220 AGAAGACTTCAATGCATTCTTAATGG 58.231 34.615 17.34 0.00 39.31 3.16
2258 2973 9.635520 AAAGAAGACTTCAATGCATTCTTAATG 57.364 29.630 17.34 0.00 36.31 1.90
2259 2974 9.852091 GAAAGAAGACTTCAATGCATTCTTAAT 57.148 29.630 17.34 0.00 36.31 1.40
2260 2975 9.071276 AGAAAGAAGACTTCAATGCATTCTTAA 57.929 29.630 17.34 3.72 36.31 1.85
2261 2976 8.627208 AGAAAGAAGACTTCAATGCATTCTTA 57.373 30.769 17.34 0.00 36.31 2.10
2262 2977 7.230108 TGAGAAAGAAGACTTCAATGCATTCTT 59.770 33.333 17.34 9.67 38.32 2.52
2263 2978 6.713903 TGAGAAAGAAGACTTCAATGCATTCT 59.286 34.615 17.34 14.19 35.05 2.40
2264 2979 6.800892 GTGAGAAAGAAGACTTCAATGCATTC 59.199 38.462 17.34 10.51 35.05 2.67
2265 2980 6.489361 AGTGAGAAAGAAGACTTCAATGCATT 59.511 34.615 17.34 5.99 35.05 3.56
2266 2981 6.002704 AGTGAGAAAGAAGACTTCAATGCAT 58.997 36.000 17.34 0.00 35.05 3.96
2267 2982 5.371526 AGTGAGAAAGAAGACTTCAATGCA 58.628 37.500 17.34 5.95 35.05 3.96
2268 2983 5.938438 AGTGAGAAAGAAGACTTCAATGC 57.062 39.130 17.34 4.62 35.05 3.56
2269 2984 7.360776 GGCTTAGTGAGAAAGAAGACTTCAATG 60.361 40.741 17.34 0.00 35.05 2.82
2270 2985 6.652900 GGCTTAGTGAGAAAGAAGACTTCAAT 59.347 38.462 17.34 5.29 35.05 2.57
2271 2986 5.992217 GGCTTAGTGAGAAAGAAGACTTCAA 59.008 40.000 17.34 0.00 35.05 2.69
2272 2987 5.070446 TGGCTTAGTGAGAAAGAAGACTTCA 59.930 40.000 17.34 0.00 35.05 3.02
2273 2988 5.542779 TGGCTTAGTGAGAAAGAAGACTTC 58.457 41.667 7.14 7.14 35.05 3.01
2274 2989 5.552870 TGGCTTAGTGAGAAAGAAGACTT 57.447 39.130 0.00 0.00 38.05 3.01
2275 2990 5.337975 GGATGGCTTAGTGAGAAAGAAGACT 60.338 44.000 0.00 0.00 0.00 3.24
2276 2991 4.873259 GGATGGCTTAGTGAGAAAGAAGAC 59.127 45.833 0.00 0.00 0.00 3.01
2277 2992 4.080863 GGGATGGCTTAGTGAGAAAGAAGA 60.081 45.833 0.00 0.00 0.00 2.87
2278 2993 4.195416 GGGATGGCTTAGTGAGAAAGAAG 58.805 47.826 0.00 0.00 0.00 2.85
2279 2994 3.587061 TGGGATGGCTTAGTGAGAAAGAA 59.413 43.478 0.00 0.00 0.00 2.52
2280 2995 3.181329 TGGGATGGCTTAGTGAGAAAGA 58.819 45.455 0.00 0.00 0.00 2.52
2281 2996 3.634397 TGGGATGGCTTAGTGAGAAAG 57.366 47.619 0.00 0.00 0.00 2.62
2282 2997 4.380843 TTTGGGATGGCTTAGTGAGAAA 57.619 40.909 0.00 0.00 0.00 2.52
2283 2998 4.526970 GATTTGGGATGGCTTAGTGAGAA 58.473 43.478 0.00 0.00 0.00 2.87
2284 2999 3.117888 GGATTTGGGATGGCTTAGTGAGA 60.118 47.826 0.00 0.00 0.00 3.27
2285 3000 3.217626 GGATTTGGGATGGCTTAGTGAG 58.782 50.000 0.00 0.00 0.00 3.51
2286 3001 2.421388 CGGATTTGGGATGGCTTAGTGA 60.421 50.000 0.00 0.00 0.00 3.41
2287 3002 1.949525 CGGATTTGGGATGGCTTAGTG 59.050 52.381 0.00 0.00 0.00 2.74
2288 3003 1.750682 GCGGATTTGGGATGGCTTAGT 60.751 52.381 0.00 0.00 0.00 2.24
2289 3004 0.954452 GCGGATTTGGGATGGCTTAG 59.046 55.000 0.00 0.00 0.00 2.18
2290 3005 0.467290 GGCGGATTTGGGATGGCTTA 60.467 55.000 0.00 0.00 0.00 3.09
2291 3006 1.758122 GGCGGATTTGGGATGGCTT 60.758 57.895 0.00 0.00 0.00 4.35
2292 3007 2.123726 GGCGGATTTGGGATGGCT 60.124 61.111 0.00 0.00 0.00 4.75
2293 3008 2.441901 TGGCGGATTTGGGATGGC 60.442 61.111 0.00 0.00 0.00 4.40
2294 3009 0.756442 ATGTGGCGGATTTGGGATGG 60.756 55.000 0.00 0.00 0.00 3.51
2295 3010 1.979855 TATGTGGCGGATTTGGGATG 58.020 50.000 0.00 0.00 0.00 3.51
2296 3011 2.586425 CTTATGTGGCGGATTTGGGAT 58.414 47.619 0.00 0.00 0.00 3.85
2297 3012 2.021723 GCTTATGTGGCGGATTTGGGA 61.022 52.381 0.00 0.00 0.00 4.37
2298 3013 0.385390 GCTTATGTGGCGGATTTGGG 59.615 55.000 0.00 0.00 0.00 4.12
2299 3014 3.944871 GCTTATGTGGCGGATTTGG 57.055 52.632 0.00 0.00 0.00 3.28
2307 3022 2.821546 TGTATGACTCGCTTATGTGGC 58.178 47.619 0.00 0.00 0.00 5.01
2308 3023 5.991328 AAATGTATGACTCGCTTATGTGG 57.009 39.130 0.00 0.00 0.00 4.17
2309 3024 8.131455 AGTTAAATGTATGACTCGCTTATGTG 57.869 34.615 0.00 0.00 0.00 3.21
2310 3025 8.718102 AAGTTAAATGTATGACTCGCTTATGT 57.282 30.769 0.00 0.00 0.00 2.29
2357 3072 6.369005 GCAGCTTTACATGCATAGACTAATG 58.631 40.000 0.00 0.00 42.11 1.90
2358 3073 5.471456 GGCAGCTTTACATGCATAGACTAAT 59.529 40.000 0.00 0.00 44.37 1.73
2359 3074 4.816385 GGCAGCTTTACATGCATAGACTAA 59.184 41.667 0.00 0.00 44.37 2.24
2360 3075 4.141733 TGGCAGCTTTACATGCATAGACTA 60.142 41.667 0.00 0.00 44.37 2.59
2361 3076 3.209410 GGCAGCTTTACATGCATAGACT 58.791 45.455 0.00 0.00 44.37 3.24
2362 3077 2.945008 TGGCAGCTTTACATGCATAGAC 59.055 45.455 0.00 0.00 44.37 2.59
2363 3078 2.945008 GTGGCAGCTTTACATGCATAGA 59.055 45.455 0.00 0.00 44.37 1.98
2364 3079 2.684374 TGTGGCAGCTTTACATGCATAG 59.316 45.455 0.00 0.00 44.37 2.23
2365 3080 2.720915 TGTGGCAGCTTTACATGCATA 58.279 42.857 0.00 0.00 44.37 3.14
2366 3081 1.548081 TGTGGCAGCTTTACATGCAT 58.452 45.000 0.00 0.00 44.37 3.96
2367 3082 1.473677 GATGTGGCAGCTTTACATGCA 59.526 47.619 10.91 0.00 44.37 3.96
2368 3083 1.473677 TGATGTGGCAGCTTTACATGC 59.526 47.619 10.91 0.00 41.80 4.06
2369 3084 5.700722 ATATGATGTGGCAGCTTTACATG 57.299 39.130 10.91 0.00 35.35 3.21
2370 3085 7.666804 TGAATATATGATGTGGCAGCTTTACAT 59.333 33.333 6.89 6.89 37.72 2.29
2371 3086 6.997476 TGAATATATGATGTGGCAGCTTTACA 59.003 34.615 0.00 0.00 0.00 2.41
2372 3087 7.439157 TGAATATATGATGTGGCAGCTTTAC 57.561 36.000 0.00 0.00 0.00 2.01
2373 3088 7.666804 ACATGAATATATGATGTGGCAGCTTTA 59.333 33.333 0.00 0.00 0.00 1.85
2374 3089 6.492429 ACATGAATATATGATGTGGCAGCTTT 59.508 34.615 0.00 0.00 0.00 3.51
2375 3090 6.008331 ACATGAATATATGATGTGGCAGCTT 58.992 36.000 0.00 0.00 0.00 3.74
2376 3091 5.567430 ACATGAATATATGATGTGGCAGCT 58.433 37.500 0.00 0.00 0.00 4.24
2377 3092 5.892160 ACATGAATATATGATGTGGCAGC 57.108 39.130 0.00 0.00 0.00 5.25
2378 3093 8.557592 ACTAACATGAATATATGATGTGGCAG 57.442 34.615 0.00 10.04 30.69 4.85
2379 3094 8.156165 TGACTAACATGAATATATGATGTGGCA 58.844 33.333 0.00 5.95 30.69 4.92
2380 3095 8.552083 TGACTAACATGAATATATGATGTGGC 57.448 34.615 0.00 4.01 30.69 5.01
2398 3113 9.490663 CGAACAAAAATATGAAGGATGACTAAC 57.509 33.333 0.00 0.00 0.00 2.34
2399 3114 9.443323 TCGAACAAAAATATGAAGGATGACTAA 57.557 29.630 0.00 0.00 0.00 2.24
2400 3115 9.443323 TTCGAACAAAAATATGAAGGATGACTA 57.557 29.630 0.00 0.00 0.00 2.59
2401 3116 7.921786 TCGAACAAAAATATGAAGGATGACT 57.078 32.000 0.00 0.00 0.00 3.41
2402 3117 8.964420 TTTCGAACAAAAATATGAAGGATGAC 57.036 30.769 0.00 0.00 0.00 3.06
2403 3118 9.571810 CATTTCGAACAAAAATATGAAGGATGA 57.428 29.630 0.00 0.00 0.00 2.92
2404 3119 9.571810 TCATTTCGAACAAAAATATGAAGGATG 57.428 29.630 0.00 0.00 0.00 3.51
2405 3120 9.573133 GTCATTTCGAACAAAAATATGAAGGAT 57.427 29.630 0.00 0.00 0.00 3.24
2406 3121 8.572185 TGTCATTTCGAACAAAAATATGAAGGA 58.428 29.630 0.00 0.00 0.00 3.36
2407 3122 8.741101 TGTCATTTCGAACAAAAATATGAAGG 57.259 30.769 0.00 0.00 0.00 3.46
2518 3233 8.755018 GCGTAAGTAGTTGACAAAAGTAACTAA 58.245 33.333 0.00 0.00 38.28 2.24
2519 3234 7.920151 TGCGTAAGTAGTTGACAAAAGTAACTA 59.080 33.333 0.00 0.00 41.68 2.24
2520 3235 6.757947 TGCGTAAGTAGTTGACAAAAGTAACT 59.242 34.615 0.00 0.00 41.68 2.24
2521 3236 6.936374 TGCGTAAGTAGTTGACAAAAGTAAC 58.064 36.000 0.00 0.00 41.68 2.50
2522 3237 7.718272 ATGCGTAAGTAGTTGACAAAAGTAA 57.282 32.000 0.00 0.00 41.68 2.24
2523 3238 8.991243 ATATGCGTAAGTAGTTGACAAAAGTA 57.009 30.769 0.00 0.00 41.68 2.24
2524 3239 7.900782 ATATGCGTAAGTAGTTGACAAAAGT 57.099 32.000 0.00 0.00 41.68 2.66
2529 3244 9.205719 TGTTTAAATATGCGTAAGTAGTTGACA 57.794 29.630 0.00 0.00 41.68 3.58
2533 3248 9.550811 GCTTTGTTTAAATATGCGTAAGTAGTT 57.449 29.630 0.00 0.00 41.68 2.24
2534 3249 8.943002 AGCTTTGTTTAAATATGCGTAAGTAGT 58.057 29.630 0.00 0.00 41.68 2.73
2537 3252 8.179615 GGTAGCTTTGTTTAAATATGCGTAAGT 58.820 33.333 0.00 0.00 41.68 2.24
2538 3253 7.372396 CGGTAGCTTTGTTTAAATATGCGTAAG 59.628 37.037 0.00 0.00 43.44 2.34
2539 3254 7.181418 CGGTAGCTTTGTTTAAATATGCGTAA 58.819 34.615 0.00 0.00 0.00 3.18
2540 3255 6.707711 CGGTAGCTTTGTTTAAATATGCGTA 58.292 36.000 0.00 0.00 0.00 4.42
2541 3256 5.565695 CGGTAGCTTTGTTTAAATATGCGT 58.434 37.500 0.00 0.00 0.00 5.24
2542 3257 4.436523 GCGGTAGCTTTGTTTAAATATGCG 59.563 41.667 0.00 0.00 41.01 4.73
2543 3258 5.336744 TGCGGTAGCTTTGTTTAAATATGC 58.663 37.500 0.00 0.00 45.42 3.14
2544 3259 6.804295 TGTTGCGGTAGCTTTGTTTAAATATG 59.196 34.615 0.00 0.00 45.42 1.78
2545 3260 6.915349 TGTTGCGGTAGCTTTGTTTAAATAT 58.085 32.000 0.00 0.00 45.42 1.28
2546 3261 6.315091 TGTTGCGGTAGCTTTGTTTAAATA 57.685 33.333 0.00 0.00 45.42 1.40
2547 3262 5.189659 TGTTGCGGTAGCTTTGTTTAAAT 57.810 34.783 0.00 0.00 45.42 1.40
2548 3263 4.634184 TGTTGCGGTAGCTTTGTTTAAA 57.366 36.364 0.00 0.00 45.42 1.52
2549 3264 4.352887 GTTGTTGCGGTAGCTTTGTTTAA 58.647 39.130 0.00 0.00 45.42 1.52
2550 3265 3.546417 CGTTGTTGCGGTAGCTTTGTTTA 60.546 43.478 0.00 0.00 45.42 2.01
2551 3266 2.793237 CGTTGTTGCGGTAGCTTTGTTT 60.793 45.455 0.00 0.00 45.42 2.83
2552 3267 1.268335 CGTTGTTGCGGTAGCTTTGTT 60.268 47.619 0.00 0.00 45.42 2.83
2553 3268 0.306533 CGTTGTTGCGGTAGCTTTGT 59.693 50.000 0.00 0.00 45.42 2.83
2554 3269 0.996727 GCGTTGTTGCGGTAGCTTTG 60.997 55.000 0.00 0.00 45.42 2.77
2555 3270 1.281656 GCGTTGTTGCGGTAGCTTT 59.718 52.632 0.00 0.00 45.42 3.51
2556 3271 2.943653 GCGTTGTTGCGGTAGCTT 59.056 55.556 0.00 0.00 45.42 3.74
2564 3279 3.423154 CTCTCCCCGCGTTGTTGC 61.423 66.667 4.92 0.00 0.00 4.17
2565 3280 1.738099 CTCTCTCCCCGCGTTGTTG 60.738 63.158 4.92 0.00 0.00 3.33
2566 3281 2.156051 GACTCTCTCCCCGCGTTGTT 62.156 60.000 4.92 0.00 0.00 2.83
2567 3282 2.600769 ACTCTCTCCCCGCGTTGT 60.601 61.111 4.92 0.00 0.00 3.32
2568 3283 1.949847 ATGACTCTCTCCCCGCGTTG 61.950 60.000 4.92 0.00 0.00 4.10
2569 3284 1.682684 ATGACTCTCTCCCCGCGTT 60.683 57.895 4.92 0.00 0.00 4.84
2570 3285 2.043852 ATGACTCTCTCCCCGCGT 60.044 61.111 4.92 0.00 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.