Multiple sequence alignment - TraesCS5A01G180200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G180200 chr5A 100.000 4810 0 0 1 4810 379022948 379018139 0.000000e+00 8883.0
1 TraesCS5A01G180200 chr5D 94.001 1667 70 11 2214 3851 286929367 286927702 0.000000e+00 2497.0
2 TraesCS5A01G180200 chr5D 92.980 812 30 11 729 1520 286933116 286932312 0.000000e+00 1158.0
3 TraesCS5A01G180200 chr5D 90.503 537 30 6 1530 2058 286930463 286929940 0.000000e+00 689.0
4 TraesCS5A01G180200 chr5D 85.624 473 49 6 81 538 286933859 286933391 3.370000e-131 479.0
5 TraesCS5A01G180200 chr5D 93.421 152 10 0 592 743 286933289 286933138 4.840000e-55 226.0
6 TraesCS5A01G180200 chr5D 83.539 243 34 2 1090 1326 539070309 539070551 6.270000e-54 222.0
7 TraesCS5A01G180200 chr5B 89.873 869 52 17 559 1414 325937893 325937048 0.000000e+00 1085.0
8 TraesCS5A01G180200 chr5B 92.357 628 37 8 2760 3381 325934616 325933994 0.000000e+00 883.0
9 TraesCS5A01G180200 chr5B 96.053 532 20 1 3399 3930 325933940 325933410 0.000000e+00 865.0
10 TraesCS5A01G180200 chr5B 88.076 629 35 14 2098 2713 325935301 325934700 0.000000e+00 710.0
11 TraesCS5A01G180200 chr5B 85.279 591 52 14 1 560 325938519 325937933 1.160000e-160 577.0
12 TraesCS5A01G180200 chr5B 85.185 243 30 3 1090 1326 680752102 680752344 1.340000e-60 244.0
13 TraesCS5A01G180200 chr5B 85.714 196 18 8 1672 1866 325936670 325936484 1.060000e-46 198.0
14 TraesCS5A01G180200 chr5B 81.557 244 42 2 1090 1330 680767283 680767526 1.060000e-46 198.0
15 TraesCS5A01G180200 chr5B 80.247 243 42 3 1090 1326 680746071 680746313 1.380000e-40 178.0
16 TraesCS5A01G180200 chr2D 84.821 224 28 2 1113 1330 31889627 31889404 2.250000e-53 220.0
17 TraesCS5A01G180200 chr2D 83.556 225 28 4 1115 1330 31950879 31950655 8.160000e-48 202.0
18 TraesCS5A01G180200 chr2D 81.226 261 40 4 1079 1330 32031343 32031083 8.160000e-48 202.0
19 TraesCS5A01G180200 chr2D 84.328 134 17 4 2580 2711 31888196 31888065 1.410000e-25 128.0
20 TraesCS5A01G180200 chr2D 83.212 137 19 4 2580 2714 32029793 32029659 6.540000e-24 122.0
21 TraesCS5A01G180200 chr2D 82.482 137 20 4 2580 2714 31949442 31949308 3.040000e-22 117.0
22 TraesCS5A01G180200 chr2A 85.075 134 16 4 2580 2711 34091586 34091455 3.020000e-27 134.0
23 TraesCS5A01G180200 chr2B 83.942 137 18 4 2580 2714 52599599 52599465 1.410000e-25 128.0
24 TraesCS5A01G180200 chr2B 82.836 134 19 4 2580 2711 52349790 52349921 3.040000e-22 117.0
25 TraesCS5A01G180200 chr4A 87.931 58 2 3 2407 2463 546479066 546479119 4.020000e-06 63.9
26 TraesCS5A01G180200 chr4A 86.207 58 3 3 2407 2463 546479413 546479466 1.870000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G180200 chr5A 379018139 379022948 4809 True 8883.000000 8883 100.000000 1 4810 1 chr5A.!!$R1 4809
1 TraesCS5A01G180200 chr5D 286927702 286933859 6157 True 1009.800000 2497 91.305800 81 3851 5 chr5D.!!$R1 3770
2 TraesCS5A01G180200 chr5B 325933410 325938519 5109 True 719.666667 1085 89.558667 1 3930 6 chr5B.!!$R1 3929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
689 823 0.037160 TTTCCCCTCCAACGCTAACC 59.963 55.0 0.0 0.0 0.0 2.85 F
1526 1883 0.250124 AAATCTTCACACGCACGGGA 60.250 50.0 0.0 0.0 0.0 5.14 F
2464 6085 0.908910 TCCTGGCCGCTCAAGAATTA 59.091 50.0 0.0 0.0 0.0 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2450 6071 0.378610 GCAGGTAATTCTTGAGCGGC 59.621 55.0 0.00 0.00 0.00 6.53 R
2721 6346 0.095935 CGAGCTCACCAAAATCGCTG 59.904 55.0 15.40 0.00 0.00 5.18 R
3959 7658 0.030101 AATTCACCGGTGTGCAAACG 59.970 50.0 32.74 6.19 42.46 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.961753 GGGACAAGAGCAAAAGGGTG 59.038 55.000 0.00 0.00 0.00 4.61
57 58 2.960129 GCGGTAGCCATCGTTCCG 60.960 66.667 0.00 0.00 43.37 4.30
96 97 4.186856 TCATTGCATAGTGAAGACGTCA 57.813 40.909 19.50 0.00 0.00 4.35
100 101 1.467543 GCATAGTGAAGACGTCAGCGA 60.468 52.381 19.50 1.35 42.00 4.93
104 105 2.254651 GAAGACGTCAGCGACCGT 59.745 61.111 19.50 0.72 42.00 4.83
117 118 1.003545 GCGACCGTTTGATGGATGATG 60.004 52.381 0.00 0.00 0.00 3.07
188 191 0.881118 GCGATGTTGTGTTCCATGGT 59.119 50.000 12.58 0.00 0.00 3.55
190 193 2.426522 CGATGTTGTGTTCCATGGTCT 58.573 47.619 12.58 0.00 0.00 3.85
192 195 2.727123 TGTTGTGTTCCATGGTCTGT 57.273 45.000 12.58 0.00 0.00 3.41
255 258 4.118168 ACTGGGGTGATTGTGAAGATTT 57.882 40.909 0.00 0.00 0.00 2.17
273 276 7.494625 TGAAGATTTAAGCTTTGGGTATAGTCG 59.505 37.037 3.20 0.00 0.00 4.18
286 289 3.762288 GGTATAGTCGGCAGATGGTCATA 59.238 47.826 0.00 0.00 0.00 2.15
287 290 4.402793 GGTATAGTCGGCAGATGGTCATAT 59.597 45.833 0.00 0.00 0.00 1.78
297 300 5.764686 GGCAGATGGTCATATGTTGTAATGA 59.235 40.000 1.90 0.00 32.91 2.57
325 328 8.973835 TTCATATGGTTTTTCGTCAATTAACC 57.026 30.769 2.13 0.00 38.92 2.85
331 334 5.227152 GTTTTTCGTCAATTAACCAGGCAT 58.773 37.500 0.00 0.00 0.00 4.40
334 337 4.433186 TCGTCAATTAACCAGGCATTTG 57.567 40.909 0.00 0.00 0.00 2.32
347 350 5.480073 ACCAGGCATTTGTCTTATGCTTAAA 59.520 36.000 7.64 0.00 45.91 1.52
350 353 8.362639 CCAGGCATTTGTCTTATGCTTAAATAT 58.637 33.333 7.64 0.00 45.91 1.28
358 361 6.921307 TGTCTTATGCTTAAATATTCGCGAGA 59.079 34.615 9.59 1.29 39.20 4.04
362 365 5.984233 TGCTTAAATATTCGCGAGACAAT 57.016 34.783 9.59 2.00 41.84 2.71
411 427 9.826574 ATAAATAAATGATTGCAAGTGAAGCAT 57.173 25.926 4.94 0.00 42.33 3.79
431 463 4.464112 CATTGCAATGCAGACGATCTATG 58.536 43.478 25.50 2.90 40.61 2.23
439 471 2.379732 CAGACGATCTATGCACGACAG 58.620 52.381 0.24 0.00 0.00 3.51
479 511 1.202110 GCATGATCTGACCAAAGTGCG 60.202 52.381 0.00 0.00 0.00 5.34
521 553 1.668047 CGTCCAACTGTCGTAAGGACC 60.668 57.143 0.00 0.00 45.46 4.46
529 562 2.256158 CGTAAGGACCGTGCGTCA 59.744 61.111 9.61 0.00 43.95 4.35
531 564 0.099259 CGTAAGGACCGTGCGTCATA 59.901 55.000 9.61 0.00 43.95 2.15
549 582 4.802039 GTCATATGCACAGCAATTTCCTTG 59.198 41.667 0.00 0.00 43.62 3.61
582 716 3.821841 CGCAAGGGAATTTTCACTGTAC 58.178 45.455 0.00 0.00 40.83 2.90
583 717 3.502211 CGCAAGGGAATTTTCACTGTACT 59.498 43.478 0.00 0.00 40.83 2.73
584 718 4.023193 CGCAAGGGAATTTTCACTGTACTT 60.023 41.667 0.00 0.00 40.83 2.24
586 720 6.293735 CGCAAGGGAATTTTCACTGTACTTAA 60.294 38.462 0.00 0.00 40.83 1.85
587 721 7.084486 GCAAGGGAATTTTCACTGTACTTAAG 58.916 38.462 0.00 0.00 40.83 1.85
588 722 7.255486 GCAAGGGAATTTTCACTGTACTTAAGT 60.255 37.037 13.68 13.68 40.83 2.24
589 723 7.981102 AGGGAATTTTCACTGTACTTAAGTC 57.019 36.000 12.39 4.83 40.03 3.01
590 724 6.649557 AGGGAATTTTCACTGTACTTAAGTCG 59.350 38.462 12.39 4.74 40.03 4.18
643 777 9.907576 GATTTGTGTAATTCAGTCGATCTAAAG 57.092 33.333 0.00 0.00 0.00 1.85
651 785 5.263968 TCAGTCGATCTAAAGGGTTGATC 57.736 43.478 0.00 0.00 34.81 2.92
689 823 0.037160 TTTCCCCTCCAACGCTAACC 59.963 55.000 0.00 0.00 0.00 2.85
735 869 2.100631 CACCGTGGACGAATCTGGC 61.101 63.158 0.00 0.00 43.02 4.85
737 871 3.554692 CGTGGACGAATCTGGCGC 61.555 66.667 0.00 0.00 43.02 6.53
743 877 2.509336 CGAATCTGGCGCGGAAGT 60.509 61.111 8.83 0.00 0.00 3.01
746 916 0.811616 GAATCTGGCGCGGAAGTCAT 60.812 55.000 8.83 0.00 0.00 3.06
757 927 2.478539 GCGGAAGTCATGCCTGATTTTC 60.479 50.000 1.49 6.07 32.07 2.29
758 928 2.223112 CGGAAGTCATGCCTGATTTTCG 60.223 50.000 12.22 12.22 41.72 3.46
759 929 2.478539 GGAAGTCATGCCTGATTTTCGC 60.479 50.000 1.49 0.00 32.07 4.70
760 930 0.729116 AGTCATGCCTGATTTTCGCG 59.271 50.000 0.00 0.00 32.98 5.87
761 931 0.726827 GTCATGCCTGATTTTCGCGA 59.273 50.000 3.71 3.71 32.98 5.87
762 932 1.331756 GTCATGCCTGATTTTCGCGAT 59.668 47.619 10.88 0.00 32.98 4.58
763 933 2.543848 GTCATGCCTGATTTTCGCGATA 59.456 45.455 10.88 0.90 32.98 2.92
764 934 2.802247 TCATGCCTGATTTTCGCGATAG 59.198 45.455 10.88 3.77 0.00 2.08
765 935 6.868328 GTCATGCCTGATTTTCGCGATAGC 62.868 50.000 10.88 4.66 46.71 2.97
797 967 1.443407 CCGATGAGATGCGGGAACT 59.557 57.895 0.00 0.00 43.67 3.01
822 998 2.951642 CTCCACTCCAGTTTGCTGAAAA 59.048 45.455 0.00 0.00 45.28 2.29
893 1069 2.587194 CAGATCGGGCGCCAGAAG 60.587 66.667 32.64 20.76 0.00 2.85
907 1083 2.072298 CCAGAAGCAAAAGGAGTCTCG 58.928 52.381 0.00 0.00 0.00 4.04
908 1084 1.462670 CAGAAGCAAAAGGAGTCTCGC 59.537 52.381 0.00 0.00 0.00 5.03
912 1092 1.000506 AGCAAAAGGAGTCTCGCGTAA 59.999 47.619 5.77 0.00 0.00 3.18
921 1101 0.651031 GTCTCGCGTAAATCCAAGCC 59.349 55.000 5.77 0.00 0.00 4.35
948 1128 2.731572 ACCAACTACCTAAGCTAGCGA 58.268 47.619 9.55 0.08 0.00 4.93
950 1130 2.034812 CCAACTACCTAAGCTAGCGAGG 59.965 54.545 27.81 27.81 36.36 4.63
951 1131 1.984066 ACTACCTAAGCTAGCGAGGG 58.016 55.000 30.73 24.25 34.41 4.30
1330 1519 4.673298 TGCCCGTGCAGGTACGTG 62.673 66.667 11.20 11.20 44.23 4.49
1391 1588 2.036992 GCCTACTGTGAGATCTCCCATG 59.963 54.545 20.03 10.80 0.00 3.66
1431 1628 7.927048 AGTACTACACGCAAAAAGAAAGAAAT 58.073 30.769 0.00 0.00 0.00 2.17
1465 1821 0.395173 ACGTTGCTCACCTTTGGGTT 60.395 50.000 0.00 0.00 44.73 4.11
1520 1877 3.626028 AAGGTCAAAATCTTCACACGC 57.374 42.857 0.00 0.00 0.00 5.34
1521 1878 2.571212 AGGTCAAAATCTTCACACGCA 58.429 42.857 0.00 0.00 0.00 5.24
1525 1882 0.591170 AAAATCTTCACACGCACGGG 59.409 50.000 0.00 0.00 0.00 5.28
1526 1883 0.250124 AAATCTTCACACGCACGGGA 60.250 50.000 0.00 0.00 0.00 5.14
1594 3796 8.357402 ACTCCAACAAATGTGTAGGTTAAAATC 58.643 33.333 0.00 0.00 36.80 2.17
1599 3801 8.110860 ACAAATGTGTAGGTTAAAATCTGAGG 57.889 34.615 0.00 0.00 35.72 3.86
1603 3805 7.739498 TGTGTAGGTTAAAATCTGAGGTTTC 57.261 36.000 0.00 0.00 0.00 2.78
1611 3813 7.603784 GGTTAAAATCTGAGGTTTCTTACGGTA 59.396 37.037 0.00 0.00 0.00 4.02
1612 3814 8.438513 GTTAAAATCTGAGGTTTCTTACGGTAC 58.561 37.037 0.00 0.00 0.00 3.34
1613 3815 5.733620 AATCTGAGGTTTCTTACGGTACA 57.266 39.130 0.00 0.00 0.00 2.90
1614 3816 5.934402 ATCTGAGGTTTCTTACGGTACAT 57.066 39.130 0.00 0.00 0.00 2.29
1615 3817 5.320549 TCTGAGGTTTCTTACGGTACATC 57.679 43.478 0.00 0.00 0.00 3.06
1654 3856 9.769677 ATAATCATATACTCTTACAGCCCTGTA 57.230 33.333 4.11 4.11 44.42 2.74
1655 3857 7.710676 ATCATATACTCTTACAGCCCTGTAG 57.289 40.000 8.04 2.40 45.57 2.74
1662 3864 5.013183 ACTCTTACAGCCCTGTAGAACAAAT 59.987 40.000 8.04 0.00 45.57 2.32
1670 3872 3.753272 CCCTGTAGAACAAATGTGGAGTG 59.247 47.826 0.00 0.00 0.00 3.51
1687 3889 1.097547 GTGTGGGAGATGCGAATGGG 61.098 60.000 0.00 0.00 0.00 4.00
1700 3902 2.683742 GCGAATGGGGTATGGGGATATG 60.684 54.545 0.00 0.00 0.00 1.78
1701 3903 2.683742 CGAATGGGGTATGGGGATATGC 60.684 54.545 0.00 0.00 0.00 3.14
1708 3910 3.535561 GGTATGGGGATATGCTTGATCG 58.464 50.000 0.00 0.00 0.00 3.69
1734 3938 7.747155 TTAAGACGAAGAGAGAGAAAGAGAA 57.253 36.000 0.00 0.00 0.00 2.87
1766 3970 2.302260 CTCTCGCTCCACCTCTGAATA 58.698 52.381 0.00 0.00 0.00 1.75
1912 4331 1.338864 CCAGCTGACTTGTGATGAGCT 60.339 52.381 17.39 0.00 40.67 4.09
2003 4432 4.343231 TGCACACATGTATGGGAAGAATT 58.657 39.130 6.20 0.00 34.60 2.17
2037 4466 2.231235 CCTTTGCATGTTGGTTACCTCC 59.769 50.000 2.07 0.00 0.00 4.30
2096 5669 8.669946 TTATTCTATTGTTGTTGAGTGTGTCA 57.330 30.769 0.00 0.00 0.00 3.58
2104 5711 3.205338 TGTTGAGTGTGTCATCAAGTGG 58.795 45.455 0.00 0.00 36.16 4.00
2167 5776 7.915293 AATTTTACATGGATCTTCACGTACA 57.085 32.000 0.00 0.00 0.00 2.90
2168 5777 8.506168 AATTTTACATGGATCTTCACGTACAT 57.494 30.769 0.00 0.00 0.00 2.29
2187 5796 7.745155 ACGTACATTCTCACGAATATAGAATCG 59.255 37.037 0.62 0.00 44.33 3.34
2195 5804 6.889494 TCACGAATATAGAATCGACTGAGAC 58.111 40.000 1.14 0.00 41.43 3.36
2201 5810 3.859411 AGAATCGACTGAGACTTGGTC 57.141 47.619 0.00 0.00 0.00 4.02
2208 5817 4.086199 GACTGAGACTTGGTCGACTAAG 57.914 50.000 32.49 32.49 39.88 2.18
2209 5818 3.752222 GACTGAGACTTGGTCGACTAAGA 59.248 47.826 38.29 20.68 37.79 2.10
2210 5819 4.337145 ACTGAGACTTGGTCGACTAAGAT 58.663 43.478 38.29 27.99 37.79 2.40
2211 5820 4.767928 ACTGAGACTTGGTCGACTAAGATT 59.232 41.667 38.29 27.26 37.79 2.40
2212 5821 5.244178 ACTGAGACTTGGTCGACTAAGATTT 59.756 40.000 38.29 25.22 37.79 2.17
2217 5826 5.790593 ACTTGGTCGACTAAGATTTAGCAA 58.209 37.500 38.29 18.95 37.79 3.91
2222 5831 4.444720 GTCGACTAAGATTTAGCAATCCCG 59.555 45.833 8.70 0.00 39.95 5.14
2223 5832 3.184581 CGACTAAGATTTAGCAATCCCGC 59.815 47.826 0.00 0.00 39.95 6.13
2252 5861 7.039882 TCAAACGATCCAATAGTTAAGGAGAC 58.960 38.462 0.00 0.00 34.40 3.36
2257 5866 6.515862 CGATCCAATAGTTAAGGAGACCTCTG 60.516 46.154 0.00 0.00 34.40 3.35
2261 5870 8.065627 TCCAATAGTTAAGGAGACCTCTGATTA 58.934 37.037 0.00 0.00 30.89 1.75
2268 5877 6.493189 AAGGAGACCTCTGATTATTCTTCC 57.507 41.667 0.00 0.00 30.89 3.46
2295 5904 3.689649 CCATTGTTAACCTGGTGCTCTAC 59.310 47.826 13.59 0.00 0.00 2.59
2352 5962 5.463061 CACCAGTTCATTTCAAACACAATCC 59.537 40.000 0.00 0.00 0.00 3.01
2362 5972 5.199024 TCAAACACAATCCCTTTCATGTG 57.801 39.130 3.41 3.41 46.52 3.21
2439 6060 7.649705 ACTGAACAATATTCTCATACTGCTACG 59.350 37.037 0.00 0.00 0.00 3.51
2450 6071 1.112113 ACTGCTACGTATGGTCCTGG 58.888 55.000 0.00 0.00 0.00 4.45
2462 6083 1.078143 GTCCTGGCCGCTCAAGAAT 60.078 57.895 0.00 0.00 0.00 2.40
2464 6085 0.908910 TCCTGGCCGCTCAAGAATTA 59.091 50.000 0.00 0.00 0.00 1.40
2545 6166 1.745087 GTCCCGTGGTCAGTATTACGA 59.255 52.381 0.00 0.00 38.72 3.43
2585 6206 1.065636 GGGGTGCCTTACTACAGGAAC 60.066 57.143 0.00 0.00 41.56 3.62
2632 6253 2.484241 GGAAGATGGGAAAATGCATGCC 60.484 50.000 16.68 2.10 0.00 4.40
2725 6365 6.725246 CCTAAAGGTATTTTGTAATCCAGCG 58.275 40.000 0.00 0.00 0.00 5.18
2732 6372 6.475402 GGTATTTTGTAATCCAGCGATTTTGG 59.525 38.462 0.00 0.00 39.49 3.28
2742 6382 0.371645 GCGATTTTGGTGAGCTCGAG 59.628 55.000 8.45 8.45 0.00 4.04
2754 6394 1.865970 GAGCTCGAGCAATCATCAAGG 59.134 52.381 36.87 0.00 45.16 3.61
2755 6395 1.483827 AGCTCGAGCAATCATCAAGGA 59.516 47.619 36.87 0.00 45.16 3.36
2756 6396 1.865970 GCTCGAGCAATCATCAAGGAG 59.134 52.381 31.91 0.00 41.59 3.69
2757 6397 2.482664 GCTCGAGCAATCATCAAGGAGA 60.483 50.000 31.91 0.00 41.59 3.71
2758 6398 3.382855 CTCGAGCAATCATCAAGGAGAG 58.617 50.000 0.00 0.00 0.00 3.20
2759 6399 1.865970 CGAGCAATCATCAAGGAGAGC 59.134 52.381 0.00 0.00 0.00 4.09
2760 6400 2.220313 GAGCAATCATCAAGGAGAGCC 58.780 52.381 0.00 0.00 0.00 4.70
2761 6401 1.562942 AGCAATCATCAAGGAGAGCCA 59.437 47.619 0.00 0.00 36.29 4.75
2763 6403 3.393609 AGCAATCATCAAGGAGAGCCATA 59.606 43.478 0.00 0.00 36.29 2.74
2764 6404 4.139786 GCAATCATCAAGGAGAGCCATAA 58.860 43.478 0.00 0.00 36.29 1.90
2781 6440 7.721399 AGAGCCATAATAAAAGTCTTATGTGGG 59.279 37.037 4.10 0.00 34.81 4.61
2880 6539 6.153680 ACATTCTAGAAGAAGGTGTTCTCGAT 59.846 38.462 11.53 0.00 46.04 3.59
3081 6740 2.363680 CGTCCTGAGTATCCAGCAGATT 59.636 50.000 0.00 0.00 36.33 2.40
3087 6746 3.386078 TGAGTATCCAGCAGATTGTCTCC 59.614 47.826 0.00 0.00 36.33 3.71
3299 6962 1.307097 GAGCATGACAGATGAAGGGC 58.693 55.000 0.00 0.00 0.00 5.19
3408 7107 3.808174 GTGGACCAGGCGATAACTAATTC 59.192 47.826 0.00 0.00 0.00 2.17
3421 7120 8.547091 CGATAACTAATTCGCACATTTTTCAT 57.453 30.769 0.00 0.00 0.00 2.57
3722 7421 0.036306 CAACGCACTCCCCCTACTTT 59.964 55.000 0.00 0.00 0.00 2.66
3753 7452 1.377202 GATGCGCTCCCAGTTGGAA 60.377 57.895 9.73 0.00 44.57 3.53
3896 7595 1.814793 GGAGTCCTCTCAACCAAAGC 58.185 55.000 0.41 0.00 42.05 3.51
3900 7599 0.884704 TCCTCTCAACCAAAGCACGC 60.885 55.000 0.00 0.00 0.00 5.34
3902 7601 1.153066 TCTCAACCAAAGCACGCCA 60.153 52.632 0.00 0.00 0.00 5.69
3920 7619 1.682854 CCATCCCACCATTGCATGTAC 59.317 52.381 0.00 0.00 0.00 2.90
3926 7625 3.627577 CCCACCATTGCATGTACTCTTAC 59.372 47.826 0.00 0.00 0.00 2.34
3930 7629 3.313526 CCATTGCATGTACTCTTACAGCC 59.686 47.826 0.00 0.00 41.62 4.85
3931 7630 2.691409 TGCATGTACTCTTACAGCCC 57.309 50.000 0.00 0.00 41.62 5.19
3932 7631 2.187958 TGCATGTACTCTTACAGCCCT 58.812 47.619 0.00 0.00 41.62 5.19
3933 7632 2.571653 TGCATGTACTCTTACAGCCCTT 59.428 45.455 0.00 0.00 41.62 3.95
3934 7633 3.009033 TGCATGTACTCTTACAGCCCTTT 59.991 43.478 0.00 0.00 41.62 3.11
3935 7634 3.623510 GCATGTACTCTTACAGCCCTTTC 59.376 47.826 0.00 0.00 41.62 2.62
3936 7635 4.832248 CATGTACTCTTACAGCCCTTTCA 58.168 43.478 0.00 0.00 41.62 2.69
3937 7636 5.431765 CATGTACTCTTACAGCCCTTTCAT 58.568 41.667 0.00 0.00 41.62 2.57
3938 7637 6.582636 CATGTACTCTTACAGCCCTTTCATA 58.417 40.000 0.00 0.00 41.62 2.15
3939 7638 6.808321 TGTACTCTTACAGCCCTTTCATAT 57.192 37.500 0.00 0.00 32.98 1.78
3940 7639 7.195374 TGTACTCTTACAGCCCTTTCATATT 57.805 36.000 0.00 0.00 32.98 1.28
3941 7640 7.272978 TGTACTCTTACAGCCCTTTCATATTC 58.727 38.462 0.00 0.00 32.98 1.75
3942 7641 5.685728 ACTCTTACAGCCCTTTCATATTCC 58.314 41.667 0.00 0.00 0.00 3.01
3943 7642 4.703897 TCTTACAGCCCTTTCATATTCCG 58.296 43.478 0.00 0.00 0.00 4.30
3944 7643 1.680338 ACAGCCCTTTCATATTCCGC 58.320 50.000 0.00 0.00 0.00 5.54
3945 7644 1.064758 ACAGCCCTTTCATATTCCGCA 60.065 47.619 0.00 0.00 0.00 5.69
3946 7645 2.233271 CAGCCCTTTCATATTCCGCAT 58.767 47.619 0.00 0.00 0.00 4.73
3947 7646 2.624838 CAGCCCTTTCATATTCCGCATT 59.375 45.455 0.00 0.00 0.00 3.56
3948 7647 3.068590 CAGCCCTTTCATATTCCGCATTT 59.931 43.478 0.00 0.00 0.00 2.32
3949 7648 3.706086 AGCCCTTTCATATTCCGCATTTT 59.294 39.130 0.00 0.00 0.00 1.82
3950 7649 4.162131 AGCCCTTTCATATTCCGCATTTTT 59.838 37.500 0.00 0.00 0.00 1.94
3951 7650 4.270808 GCCCTTTCATATTCCGCATTTTTG 59.729 41.667 0.00 0.00 0.00 2.44
3952 7651 4.810491 CCCTTTCATATTCCGCATTTTTGG 59.190 41.667 0.00 0.00 0.00 3.28
3953 7652 5.395103 CCCTTTCATATTCCGCATTTTTGGA 60.395 40.000 0.00 0.00 0.00 3.53
3954 7653 6.282930 CCTTTCATATTCCGCATTTTTGGAT 58.717 36.000 0.00 0.00 33.42 3.41
3955 7654 6.762661 CCTTTCATATTCCGCATTTTTGGATT 59.237 34.615 0.00 0.00 33.42 3.01
3956 7655 7.280652 CCTTTCATATTCCGCATTTTTGGATTT 59.719 33.333 0.00 0.00 33.42 2.17
3957 7656 8.558973 TTTCATATTCCGCATTTTTGGATTTT 57.441 26.923 0.00 0.00 33.42 1.82
3958 7657 7.536895 TCATATTCCGCATTTTTGGATTTTG 57.463 32.000 0.00 0.00 33.42 2.44
3959 7658 4.683501 ATTCCGCATTTTTGGATTTTGC 57.316 36.364 0.00 0.00 33.42 3.68
3965 7664 3.421560 GCATTTTTGGATTTTGCGTTTGC 59.578 39.130 0.00 0.00 43.20 3.68
3984 7683 3.412722 ACACCGGTGAATTCAGCAA 57.587 47.368 40.21 0.00 44.00 3.91
3985 7684 1.686355 ACACCGGTGAATTCAGCAAA 58.314 45.000 40.21 0.00 44.00 3.68
3986 7685 2.028130 ACACCGGTGAATTCAGCAAAA 58.972 42.857 40.21 0.00 44.00 2.44
3987 7686 2.627699 ACACCGGTGAATTCAGCAAAAT 59.372 40.909 40.21 10.81 44.00 1.82
3988 7687 3.069443 ACACCGGTGAATTCAGCAAAATT 59.931 39.130 40.21 10.32 44.00 1.82
3989 7688 3.674753 CACCGGTGAATTCAGCAAAATTC 59.325 43.478 31.31 13.86 44.00 2.17
3995 7694 5.549742 TGAATTCAGCAAAATTCAGGGTT 57.450 34.783 17.61 0.00 45.85 4.11
3996 7695 5.540911 TGAATTCAGCAAAATTCAGGGTTC 58.459 37.500 17.61 0.00 45.85 3.62
3997 7696 5.070180 TGAATTCAGCAAAATTCAGGGTTCA 59.930 36.000 17.61 1.44 45.85 3.18
3998 7697 5.549742 ATTCAGCAAAATTCAGGGTTCAA 57.450 34.783 0.00 0.00 0.00 2.69
3999 7698 5.549742 TTCAGCAAAATTCAGGGTTCAAT 57.450 34.783 0.00 0.00 0.00 2.57
4000 7699 5.549742 TCAGCAAAATTCAGGGTTCAATT 57.450 34.783 0.00 0.00 0.00 2.32
4001 7700 5.927819 TCAGCAAAATTCAGGGTTCAATTT 58.072 33.333 0.00 0.00 34.36 1.82
4002 7701 6.355747 TCAGCAAAATTCAGGGTTCAATTTT 58.644 32.000 0.00 0.00 41.00 1.82
4003 7702 6.827762 TCAGCAAAATTCAGGGTTCAATTTTT 59.172 30.769 0.00 0.00 39.22 1.94
4142 7841 8.980481 ATCCTTTCACTAATATTCCAACGAAT 57.020 30.769 0.00 0.00 41.67 3.34
4143 7842 8.801882 TCCTTTCACTAATATTCCAACGAATT 57.198 30.769 0.00 0.00 39.49 2.17
4144 7843 8.673711 TCCTTTCACTAATATTCCAACGAATTG 58.326 33.333 0.00 0.00 39.49 2.32
4145 7844 7.432252 CCTTTCACTAATATTCCAACGAATTGC 59.568 37.037 0.00 0.00 39.49 3.56
4146 7845 6.993786 TCACTAATATTCCAACGAATTGCA 57.006 33.333 0.00 0.00 39.49 4.08
4147 7846 6.781138 TCACTAATATTCCAACGAATTGCAC 58.219 36.000 0.00 0.00 39.49 4.57
4148 7847 6.597672 TCACTAATATTCCAACGAATTGCACT 59.402 34.615 0.00 0.00 39.49 4.40
4149 7848 7.120579 TCACTAATATTCCAACGAATTGCACTT 59.879 33.333 0.00 0.00 39.49 3.16
4150 7849 7.754924 CACTAATATTCCAACGAATTGCACTTT 59.245 33.333 0.00 0.00 39.49 2.66
4151 7850 7.968405 ACTAATATTCCAACGAATTGCACTTTC 59.032 33.333 0.00 0.00 39.49 2.62
4152 7851 4.582701 ATTCCAACGAATTGCACTTTCA 57.417 36.364 8.78 0.00 35.00 2.69
4153 7852 4.377839 TTCCAACGAATTGCACTTTCAA 57.622 36.364 8.78 0.00 34.17 2.69
4154 7853 4.377839 TCCAACGAATTGCACTTTCAAA 57.622 36.364 8.78 0.00 34.17 2.69
4155 7854 4.942852 TCCAACGAATTGCACTTTCAAAT 58.057 34.783 8.78 0.00 34.17 2.32
4156 7855 4.744137 TCCAACGAATTGCACTTTCAAATG 59.256 37.500 8.78 4.66 34.17 2.32
4157 7856 4.507388 CCAACGAATTGCACTTTCAAATGT 59.493 37.500 8.78 0.00 34.17 2.71
4158 7857 5.006552 CCAACGAATTGCACTTTCAAATGTT 59.993 36.000 8.78 2.93 34.17 2.71
4159 7858 6.199908 CCAACGAATTGCACTTTCAAATGTTA 59.800 34.615 8.78 0.00 34.17 2.41
4160 7859 7.095691 CCAACGAATTGCACTTTCAAATGTTAT 60.096 33.333 8.78 0.00 34.17 1.89
4161 7860 7.566858 ACGAATTGCACTTTCAAATGTTATC 57.433 32.000 8.78 0.00 0.00 1.75
4162 7861 7.370383 ACGAATTGCACTTTCAAATGTTATCT 58.630 30.769 8.78 0.00 0.00 1.98
4163 7862 7.867403 ACGAATTGCACTTTCAAATGTTATCTT 59.133 29.630 8.78 0.00 0.00 2.40
4164 7863 9.340695 CGAATTGCACTTTCAAATGTTATCTTA 57.659 29.630 8.78 0.00 0.00 2.10
4196 7895 8.824159 TTCACATTTTTCTCAACAAAGTTTGA 57.176 26.923 22.23 0.00 34.30 2.69
4206 7905 7.898725 CTCAACAAAGTTTGAGTGATTACAC 57.101 36.000 22.23 0.00 45.12 2.90
4223 7922 8.905702 GTGATTACACATCAATTTCAGAAACAC 58.094 33.333 0.00 0.00 45.32 3.32
4224 7923 8.849168 TGATTACACATCAATTTCAGAAACACT 58.151 29.630 0.00 0.00 0.00 3.55
4227 7926 9.944663 TTACACATCAATTTCAGAAACACTAAC 57.055 29.630 0.00 0.00 0.00 2.34
4228 7927 7.425606 ACACATCAATTTCAGAAACACTAACC 58.574 34.615 0.00 0.00 0.00 2.85
4229 7928 6.578545 CACATCAATTTCAGAAACACTAACCG 59.421 38.462 0.00 0.00 0.00 4.44
4230 7929 6.485313 ACATCAATTTCAGAAACACTAACCGA 59.515 34.615 0.00 0.00 0.00 4.69
4231 7930 6.539649 TCAATTTCAGAAACACTAACCGAG 57.460 37.500 0.00 0.00 0.00 4.63
4232 7931 5.468746 TCAATTTCAGAAACACTAACCGAGG 59.531 40.000 0.00 0.00 0.00 4.63
4233 7932 4.675976 TTTCAGAAACACTAACCGAGGA 57.324 40.909 0.00 0.00 0.00 3.71
4234 7933 4.675976 TTCAGAAACACTAACCGAGGAA 57.324 40.909 0.00 0.00 0.00 3.36
4235 7934 4.675976 TCAGAAACACTAACCGAGGAAA 57.324 40.909 0.00 0.00 0.00 3.13
4236 7935 4.374399 TCAGAAACACTAACCGAGGAAAC 58.626 43.478 0.00 0.00 0.00 2.78
4237 7936 4.124238 CAGAAACACTAACCGAGGAAACA 58.876 43.478 0.00 0.00 0.00 2.83
4238 7937 4.755123 CAGAAACACTAACCGAGGAAACAT 59.245 41.667 0.00 0.00 0.00 2.71
4239 7938 5.238650 CAGAAACACTAACCGAGGAAACATT 59.761 40.000 0.00 0.00 0.00 2.71
4240 7939 5.469084 AGAAACACTAACCGAGGAAACATTC 59.531 40.000 0.00 0.00 0.00 2.67
4241 7940 4.345859 ACACTAACCGAGGAAACATTCA 57.654 40.909 0.00 0.00 0.00 2.57
4242 7941 4.710324 ACACTAACCGAGGAAACATTCAA 58.290 39.130 0.00 0.00 0.00 2.69
4243 7942 4.514066 ACACTAACCGAGGAAACATTCAAC 59.486 41.667 0.00 0.00 0.00 3.18
4244 7943 4.513692 CACTAACCGAGGAAACATTCAACA 59.486 41.667 0.00 0.00 0.00 3.33
4245 7944 5.181245 CACTAACCGAGGAAACATTCAACAT 59.819 40.000 0.00 0.00 0.00 2.71
4246 7945 6.370442 CACTAACCGAGGAAACATTCAACATA 59.630 38.462 0.00 0.00 0.00 2.29
4247 7946 5.622770 AACCGAGGAAACATTCAACATAC 57.377 39.130 0.00 0.00 0.00 2.39
4248 7947 4.647611 ACCGAGGAAACATTCAACATACA 58.352 39.130 0.00 0.00 0.00 2.29
4249 7948 5.253330 ACCGAGGAAACATTCAACATACAT 58.747 37.500 0.00 0.00 0.00 2.29
4250 7949 5.710099 ACCGAGGAAACATTCAACATACATT 59.290 36.000 0.00 0.00 0.00 2.71
4251 7950 6.208599 ACCGAGGAAACATTCAACATACATTT 59.791 34.615 0.00 0.00 0.00 2.32
4252 7951 6.527722 CCGAGGAAACATTCAACATACATTTG 59.472 38.462 0.00 0.00 0.00 2.32
4253 7952 6.033831 CGAGGAAACATTCAACATACATTTGC 59.966 38.462 0.00 0.00 0.00 3.68
4254 7953 6.757237 AGGAAACATTCAACATACATTTGCA 58.243 32.000 0.00 0.00 0.00 4.08
4255 7954 6.646240 AGGAAACATTCAACATACATTTGCAC 59.354 34.615 0.00 0.00 0.00 4.57
4256 7955 6.399880 GGAAACATTCAACATACATTTGCACG 60.400 38.462 0.00 0.00 0.00 5.34
4257 7956 5.119931 ACATTCAACATACATTTGCACGT 57.880 34.783 0.00 0.00 0.00 4.49
4258 7957 6.247727 ACATTCAACATACATTTGCACGTA 57.752 33.333 0.00 0.00 0.00 3.57
4259 7958 6.851609 ACATTCAACATACATTTGCACGTAT 58.148 32.000 0.00 0.00 0.00 3.06
4260 7959 7.312154 ACATTCAACATACATTTGCACGTATT 58.688 30.769 0.00 0.00 0.00 1.89
4261 7960 7.273164 ACATTCAACATACATTTGCACGTATTG 59.727 33.333 0.00 0.00 0.00 1.90
4262 7961 5.635866 TCAACATACATTTGCACGTATTGG 58.364 37.500 0.00 0.00 0.00 3.16
4263 7962 5.412904 TCAACATACATTTGCACGTATTGGA 59.587 36.000 0.00 0.00 0.00 3.53
4264 7963 5.888691 ACATACATTTGCACGTATTGGAA 57.111 34.783 0.00 0.00 32.89 3.53
4265 7964 6.449635 ACATACATTTGCACGTATTGGAAT 57.550 33.333 0.00 0.00 35.14 3.01
4266 7965 6.862209 ACATACATTTGCACGTATTGGAATT 58.138 32.000 0.00 0.00 35.14 2.17
4267 7966 7.990917 ACATACATTTGCACGTATTGGAATTA 58.009 30.769 0.00 0.00 35.14 1.40
4268 7967 8.629158 ACATACATTTGCACGTATTGGAATTAT 58.371 29.630 0.00 0.00 35.14 1.28
4269 7968 9.462174 CATACATTTGCACGTATTGGAATTATT 57.538 29.630 0.00 0.00 35.14 1.40
4272 7971 9.862371 ACATTTGCACGTATTGGAATTATTTAA 57.138 25.926 0.00 0.00 35.14 1.52
4276 7975 9.692749 TTGCACGTATTGGAATTATTTAAAACA 57.307 25.926 0.00 0.00 29.00 2.83
4277 7976 9.862371 TGCACGTATTGGAATTATTTAAAACAT 57.138 25.926 0.00 0.00 0.00 2.71
4396 8095 7.873719 TGAAGGACTAAATTGAAGTTTGTGA 57.126 32.000 0.00 0.00 0.00 3.58
4397 8096 8.287439 TGAAGGACTAAATTGAAGTTTGTGAA 57.713 30.769 0.00 0.00 0.00 3.18
4398 8097 8.744652 TGAAGGACTAAATTGAAGTTTGTGAAA 58.255 29.630 0.00 0.00 0.00 2.69
4399 8098 9.750125 GAAGGACTAAATTGAAGTTTGTGAAAT 57.250 29.630 0.00 0.00 0.00 2.17
4435 8134 8.578308 TGTTTCTGAAATTGATTGAATGTGAC 57.422 30.769 6.06 0.00 0.00 3.67
4436 8135 8.196103 TGTTTCTGAAATTGATTGAATGTGACA 58.804 29.630 6.06 0.00 0.00 3.58
4437 8136 9.033481 GTTTCTGAAATTGATTGAATGTGACAA 57.967 29.630 6.06 0.00 0.00 3.18
4438 8137 9.597170 TTTCTGAAATTGATTGAATGTGACAAA 57.403 25.926 0.00 0.00 0.00 2.83
4439 8138 9.597170 TTCTGAAATTGATTGAATGTGACAAAA 57.403 25.926 0.00 0.00 0.00 2.44
4440 8139 9.597170 TCTGAAATTGATTGAATGTGACAAAAA 57.403 25.926 0.00 0.00 0.00 1.94
4653 8352 7.891183 TTTTTGTGAAAACGGAAAGATGAAA 57.109 28.000 0.00 0.00 30.07 2.69
4654 8353 8.485976 TTTTTGTGAAAACGGAAAGATGAAAT 57.514 26.923 0.00 0.00 30.07 2.17
4655 8354 8.485976 TTTTGTGAAAACGGAAAGATGAAATT 57.514 26.923 0.00 0.00 0.00 1.82
4656 8355 8.485976 TTTGTGAAAACGGAAAGATGAAATTT 57.514 26.923 0.00 0.00 0.00 1.82
4657 8356 7.462109 TGTGAAAACGGAAAGATGAAATTTG 57.538 32.000 0.00 0.00 0.00 2.32
4658 8357 6.478344 TGTGAAAACGGAAAGATGAAATTTGG 59.522 34.615 0.00 0.00 0.00 3.28
4659 8358 5.465056 TGAAAACGGAAAGATGAAATTTGGC 59.535 36.000 0.00 0.00 0.00 4.52
4660 8359 4.871933 AACGGAAAGATGAAATTTGGCT 57.128 36.364 0.00 0.00 0.00 4.75
4661 8360 4.178545 ACGGAAAGATGAAATTTGGCTG 57.821 40.909 0.00 0.00 0.00 4.85
4662 8361 3.826157 ACGGAAAGATGAAATTTGGCTGA 59.174 39.130 0.00 0.00 0.00 4.26
4663 8362 4.280677 ACGGAAAGATGAAATTTGGCTGAA 59.719 37.500 0.00 0.00 0.00 3.02
4664 8363 5.221422 ACGGAAAGATGAAATTTGGCTGAAA 60.221 36.000 0.00 0.00 0.00 2.69
4665 8364 5.695816 CGGAAAGATGAAATTTGGCTGAAAA 59.304 36.000 0.00 0.00 0.00 2.29
4666 8365 6.202570 CGGAAAGATGAAATTTGGCTGAAAAA 59.797 34.615 0.00 0.00 0.00 1.94
4667 8366 7.095102 CGGAAAGATGAAATTTGGCTGAAAAAT 60.095 33.333 0.00 0.00 0.00 1.82
4668 8367 8.570488 GGAAAGATGAAATTTGGCTGAAAAATT 58.430 29.630 0.00 0.00 38.54 1.82
4669 8368 9.603298 GAAAGATGAAATTTGGCTGAAAAATTC 57.397 29.630 0.00 0.00 36.46 2.17
4670 8369 8.680039 AAGATGAAATTTGGCTGAAAAATTCA 57.320 26.923 0.00 10.70 36.46 2.57
4683 8382 6.790232 TGAAAAATTCAGACCAAGGTTTCT 57.210 33.333 0.00 0.00 34.08 2.52
4684 8383 7.181569 TGAAAAATTCAGACCAAGGTTTCTT 57.818 32.000 0.00 0.00 34.08 2.52
4685 8384 7.619965 TGAAAAATTCAGACCAAGGTTTCTTT 58.380 30.769 0.00 0.00 34.08 2.52
4686 8385 7.548780 TGAAAAATTCAGACCAAGGTTTCTTTG 59.451 33.333 0.00 0.00 34.08 2.77
4687 8386 6.790232 AAATTCAGACCAAGGTTTCTTTGA 57.210 33.333 0.00 0.00 0.00 2.69
4688 8387 6.790232 AATTCAGACCAAGGTTTCTTTGAA 57.210 33.333 0.00 0.78 33.33 2.69
4689 8388 6.983906 ATTCAGACCAAGGTTTCTTTGAAT 57.016 33.333 0.00 2.91 34.47 2.57
4690 8389 8.477419 AATTCAGACCAAGGTTTCTTTGAATA 57.523 30.769 12.67 0.00 36.49 1.75
4691 8390 7.510549 TTCAGACCAAGGTTTCTTTGAATAG 57.489 36.000 0.00 0.00 0.00 1.73
4692 8391 5.473504 TCAGACCAAGGTTTCTTTGAATAGC 59.526 40.000 0.00 0.00 0.00 2.97
4693 8392 5.474876 CAGACCAAGGTTTCTTTGAATAGCT 59.525 40.000 0.00 0.00 0.00 3.32
4694 8393 6.015940 CAGACCAAGGTTTCTTTGAATAGCTT 60.016 38.462 0.00 0.00 0.00 3.74
4695 8394 6.551227 AGACCAAGGTTTCTTTGAATAGCTTT 59.449 34.615 0.00 0.00 0.00 3.51
4696 8395 6.515832 ACCAAGGTTTCTTTGAATAGCTTTG 58.484 36.000 0.00 0.00 0.00 2.77
4697 8396 6.323739 ACCAAGGTTTCTTTGAATAGCTTTGA 59.676 34.615 0.00 0.00 0.00 2.69
4698 8397 7.147742 ACCAAGGTTTCTTTGAATAGCTTTGAA 60.148 33.333 0.00 0.00 0.00 2.69
4699 8398 7.710475 CCAAGGTTTCTTTGAATAGCTTTGAAA 59.290 33.333 0.00 0.00 0.00 2.69
4700 8399 9.097257 CAAGGTTTCTTTGAATAGCTTTGAAAA 57.903 29.630 0.00 0.00 0.00 2.29
4701 8400 9.836864 AAGGTTTCTTTGAATAGCTTTGAAAAT 57.163 25.926 0.00 0.00 0.00 1.82
4731 8430 9.993454 TGAACAAATTTGGATCAAAATATGTCA 57.007 25.926 21.74 7.52 36.90 3.58
4733 8432 9.775854 AACAAATTTGGATCAAAATATGTCACA 57.224 25.926 21.74 0.00 36.90 3.58
4734 8433 9.206870 ACAAATTTGGATCAAAATATGTCACAC 57.793 29.630 21.74 0.00 36.90 3.82
4735 8434 9.205719 CAAATTTGGATCAAAATATGTCACACA 57.794 29.630 8.52 0.00 36.90 3.72
4736 8435 8.991243 AATTTGGATCAAAATATGTCACACAG 57.009 30.769 8.52 0.00 36.90 3.66
4737 8436 7.523293 TTTGGATCAAAATATGTCACACAGT 57.477 32.000 0.00 0.00 29.89 3.55
4738 8437 7.523293 TTGGATCAAAATATGTCACACAGTT 57.477 32.000 0.00 0.00 0.00 3.16
4739 8438 7.523293 TGGATCAAAATATGTCACACAGTTT 57.477 32.000 0.00 0.00 0.00 2.66
4740 8439 7.950512 TGGATCAAAATATGTCACACAGTTTT 58.049 30.769 0.00 0.00 33.22 2.43
4741 8440 8.420222 TGGATCAAAATATGTCACACAGTTTTT 58.580 29.630 0.00 0.00 31.72 1.94
4742 8441 9.906660 GGATCAAAATATGTCACACAGTTTTTA 57.093 29.630 0.00 0.00 31.72 1.52
4798 8497 9.603921 ATGAAATGTTTCTGAAATTTTGTCTGT 57.396 25.926 14.68 0.00 38.02 3.41
4799 8498 9.086336 TGAAATGTTTCTGAAATTTTGTCTGTC 57.914 29.630 14.68 5.08 38.02 3.51
4800 8499 9.086336 GAAATGTTTCTGAAATTTTGTCTGTCA 57.914 29.630 14.68 3.14 34.41 3.58
4801 8500 9.434420 AAATGTTTCTGAAATTTTGTCTGTCAA 57.566 25.926 6.06 0.00 0.00 3.18
4802 8501 9.603921 AATGTTTCTGAAATTTTGTCTGTCAAT 57.396 25.926 6.06 0.00 35.84 2.57
4803 8502 8.410030 TGTTTCTGAAATTTTGTCTGTCAATG 57.590 30.769 6.06 0.00 35.84 2.82
4804 8503 7.492020 TGTTTCTGAAATTTTGTCTGTCAATGG 59.508 33.333 6.06 0.00 35.84 3.16
4805 8504 6.088016 TCTGAAATTTTGTCTGTCAATGGG 57.912 37.500 0.00 0.00 35.84 4.00
4806 8505 5.598005 TCTGAAATTTTGTCTGTCAATGGGT 59.402 36.000 0.00 0.00 35.84 4.51
4807 8506 5.599732 TGAAATTTTGTCTGTCAATGGGTG 58.400 37.500 0.00 0.00 35.84 4.61
4808 8507 3.665745 ATTTTGTCTGTCAATGGGTGC 57.334 42.857 0.00 0.00 35.84 5.01
4809 8508 2.064434 TTTGTCTGTCAATGGGTGCA 57.936 45.000 0.00 0.00 35.84 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.538047 TTGCTCTTGTCCCTCATTGC 58.462 50.000 0.00 0.00 0.00 3.56
38 39 2.171725 GGAACGATGGCTACCGCAC 61.172 63.158 0.00 0.00 38.10 5.34
57 58 3.194005 TGATTTCTCCTTCGGTATGCC 57.806 47.619 0.00 0.00 0.00 4.40
96 97 0.249120 TCATCCATCAAACGGTCGCT 59.751 50.000 0.00 0.00 0.00 4.93
100 101 2.092753 AGAGCATCATCCATCAAACGGT 60.093 45.455 0.00 0.00 37.82 4.83
104 105 6.434965 TGAAAAGAAGAGCATCATCCATCAAA 59.565 34.615 0.00 0.00 37.82 2.69
117 118 4.276926 ACATGACAACCTGAAAAGAAGAGC 59.723 41.667 0.00 0.00 0.00 4.09
188 191 0.840617 TACAAGCACAACCCCACAGA 59.159 50.000 0.00 0.00 0.00 3.41
190 193 0.821711 GCTACAAGCACAACCCCACA 60.822 55.000 0.00 0.00 41.89 4.17
192 195 1.599518 CGCTACAAGCACAACCCCA 60.600 57.895 0.00 0.00 42.58 4.96
220 223 0.788391 CCCAGTAGACGAACAAACGC 59.212 55.000 0.00 0.00 36.70 4.84
221 224 1.269936 ACCCCAGTAGACGAACAAACG 60.270 52.381 0.00 0.00 39.31 3.60
255 258 2.767394 TGCCGACTATACCCAAAGCTTA 59.233 45.455 0.00 0.00 0.00 3.09
273 276 5.764686 TCATTACAACATATGACCATCTGCC 59.235 40.000 10.38 0.00 0.00 4.85
303 306 7.543756 CCTGGTTAATTGACGAAAAACCATAT 58.456 34.615 7.09 0.00 46.19 1.78
305 308 5.778862 CCTGGTTAATTGACGAAAAACCAT 58.221 37.500 7.09 0.00 46.19 3.55
313 316 3.823873 ACAAATGCCTGGTTAATTGACGA 59.176 39.130 0.00 0.00 0.00 4.20
331 334 7.911343 TCGCGAATATTTAAGCATAAGACAAA 58.089 30.769 6.20 0.00 0.00 2.83
334 337 7.096189 TGTCTCGCGAATATTTAAGCATAAGAC 60.096 37.037 11.33 8.58 35.62 3.01
411 427 2.288729 GCATAGATCGTCTGCATTGCAA 59.711 45.455 13.18 0.00 38.41 4.08
421 437 1.124462 GCTGTCGTGCATAGATCGTC 58.876 55.000 0.00 0.00 0.00 4.20
431 463 0.857935 GCTGATCTATGCTGTCGTGC 59.142 55.000 0.00 0.00 0.00 5.34
439 471 2.335752 CATGGACGAGCTGATCTATGC 58.664 52.381 0.00 0.00 28.67 3.14
479 511 2.853731 ATCCAATCGAGTCGTCTGTC 57.146 50.000 13.12 0.00 0.00 3.51
549 582 0.947244 CCCTTGCGGATGATACTTGC 59.053 55.000 0.00 0.00 0.00 4.01
550 583 2.620251 TCCCTTGCGGATGATACTTG 57.380 50.000 0.00 0.00 34.86 3.16
566 640 6.647895 TCGACTTAAGTACAGTGAAAATTCCC 59.352 38.462 8.42 0.00 0.00 3.97
582 716 5.050490 CCCATCTTACACCATCGACTTAAG 58.950 45.833 0.00 0.00 0.00 1.85
583 717 4.682320 GCCCATCTTACACCATCGACTTAA 60.682 45.833 0.00 0.00 0.00 1.85
584 718 3.181469 GCCCATCTTACACCATCGACTTA 60.181 47.826 0.00 0.00 0.00 2.24
586 720 1.139058 GCCCATCTTACACCATCGACT 59.861 52.381 0.00 0.00 0.00 4.18
587 721 1.583054 GCCCATCTTACACCATCGAC 58.417 55.000 0.00 0.00 0.00 4.20
588 722 0.468226 GGCCCATCTTACACCATCGA 59.532 55.000 0.00 0.00 0.00 3.59
589 723 0.180171 TGGCCCATCTTACACCATCG 59.820 55.000 0.00 0.00 0.00 3.84
590 724 2.233271 CATGGCCCATCTTACACCATC 58.767 52.381 0.00 0.00 39.08 3.51
643 777 2.871096 TTACCCACAGTGATCAACCC 57.129 50.000 0.62 0.00 0.00 4.11
651 785 4.455877 GGAAAGACTGAATTACCCACAGTG 59.544 45.833 0.00 0.00 43.49 3.66
718 852 2.264794 GCCAGATTCGTCCACGGT 59.735 61.111 0.00 0.00 40.29 4.83
735 869 1.091771 AATCAGGCATGACTTCCGCG 61.092 55.000 1.71 0.00 38.57 6.46
737 871 2.223112 CGAAAATCAGGCATGACTTCCG 60.223 50.000 1.71 0.00 38.57 4.30
743 877 1.667236 ATCGCGAAAATCAGGCATGA 58.333 45.000 15.24 2.36 40.50 3.07
746 916 0.937304 GCTATCGCGAAAATCAGGCA 59.063 50.000 15.24 0.00 0.00 4.75
797 967 0.108585 GCAAACTGGAGTGGAGTGGA 59.891 55.000 0.00 0.00 0.00 4.02
836 1012 1.737236 TGGATACGCAAATCACACTGC 59.263 47.619 0.00 0.00 42.51 4.40
893 1069 1.425412 TTACGCGAGACTCCTTTTGC 58.575 50.000 15.93 0.00 0.00 3.68
907 1083 1.810151 TGTTGAGGCTTGGATTTACGC 59.190 47.619 0.00 0.00 0.00 4.42
908 1084 3.365969 GGTTGTTGAGGCTTGGATTTACG 60.366 47.826 0.00 0.00 0.00 3.18
912 1092 2.365293 GTTGGTTGTTGAGGCTTGGATT 59.635 45.455 0.00 0.00 0.00 3.01
921 1101 4.642429 AGCTTAGGTAGTTGGTTGTTGAG 58.358 43.478 0.00 0.00 0.00 3.02
948 1128 2.112190 GGAGTCGATCCTTTCTTCCCT 58.888 52.381 6.63 0.00 45.64 4.20
1330 1519 2.437413 CCAAGGAAGGACCAAGTAAGC 58.563 52.381 0.00 0.00 42.04 3.09
1391 1588 0.247458 GTACTACTCGACCGCGTGAC 60.247 60.000 4.92 0.00 38.98 3.67
1465 1821 5.474578 ACTTCATAACAGAACTGAGCTGA 57.525 39.130 8.87 5.19 36.86 4.26
1525 1882 2.910688 TCCATTCAGGCGGTAAGATC 57.089 50.000 0.00 0.00 37.29 2.75
1526 1883 3.136443 TGAATCCATTCAGGCGGTAAGAT 59.864 43.478 0.00 0.00 41.51 2.40
1583 3785 7.820872 CCGTAAGAAACCTCAGATTTTAACCTA 59.179 37.037 0.00 0.00 43.02 3.08
1594 3796 5.068234 TGATGTACCGTAAGAAACCTCAG 57.932 43.478 0.00 0.00 43.02 3.35
1599 3801 6.920210 GGGTAGTATGATGTACCGTAAGAAAC 59.080 42.308 0.00 0.00 39.84 2.78
1603 3805 6.208007 TCATGGGTAGTATGATGTACCGTAAG 59.792 42.308 0.00 0.00 39.84 2.34
1654 3856 2.174639 TCCCACACTCCACATTTGTTCT 59.825 45.455 0.00 0.00 0.00 3.01
1655 3857 2.554032 CTCCCACACTCCACATTTGTTC 59.446 50.000 0.00 0.00 0.00 3.18
1662 3864 1.679311 GCATCTCCCACACTCCACA 59.321 57.895 0.00 0.00 0.00 4.17
1670 3872 1.526917 CCCCATTCGCATCTCCCAC 60.527 63.158 0.00 0.00 0.00 4.61
1687 3889 3.055094 ACGATCAAGCATATCCCCATACC 60.055 47.826 0.00 0.00 0.00 2.73
1708 3910 7.586747 TCTCTTTCTCTCTCTTCGTCTTAAAC 58.413 38.462 0.00 0.00 0.00 2.01
1734 3938 2.231721 GGAGCGAGAGGTTCTGTAGTTT 59.768 50.000 0.00 0.00 45.11 2.66
1766 3970 1.486211 CCTAGGTCAGATCCAACGGT 58.514 55.000 0.00 0.00 0.00 4.83
1912 4331 2.644299 ACTTTGGGTGGATGAGATGTGA 59.356 45.455 0.00 0.00 0.00 3.58
2003 4432 2.941480 TGCAAAGGGGTAAAACCGTAA 58.059 42.857 0.00 0.00 39.83 3.18
2037 4466 1.949525 CACAGTTGGTGTCCTTCCTTG 59.050 52.381 0.00 0.00 42.75 3.61
2088 5661 2.346766 TTGCCACTTGATGACACACT 57.653 45.000 0.00 0.00 0.00 3.55
2187 5796 3.752222 TCTTAGTCGACCAAGTCTCAGTC 59.248 47.826 20.69 0.00 0.00 3.51
2195 5804 6.018669 GGATTGCTAAATCTTAGTCGACCAAG 60.019 42.308 16.44 16.44 41.74 3.61
2201 5810 3.184581 GCGGGATTGCTAAATCTTAGTCG 59.815 47.826 0.00 0.00 41.74 4.18
2202 5811 4.212214 CAGCGGGATTGCTAAATCTTAGTC 59.788 45.833 0.00 0.00 45.23 2.59
2205 5814 4.150897 ACAGCGGGATTGCTAAATCTTA 57.849 40.909 0.00 0.00 45.23 2.10
2206 5815 3.004752 ACAGCGGGATTGCTAAATCTT 57.995 42.857 0.00 0.00 45.23 2.40
2207 5816 2.717639 ACAGCGGGATTGCTAAATCT 57.282 45.000 0.00 0.00 45.23 2.40
2208 5817 2.682856 TGAACAGCGGGATTGCTAAATC 59.317 45.455 0.00 0.00 45.23 2.17
2209 5818 2.722094 TGAACAGCGGGATTGCTAAAT 58.278 42.857 0.00 0.00 45.23 1.40
2210 5819 2.192664 TGAACAGCGGGATTGCTAAA 57.807 45.000 0.00 0.00 45.23 1.85
2211 5820 2.192664 TTGAACAGCGGGATTGCTAA 57.807 45.000 0.00 0.00 45.23 3.09
2212 5821 1.810151 GTTTGAACAGCGGGATTGCTA 59.190 47.619 0.00 0.00 45.23 3.49
2217 5826 1.369625 GATCGTTTGAACAGCGGGAT 58.630 50.000 0.00 0.00 0.00 3.85
2222 5831 4.946784 ACTATTGGATCGTTTGAACAGC 57.053 40.909 0.00 0.00 0.00 4.40
2223 5832 7.333423 TCCTTAACTATTGGATCGTTTGAACAG 59.667 37.037 0.00 0.00 0.00 3.16
2252 5861 3.561725 GGTTGCGGAAGAATAATCAGAGG 59.438 47.826 0.00 0.00 0.00 3.69
2257 5866 5.248870 ACAATGGTTGCGGAAGAATAATC 57.751 39.130 0.00 0.00 0.00 1.75
2261 5870 4.321675 GGTTAACAATGGTTGCGGAAGAAT 60.322 41.667 8.10 0.00 37.88 2.40
2268 5877 1.611491 ACCAGGTTAACAATGGTTGCG 59.389 47.619 22.52 5.66 44.98 4.85
2352 5962 8.458843 CCTACAAAATTACTACCACATGAAAGG 58.541 37.037 0.00 0.35 0.00 3.11
2362 5972 5.123936 CCCTGCTCCTACAAAATTACTACC 58.876 45.833 0.00 0.00 0.00 3.18
2439 6060 2.109181 GAGCGGCCAGGACCATAC 59.891 66.667 2.24 0.00 0.00 2.39
2450 6071 0.378610 GCAGGTAATTCTTGAGCGGC 59.621 55.000 0.00 0.00 0.00 6.53
2462 6083 4.760530 AGCAGTATGAGAATGCAGGTAA 57.239 40.909 1.50 0.00 42.45 2.85
2464 6085 3.708631 ACTAGCAGTATGAGAATGCAGGT 59.291 43.478 1.50 0.00 42.45 4.00
2545 6166 2.353011 CCAAATGCATCGGCTGAAAAGT 60.353 45.455 0.00 0.00 41.91 2.66
2585 6206 4.770795 CTCTTGTATTCCCAACCTACCAG 58.229 47.826 0.00 0.00 0.00 4.00
2592 6213 2.026262 TCCAGGCTCTTGTATTCCCAAC 60.026 50.000 0.00 0.00 0.00 3.77
2632 6253 4.526770 TGAGCATCATGTCCGCAG 57.473 55.556 0.00 0.00 42.56 5.18
2713 6334 4.075682 TCACCAAAATCGCTGGATTACAA 58.924 39.130 0.00 0.00 41.99 2.41
2721 6346 0.095935 CGAGCTCACCAAAATCGCTG 59.904 55.000 15.40 0.00 0.00 5.18
2723 6348 0.371645 CTCGAGCTCACCAAAATCGC 59.628 55.000 15.40 0.00 33.57 4.58
2725 6365 1.442769 TGCTCGAGCTCACCAAAATC 58.557 50.000 35.27 5.18 42.66 2.17
2732 6372 1.931906 TGATGATTGCTCGAGCTCAC 58.068 50.000 35.27 24.79 42.66 3.51
2742 6382 2.048444 TGGCTCTCCTTGATGATTGC 57.952 50.000 0.00 0.00 0.00 3.56
2754 6394 8.778358 CCACATAAGACTTTTATTATGGCTCTC 58.222 37.037 9.12 0.00 41.57 3.20
2755 6395 7.721399 CCCACATAAGACTTTTATTATGGCTCT 59.279 37.037 9.12 0.00 41.57 4.09
2756 6396 7.502561 ACCCACATAAGACTTTTATTATGGCTC 59.497 37.037 9.12 0.00 41.57 4.70
2757 6397 7.354312 ACCCACATAAGACTTTTATTATGGCT 58.646 34.615 9.12 0.00 41.57 4.75
2758 6398 7.582667 ACCCACATAAGACTTTTATTATGGC 57.417 36.000 9.12 0.00 41.57 4.40
2764 6404 9.758651 GAAACAAAACCCACATAAGACTTTTAT 57.241 29.630 0.00 0.00 0.00 1.40
2847 6506 6.322712 CACCTTCTTCTAGAATGTAGTAGGCT 59.677 42.308 5.44 0.00 32.52 4.58
2871 6530 1.511254 CGACGCGTCATCGAGAACA 60.511 57.895 35.71 0.00 42.25 3.18
3025 6684 1.851304 ACAATGGGATCAATGGCGTT 58.149 45.000 0.00 0.00 0.00 4.84
3105 6764 1.134280 AGATCACATACTGCACCCTGC 60.134 52.381 0.00 0.00 45.29 4.85
3299 6962 7.229581 TGATCCTCTTCATCAGATATGACAG 57.770 40.000 0.00 0.00 0.00 3.51
3408 7107 3.120923 GGAACAAGCATGAAAAATGTGCG 60.121 43.478 0.00 0.00 43.37 5.34
3421 7120 1.798223 CAACGATCTTCGGAACAAGCA 59.202 47.619 1.69 0.00 45.59 3.91
3611 7310 1.078708 GAACCCGAAATCCTCCGCA 60.079 57.895 0.00 0.00 0.00 5.69
3704 7403 0.036306 CAAAGTAGGGGGAGTGCGTT 59.964 55.000 0.00 0.00 0.00 4.84
3722 7421 1.139816 GCGCATCTTCGTCGATCACA 61.140 55.000 0.30 0.00 0.00 3.58
3896 7595 3.067480 GCAATGGTGGGATGGCGTG 62.067 63.158 0.00 0.00 0.00 5.34
3902 7601 9.954191 CTGTAAGAGTACATGCAATGGTGGGAT 62.954 44.444 0.00 0.00 43.95 3.85
3920 7619 4.752101 CGGAATATGAAAGGGCTGTAAGAG 59.248 45.833 0.00 0.00 34.07 2.85
3926 7625 1.679139 TGCGGAATATGAAAGGGCTG 58.321 50.000 0.00 0.00 0.00 4.85
3930 7629 5.659463 TCCAAAAATGCGGAATATGAAAGG 58.341 37.500 0.00 0.00 0.00 3.11
3931 7630 7.775397 AATCCAAAAATGCGGAATATGAAAG 57.225 32.000 0.00 0.00 34.22 2.62
3932 7631 8.449397 CAAAATCCAAAAATGCGGAATATGAAA 58.551 29.630 0.00 0.00 34.22 2.69
3933 7632 7.413877 GCAAAATCCAAAAATGCGGAATATGAA 60.414 33.333 0.00 0.00 34.22 2.57
3934 7633 6.036953 GCAAAATCCAAAAATGCGGAATATGA 59.963 34.615 0.00 0.00 34.22 2.15
3935 7634 6.193761 GCAAAATCCAAAAATGCGGAATATG 58.806 36.000 0.00 0.00 34.22 1.78
3936 7635 6.362210 GCAAAATCCAAAAATGCGGAATAT 57.638 33.333 0.00 0.00 34.22 1.28
3937 7636 5.793026 GCAAAATCCAAAAATGCGGAATA 57.207 34.783 0.00 0.00 34.22 1.75
3938 7637 4.683501 GCAAAATCCAAAAATGCGGAAT 57.316 36.364 0.00 0.00 34.22 3.01
3943 7642 3.421560 GCAAACGCAAAATCCAAAAATGC 59.578 39.130 0.00 0.00 0.00 3.56
3944 7643 4.437171 GTGCAAACGCAAAATCCAAAAATG 59.563 37.500 0.00 0.00 42.17 2.32
3945 7644 4.095483 TGTGCAAACGCAAAATCCAAAAAT 59.905 33.333 0.00 0.00 42.17 1.82
3946 7645 3.436704 TGTGCAAACGCAAAATCCAAAAA 59.563 34.783 0.00 0.00 42.17 1.94
3947 7646 3.002791 TGTGCAAACGCAAAATCCAAAA 58.997 36.364 0.00 0.00 42.17 2.44
3948 7647 2.349886 GTGTGCAAACGCAAAATCCAAA 59.650 40.909 0.00 0.00 42.17 3.28
3949 7648 1.929836 GTGTGCAAACGCAAAATCCAA 59.070 42.857 0.00 0.00 42.17 3.53
3950 7649 1.565305 GTGTGCAAACGCAAAATCCA 58.435 45.000 0.00 0.00 42.17 3.41
3951 7650 0.858583 GGTGTGCAAACGCAAAATCC 59.141 50.000 0.00 0.00 42.17 3.01
3952 7651 0.502275 CGGTGTGCAAACGCAAAATC 59.498 50.000 0.00 0.00 42.17 2.17
3953 7652 0.873743 CCGGTGTGCAAACGCAAAAT 60.874 50.000 0.00 0.00 42.17 1.82
3954 7653 1.517257 CCGGTGTGCAAACGCAAAA 60.517 52.632 0.00 0.00 42.17 2.44
3955 7654 2.103143 CCGGTGTGCAAACGCAAA 59.897 55.556 0.00 0.00 42.17 3.68
3956 7655 3.134792 ACCGGTGTGCAAACGCAA 61.135 55.556 6.12 0.00 42.17 4.85
3957 7656 3.882013 CACCGGTGTGCAAACGCA 61.882 61.111 26.95 0.00 35.31 5.24
3958 7657 2.400896 ATTCACCGGTGTGCAAACGC 62.401 55.000 32.74 0.00 42.46 4.84
3959 7658 0.030101 AATTCACCGGTGTGCAAACG 59.970 50.000 32.74 6.19 42.46 3.60
3960 7659 1.066303 TGAATTCACCGGTGTGCAAAC 59.934 47.619 32.74 19.66 42.46 2.93
3961 7660 1.336440 CTGAATTCACCGGTGTGCAAA 59.664 47.619 32.74 20.55 42.46 3.68
3962 7661 0.950836 CTGAATTCACCGGTGTGCAA 59.049 50.000 32.74 20.92 42.46 4.08
3963 7662 1.514678 GCTGAATTCACCGGTGTGCA 61.515 55.000 32.74 23.00 42.46 4.57
3964 7663 1.210155 GCTGAATTCACCGGTGTGC 59.790 57.895 32.74 22.14 42.46 4.57
3965 7664 0.950836 TTGCTGAATTCACCGGTGTG 59.049 50.000 32.74 17.37 44.18 3.82
3966 7665 1.686355 TTTGCTGAATTCACCGGTGT 58.314 45.000 32.74 15.56 0.00 4.16
3967 7666 2.791383 TTTTGCTGAATTCACCGGTG 57.209 45.000 29.26 29.26 0.00 4.94
3968 7667 3.320541 TGAATTTTGCTGAATTCACCGGT 59.679 39.130 18.07 0.00 45.90 5.28
3969 7668 3.911868 TGAATTTTGCTGAATTCACCGG 58.088 40.909 18.07 0.00 45.90 5.28
3970 7669 3.922240 CCTGAATTTTGCTGAATTCACCG 59.078 43.478 18.07 12.31 45.90 4.94
3971 7670 4.248058 CCCTGAATTTTGCTGAATTCACC 58.752 43.478 18.07 0.00 45.90 4.02
3972 7671 4.886579 ACCCTGAATTTTGCTGAATTCAC 58.113 39.130 18.07 2.70 45.90 3.18
3974 7673 5.540911 TGAACCCTGAATTTTGCTGAATTC 58.459 37.500 14.53 14.53 43.22 2.17
3975 7674 5.549742 TGAACCCTGAATTTTGCTGAATT 57.450 34.783 0.00 0.00 32.16 2.17
3976 7675 5.549742 TTGAACCCTGAATTTTGCTGAAT 57.450 34.783 0.00 0.00 0.00 2.57
3977 7676 5.549742 ATTGAACCCTGAATTTTGCTGAA 57.450 34.783 0.00 0.00 0.00 3.02
3978 7677 5.549742 AATTGAACCCTGAATTTTGCTGA 57.450 34.783 0.00 0.00 0.00 4.26
3979 7678 6.622833 AAAATTGAACCCTGAATTTTGCTG 57.377 33.333 0.00 0.00 39.28 4.41
4117 7816 8.980481 ATTCGTTGGAATATTAGTGAAAGGAT 57.020 30.769 0.00 0.00 41.05 3.24
4118 7817 8.673711 CAATTCGTTGGAATATTAGTGAAAGGA 58.326 33.333 0.00 0.00 41.99 3.36
4119 7818 7.432252 GCAATTCGTTGGAATATTAGTGAAAGG 59.568 37.037 0.00 0.00 41.99 3.11
4120 7819 7.967854 TGCAATTCGTTGGAATATTAGTGAAAG 59.032 33.333 0.00 0.00 41.99 2.62
4121 7820 7.753132 GTGCAATTCGTTGGAATATTAGTGAAA 59.247 33.333 0.00 0.00 41.99 2.69
4122 7821 7.120579 AGTGCAATTCGTTGGAATATTAGTGAA 59.879 33.333 0.00 0.00 41.99 3.18
4123 7822 6.597672 AGTGCAATTCGTTGGAATATTAGTGA 59.402 34.615 0.00 0.00 41.99 3.41
4124 7823 6.785191 AGTGCAATTCGTTGGAATATTAGTG 58.215 36.000 0.00 0.00 41.99 2.74
4125 7824 7.391148 AAGTGCAATTCGTTGGAATATTAGT 57.609 32.000 0.00 0.00 41.99 2.24
4126 7825 7.967854 TGAAAGTGCAATTCGTTGGAATATTAG 59.032 33.333 0.00 0.00 41.99 1.73
4127 7826 7.821652 TGAAAGTGCAATTCGTTGGAATATTA 58.178 30.769 0.00 0.00 41.99 0.98
4128 7827 6.686630 TGAAAGTGCAATTCGTTGGAATATT 58.313 32.000 0.00 0.00 41.99 1.28
4129 7828 6.266168 TGAAAGTGCAATTCGTTGGAATAT 57.734 33.333 0.00 0.00 41.99 1.28
4130 7829 5.697473 TGAAAGTGCAATTCGTTGGAATA 57.303 34.783 0.00 0.00 41.99 1.75
4131 7830 4.582701 TGAAAGTGCAATTCGTTGGAAT 57.417 36.364 0.00 0.00 44.69 3.01
4132 7831 4.377839 TTGAAAGTGCAATTCGTTGGAA 57.622 36.364 0.00 0.00 36.41 3.53
4133 7832 4.377839 TTTGAAAGTGCAATTCGTTGGA 57.622 36.364 0.00 0.00 0.00 3.53
4134 7833 4.507388 ACATTTGAAAGTGCAATTCGTTGG 59.493 37.500 0.00 0.00 0.00 3.77
4135 7834 5.640218 ACATTTGAAAGTGCAATTCGTTG 57.360 34.783 0.00 4.61 0.00 4.10
4136 7835 7.867403 AGATAACATTTGAAAGTGCAATTCGTT 59.133 29.630 0.00 5.09 0.00 3.85
4137 7836 7.370383 AGATAACATTTGAAAGTGCAATTCGT 58.630 30.769 0.00 0.00 0.00 3.85
4138 7837 7.801547 AGATAACATTTGAAAGTGCAATTCG 57.198 32.000 0.00 0.00 0.00 3.34
4170 7869 9.265901 TCAAACTTTGTTGAGAAAAATGTGAAA 57.734 25.926 1.44 0.00 32.56 2.69
4171 7870 8.824159 TCAAACTTTGTTGAGAAAAATGTGAA 57.176 26.923 1.44 0.00 32.56 3.18
4183 7882 7.384439 TGTGTAATCACTCAAACTTTGTTGA 57.616 32.000 9.57 9.57 44.14 3.18
4184 7883 7.914871 TGATGTGTAATCACTCAAACTTTGTTG 59.085 33.333 1.44 1.48 44.14 3.33
4185 7884 7.995289 TGATGTGTAATCACTCAAACTTTGTT 58.005 30.769 1.44 0.00 44.14 2.83
4186 7885 7.566760 TGATGTGTAATCACTCAAACTTTGT 57.433 32.000 1.44 0.00 44.14 2.83
4187 7886 9.467258 AATTGATGTGTAATCACTCAAACTTTG 57.533 29.630 12.87 0.00 44.14 2.77
4189 7888 9.683069 GAAATTGATGTGTAATCACTCAAACTT 57.317 29.630 12.87 10.62 44.14 2.66
4190 7889 8.849168 TGAAATTGATGTGTAATCACTCAAACT 58.151 29.630 12.87 7.05 44.14 2.66
4191 7890 9.121517 CTGAAATTGATGTGTAATCACTCAAAC 57.878 33.333 12.87 9.92 44.14 2.93
4192 7891 9.065798 TCTGAAATTGATGTGTAATCACTCAAA 57.934 29.630 12.87 2.26 44.14 2.69
4193 7892 8.620116 TCTGAAATTGATGTGTAATCACTCAA 57.380 30.769 11.95 11.95 44.14 3.02
4194 7893 8.620116 TTCTGAAATTGATGTGTAATCACTCA 57.380 30.769 0.00 0.00 44.14 3.41
4195 7894 9.334693 GTTTCTGAAATTGATGTGTAATCACTC 57.665 33.333 6.06 0.00 44.14 3.51
4196 7895 8.849168 TGTTTCTGAAATTGATGTGTAATCACT 58.151 29.630 6.06 0.00 44.14 3.41
4197 7896 8.905702 GTGTTTCTGAAATTGATGTGTAATCAC 58.094 33.333 6.06 1.69 44.08 3.06
4198 7897 8.849168 AGTGTTTCTGAAATTGATGTGTAATCA 58.151 29.630 6.06 0.00 0.00 2.57
4201 7900 9.944663 GTTAGTGTTTCTGAAATTGATGTGTAA 57.055 29.630 6.06 0.00 0.00 2.41
4202 7901 8.564574 GGTTAGTGTTTCTGAAATTGATGTGTA 58.435 33.333 6.06 0.00 0.00 2.90
4203 7902 7.425606 GGTTAGTGTTTCTGAAATTGATGTGT 58.574 34.615 6.06 0.00 0.00 3.72
4204 7903 6.578545 CGGTTAGTGTTTCTGAAATTGATGTG 59.421 38.462 6.06 0.00 0.00 3.21
4205 7904 6.485313 TCGGTTAGTGTTTCTGAAATTGATGT 59.515 34.615 6.06 0.00 0.00 3.06
4206 7905 6.898041 TCGGTTAGTGTTTCTGAAATTGATG 58.102 36.000 6.06 0.00 0.00 3.07
4207 7906 6.149474 CCTCGGTTAGTGTTTCTGAAATTGAT 59.851 38.462 6.06 0.00 0.00 2.57
4208 7907 5.468746 CCTCGGTTAGTGTTTCTGAAATTGA 59.531 40.000 6.06 0.00 0.00 2.57
4209 7908 5.468746 TCCTCGGTTAGTGTTTCTGAAATTG 59.531 40.000 6.06 0.00 0.00 2.32
4210 7909 5.617252 TCCTCGGTTAGTGTTTCTGAAATT 58.383 37.500 6.06 0.00 0.00 1.82
4211 7910 5.223449 TCCTCGGTTAGTGTTTCTGAAAT 57.777 39.130 6.06 0.00 0.00 2.17
4212 7911 4.675976 TCCTCGGTTAGTGTTTCTGAAA 57.324 40.909 0.00 0.00 0.00 2.69
4213 7912 4.675976 TTCCTCGGTTAGTGTTTCTGAA 57.324 40.909 0.00 0.00 0.00 3.02
4214 7913 4.141892 TGTTTCCTCGGTTAGTGTTTCTGA 60.142 41.667 0.00 0.00 0.00 3.27
4215 7914 4.124238 TGTTTCCTCGGTTAGTGTTTCTG 58.876 43.478 0.00 0.00 0.00 3.02
4216 7915 4.411256 TGTTTCCTCGGTTAGTGTTTCT 57.589 40.909 0.00 0.00 0.00 2.52
4217 7916 5.237779 TGAATGTTTCCTCGGTTAGTGTTTC 59.762 40.000 0.00 0.00 0.00 2.78
4218 7917 5.127491 TGAATGTTTCCTCGGTTAGTGTTT 58.873 37.500 0.00 0.00 0.00 2.83
4219 7918 4.710324 TGAATGTTTCCTCGGTTAGTGTT 58.290 39.130 0.00 0.00 0.00 3.32
4220 7919 4.345859 TGAATGTTTCCTCGGTTAGTGT 57.654 40.909 0.00 0.00 0.00 3.55
4221 7920 4.513692 TGTTGAATGTTTCCTCGGTTAGTG 59.486 41.667 0.00 0.00 0.00 2.74
4222 7921 4.710324 TGTTGAATGTTTCCTCGGTTAGT 58.290 39.130 0.00 0.00 0.00 2.24
4223 7922 5.880054 ATGTTGAATGTTTCCTCGGTTAG 57.120 39.130 0.00 0.00 0.00 2.34
4224 7923 6.231951 TGTATGTTGAATGTTTCCTCGGTTA 58.768 36.000 0.00 0.00 0.00 2.85
4225 7924 5.067273 TGTATGTTGAATGTTTCCTCGGTT 58.933 37.500 0.00 0.00 0.00 4.44
4226 7925 4.647611 TGTATGTTGAATGTTTCCTCGGT 58.352 39.130 0.00 0.00 0.00 4.69
4227 7926 5.818136 ATGTATGTTGAATGTTTCCTCGG 57.182 39.130 0.00 0.00 0.00 4.63
4228 7927 6.033831 GCAAATGTATGTTGAATGTTTCCTCG 59.966 38.462 0.00 0.00 0.00 4.63
4229 7928 6.867816 TGCAAATGTATGTTGAATGTTTCCTC 59.132 34.615 0.00 0.00 0.00 3.71
4230 7929 6.646240 GTGCAAATGTATGTTGAATGTTTCCT 59.354 34.615 0.00 0.00 0.00 3.36
4231 7930 6.399880 CGTGCAAATGTATGTTGAATGTTTCC 60.400 38.462 0.00 0.00 0.00 3.13
4232 7931 6.143758 ACGTGCAAATGTATGTTGAATGTTTC 59.856 34.615 0.00 0.00 30.85 2.78
4233 7932 5.982516 ACGTGCAAATGTATGTTGAATGTTT 59.017 32.000 0.00 0.00 30.85 2.83
4234 7933 5.527951 ACGTGCAAATGTATGTTGAATGTT 58.472 33.333 0.00 0.00 30.85 2.71
4235 7934 5.119931 ACGTGCAAATGTATGTTGAATGT 57.880 34.783 0.00 0.00 30.22 2.71
4236 7935 7.253717 CCAATACGTGCAAATGTATGTTGAATG 60.254 37.037 0.00 3.14 31.89 2.67
4237 7936 6.751425 CCAATACGTGCAAATGTATGTTGAAT 59.249 34.615 0.00 0.00 31.89 2.57
4238 7937 6.072452 TCCAATACGTGCAAATGTATGTTGAA 60.072 34.615 0.00 0.00 31.89 2.69
4239 7938 5.412904 TCCAATACGTGCAAATGTATGTTGA 59.587 36.000 0.00 3.98 31.89 3.18
4240 7939 5.635866 TCCAATACGTGCAAATGTATGTTG 58.364 37.500 0.00 5.35 31.89 3.33
4241 7940 5.888691 TCCAATACGTGCAAATGTATGTT 57.111 34.783 0.00 0.00 31.89 2.71
4242 7941 5.888691 TTCCAATACGTGCAAATGTATGT 57.111 34.783 0.00 2.04 31.89 2.29
4243 7942 9.462174 AATAATTCCAATACGTGCAAATGTATG 57.538 29.630 0.00 4.08 31.89 2.39
4246 7945 9.862371 TTAAATAATTCCAATACGTGCAAATGT 57.138 25.926 0.00 0.00 0.00 2.71
4250 7949 9.692749 TGTTTTAAATAATTCCAATACGTGCAA 57.307 25.926 0.00 0.00 0.00 4.08
4251 7950 9.862371 ATGTTTTAAATAATTCCAATACGTGCA 57.138 25.926 0.00 0.00 0.00 4.57
4370 8069 9.567776 TCACAAACTTCAATTTAGTCCTTCATA 57.432 29.630 0.00 0.00 0.00 2.15
4371 8070 8.463930 TCACAAACTTCAATTTAGTCCTTCAT 57.536 30.769 0.00 0.00 0.00 2.57
4372 8071 7.873719 TCACAAACTTCAATTTAGTCCTTCA 57.126 32.000 0.00 0.00 0.00 3.02
4373 8072 9.750125 ATTTCACAAACTTCAATTTAGTCCTTC 57.250 29.630 0.00 0.00 0.00 3.46
4409 8108 9.199982 GTCACATTCAATCAATTTCAGAAACAT 57.800 29.630 0.00 0.00 0.00 2.71
4410 8109 8.196103 TGTCACATTCAATCAATTTCAGAAACA 58.804 29.630 0.00 0.00 0.00 2.83
4411 8110 8.578308 TGTCACATTCAATCAATTTCAGAAAC 57.422 30.769 0.00 0.00 0.00 2.78
4412 8111 9.597170 TTTGTCACATTCAATCAATTTCAGAAA 57.403 25.926 0.00 0.00 0.00 2.52
4413 8112 9.597170 TTTTGTCACATTCAATCAATTTCAGAA 57.403 25.926 0.00 0.00 0.00 3.02
4414 8113 9.597170 TTTTTGTCACATTCAATCAATTTCAGA 57.403 25.926 0.00 0.00 0.00 3.27
4629 8328 7.891183 TTTCATCTTTCCGTTTTCACAAAAA 57.109 28.000 0.00 0.00 31.13 1.94
4630 8329 8.485976 AATTTCATCTTTCCGTTTTCACAAAA 57.514 26.923 0.00 0.00 0.00 2.44
4631 8330 8.386606 CAAATTTCATCTTTCCGTTTTCACAAA 58.613 29.630 0.00 0.00 0.00 2.83
4632 8331 7.010923 CCAAATTTCATCTTTCCGTTTTCACAA 59.989 33.333 0.00 0.00 0.00 3.33
4633 8332 6.478344 CCAAATTTCATCTTTCCGTTTTCACA 59.522 34.615 0.00 0.00 0.00 3.58
4634 8333 6.563939 GCCAAATTTCATCTTTCCGTTTTCAC 60.564 38.462 0.00 0.00 0.00 3.18
4635 8334 5.465056 GCCAAATTTCATCTTTCCGTTTTCA 59.535 36.000 0.00 0.00 0.00 2.69
4636 8335 5.696270 AGCCAAATTTCATCTTTCCGTTTTC 59.304 36.000 0.00 0.00 0.00 2.29
4637 8336 5.466393 CAGCCAAATTTCATCTTTCCGTTTT 59.534 36.000 0.00 0.00 0.00 2.43
4638 8337 4.990426 CAGCCAAATTTCATCTTTCCGTTT 59.010 37.500 0.00 0.00 0.00 3.60
4639 8338 4.280677 TCAGCCAAATTTCATCTTTCCGTT 59.719 37.500 0.00 0.00 0.00 4.44
4640 8339 3.826157 TCAGCCAAATTTCATCTTTCCGT 59.174 39.130 0.00 0.00 0.00 4.69
4641 8340 4.439305 TCAGCCAAATTTCATCTTTCCG 57.561 40.909 0.00 0.00 0.00 4.30
4642 8341 7.495135 TTTTTCAGCCAAATTTCATCTTTCC 57.505 32.000 0.00 0.00 0.00 3.13
4643 8342 9.603298 GAATTTTTCAGCCAAATTTCATCTTTC 57.397 29.630 0.00 0.00 34.61 2.62
4644 8343 9.122779 TGAATTTTTCAGCCAAATTTCATCTTT 57.877 25.926 0.00 0.00 34.61 2.52
4645 8344 8.680039 TGAATTTTTCAGCCAAATTTCATCTT 57.320 26.923 0.00 0.00 34.61 2.40
4660 8359 6.790232 AGAAACCTTGGTCTGAATTTTTCA 57.210 33.333 0.00 0.00 38.17 2.69
4661 8360 7.763985 TCAAAGAAACCTTGGTCTGAATTTTTC 59.236 33.333 0.00 0.00 0.00 2.29
4662 8361 7.619965 TCAAAGAAACCTTGGTCTGAATTTTT 58.380 30.769 0.00 0.00 0.00 1.94
4663 8362 7.181569 TCAAAGAAACCTTGGTCTGAATTTT 57.818 32.000 0.00 0.00 0.00 1.82
4664 8363 6.790232 TCAAAGAAACCTTGGTCTGAATTT 57.210 33.333 0.00 0.00 0.00 1.82
4665 8364 6.790232 TTCAAAGAAACCTTGGTCTGAATT 57.210 33.333 0.00 0.00 0.00 2.17
4666 8365 6.983906 ATTCAAAGAAACCTTGGTCTGAAT 57.016 33.333 0.00 1.59 0.00 2.57
4667 8366 6.016276 GCTATTCAAAGAAACCTTGGTCTGAA 60.016 38.462 0.00 0.00 0.00 3.02
4668 8367 5.473504 GCTATTCAAAGAAACCTTGGTCTGA 59.526 40.000 0.00 0.00 0.00 3.27
4669 8368 5.474876 AGCTATTCAAAGAAACCTTGGTCTG 59.525 40.000 0.00 0.00 0.00 3.51
4670 8369 5.635120 AGCTATTCAAAGAAACCTTGGTCT 58.365 37.500 0.00 0.00 0.00 3.85
4671 8370 5.966742 AGCTATTCAAAGAAACCTTGGTC 57.033 39.130 0.00 0.00 0.00 4.02
4672 8371 6.323739 TCAAAGCTATTCAAAGAAACCTTGGT 59.676 34.615 0.00 0.00 0.00 3.67
4673 8372 6.748132 TCAAAGCTATTCAAAGAAACCTTGG 58.252 36.000 0.00 0.00 0.00 3.61
4674 8373 8.647143 TTTCAAAGCTATTCAAAGAAACCTTG 57.353 30.769 0.00 0.00 0.00 3.61
4675 8374 9.836864 ATTTTCAAAGCTATTCAAAGAAACCTT 57.163 25.926 0.00 0.00 0.00 3.50
4705 8404 9.993454 TGACATATTTTGATCCAAATTTGTTCA 57.007 25.926 21.17 17.84 33.19 3.18
4707 8406 9.775854 TGTGACATATTTTGATCCAAATTTGTT 57.224 25.926 21.17 10.97 33.19 2.83
4708 8407 9.206870 GTGTGACATATTTTGATCCAAATTTGT 57.793 29.630 20.69 20.69 33.19 2.83
4709 8408 9.205719 TGTGTGACATATTTTGATCCAAATTTG 57.794 29.630 11.40 11.40 33.19 2.32
4710 8409 9.426837 CTGTGTGACATATTTTGATCCAAATTT 57.573 29.630 9.80 0.36 33.19 1.82
4711 8410 8.587608 ACTGTGTGACATATTTTGATCCAAATT 58.412 29.630 9.80 0.00 33.19 1.82
4712 8411 8.125978 ACTGTGTGACATATTTTGATCCAAAT 57.874 30.769 9.49 9.49 33.19 2.32
4713 8412 7.523293 ACTGTGTGACATATTTTGATCCAAA 57.477 32.000 0.00 0.00 0.00 3.28
4714 8413 7.523293 AACTGTGTGACATATTTTGATCCAA 57.477 32.000 0.00 0.00 0.00 3.53
4715 8414 7.523293 AAACTGTGTGACATATTTTGATCCA 57.477 32.000 0.00 0.00 0.00 3.41
4716 8415 8.816640 AAAAACTGTGTGACATATTTTGATCC 57.183 30.769 0.00 0.00 31.09 3.36
4772 8471 9.603921 ACAGACAAAATTTCAGAAACATTTCAT 57.396 25.926 7.10 0.00 39.61 2.57
4773 8472 9.086336 GACAGACAAAATTTCAGAAACATTTCA 57.914 29.630 7.10 0.00 39.61 2.69
4774 8473 9.086336 TGACAGACAAAATTTCAGAAACATTTC 57.914 29.630 0.00 0.00 37.45 2.17
4775 8474 9.434420 TTGACAGACAAAATTTCAGAAACATTT 57.566 25.926 0.00 0.50 35.39 2.32
4776 8475 9.603921 ATTGACAGACAAAATTTCAGAAACATT 57.396 25.926 0.00 0.00 42.03 2.71
4777 8476 9.037737 CATTGACAGACAAAATTTCAGAAACAT 57.962 29.630 0.00 0.00 42.03 2.71
4778 8477 7.492020 CCATTGACAGACAAAATTTCAGAAACA 59.508 33.333 0.00 0.00 42.03 2.83
4779 8478 7.042523 CCCATTGACAGACAAAATTTCAGAAAC 60.043 37.037 0.00 0.00 42.03 2.78
4780 8479 6.985645 CCCATTGACAGACAAAATTTCAGAAA 59.014 34.615 0.00 0.00 42.03 2.52
4781 8480 6.098124 ACCCATTGACAGACAAAATTTCAGAA 59.902 34.615 0.00 0.00 42.03 3.02
4782 8481 5.598005 ACCCATTGACAGACAAAATTTCAGA 59.402 36.000 0.00 0.00 42.03 3.27
4783 8482 5.693104 CACCCATTGACAGACAAAATTTCAG 59.307 40.000 0.00 0.00 42.03 3.02
4784 8483 5.599732 CACCCATTGACAGACAAAATTTCA 58.400 37.500 0.00 0.00 42.03 2.69
4785 8484 4.448732 GCACCCATTGACAGACAAAATTTC 59.551 41.667 0.00 0.00 42.03 2.17
4786 8485 4.141756 TGCACCCATTGACAGACAAAATTT 60.142 37.500 0.00 0.00 42.03 1.82
4787 8486 3.387374 TGCACCCATTGACAGACAAAATT 59.613 39.130 0.00 0.00 42.03 1.82
4788 8487 2.964464 TGCACCCATTGACAGACAAAAT 59.036 40.909 0.00 0.00 42.03 1.82
4789 8488 2.382882 TGCACCCATTGACAGACAAAA 58.617 42.857 0.00 0.00 42.03 2.44
4790 8489 2.064434 TGCACCCATTGACAGACAAA 57.936 45.000 0.00 0.00 42.03 2.83
4791 8490 3.817187 TGCACCCATTGACAGACAA 57.183 47.368 0.00 0.00 42.95 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.