Multiple sequence alignment - TraesCS5A01G180000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G180000 chr5A 100.000 4258 0 0 1 4258 378551670 378555927 0.000000e+00 7864.0
1 TraesCS5A01G180000 chr5A 92.879 323 10 7 3945 4258 657285016 657284698 1.400000e-124 457.0
2 TraesCS5A01G180000 chr5B 89.373 2456 98 66 1 2373 325540476 325542851 0.000000e+00 2939.0
3 TraesCS5A01G180000 chr5B 89.382 1441 74 34 2473 3874 325542889 325544289 0.000000e+00 1740.0
4 TraesCS5A01G180000 chr5B 91.667 84 2 1 3876 3954 325544257 325544340 1.250000e-20 111.0
5 TraesCS5A01G180000 chr5D 94.152 1898 49 23 519 2362 286318609 286316720 0.000000e+00 2833.0
6 TraesCS5A01G180000 chr5D 92.232 1519 65 26 2474 3957 286316638 286315138 0.000000e+00 2102.0
7 TraesCS5A01G180000 chr5D 91.562 320 16 5 3949 4258 41035353 41035671 8.460000e-117 431.0
8 TraesCS5A01G180000 chr5D 82.888 374 19 13 36 383 286319043 286318689 1.160000e-75 294.0
9 TraesCS5A01G180000 chr5D 79.180 317 50 8 3956 4258 330569856 330570170 5.580000e-49 206.0
10 TraesCS5A01G180000 chr5D 97.500 40 1 0 3827 3866 286315193 286315154 7.640000e-08 69.4
11 TraesCS5A01G180000 chr1A 95.050 303 15 0 3956 4258 494892748 494892446 1.070000e-130 477.0
12 TraesCS5A01G180000 chr1A 89.623 318 19 8 3951 4258 545782256 545781943 3.990000e-105 392.0
13 TraesCS5A01G180000 chr3A 91.961 311 16 3 3957 4258 658057576 658057266 1.090000e-115 427.0
14 TraesCS5A01G180000 chr3A 90.000 310 20 5 3957 4258 67577366 67577060 1.440000e-104 390.0
15 TraesCS5A01G180000 chr7D 90.966 321 18 5 3948 4258 573820500 573820819 5.090000e-114 422.0
16 TraesCS5A01G180000 chr7D 85.256 312 33 8 3957 4258 118601396 118601088 4.130000e-80 309.0
17 TraesCS5A01G180000 chr7D 97.368 38 1 0 2406 2443 545223937 545223974 9.880000e-07 65.8
18 TraesCS5A01G180000 chr2A 90.968 310 18 4 3957 4258 584069596 584069903 3.960000e-110 409.0
19 TraesCS5A01G180000 chr4A 88.772 285 22 7 3957 4233 684277602 684277320 1.470000e-89 340.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G180000 chr5A 378551670 378555927 4257 False 7864.000000 7864 100.000000 1 4258 1 chr5A.!!$F1 4257
1 TraesCS5A01G180000 chr5B 325540476 325544340 3864 False 1596.666667 2939 90.140667 1 3954 3 chr5B.!!$F1 3953
2 TraesCS5A01G180000 chr5D 286315138 286319043 3905 True 1324.600000 2833 91.693000 36 3957 4 chr5D.!!$R1 3921

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 549 0.035176 GCCCTCTCTCATCCAGCATC 59.965 60.0 0.00 0.0 0.00 3.91 F
1360 1432 0.247067 GGAGTACTCGTTCGTCGACG 60.247 60.0 31.30 31.3 44.01 5.12 F
2538 2683 0.797249 AGTCGACGACGCATTGCTAC 60.797 55.0 21.44 0.0 37.67 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 1626 1.355066 GCGAGTAGTGGCAGTTCTGC 61.355 60.0 15.41 15.41 0.0 4.26 R
3183 3361 0.528466 TCGATCTGGTTGCTGCGATC 60.528 55.0 0.00 0.00 0.0 3.69 R
4007 4207 0.109723 CCGGTTTTGGAGTTGAGGGA 59.890 55.0 0.00 0.00 0.0 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.787435 TTAACACTTGGTTGTAGTATCATTTCT 57.213 29.630 0.00 0.00 40.73 2.52
51 52 4.720775 ATCATTTCTCCAAGATCCTCCC 57.279 45.455 0.00 0.00 0.00 4.30
52 53 3.463825 TCATTTCTCCAAGATCCTCCCA 58.536 45.455 0.00 0.00 0.00 4.37
53 54 3.457380 TCATTTCTCCAAGATCCTCCCAG 59.543 47.826 0.00 0.00 0.00 4.45
54 55 1.885049 TTCTCCAAGATCCTCCCAGG 58.115 55.000 0.00 0.00 36.46 4.45
119 120 2.042831 GCTGGTGGTGCAAGCTAGG 61.043 63.158 0.00 0.00 41.00 3.02
170 171 2.469516 CGGGTTTGCCGCCATCTAC 61.470 63.158 0.00 0.00 34.97 2.59
171 172 2.469516 GGGTTTGCCGCCATCTACG 61.470 63.158 0.00 0.00 34.97 3.51
206 209 3.114616 CTGTGCGCCGTCCTCAAG 61.115 66.667 4.18 0.00 0.00 3.02
221 224 1.795286 CTCAAGCGCGAGAAGAAGTTT 59.205 47.619 12.10 0.00 34.79 2.66
328 358 0.955919 GGGAAACGCAGTCTCCAAGG 60.956 60.000 3.97 0.00 45.00 3.61
385 420 2.364317 CCAGGAGCGAGAAGGGGA 60.364 66.667 0.00 0.00 0.00 4.81
388 423 1.684049 AGGAGCGAGAAGGGGAGTG 60.684 63.158 0.00 0.00 0.00 3.51
389 424 1.682684 GGAGCGAGAAGGGGAGTGA 60.683 63.158 0.00 0.00 0.00 3.41
390 425 1.258445 GGAGCGAGAAGGGGAGTGAA 61.258 60.000 0.00 0.00 0.00 3.18
391 426 0.608640 GAGCGAGAAGGGGAGTGAAA 59.391 55.000 0.00 0.00 0.00 2.69
392 427 1.208293 GAGCGAGAAGGGGAGTGAAAT 59.792 52.381 0.00 0.00 0.00 2.17
393 428 2.431057 GAGCGAGAAGGGGAGTGAAATA 59.569 50.000 0.00 0.00 0.00 1.40
394 429 3.041946 AGCGAGAAGGGGAGTGAAATAT 58.958 45.455 0.00 0.00 0.00 1.28
395 430 3.070302 AGCGAGAAGGGGAGTGAAATATC 59.930 47.826 0.00 0.00 0.00 1.63
396 431 3.643763 CGAGAAGGGGAGTGAAATATCG 58.356 50.000 0.00 0.00 0.00 2.92
397 432 3.553096 CGAGAAGGGGAGTGAAATATCGG 60.553 52.174 0.00 0.00 0.00 4.18
398 433 2.706190 AGAAGGGGAGTGAAATATCGGG 59.294 50.000 0.00 0.00 0.00 5.14
399 434 0.765510 AGGGGAGTGAAATATCGGGC 59.234 55.000 0.00 0.00 0.00 6.13
400 435 0.602905 GGGGAGTGAAATATCGGGCG 60.603 60.000 0.00 0.00 0.00 6.13
401 436 0.106149 GGGAGTGAAATATCGGGCGT 59.894 55.000 0.00 0.00 0.00 5.68
402 437 1.474498 GGGAGTGAAATATCGGGCGTT 60.474 52.381 0.00 0.00 0.00 4.84
403 438 1.597663 GGAGTGAAATATCGGGCGTTG 59.402 52.381 0.00 0.00 0.00 4.10
404 439 1.597663 GAGTGAAATATCGGGCGTTGG 59.402 52.381 0.00 0.00 0.00 3.77
428 463 2.284151 GTTTGGGTTGGGTGGGGT 59.716 61.111 0.00 0.00 0.00 4.95
429 464 2.137528 GTTTGGGTTGGGTGGGGTG 61.138 63.158 0.00 0.00 0.00 4.61
460 495 4.845580 CGGGTGGCAGGCAGCTAG 62.846 72.222 23.93 15.15 44.79 3.42
461 496 4.496336 GGGTGGCAGGCAGCTAGG 62.496 72.222 23.93 0.00 44.79 3.02
501 536 3.254024 ATGGTTTGCGTCGCCCTCT 62.254 57.895 15.88 0.00 0.00 3.69
502 537 3.119096 GGTTTGCGTCGCCCTCTC 61.119 66.667 15.88 0.81 0.00 3.20
503 538 2.048127 GTTTGCGTCGCCCTCTCT 60.048 61.111 15.88 0.00 0.00 3.10
509 544 2.121538 CGTCGCCCTCTCTCATCCA 61.122 63.158 0.00 0.00 0.00 3.41
510 545 1.739049 GTCGCCCTCTCTCATCCAG 59.261 63.158 0.00 0.00 0.00 3.86
511 546 2.130426 TCGCCCTCTCTCATCCAGC 61.130 63.158 0.00 0.00 0.00 4.85
512 547 2.429767 CGCCCTCTCTCATCCAGCA 61.430 63.158 0.00 0.00 0.00 4.41
513 548 1.756408 CGCCCTCTCTCATCCAGCAT 61.756 60.000 0.00 0.00 0.00 3.79
514 549 0.035176 GCCCTCTCTCATCCAGCATC 59.965 60.000 0.00 0.00 0.00 3.91
515 550 0.686224 CCCTCTCTCATCCAGCATCC 59.314 60.000 0.00 0.00 0.00 3.51
516 551 1.421480 CCTCTCTCATCCAGCATCCA 58.579 55.000 0.00 0.00 0.00 3.41
517 552 1.345089 CCTCTCTCATCCAGCATCCAG 59.655 57.143 0.00 0.00 0.00 3.86
567 606 0.462937 TGTGCGTGGATTTATCGGGG 60.463 55.000 0.00 0.00 0.00 5.73
806 863 4.803908 CGGCCTTCCCTTCCCTGC 62.804 72.222 0.00 0.00 0.00 4.85
864 936 3.605486 GCAATCAATCTCTTGCACGTTTC 59.395 43.478 2.60 0.00 45.50 2.78
894 966 4.850193 TCGGAGGTACGAGGGTTT 57.150 55.556 0.00 0.00 38.06 3.27
1359 1431 1.074752 AGGAGTACTCGTTCGTCGAC 58.925 55.000 16.56 5.18 44.01 4.20
1360 1432 0.247067 GGAGTACTCGTTCGTCGACG 60.247 60.000 31.30 31.30 44.01 5.12
1361 1433 0.851198 GAGTACTCGTTCGTCGACGC 60.851 60.000 32.19 18.46 44.01 5.19
1469 1553 4.840005 GGGCTTTCCTCCGGCGAG 62.840 72.222 9.30 3.68 35.72 5.03
1585 1669 2.993264 AGGTGTACACGGACGGGG 60.993 66.667 19.41 0.00 0.00 5.73
1894 1982 6.426980 ACGCGCATGATCATTATTCATTAT 57.573 33.333 5.73 0.00 31.50 1.28
1895 1983 6.253013 ACGCGCATGATCATTATTCATTATG 58.747 36.000 5.73 0.00 31.50 1.90
1896 1984 6.128200 ACGCGCATGATCATTATTCATTATGT 60.128 34.615 5.73 0.00 31.50 2.29
1897 1985 6.744082 CGCGCATGATCATTATTCATTATGTT 59.256 34.615 8.75 0.00 31.50 2.71
1956 2044 2.320587 GCAGCACTCGGTGGTTCTG 61.321 63.158 6.08 6.08 41.72 3.02
2122 2227 7.586714 TCATTCATTTTCCTATCGATCGATG 57.413 36.000 34.92 24.51 36.17 3.84
2254 2367 1.597461 CTTCCAGAACCCGGAGACC 59.403 63.158 0.73 0.00 33.01 3.85
2276 2389 4.473520 CGGCCCTTCTCATGCGGT 62.474 66.667 0.00 0.00 0.00 5.68
2317 2430 2.907897 GATCACGGGTCCTCGCCAAG 62.908 65.000 0.25 0.00 0.00 3.61
2363 2488 5.817296 TGCATCAATGAGAGGTAACATACAC 59.183 40.000 0.00 0.00 41.41 2.90
2367 2492 6.398095 TCAATGAGAGGTAACATACACACTG 58.602 40.000 0.00 0.00 41.41 3.66
2373 2498 7.177744 TGAGAGGTAACATACACACTGTTCATA 59.822 37.037 0.00 0.00 37.89 2.15
2376 2501 7.321153 AGGTAACATACACACTGTTCATACTC 58.679 38.462 0.00 0.00 37.89 2.59
2378 2503 5.638596 ACATACACACTGTTCATACTCGA 57.361 39.130 0.00 0.00 0.00 4.04
2379 2504 5.399858 ACATACACACTGTTCATACTCGAC 58.600 41.667 0.00 0.00 0.00 4.20
2380 2505 5.183331 ACATACACACTGTTCATACTCGACT 59.817 40.000 0.00 0.00 0.00 4.18
2381 2506 3.902150 ACACACTGTTCATACTCGACTG 58.098 45.455 0.00 0.00 0.00 3.51
2382 2507 3.318275 ACACACTGTTCATACTCGACTGT 59.682 43.478 0.00 0.00 0.00 3.55
2383 2508 4.517832 ACACACTGTTCATACTCGACTGTA 59.482 41.667 0.00 0.00 0.00 2.74
2384 2509 5.009310 ACACACTGTTCATACTCGACTGTAA 59.991 40.000 0.00 0.00 0.00 2.41
2385 2510 5.342525 CACACTGTTCATACTCGACTGTAAC 59.657 44.000 0.00 0.00 0.00 2.50
2388 2513 7.040892 ACACTGTTCATACTCGACTGTAACTTA 60.041 37.037 0.00 0.00 0.00 2.24
2391 2516 9.999009 CTGTTCATACTCGACTGTAACTTATTA 57.001 33.333 0.00 0.00 0.00 0.98
2392 2517 9.778993 TGTTCATACTCGACTGTAACTTATTAC 57.221 33.333 0.00 0.00 41.07 1.89
2399 2524 7.035840 TCGACTGTAACTTATTACTCCATCC 57.964 40.000 0.00 0.00 41.24 3.51
2400 2525 6.832384 TCGACTGTAACTTATTACTCCATCCT 59.168 38.462 0.00 0.00 41.24 3.24
2457 2582 8.649973 ACTAAATCAGCAGCAATTAGTACTAC 57.350 34.615 0.91 0.00 35.62 2.73
2458 2583 8.478877 ACTAAATCAGCAGCAATTAGTACTACT 58.521 33.333 0.91 0.00 35.62 2.57
2459 2584 9.967346 CTAAATCAGCAGCAATTAGTACTACTA 57.033 33.333 0.91 0.00 0.00 1.82
2461 2586 8.649973 AATCAGCAGCAATTAGTACTACTAAC 57.350 34.615 10.31 0.22 42.78 2.34
2462 2587 7.406031 TCAGCAGCAATTAGTACTACTAACT 57.594 36.000 10.31 0.00 42.78 2.24
2463 2588 7.837863 TCAGCAGCAATTAGTACTACTAACTT 58.162 34.615 10.31 4.93 42.78 2.66
2464 2589 7.974501 TCAGCAGCAATTAGTACTACTAACTTC 59.025 37.037 10.31 0.00 42.78 3.01
2465 2590 7.976734 CAGCAGCAATTAGTACTACTAACTTCT 59.023 37.037 10.31 0.00 42.78 2.85
2466 2591 7.976734 AGCAGCAATTAGTACTACTAACTTCTG 59.023 37.037 10.31 10.58 42.78 3.02
2467 2592 7.254151 GCAGCAATTAGTACTACTAACTTCTGC 60.254 40.741 19.29 19.29 42.78 4.26
2468 2593 7.976734 CAGCAATTAGTACTACTAACTTCTGCT 59.023 37.037 19.35 19.35 42.78 4.24
2469 2594 9.186837 AGCAATTAGTACTACTAACTTCTGCTA 57.813 33.333 21.42 0.58 42.78 3.49
2470 2595 9.235537 GCAATTAGTACTACTAACTTCTGCTAC 57.764 37.037 10.31 0.00 42.78 3.58
2471 2596 9.435802 CAATTAGTACTACTAACTTCTGCTACG 57.564 37.037 10.31 0.00 42.78 3.51
2494 2639 7.906160 ACGATACAACTTAGTAATTCATGTGC 58.094 34.615 0.00 0.00 0.00 4.57
2538 2683 0.797249 AGTCGACGACGCATTGCTAC 60.797 55.000 21.44 0.00 37.67 3.58
2588 2733 7.295196 TCCAGAGTTCTATCCAGGTACTACTAT 59.705 40.741 0.00 0.00 36.02 2.12
2589 2734 8.604184 CCAGAGTTCTATCCAGGTACTACTATA 58.396 40.741 0.00 0.00 36.02 1.31
2590 2735 9.661563 CAGAGTTCTATCCAGGTACTACTATAG 57.338 40.741 0.00 0.00 36.02 1.31
2591 2736 9.396351 AGAGTTCTATCCAGGTACTACTATAGT 57.604 37.037 10.87 10.87 42.68 2.12
2654 2802 8.685838 TCAAAATTTGTTAGCTAACAGTACCT 57.314 30.769 31.89 18.70 45.77 3.08
2844 2992 1.761174 GCCCTTCAACTCCCACTCA 59.239 57.895 0.00 0.00 0.00 3.41
2853 3001 0.833834 ACTCCCACTCACAGTCCCAG 60.834 60.000 0.00 0.00 0.00 4.45
2907 3071 4.202305 ACTCCCAAGTCTTTTCTCTCTGTG 60.202 45.833 0.00 0.00 0.00 3.66
2921 3085 7.767250 TTCTCTCTGTGTCTTATCTTTCTGA 57.233 36.000 0.00 0.00 0.00 3.27
2922 3086 7.953005 TCTCTCTGTGTCTTATCTTTCTGAT 57.047 36.000 0.00 0.00 39.11 2.90
2923 3087 7.770201 TCTCTCTGTGTCTTATCTTTCTGATG 58.230 38.462 0.00 0.00 36.65 3.07
3042 3206 3.890926 GCCCCTCCCATACAGGCC 61.891 72.222 0.00 0.00 37.66 5.19
3072 3236 4.794334 ACTACGATGACCAAGAGAGGTAT 58.206 43.478 0.00 0.00 43.38 2.73
3098 3266 6.972722 ACTACTCACTAGTTTCTCAAGTGTC 58.027 40.000 0.00 0.00 41.12 3.67
3103 3271 7.231722 ACTCACTAGTTTCTCAAGTGTCTGTAT 59.768 37.037 0.00 0.00 41.12 2.29
3112 3280 9.516314 TTTCTCAAGTGTCTGTATATATGTTCG 57.484 33.333 0.00 0.00 0.00 3.95
3113 3281 7.649057 TCTCAAGTGTCTGTATATATGTTCGG 58.351 38.462 0.00 0.00 0.00 4.30
3117 3287 9.343103 CAAGTGTCTGTATATATGTTCGGATAC 57.657 37.037 6.67 6.67 0.00 2.24
3157 3335 1.189403 GTTATCGAGCCAGTTCGTCG 58.811 55.000 3.84 0.00 41.22 5.12
3167 3345 2.131972 CCAGTTCGTCGTTGTTCATCA 58.868 47.619 0.00 0.00 0.00 3.07
3181 3359 6.478588 GTTGTTCATCATATGACTCGGTTTC 58.521 40.000 7.78 0.00 39.39 2.78
3183 3361 5.812127 TGTTCATCATATGACTCGGTTTCTG 59.188 40.000 7.78 0.00 39.39 3.02
3209 3388 1.066573 AGCAACCAGATCGAACTCCTG 60.067 52.381 0.00 0.00 0.00 3.86
3224 3403 2.273449 CTGCCGGAGAGCCCATTT 59.727 61.111 5.05 0.00 34.14 2.32
3256 3435 1.476110 GCCCACTGGAAACGGCATATA 60.476 52.381 0.00 0.00 41.25 0.86
3258 3437 2.878406 CCCACTGGAAACGGCATATAAG 59.122 50.000 0.00 0.00 41.93 1.73
3432 3612 3.771479 ACATAATGCAGAGGAGACACAGA 59.229 43.478 0.00 0.00 0.00 3.41
3437 3617 1.932604 GCAGAGGAGACACAGAACACG 60.933 57.143 0.00 0.00 0.00 4.49
3516 3699 6.389906 ACTTTACTAGCACATTCAAAATGGC 58.610 36.000 4.82 5.21 0.00 4.40
3589 3772 9.578576 ACAATGAATAGTCATATGCCAAATAGT 57.421 29.630 6.03 0.00 44.02 2.12
3689 3877 6.604735 AATAAACAGGAACATTAGCTAGCG 57.395 37.500 9.55 0.00 0.00 4.26
3774 3967 9.654663 ACTATTGATACTTACAACACTCCTTTC 57.345 33.333 0.00 0.00 0.00 2.62
3792 3985 5.415701 TCCTTTCTTGTATCATGCTTTGGTC 59.584 40.000 0.00 0.00 0.00 4.02
3795 3988 5.823209 TCTTGTATCATGCTTTGGTCATG 57.177 39.130 0.00 0.00 41.87 3.07
3796 3989 4.096833 TCTTGTATCATGCTTTGGTCATGC 59.903 41.667 0.00 0.00 40.69 4.06
3842 4037 9.780186 AAGAAGGAAAGTGTATAATGTATAGGC 57.220 33.333 0.00 0.00 0.00 3.93
3843 4038 8.934697 AGAAGGAAAGTGTATAATGTATAGGCA 58.065 33.333 0.00 0.00 0.00 4.75
3844 4039 9.209175 GAAGGAAAGTGTATAATGTATAGGCAG 57.791 37.037 0.00 0.00 0.00 4.85
3845 4040 7.162082 AGGAAAGTGTATAATGTATAGGCAGC 58.838 38.462 0.00 0.00 0.00 5.25
3846 4041 7.016661 AGGAAAGTGTATAATGTATAGGCAGCT 59.983 37.037 0.00 0.00 0.00 4.24
3848 4043 9.360093 GAAAGTGTATAATGTATAGGCAGCTAG 57.640 37.037 0.00 0.00 0.00 3.42
3849 4044 8.651589 AAGTGTATAATGTATAGGCAGCTAGA 57.348 34.615 0.00 0.00 0.00 2.43
3850 4045 8.651589 AGTGTATAATGTATAGGCAGCTAGAA 57.348 34.615 0.00 0.00 0.00 2.10
3853 4048 9.875691 TGTATAATGTATAGGCAGCTAGAAATG 57.124 33.333 0.00 0.00 0.00 2.32
3855 4050 8.783833 ATAATGTATAGGCAGCTAGAAATGTG 57.216 34.615 0.00 0.00 0.00 3.21
3858 4053 2.431954 AGGCAGCTAGAAATGTGCAT 57.568 45.000 0.00 0.00 37.68 3.96
3859 4054 3.565764 AGGCAGCTAGAAATGTGCATA 57.434 42.857 0.00 0.00 37.68 3.14
3860 4055 4.096190 AGGCAGCTAGAAATGTGCATAT 57.904 40.909 0.00 0.00 37.68 1.78
3861 4056 3.819337 AGGCAGCTAGAAATGTGCATATG 59.181 43.478 0.00 0.00 37.68 1.78
3862 4057 3.817084 GGCAGCTAGAAATGTGCATATGA 59.183 43.478 6.97 0.00 37.68 2.15
3863 4058 4.320057 GGCAGCTAGAAATGTGCATATGAC 60.320 45.833 6.97 2.74 37.68 3.06
3864 4059 4.514441 GCAGCTAGAAATGTGCATATGACT 59.486 41.667 6.97 2.56 35.91 3.41
3865 4060 5.560375 GCAGCTAGAAATGTGCATATGACTG 60.560 44.000 6.97 0.77 35.91 3.51
3866 4061 4.514441 AGCTAGAAATGTGCATATGACTGC 59.486 41.667 6.97 6.59 42.62 4.40
3902 4097 6.762702 ATCACAAATGACATATGACTGCAA 57.237 33.333 10.38 0.00 37.79 4.08
3979 4179 8.992835 TTAGAGAAAAGTATAGTTTTCGTCCC 57.007 34.615 28.00 20.97 46.65 4.46
3980 4180 7.242322 AGAGAAAAGTATAGTTTTCGTCCCT 57.758 36.000 28.00 22.19 46.65 4.20
3981 4181 7.321908 AGAGAAAAGTATAGTTTTCGTCCCTC 58.678 38.462 28.00 22.10 46.65 4.30
3982 4182 7.001099 AGAAAAGTATAGTTTTCGTCCCTCA 57.999 36.000 28.00 0.00 46.65 3.86
3983 4183 7.447594 AGAAAAGTATAGTTTTCGTCCCTCAA 58.552 34.615 28.00 0.00 46.65 3.02
3984 4184 8.101419 AGAAAAGTATAGTTTTCGTCCCTCAAT 58.899 33.333 28.00 13.18 46.65 2.57
3985 4185 8.631480 AAAAGTATAGTTTTCGTCCCTCAATT 57.369 30.769 11.73 0.00 0.00 2.32
3986 4186 7.845066 AAGTATAGTTTTCGTCCCTCAATTC 57.155 36.000 0.00 0.00 0.00 2.17
3987 4187 7.184067 AGTATAGTTTTCGTCCCTCAATTCT 57.816 36.000 0.00 0.00 0.00 2.40
3988 4188 7.621796 AGTATAGTTTTCGTCCCTCAATTCTT 58.378 34.615 0.00 0.00 0.00 2.52
3989 4189 6.743575 ATAGTTTTCGTCCCTCAATTCTTG 57.256 37.500 0.00 0.00 0.00 3.02
3990 4190 3.821033 AGTTTTCGTCCCTCAATTCTTGG 59.179 43.478 0.00 0.00 0.00 3.61
3991 4191 1.821216 TTCGTCCCTCAATTCTTGGC 58.179 50.000 0.00 0.00 0.00 4.52
3992 4192 0.391130 TCGTCCCTCAATTCTTGGCG 60.391 55.000 0.00 0.00 0.00 5.69
3993 4193 1.369091 CGTCCCTCAATTCTTGGCGG 61.369 60.000 0.00 0.00 0.00 6.13
3994 4194 0.035439 GTCCCTCAATTCTTGGCGGA 60.035 55.000 0.00 0.00 0.00 5.54
3995 4195 0.253044 TCCCTCAATTCTTGGCGGAG 59.747 55.000 0.00 0.00 0.00 4.63
3996 4196 0.035056 CCCTCAATTCTTGGCGGAGT 60.035 55.000 0.00 0.00 0.00 3.85
3997 4197 1.373570 CCTCAATTCTTGGCGGAGTC 58.626 55.000 0.00 0.00 0.00 3.36
3998 4198 1.065854 CCTCAATTCTTGGCGGAGTCT 60.066 52.381 0.00 0.00 0.00 3.24
3999 4199 2.168521 CCTCAATTCTTGGCGGAGTCTA 59.831 50.000 0.00 0.00 0.00 2.59
4000 4200 3.452474 CTCAATTCTTGGCGGAGTCTAG 58.548 50.000 0.00 0.00 36.06 2.43
4001 4201 3.096852 TCAATTCTTGGCGGAGTCTAGA 58.903 45.455 0.00 0.00 42.97 2.43
4002 4202 3.706594 TCAATTCTTGGCGGAGTCTAGAT 59.293 43.478 0.00 0.00 44.19 1.98
4003 4203 4.162320 TCAATTCTTGGCGGAGTCTAGATT 59.838 41.667 0.00 0.00 44.19 2.40
4004 4204 4.762289 ATTCTTGGCGGAGTCTAGATTT 57.238 40.909 0.00 0.00 44.19 2.17
4005 4205 3.526931 TCTTGGCGGAGTCTAGATTTG 57.473 47.619 0.00 0.00 39.34 2.32
4006 4206 2.168521 TCTTGGCGGAGTCTAGATTTGG 59.831 50.000 0.00 0.00 39.34 3.28
4007 4207 1.568504 TGGCGGAGTCTAGATTTGGT 58.431 50.000 0.00 0.00 0.00 3.67
4008 4208 1.480954 TGGCGGAGTCTAGATTTGGTC 59.519 52.381 0.00 0.00 0.00 4.02
4009 4209 1.202545 GGCGGAGTCTAGATTTGGTCC 60.203 57.143 0.00 0.00 0.00 4.46
4010 4210 1.202545 GCGGAGTCTAGATTTGGTCCC 60.203 57.143 0.00 0.00 0.00 4.46
4011 4211 2.389715 CGGAGTCTAGATTTGGTCCCT 58.610 52.381 0.00 0.00 0.00 4.20
4012 4212 2.362717 CGGAGTCTAGATTTGGTCCCTC 59.637 54.545 0.00 0.00 0.00 4.30
4013 4213 3.375699 GGAGTCTAGATTTGGTCCCTCA 58.624 50.000 0.00 0.00 0.00 3.86
4014 4214 3.775316 GGAGTCTAGATTTGGTCCCTCAA 59.225 47.826 0.00 0.00 0.00 3.02
4015 4215 4.383226 GGAGTCTAGATTTGGTCCCTCAAC 60.383 50.000 0.00 0.00 0.00 3.18
4016 4216 4.430441 AGTCTAGATTTGGTCCCTCAACT 58.570 43.478 0.00 0.00 0.00 3.16
4017 4217 4.468153 AGTCTAGATTTGGTCCCTCAACTC 59.532 45.833 0.00 0.00 0.00 3.01
4018 4218 3.775316 TCTAGATTTGGTCCCTCAACTCC 59.225 47.826 0.00 0.00 29.87 3.85
4019 4219 2.348472 AGATTTGGTCCCTCAACTCCA 58.652 47.619 0.00 0.00 29.87 3.86
4020 4220 2.716424 AGATTTGGTCCCTCAACTCCAA 59.284 45.455 0.00 0.00 38.04 3.53
4022 4222 3.390175 TTTGGTCCCTCAACTCCAAAA 57.610 42.857 5.86 0.00 43.80 2.44
4023 4223 2.358322 TGGTCCCTCAACTCCAAAAC 57.642 50.000 0.00 0.00 0.00 2.43
4024 4224 1.133606 TGGTCCCTCAACTCCAAAACC 60.134 52.381 0.00 0.00 0.00 3.27
4025 4225 1.235724 GTCCCTCAACTCCAAAACCG 58.764 55.000 0.00 0.00 0.00 4.44
4026 4226 0.109723 TCCCTCAACTCCAAAACCGG 59.890 55.000 0.00 0.00 0.00 5.28
4027 4227 0.109723 CCCTCAACTCCAAAACCGGA 59.890 55.000 9.46 0.00 0.00 5.14
4028 4228 1.235724 CCTCAACTCCAAAACCGGAC 58.764 55.000 9.46 0.00 0.00 4.79
4029 4229 1.476110 CCTCAACTCCAAAACCGGACA 60.476 52.381 9.46 0.00 0.00 4.02
4030 4230 2.294074 CTCAACTCCAAAACCGGACAA 58.706 47.619 9.46 0.00 0.00 3.18
4031 4231 2.018515 TCAACTCCAAAACCGGACAAC 58.981 47.619 9.46 0.00 0.00 3.32
4032 4232 2.021457 CAACTCCAAAACCGGACAACT 58.979 47.619 9.46 0.00 0.00 3.16
4033 4233 2.425668 CAACTCCAAAACCGGACAACTT 59.574 45.455 9.46 0.00 0.00 2.66
4034 4234 2.021457 ACTCCAAAACCGGACAACTTG 58.979 47.619 9.46 3.60 0.00 3.16
4035 4235 0.741915 TCCAAAACCGGACAACTTGC 59.258 50.000 9.46 0.00 0.00 4.01
4036 4236 0.457851 CCAAAACCGGACAACTTGCA 59.542 50.000 9.46 0.00 0.00 4.08
4037 4237 1.555477 CAAAACCGGACAACTTGCAC 58.445 50.000 9.46 0.00 0.00 4.57
4038 4238 0.458260 AAAACCGGACAACTTGCACC 59.542 50.000 9.46 0.00 0.00 5.01
4039 4239 1.388837 AAACCGGACAACTTGCACCC 61.389 55.000 9.46 0.00 0.00 4.61
4040 4240 2.113139 CCGGACAACTTGCACCCT 59.887 61.111 0.00 0.00 0.00 4.34
4041 4241 1.528309 CCGGACAACTTGCACCCTT 60.528 57.895 0.00 0.00 0.00 3.95
4042 4242 0.250553 CCGGACAACTTGCACCCTTA 60.251 55.000 0.00 0.00 0.00 2.69
4043 4243 1.600023 CGGACAACTTGCACCCTTAA 58.400 50.000 0.00 0.00 0.00 1.85
4044 4244 1.265905 CGGACAACTTGCACCCTTAAC 59.734 52.381 0.00 0.00 0.00 2.01
4045 4245 2.583143 GGACAACTTGCACCCTTAACT 58.417 47.619 0.00 0.00 0.00 2.24
4046 4246 2.956333 GGACAACTTGCACCCTTAACTT 59.044 45.455 0.00 0.00 0.00 2.66
4047 4247 3.383505 GGACAACTTGCACCCTTAACTTT 59.616 43.478 0.00 0.00 0.00 2.66
4048 4248 4.142026 GGACAACTTGCACCCTTAACTTTT 60.142 41.667 0.00 0.00 0.00 2.27
4049 4249 5.006153 ACAACTTGCACCCTTAACTTTTC 57.994 39.130 0.00 0.00 0.00 2.29
4050 4250 4.464597 ACAACTTGCACCCTTAACTTTTCA 59.535 37.500 0.00 0.00 0.00 2.69
4051 4251 5.046950 ACAACTTGCACCCTTAACTTTTCAA 60.047 36.000 0.00 0.00 0.00 2.69
4052 4252 5.669164 ACTTGCACCCTTAACTTTTCAAA 57.331 34.783 0.00 0.00 0.00 2.69
4053 4253 5.416083 ACTTGCACCCTTAACTTTTCAAAC 58.584 37.500 0.00 0.00 0.00 2.93
4054 4254 4.394439 TGCACCCTTAACTTTTCAAACC 57.606 40.909 0.00 0.00 0.00 3.27
4055 4255 3.181485 TGCACCCTTAACTTTTCAAACCG 60.181 43.478 0.00 0.00 0.00 4.44
4056 4256 3.797524 GCACCCTTAACTTTTCAAACCGG 60.798 47.826 0.00 0.00 0.00 5.28
4057 4257 3.633065 CACCCTTAACTTTTCAAACCGGA 59.367 43.478 9.46 0.00 0.00 5.14
4058 4258 3.633525 ACCCTTAACTTTTCAAACCGGAC 59.366 43.478 9.46 0.00 0.00 4.79
4059 4259 3.633065 CCCTTAACTTTTCAAACCGGACA 59.367 43.478 9.46 0.00 0.00 4.02
4060 4260 4.098196 CCCTTAACTTTTCAAACCGGACAA 59.902 41.667 9.46 0.00 0.00 3.18
4061 4261 5.278604 CCTTAACTTTTCAAACCGGACAAG 58.721 41.667 9.46 2.99 32.26 3.16
4062 4262 5.066764 CCTTAACTTTTCAAACCGGACAAGA 59.933 40.000 9.46 0.00 30.90 3.02
4063 4263 6.238925 CCTTAACTTTTCAAACCGGACAAGAT 60.239 38.462 9.46 0.00 30.90 2.40
4064 4264 5.592104 AACTTTTCAAACCGGACAAGATT 57.408 34.783 9.46 0.00 30.90 2.40
4065 4265 5.183014 ACTTTTCAAACCGGACAAGATTC 57.817 39.130 9.46 0.00 30.90 2.52
4066 4266 4.642885 ACTTTTCAAACCGGACAAGATTCA 59.357 37.500 9.46 0.00 30.90 2.57
4067 4267 5.301805 ACTTTTCAAACCGGACAAGATTCAT 59.698 36.000 9.46 0.00 30.90 2.57
4068 4268 5.782893 TTTCAAACCGGACAAGATTCATT 57.217 34.783 9.46 0.00 0.00 2.57
4069 4269 5.371115 TTCAAACCGGACAAGATTCATTC 57.629 39.130 9.46 0.00 0.00 2.67
4070 4270 3.756434 TCAAACCGGACAAGATTCATTCC 59.244 43.478 9.46 0.00 0.00 3.01
4071 4271 3.721087 AACCGGACAAGATTCATTCCT 57.279 42.857 9.46 0.00 0.00 3.36
4072 4272 2.991250 ACCGGACAAGATTCATTCCTG 58.009 47.619 9.46 0.00 0.00 3.86
4073 4273 2.292267 CCGGACAAGATTCATTCCTGG 58.708 52.381 0.00 0.00 0.00 4.45
4074 4274 2.356125 CCGGACAAGATTCATTCCTGGT 60.356 50.000 0.00 0.00 0.00 4.00
4075 4275 2.939103 CGGACAAGATTCATTCCTGGTC 59.061 50.000 0.00 0.00 0.00 4.02
4076 4276 3.619733 CGGACAAGATTCATTCCTGGTCA 60.620 47.826 0.00 0.00 0.00 4.02
4077 4277 3.691609 GGACAAGATTCATTCCTGGTCAC 59.308 47.826 0.00 0.00 0.00 3.67
4078 4278 3.338249 ACAAGATTCATTCCTGGTCACG 58.662 45.455 0.00 0.00 0.00 4.35
4079 4279 2.679837 CAAGATTCATTCCTGGTCACGG 59.320 50.000 0.00 0.00 0.00 4.94
4080 4280 1.909302 AGATTCATTCCTGGTCACGGT 59.091 47.619 0.00 0.00 0.00 4.83
4081 4281 2.305927 AGATTCATTCCTGGTCACGGTT 59.694 45.455 0.00 0.00 0.00 4.44
4082 4282 2.649531 TTCATTCCTGGTCACGGTTT 57.350 45.000 0.00 0.00 0.00 3.27
4083 4283 2.649531 TCATTCCTGGTCACGGTTTT 57.350 45.000 0.00 0.00 0.00 2.43
4084 4284 2.226330 TCATTCCTGGTCACGGTTTTG 58.774 47.619 0.00 0.00 0.00 2.44
4085 4285 2.158740 TCATTCCTGGTCACGGTTTTGA 60.159 45.455 0.00 0.00 0.00 2.69
4086 4286 1.670791 TTCCTGGTCACGGTTTTGAC 58.329 50.000 0.00 0.00 44.53 3.18
4097 4297 1.929230 GGTTTTGACCGGTTTTGGTG 58.071 50.000 9.42 0.00 44.01 4.17
4098 4298 1.282817 GTTTTGACCGGTTTTGGTGC 58.717 50.000 9.42 0.00 44.01 5.01
4099 4299 0.175989 TTTTGACCGGTTTTGGTGCC 59.824 50.000 9.42 0.00 44.01 5.01
4100 4300 1.677637 TTTGACCGGTTTTGGTGCCC 61.678 55.000 9.42 0.00 44.01 5.36
4101 4301 3.299977 GACCGGTTTTGGTGCCCC 61.300 66.667 9.42 0.00 44.01 5.80
4102 4302 4.144727 ACCGGTTTTGGTGCCCCA 62.145 61.111 0.00 0.00 41.85 4.96
4103 4303 3.302344 CCGGTTTTGGTGCCCCAG 61.302 66.667 0.00 0.00 43.15 4.45
4104 4304 2.520741 CGGTTTTGGTGCCCCAGT 60.521 61.111 0.00 0.00 43.15 4.00
4105 4305 2.131067 CGGTTTTGGTGCCCCAGTT 61.131 57.895 0.00 0.00 43.15 3.16
4106 4306 1.681486 CGGTTTTGGTGCCCCAGTTT 61.681 55.000 0.00 0.00 43.15 2.66
4107 4307 0.544223 GGTTTTGGTGCCCCAGTTTT 59.456 50.000 0.00 0.00 43.15 2.43
4108 4308 1.662517 GTTTTGGTGCCCCAGTTTTG 58.337 50.000 0.00 0.00 43.15 2.44
4109 4309 1.208293 GTTTTGGTGCCCCAGTTTTGA 59.792 47.619 0.00 0.00 43.15 2.69
4110 4310 0.827368 TTTGGTGCCCCAGTTTTGAC 59.173 50.000 0.00 0.00 43.15 3.18
4111 4311 1.045911 TTGGTGCCCCAGTTTTGACC 61.046 55.000 0.00 0.00 43.15 4.02
4112 4312 2.561037 GGTGCCCCAGTTTTGACCG 61.561 63.158 0.00 0.00 0.00 4.79
4113 4313 1.826487 GTGCCCCAGTTTTGACCGT 60.826 57.895 0.00 0.00 0.00 4.83
4114 4314 1.076632 TGCCCCAGTTTTGACCGTT 60.077 52.632 0.00 0.00 0.00 4.44
4115 4315 1.104577 TGCCCCAGTTTTGACCGTTC 61.105 55.000 0.00 0.00 0.00 3.95
4116 4316 1.802337 GCCCCAGTTTTGACCGTTCC 61.802 60.000 0.00 0.00 0.00 3.62
4117 4317 1.512156 CCCCAGTTTTGACCGTTCCG 61.512 60.000 0.00 0.00 0.00 4.30
4118 4318 0.533308 CCCAGTTTTGACCGTTCCGA 60.533 55.000 0.00 0.00 0.00 4.55
4119 4319 0.584876 CCAGTTTTGACCGTTCCGAC 59.415 55.000 0.00 0.00 0.00 4.79
4120 4320 1.578583 CAGTTTTGACCGTTCCGACT 58.421 50.000 0.00 0.00 0.00 4.18
4121 4321 1.525619 CAGTTTTGACCGTTCCGACTC 59.474 52.381 0.00 0.00 0.00 3.36
4122 4322 1.137479 AGTTTTGACCGTTCCGACTCA 59.863 47.619 0.00 0.00 0.00 3.41
4123 4323 1.935199 GTTTTGACCGTTCCGACTCAA 59.065 47.619 0.00 0.00 0.00 3.02
4124 4324 2.312722 TTTGACCGTTCCGACTCAAA 57.687 45.000 0.00 5.76 33.96 2.69
4125 4325 2.536761 TTGACCGTTCCGACTCAAAT 57.463 45.000 0.00 0.00 0.00 2.32
4126 4326 2.536761 TGACCGTTCCGACTCAAATT 57.463 45.000 0.00 0.00 0.00 1.82
4127 4327 2.841215 TGACCGTTCCGACTCAAATTT 58.159 42.857 0.00 0.00 0.00 1.82
4128 4328 2.546368 TGACCGTTCCGACTCAAATTTG 59.454 45.455 12.15 12.15 0.00 2.32
4129 4329 1.265905 ACCGTTCCGACTCAAATTTGC 59.734 47.619 13.54 0.00 0.00 3.68
4130 4330 1.535462 CCGTTCCGACTCAAATTTGCT 59.465 47.619 13.54 0.58 0.00 3.91
4131 4331 2.031157 CCGTTCCGACTCAAATTTGCTT 60.031 45.455 13.54 2.20 0.00 3.91
4132 4332 3.187637 CCGTTCCGACTCAAATTTGCTTA 59.812 43.478 13.54 0.00 0.00 3.09
4133 4333 4.148891 CGTTCCGACTCAAATTTGCTTAC 58.851 43.478 13.54 4.28 0.00 2.34
4134 4334 4.473199 GTTCCGACTCAAATTTGCTTACC 58.527 43.478 13.54 0.49 0.00 2.85
4135 4335 4.015872 TCCGACTCAAATTTGCTTACCT 57.984 40.909 13.54 0.00 0.00 3.08
4136 4336 4.394729 TCCGACTCAAATTTGCTTACCTT 58.605 39.130 13.54 0.00 0.00 3.50
4137 4337 4.825085 TCCGACTCAAATTTGCTTACCTTT 59.175 37.500 13.54 0.00 0.00 3.11
4138 4338 5.300792 TCCGACTCAAATTTGCTTACCTTTT 59.699 36.000 13.54 0.00 0.00 2.27
4139 4339 5.629435 CCGACTCAAATTTGCTTACCTTTTC 59.371 40.000 13.54 0.00 0.00 2.29
4140 4340 5.629435 CGACTCAAATTTGCTTACCTTTTCC 59.371 40.000 13.54 0.00 0.00 3.13
4141 4341 6.478512 ACTCAAATTTGCTTACCTTTTCCA 57.521 33.333 13.54 0.00 0.00 3.53
4142 4342 6.883744 ACTCAAATTTGCTTACCTTTTCCAA 58.116 32.000 13.54 0.00 0.00 3.53
4143 4343 6.986231 ACTCAAATTTGCTTACCTTTTCCAAG 59.014 34.615 13.54 3.14 0.00 3.61
4144 4344 6.883744 TCAAATTTGCTTACCTTTTCCAAGT 58.116 32.000 13.54 0.00 0.00 3.16
4145 4345 6.983890 TCAAATTTGCTTACCTTTTCCAAGTC 59.016 34.615 13.54 0.00 0.00 3.01
4146 4346 4.929819 TTTGCTTACCTTTTCCAAGTCC 57.070 40.909 0.00 0.00 0.00 3.85
4147 4347 3.586470 TGCTTACCTTTTCCAAGTCCA 57.414 42.857 0.00 0.00 0.00 4.02
4148 4348 3.219281 TGCTTACCTTTTCCAAGTCCAC 58.781 45.455 0.00 0.00 0.00 4.02
4149 4349 2.225727 GCTTACCTTTTCCAAGTCCACG 59.774 50.000 0.00 0.00 0.00 4.94
4150 4350 3.473625 CTTACCTTTTCCAAGTCCACGT 58.526 45.455 0.00 0.00 0.00 4.49
4151 4351 4.634199 CTTACCTTTTCCAAGTCCACGTA 58.366 43.478 0.00 0.00 0.00 3.57
4152 4352 2.842457 ACCTTTTCCAAGTCCACGTAC 58.158 47.619 0.00 0.00 0.00 3.67
4153 4353 2.436911 ACCTTTTCCAAGTCCACGTACT 59.563 45.455 0.00 0.00 0.00 2.73
4154 4354 3.642848 ACCTTTTCCAAGTCCACGTACTA 59.357 43.478 0.00 0.00 0.00 1.82
4155 4355 4.285260 ACCTTTTCCAAGTCCACGTACTAT 59.715 41.667 0.00 0.00 0.00 2.12
4156 4356 5.221783 ACCTTTTCCAAGTCCACGTACTATT 60.222 40.000 0.00 0.00 0.00 1.73
4157 4357 5.704053 CCTTTTCCAAGTCCACGTACTATTT 59.296 40.000 0.00 0.00 0.00 1.40
4158 4358 6.206048 CCTTTTCCAAGTCCACGTACTATTTT 59.794 38.462 0.00 0.00 0.00 1.82
4159 4359 6.790285 TTTCCAAGTCCACGTACTATTTTC 57.210 37.500 0.00 0.00 0.00 2.29
4160 4360 5.471556 TCCAAGTCCACGTACTATTTTCA 57.528 39.130 0.00 0.00 0.00 2.69
4161 4361 5.856156 TCCAAGTCCACGTACTATTTTCAA 58.144 37.500 0.00 0.00 0.00 2.69
4162 4362 6.289834 TCCAAGTCCACGTACTATTTTCAAA 58.710 36.000 0.00 0.00 0.00 2.69
4163 4363 6.938030 TCCAAGTCCACGTACTATTTTCAAAT 59.062 34.615 0.00 0.00 0.00 2.32
4164 4364 7.446013 TCCAAGTCCACGTACTATTTTCAAATT 59.554 33.333 0.00 0.00 0.00 1.82
4165 4365 7.749126 CCAAGTCCACGTACTATTTTCAAATTC 59.251 37.037 0.00 0.00 0.00 2.17
4166 4366 7.057149 AGTCCACGTACTATTTTCAAATTCG 57.943 36.000 0.00 0.00 0.00 3.34
4167 4367 6.091713 AGTCCACGTACTATTTTCAAATTCGG 59.908 38.462 0.00 0.00 0.00 4.30
4168 4368 5.933463 TCCACGTACTATTTTCAAATTCGGT 59.067 36.000 0.00 0.00 0.00 4.69
4169 4369 6.427547 TCCACGTACTATTTTCAAATTCGGTT 59.572 34.615 0.00 0.00 0.00 4.44
4170 4370 7.601886 TCCACGTACTATTTTCAAATTCGGTTA 59.398 33.333 0.00 0.00 0.00 2.85
4171 4371 7.689400 CCACGTACTATTTTCAAATTCGGTTAC 59.311 37.037 0.00 0.00 0.00 2.50
4172 4372 8.437742 CACGTACTATTTTCAAATTCGGTTACT 58.562 33.333 0.00 0.00 0.00 2.24
4173 4373 8.992073 ACGTACTATTTTCAAATTCGGTTACTT 58.008 29.630 0.00 0.00 0.00 2.24
4174 4374 9.815936 CGTACTATTTTCAAATTCGGTTACTTT 57.184 29.630 0.00 0.00 0.00 2.66
4205 4405 9.923786 AAATACGTGAACCTTTTTAAATTTTGC 57.076 25.926 0.00 0.00 0.00 3.68
4206 4406 6.026873 ACGTGAACCTTTTTAAATTTTGCG 57.973 33.333 0.00 0.00 0.00 4.85
4207 4407 5.577554 ACGTGAACCTTTTTAAATTTTGCGT 59.422 32.000 0.00 0.00 0.00 5.24
4208 4408 6.750963 ACGTGAACCTTTTTAAATTTTGCGTA 59.249 30.769 0.00 0.00 0.00 4.42
4209 4409 7.052602 CGTGAACCTTTTTAAATTTTGCGTAC 58.947 34.615 0.00 0.00 0.00 3.67
4210 4410 7.339207 GTGAACCTTTTTAAATTTTGCGTACC 58.661 34.615 0.00 0.00 0.00 3.34
4211 4411 7.223193 GTGAACCTTTTTAAATTTTGCGTACCT 59.777 33.333 0.00 0.00 0.00 3.08
4212 4412 7.764901 TGAACCTTTTTAAATTTTGCGTACCTT 59.235 29.630 0.00 0.00 0.00 3.50
4213 4413 8.495361 AACCTTTTTAAATTTTGCGTACCTTT 57.505 26.923 0.00 0.00 0.00 3.11
4214 4414 8.495361 ACCTTTTTAAATTTTGCGTACCTTTT 57.505 26.923 0.00 0.00 0.00 2.27
4215 4415 8.948145 ACCTTTTTAAATTTTGCGTACCTTTTT 58.052 25.926 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.431887 GAGAAATGATACTACAACCAAGTGTTA 57.568 33.333 0.00 0.00 34.69 2.41
17 18 7.016153 TGGAGAAATGATACTACAACCAAGT 57.984 36.000 0.00 0.00 0.00 3.16
20 21 7.252612 TCTTGGAGAAATGATACTACAACCA 57.747 36.000 0.00 0.00 33.97 3.67
21 22 7.442666 GGATCTTGGAGAAATGATACTACAACC 59.557 40.741 0.00 0.00 33.97 3.77
22 23 8.207545 AGGATCTTGGAGAAATGATACTACAAC 58.792 37.037 0.00 0.00 33.97 3.32
23 24 8.324191 AGGATCTTGGAGAAATGATACTACAA 57.676 34.615 0.00 0.00 35.90 2.41
24 25 7.015682 GGAGGATCTTGGAGAAATGATACTACA 59.984 40.741 0.00 0.00 32.37 2.74
38 39 1.694169 GGCCTGGGAGGATCTTGGA 60.694 63.158 0.00 0.00 37.67 3.53
119 120 0.249489 CGACCATGATCGACCTTCCC 60.249 60.000 2.28 0.00 45.13 3.97
154 155 3.098555 CGTAGATGGCGGCAAACC 58.901 61.111 18.31 8.58 0.00 3.27
206 209 1.461127 ACATGAAACTTCTTCTCGCGC 59.539 47.619 0.00 0.00 0.00 6.86
221 224 0.795698 CGCGTTGATGTTGGACATGA 59.204 50.000 0.00 0.00 39.27 3.07
284 312 2.363018 TCTCTCCTCTGGTGGCGG 60.363 66.667 0.00 0.00 0.00 6.13
385 420 1.663695 CCAACGCCCGATATTTCACT 58.336 50.000 0.00 0.00 0.00 3.41
388 423 1.278637 CGCCAACGCCCGATATTTC 59.721 57.895 0.00 0.00 0.00 2.17
389 424 1.027792 AACGCCAACGCCCGATATTT 61.028 50.000 0.00 0.00 45.53 1.40
390 425 1.450669 AACGCCAACGCCCGATATT 60.451 52.632 0.00 0.00 45.53 1.28
391 426 2.177580 CAACGCCAACGCCCGATAT 61.178 57.895 0.00 0.00 45.53 1.63
392 427 2.816083 CAACGCCAACGCCCGATA 60.816 61.111 0.00 0.00 45.53 2.92
396 431 3.418744 AAACACAACGCCAACGCCC 62.419 57.895 0.00 0.00 45.53 6.13
397 432 2.103340 AAACACAACGCCAACGCC 59.897 55.556 0.00 0.00 45.53 5.68
398 433 2.227568 CCAAACACAACGCCAACGC 61.228 57.895 0.00 0.00 45.53 4.84
400 435 0.108567 AACCCAAACACAACGCCAAC 60.109 50.000 0.00 0.00 0.00 3.77
401 436 0.108615 CAACCCAAACACAACGCCAA 60.109 50.000 0.00 0.00 0.00 4.52
402 437 1.513158 CAACCCAAACACAACGCCA 59.487 52.632 0.00 0.00 0.00 5.69
403 438 1.227118 CCAACCCAAACACAACGCC 60.227 57.895 0.00 0.00 0.00 5.68
404 439 1.227118 CCCAACCCAAACACAACGC 60.227 57.895 0.00 0.00 0.00 4.84
482 517 3.039202 GAGGGCGACGCAAACCATG 62.039 63.158 23.09 0.00 0.00 3.66
483 518 2.746277 GAGGGCGACGCAAACCAT 60.746 61.111 23.09 0.68 0.00 3.55
484 519 3.876589 GAGAGGGCGACGCAAACCA 62.877 63.158 23.09 0.00 0.00 3.67
485 520 3.119096 GAGAGGGCGACGCAAACC 61.119 66.667 23.09 13.82 0.00 3.27
486 521 2.048127 AGAGAGGGCGACGCAAAC 60.048 61.111 23.09 11.15 0.00 2.93
487 522 1.888436 ATGAGAGAGGGCGACGCAAA 61.888 55.000 23.09 0.00 0.00 3.68
494 529 1.756408 ATGCTGGATGAGAGAGGGCG 61.756 60.000 0.00 0.00 0.00 6.13
501 536 0.757512 GCTCTGGATGCTGGATGAGA 59.242 55.000 0.00 0.00 0.00 3.27
502 537 0.468648 TGCTCTGGATGCTGGATGAG 59.531 55.000 0.00 0.00 0.00 2.90
503 538 1.137697 ATGCTCTGGATGCTGGATGA 58.862 50.000 0.00 0.00 0.00 2.92
509 544 3.881688 GTGTGAAATATGCTCTGGATGCT 59.118 43.478 0.00 0.00 0.00 3.79
510 545 3.303593 CGTGTGAAATATGCTCTGGATGC 60.304 47.826 0.00 0.00 0.00 3.91
511 546 3.249320 CCGTGTGAAATATGCTCTGGATG 59.751 47.826 0.00 0.00 0.00 3.51
512 547 3.470709 CCGTGTGAAATATGCTCTGGAT 58.529 45.455 0.00 0.00 0.00 3.41
513 548 2.905075 CCGTGTGAAATATGCTCTGGA 58.095 47.619 0.00 0.00 0.00 3.86
514 549 1.331756 GCCGTGTGAAATATGCTCTGG 59.668 52.381 0.00 0.00 0.00 3.86
515 550 1.331756 GGCCGTGTGAAATATGCTCTG 59.668 52.381 0.00 0.00 0.00 3.35
516 551 1.668419 GGCCGTGTGAAATATGCTCT 58.332 50.000 0.00 0.00 0.00 4.09
517 552 0.304705 CGGCCGTGTGAAATATGCTC 59.695 55.000 19.50 0.00 0.00 4.26
567 606 0.448990 GGTCCAACCGGAATAAACGC 59.551 55.000 9.46 0.00 45.20 4.84
795 852 2.683933 GAGACGGCAGGGAAGGGA 60.684 66.667 0.00 0.00 0.00 4.20
797 854 2.726351 GGAGAGACGGCAGGGAAGG 61.726 68.421 0.00 0.00 0.00 3.46
799 856 1.682684 GAGGAGAGACGGCAGGGAA 60.683 63.158 0.00 0.00 0.00 3.97
806 863 1.820481 GACGGGAGAGGAGAGACGG 60.820 68.421 0.00 0.00 0.00 4.79
894 966 1.134699 GGATCACTCGACAATGGCTGA 60.135 52.381 0.00 0.00 0.00 4.26
1215 1287 1.677552 CTGGTGGTAGTGGTGGACC 59.322 63.158 0.00 0.00 36.17 4.46
1329 1401 2.441532 TACTCCTTCTCCGGCGGG 60.442 66.667 27.98 17.02 0.00 6.13
1333 1405 1.401199 GAACGAGTACTCCTTCTCCGG 59.599 57.143 20.81 0.00 0.00 5.14
1542 1626 1.355066 GCGAGTAGTGGCAGTTCTGC 61.355 60.000 15.41 15.41 0.00 4.26
1894 1982 4.873746 TTCCAAGTTCCAACAACAAACA 57.126 36.364 0.00 0.00 0.00 2.83
1895 1983 5.641636 ACATTTCCAAGTTCCAACAACAAAC 59.358 36.000 0.00 0.00 0.00 2.93
1896 1984 5.799213 ACATTTCCAAGTTCCAACAACAAA 58.201 33.333 0.00 0.00 0.00 2.83
1897 1985 5.413309 ACATTTCCAAGTTCCAACAACAA 57.587 34.783 0.00 0.00 0.00 2.83
2107 2196 3.440522 CCTAGCACATCGATCGATAGGAA 59.559 47.826 28.45 15.14 30.71 3.36
2122 2227 2.213499 ACGCATAAGCATTCCTAGCAC 58.787 47.619 0.00 0.00 42.27 4.40
2152 2260 4.481112 CTGCCCGCCGCACAAATC 62.481 66.667 0.00 0.00 44.64 2.17
2254 2367 1.811266 CATGAGAAGGGCCGTCACG 60.811 63.158 21.59 3.81 0.00 4.35
2317 2430 3.418684 TTGGTTTTCTCTCTGTAGGCC 57.581 47.619 0.00 0.00 0.00 5.19
2363 2488 5.700846 AGTTACAGTCGAGTATGAACAGTG 58.299 41.667 11.50 0.00 0.00 3.66
2373 2498 7.201803 GGATGGAGTAATAAGTTACAGTCGAGT 60.202 40.741 0.00 0.00 42.13 4.18
2376 2501 7.040473 AGGATGGAGTAATAAGTTACAGTCG 57.960 40.000 1.71 0.00 42.13 4.18
2431 2556 9.745880 GTAGTACTAATTGCTGCTGATTTAGTA 57.254 33.333 3.61 9.86 0.00 1.82
2432 2557 8.478877 AGTAGTACTAATTGCTGCTGATTTAGT 58.521 33.333 3.61 15.67 0.00 2.24
2433 2558 8.879342 AGTAGTACTAATTGCTGCTGATTTAG 57.121 34.615 3.61 5.72 0.00 1.85
2435 2560 9.099454 GTTAGTAGTACTAATTGCTGCTGATTT 57.901 33.333 22.45 0.00 42.06 2.17
2436 2561 8.478877 AGTTAGTAGTACTAATTGCTGCTGATT 58.521 33.333 22.45 4.26 42.06 2.57
2437 2562 8.012957 AGTTAGTAGTACTAATTGCTGCTGAT 57.987 34.615 22.45 0.00 42.06 2.90
2438 2563 7.406031 AGTTAGTAGTACTAATTGCTGCTGA 57.594 36.000 22.45 0.00 42.06 4.26
2439 2564 7.976734 AGAAGTTAGTAGTACTAATTGCTGCTG 59.023 37.037 22.45 0.00 42.06 4.41
2440 2565 7.976734 CAGAAGTTAGTAGTACTAATTGCTGCT 59.023 37.037 27.76 19.89 42.96 4.24
2441 2566 8.121167 CAGAAGTTAGTAGTACTAATTGCTGC 57.879 38.462 27.76 18.50 42.96 5.25
2443 2568 8.068892 AGCAGAAGTTAGTAGTACTAATTGCT 57.931 34.615 27.21 27.21 42.06 3.91
2444 2569 9.235537 GTAGCAGAAGTTAGTAGTACTAATTGC 57.764 37.037 22.45 24.16 42.06 3.56
2445 2570 9.435802 CGTAGCAGAAGTTAGTAGTACTAATTG 57.564 37.037 22.45 18.21 42.06 2.32
2446 2571 9.388506 TCGTAGCAGAAGTTAGTAGTACTAATT 57.611 33.333 22.45 16.88 42.06 1.40
2447 2572 8.954950 TCGTAGCAGAAGTTAGTAGTACTAAT 57.045 34.615 22.45 8.10 42.06 1.73
2448 2573 8.954950 ATCGTAGCAGAAGTTAGTAGTACTAA 57.045 34.615 17.12 17.12 38.28 2.24
2449 2574 9.469807 GTATCGTAGCAGAAGTTAGTAGTACTA 57.530 37.037 5.90 5.90 0.00 1.82
2450 2575 7.984050 TGTATCGTAGCAGAAGTTAGTAGTACT 59.016 37.037 8.14 8.14 0.00 2.73
2451 2576 8.136057 TGTATCGTAGCAGAAGTTAGTAGTAC 57.864 38.462 0.00 0.00 0.00 2.73
2452 2577 8.607459 GTTGTATCGTAGCAGAAGTTAGTAGTA 58.393 37.037 0.00 0.00 0.00 1.82
2453 2578 7.336427 AGTTGTATCGTAGCAGAAGTTAGTAGT 59.664 37.037 0.00 0.00 0.00 2.73
2454 2579 7.695820 AGTTGTATCGTAGCAGAAGTTAGTAG 58.304 38.462 0.00 0.00 0.00 2.57
2455 2580 7.621428 AGTTGTATCGTAGCAGAAGTTAGTA 57.379 36.000 0.00 0.00 0.00 1.82
2456 2581 6.512342 AGTTGTATCGTAGCAGAAGTTAGT 57.488 37.500 0.00 0.00 0.00 2.24
2457 2582 8.182881 ACTAAGTTGTATCGTAGCAGAAGTTAG 58.817 37.037 0.00 0.00 36.04 2.34
2458 2583 8.048534 ACTAAGTTGTATCGTAGCAGAAGTTA 57.951 34.615 0.00 0.00 0.00 2.24
2459 2584 6.921914 ACTAAGTTGTATCGTAGCAGAAGTT 58.078 36.000 0.00 0.00 0.00 2.66
2460 2585 6.512342 ACTAAGTTGTATCGTAGCAGAAGT 57.488 37.500 0.00 0.00 0.00 3.01
2461 2586 9.517609 AATTACTAAGTTGTATCGTAGCAGAAG 57.482 33.333 0.00 0.00 0.00 2.85
2462 2587 9.512435 GAATTACTAAGTTGTATCGTAGCAGAA 57.488 33.333 0.00 0.00 0.00 3.02
2463 2588 8.680001 TGAATTACTAAGTTGTATCGTAGCAGA 58.320 33.333 0.00 0.00 0.00 4.26
2464 2589 8.851960 TGAATTACTAAGTTGTATCGTAGCAG 57.148 34.615 0.00 0.00 0.00 4.24
2465 2590 9.244799 CATGAATTACTAAGTTGTATCGTAGCA 57.755 33.333 0.00 0.00 0.00 3.49
2466 2591 9.245962 ACATGAATTACTAAGTTGTATCGTAGC 57.754 33.333 0.00 0.00 0.00 3.58
2468 2593 9.027129 GCACATGAATTACTAAGTTGTATCGTA 57.973 33.333 0.00 0.00 0.00 3.43
2469 2594 7.253983 CGCACATGAATTACTAAGTTGTATCGT 60.254 37.037 0.00 0.00 0.00 3.73
2470 2595 7.057402 CGCACATGAATTACTAAGTTGTATCG 58.943 38.462 0.00 0.00 0.00 2.92
2471 2596 6.846283 GCGCACATGAATTACTAAGTTGTATC 59.154 38.462 0.30 0.00 0.00 2.24
2588 2733 6.292923 ACTGCATTGTTGTTTGTAGGTACTA 58.707 36.000 0.00 0.00 41.75 1.82
2589 2734 5.130350 ACTGCATTGTTGTTTGTAGGTACT 58.870 37.500 0.00 0.00 46.37 2.73
2590 2735 5.432885 ACTGCATTGTTGTTTGTAGGTAC 57.567 39.130 0.00 0.00 30.82 3.34
2591 2736 6.095580 TGAAACTGCATTGTTGTTTGTAGGTA 59.904 34.615 5.81 0.00 34.55 3.08
2592 2737 5.105554 TGAAACTGCATTGTTGTTTGTAGGT 60.106 36.000 5.81 0.00 34.55 3.08
2593 2738 5.347342 TGAAACTGCATTGTTGTTTGTAGG 58.653 37.500 5.81 0.00 34.55 3.18
2654 2802 3.519107 TGCTCCCACAGATTAGTTCATCA 59.481 43.478 0.00 0.00 0.00 3.07
2772 2920 2.125512 CACTGCGGCTCTACCACC 60.126 66.667 0.00 0.00 39.03 4.61
2823 2971 3.565214 TGGGAGTTGAAGGGCGCA 61.565 61.111 10.83 0.00 0.00 6.09
2844 2992 1.553690 CGGATTGGGACTGGGACTGT 61.554 60.000 0.00 0.00 45.09 3.55
2853 3001 2.511600 CGACCTGCGGATTGGGAC 60.512 66.667 0.00 0.00 36.03 4.46
2921 3085 4.836825 ACCTGAAGACGAAACATGATCAT 58.163 39.130 1.18 1.18 0.00 2.45
2922 3086 4.271696 ACCTGAAGACGAAACATGATCA 57.728 40.909 0.00 0.00 0.00 2.92
2923 3087 4.093556 GGAACCTGAAGACGAAACATGATC 59.906 45.833 0.00 0.00 0.00 2.92
3042 3206 4.509970 TCTTGGTCATCGTAGTTGTTGTTG 59.490 41.667 0.00 0.00 0.00 3.33
3098 3266 8.932945 ATGCAAGTATCCGAACATATATACAG 57.067 34.615 0.00 0.00 0.00 2.74
3103 3271 5.411361 GGCAATGCAAGTATCCGAACATATA 59.589 40.000 7.79 0.00 0.00 0.86
3106 3274 2.358898 GGCAATGCAAGTATCCGAACAT 59.641 45.455 7.79 0.00 0.00 2.71
3109 3277 2.121291 TGGCAATGCAAGTATCCGAA 57.879 45.000 7.79 0.00 0.00 4.30
3110 3278 2.346766 ATGGCAATGCAAGTATCCGA 57.653 45.000 7.79 0.00 0.00 4.55
3111 3279 3.304659 GGTAATGGCAATGCAAGTATCCG 60.305 47.826 7.79 0.00 0.00 4.18
3112 3280 3.891366 AGGTAATGGCAATGCAAGTATCC 59.109 43.478 7.79 4.24 0.00 2.59
3113 3281 4.261741 CCAGGTAATGGCAATGCAAGTATC 60.262 45.833 7.79 0.00 43.83 2.24
3117 3287 2.589798 CCAGGTAATGGCAATGCAAG 57.410 50.000 7.79 0.00 43.83 4.01
3157 3335 6.313905 AGAAACCGAGTCATATGATGAACAAC 59.686 38.462 9.02 0.00 41.69 3.32
3167 3345 3.068165 TGCGATCAGAAACCGAGTCATAT 59.932 43.478 0.00 0.00 0.00 1.78
3181 3359 0.935898 GATCTGGTTGCTGCGATCAG 59.064 55.000 21.73 21.73 43.16 2.90
3183 3361 0.528466 TCGATCTGGTTGCTGCGATC 60.528 55.000 0.00 0.00 0.00 3.69
3209 3388 3.521796 GCAAATGGGCTCTCCGGC 61.522 66.667 0.00 0.00 38.76 6.13
3221 3400 3.876198 GGCGCCGACGATGCAAAT 61.876 61.111 12.58 0.00 43.93 2.32
3256 3435 0.677842 CTTTCTTTGCCTGCCTGCTT 59.322 50.000 0.00 0.00 0.00 3.91
3258 3437 0.675633 TTCTTTCTTTGCCTGCCTGC 59.324 50.000 0.00 0.00 0.00 4.85
3432 3612 2.270047 TCGTTCTTTCGAAACCGTGTT 58.730 42.857 6.47 0.00 36.89 3.32
3516 3699 1.751351 TCTATCCTGCAACTGTCCTCG 59.249 52.381 0.00 0.00 0.00 4.63
3774 3967 4.142337 TGCATGACCAAAGCATGATACAAG 60.142 41.667 7.68 0.00 44.49 3.16
3821 4016 7.162082 AGCTGCCTATACATTATACACTTTCC 58.838 38.462 0.00 0.00 0.00 3.13
3828 4023 9.877178 ACATTTCTAGCTGCCTATACATTATAC 57.123 33.333 0.00 0.00 0.00 1.47
3829 4024 9.875691 CACATTTCTAGCTGCCTATACATTATA 57.124 33.333 0.00 0.00 0.00 0.98
3830 4025 7.335422 GCACATTTCTAGCTGCCTATACATTAT 59.665 37.037 0.00 0.00 0.00 1.28
3832 4027 5.471456 GCACATTTCTAGCTGCCTATACATT 59.529 40.000 0.00 0.00 0.00 2.71
3833 4028 4.999950 GCACATTTCTAGCTGCCTATACAT 59.000 41.667 0.00 0.00 0.00 2.29
3834 4029 4.141733 TGCACATTTCTAGCTGCCTATACA 60.142 41.667 0.00 0.00 0.00 2.29
3835 4030 4.380531 TGCACATTTCTAGCTGCCTATAC 58.619 43.478 0.00 0.00 0.00 1.47
3837 4032 3.565764 TGCACATTTCTAGCTGCCTAT 57.434 42.857 0.00 0.00 0.00 2.57
3838 4033 3.565764 ATGCACATTTCTAGCTGCCTA 57.434 42.857 0.00 0.00 0.00 3.93
3839 4034 2.431954 ATGCACATTTCTAGCTGCCT 57.568 45.000 0.00 0.00 0.00 4.75
3840 4035 3.817084 TCATATGCACATTTCTAGCTGCC 59.183 43.478 0.00 0.00 0.00 4.85
3841 4036 4.514441 AGTCATATGCACATTTCTAGCTGC 59.486 41.667 0.00 0.00 0.00 5.25
3842 4037 5.560375 GCAGTCATATGCACATTTCTAGCTG 60.560 44.000 0.00 0.00 45.77 4.24
3843 4038 4.514441 GCAGTCATATGCACATTTCTAGCT 59.486 41.667 0.00 0.00 45.77 3.32
3844 4039 4.781071 GCAGTCATATGCACATTTCTAGC 58.219 43.478 0.00 0.00 45.77 3.42
3855 4050 4.334759 ACTGAACAGATTGCAGTCATATGC 59.665 41.667 12.16 0.00 46.68 3.14
3858 4053 6.758416 GTGATACTGAACAGATTGCAGTCATA 59.242 38.462 12.16 0.00 41.58 2.15
3859 4054 5.583854 GTGATACTGAACAGATTGCAGTCAT 59.416 40.000 12.16 0.00 41.58 3.06
3860 4055 4.931601 GTGATACTGAACAGATTGCAGTCA 59.068 41.667 12.16 0.00 41.58 3.41
3861 4056 4.931601 TGTGATACTGAACAGATTGCAGTC 59.068 41.667 8.87 0.00 41.58 3.51
3862 4057 4.898320 TGTGATACTGAACAGATTGCAGT 58.102 39.130 8.87 0.00 44.38 4.40
3863 4058 5.868043 TTGTGATACTGAACAGATTGCAG 57.132 39.130 8.87 0.00 35.81 4.41
3864 4059 6.430616 TCATTTGTGATACTGAACAGATTGCA 59.569 34.615 8.87 0.00 0.00 4.08
3865 4060 6.744537 GTCATTTGTGATACTGAACAGATTGC 59.255 38.462 8.87 0.00 0.00 3.56
3866 4061 7.809665 TGTCATTTGTGATACTGAACAGATTG 58.190 34.615 8.87 0.00 0.00 2.67
3867 4062 7.984422 TGTCATTTGTGATACTGAACAGATT 57.016 32.000 8.87 0.00 0.00 2.40
3868 4063 9.842775 ATATGTCATTTGTGATACTGAACAGAT 57.157 29.630 8.87 0.00 0.00 2.90
3869 4064 9.101655 CATATGTCATTTGTGATACTGAACAGA 57.898 33.333 8.87 0.00 0.00 3.41
3902 4097 7.782897 TTTCTAGCTGCCTATATACACAGAT 57.217 36.000 0.00 7.16 32.75 2.90
3957 4157 7.095270 TGAGGGACGAAAACTATACTTTTCTC 58.905 38.462 12.74 9.91 37.80 2.87
3958 4158 7.001099 TGAGGGACGAAAACTATACTTTTCT 57.999 36.000 12.74 4.04 37.80 2.52
3959 4159 7.662604 TTGAGGGACGAAAACTATACTTTTC 57.337 36.000 7.26 7.26 36.96 2.29
3960 4160 8.631480 AATTGAGGGACGAAAACTATACTTTT 57.369 30.769 0.00 0.00 0.00 2.27
3961 4161 8.101419 AGAATTGAGGGACGAAAACTATACTTT 58.899 33.333 0.00 0.00 0.00 2.66
3962 4162 7.621796 AGAATTGAGGGACGAAAACTATACTT 58.378 34.615 0.00 0.00 0.00 2.24
3963 4163 7.184067 AGAATTGAGGGACGAAAACTATACT 57.816 36.000 0.00 0.00 0.00 2.12
3964 4164 7.845066 AAGAATTGAGGGACGAAAACTATAC 57.155 36.000 0.00 0.00 0.00 1.47
3982 4182 4.762289 AATCTAGACTCCGCCAAGAATT 57.238 40.909 0.00 0.00 0.00 2.17
3983 4183 4.446371 CAAATCTAGACTCCGCCAAGAAT 58.554 43.478 0.00 0.00 0.00 2.40
3984 4184 3.369471 CCAAATCTAGACTCCGCCAAGAA 60.369 47.826 0.00 0.00 0.00 2.52
3985 4185 2.168521 CCAAATCTAGACTCCGCCAAGA 59.831 50.000 0.00 0.00 0.00 3.02
3986 4186 2.093447 ACCAAATCTAGACTCCGCCAAG 60.093 50.000 0.00 0.00 0.00 3.61
3987 4187 1.906574 ACCAAATCTAGACTCCGCCAA 59.093 47.619 0.00 0.00 0.00 4.52
3988 4188 1.480954 GACCAAATCTAGACTCCGCCA 59.519 52.381 0.00 0.00 0.00 5.69
3989 4189 1.202545 GGACCAAATCTAGACTCCGCC 60.203 57.143 0.00 0.00 0.00 6.13
3990 4190 1.202545 GGGACCAAATCTAGACTCCGC 60.203 57.143 0.00 0.00 0.00 5.54
3991 4191 2.362717 GAGGGACCAAATCTAGACTCCG 59.637 54.545 0.00 0.00 0.00 4.63
3992 4192 3.375699 TGAGGGACCAAATCTAGACTCC 58.624 50.000 0.00 0.00 0.00 3.85
3993 4193 4.468153 AGTTGAGGGACCAAATCTAGACTC 59.532 45.833 0.00 0.00 0.00 3.36
3994 4194 4.430441 AGTTGAGGGACCAAATCTAGACT 58.570 43.478 0.00 0.00 0.00 3.24
3995 4195 4.383226 GGAGTTGAGGGACCAAATCTAGAC 60.383 50.000 0.00 0.00 40.00 2.59
3996 4196 3.775316 GGAGTTGAGGGACCAAATCTAGA 59.225 47.826 0.00 0.00 40.00 2.43
3997 4197 3.519510 TGGAGTTGAGGGACCAAATCTAG 59.480 47.826 0.00 0.00 40.00 2.43
3998 4198 3.526899 TGGAGTTGAGGGACCAAATCTA 58.473 45.455 0.00 0.00 40.00 1.98
3999 4199 2.348472 TGGAGTTGAGGGACCAAATCT 58.652 47.619 0.00 0.00 40.00 2.40
4000 4200 2.879103 TGGAGTTGAGGGACCAAATC 57.121 50.000 0.00 0.00 39.56 2.17
4001 4201 3.611025 TTTGGAGTTGAGGGACCAAAT 57.389 42.857 0.00 0.00 44.11 2.32
4002 4202 3.028130 GTTTTGGAGTTGAGGGACCAAA 58.972 45.455 0.00 0.00 46.21 3.28
4003 4203 2.661718 GTTTTGGAGTTGAGGGACCAA 58.338 47.619 0.00 0.00 40.05 3.67
4004 4204 1.133606 GGTTTTGGAGTTGAGGGACCA 60.134 52.381 0.00 0.00 0.00 4.02
4005 4205 1.617322 GGTTTTGGAGTTGAGGGACC 58.383 55.000 0.00 0.00 0.00 4.46
4006 4206 1.235724 CGGTTTTGGAGTTGAGGGAC 58.764 55.000 0.00 0.00 0.00 4.46
4007 4207 0.109723 CCGGTTTTGGAGTTGAGGGA 59.890 55.000 0.00 0.00 0.00 4.20
4008 4208 0.109723 TCCGGTTTTGGAGTTGAGGG 59.890 55.000 0.00 0.00 33.05 4.30
4009 4209 1.235724 GTCCGGTTTTGGAGTTGAGG 58.764 55.000 0.00 0.00 39.14 3.86
4010 4210 1.961793 TGTCCGGTTTTGGAGTTGAG 58.038 50.000 0.00 0.00 39.14 3.02
4011 4211 2.018515 GTTGTCCGGTTTTGGAGTTGA 58.981 47.619 0.00 0.00 39.14 3.18
4012 4212 2.021457 AGTTGTCCGGTTTTGGAGTTG 58.979 47.619 0.00 0.00 39.14 3.16
4013 4213 2.425668 CAAGTTGTCCGGTTTTGGAGTT 59.574 45.455 0.00 0.00 39.14 3.01
4014 4214 2.021457 CAAGTTGTCCGGTTTTGGAGT 58.979 47.619 0.00 0.00 39.14 3.85
4015 4215 1.269051 GCAAGTTGTCCGGTTTTGGAG 60.269 52.381 0.00 0.00 39.14 3.86
4016 4216 0.741915 GCAAGTTGTCCGGTTTTGGA 59.258 50.000 0.00 0.00 35.04 3.53
4017 4217 0.457851 TGCAAGTTGTCCGGTTTTGG 59.542 50.000 0.00 0.00 0.00 3.28
4018 4218 1.555477 GTGCAAGTTGTCCGGTTTTG 58.445 50.000 0.00 1.72 0.00 2.44
4019 4219 0.458260 GGTGCAAGTTGTCCGGTTTT 59.542 50.000 0.00 0.00 0.00 2.43
4020 4220 1.388837 GGGTGCAAGTTGTCCGGTTT 61.389 55.000 0.00 0.00 0.00 3.27
4021 4221 1.826487 GGGTGCAAGTTGTCCGGTT 60.826 57.895 0.00 0.00 0.00 4.44
4022 4222 2.203294 GGGTGCAAGTTGTCCGGT 60.203 61.111 0.00 0.00 0.00 5.28
4023 4223 0.250553 TAAGGGTGCAAGTTGTCCGG 60.251 55.000 4.48 0.00 0.00 5.14
4024 4224 1.265905 GTTAAGGGTGCAAGTTGTCCG 59.734 52.381 4.48 0.00 0.00 4.79
4025 4225 2.583143 AGTTAAGGGTGCAAGTTGTCC 58.417 47.619 4.48 7.60 0.00 4.02
4026 4226 4.649088 AAAGTTAAGGGTGCAAGTTGTC 57.351 40.909 4.48 0.00 0.00 3.18
4027 4227 4.464597 TGAAAAGTTAAGGGTGCAAGTTGT 59.535 37.500 4.48 0.00 0.00 3.32
4028 4228 5.004922 TGAAAAGTTAAGGGTGCAAGTTG 57.995 39.130 0.00 0.00 0.00 3.16
4029 4229 5.669164 TTGAAAAGTTAAGGGTGCAAGTT 57.331 34.783 0.00 0.00 0.00 2.66
4030 4230 5.416083 GTTTGAAAAGTTAAGGGTGCAAGT 58.584 37.500 0.00 0.00 0.00 3.16
4031 4231 4.808895 GGTTTGAAAAGTTAAGGGTGCAAG 59.191 41.667 0.00 0.00 0.00 4.01
4032 4232 4.678309 CGGTTTGAAAAGTTAAGGGTGCAA 60.678 41.667 0.00 0.00 0.00 4.08
4033 4233 3.181485 CGGTTTGAAAAGTTAAGGGTGCA 60.181 43.478 0.00 0.00 0.00 4.57
4034 4234 3.377439 CGGTTTGAAAAGTTAAGGGTGC 58.623 45.455 0.00 0.00 0.00 5.01
4035 4235 3.633065 TCCGGTTTGAAAAGTTAAGGGTG 59.367 43.478 0.00 0.00 0.00 4.61
4036 4236 3.633525 GTCCGGTTTGAAAAGTTAAGGGT 59.366 43.478 0.00 0.00 0.00 4.34
4037 4237 3.633065 TGTCCGGTTTGAAAAGTTAAGGG 59.367 43.478 0.00 0.00 0.00 3.95
4038 4238 4.904253 TGTCCGGTTTGAAAAGTTAAGG 57.096 40.909 0.00 0.00 0.00 2.69
4039 4239 6.126568 TCTTGTCCGGTTTGAAAAGTTAAG 57.873 37.500 0.00 0.00 32.41 1.85
4040 4240 6.702716 ATCTTGTCCGGTTTGAAAAGTTAA 57.297 33.333 0.00 0.00 32.41 2.01
4041 4241 6.319152 TGAATCTTGTCCGGTTTGAAAAGTTA 59.681 34.615 0.00 0.00 32.41 2.24
4042 4242 5.126384 TGAATCTTGTCCGGTTTGAAAAGTT 59.874 36.000 0.00 0.00 32.41 2.66
4043 4243 4.642885 TGAATCTTGTCCGGTTTGAAAAGT 59.357 37.500 0.00 0.00 32.41 2.66
4044 4244 5.181690 TGAATCTTGTCCGGTTTGAAAAG 57.818 39.130 0.00 0.00 31.89 2.27
4045 4245 5.782893 ATGAATCTTGTCCGGTTTGAAAA 57.217 34.783 0.00 0.00 0.00 2.29
4046 4246 5.278758 GGAATGAATCTTGTCCGGTTTGAAA 60.279 40.000 0.00 0.00 0.00 2.69
4047 4247 4.217550 GGAATGAATCTTGTCCGGTTTGAA 59.782 41.667 0.00 0.00 0.00 2.69
4048 4248 3.756434 GGAATGAATCTTGTCCGGTTTGA 59.244 43.478 0.00 0.00 0.00 2.69
4049 4249 3.758554 AGGAATGAATCTTGTCCGGTTTG 59.241 43.478 0.00 0.00 35.19 2.93
4050 4250 3.758554 CAGGAATGAATCTTGTCCGGTTT 59.241 43.478 0.00 0.00 35.19 3.27
4051 4251 3.347216 CAGGAATGAATCTTGTCCGGTT 58.653 45.455 0.00 0.00 35.19 4.44
4052 4252 2.356125 CCAGGAATGAATCTTGTCCGGT 60.356 50.000 0.00 0.00 33.44 5.28
4053 4253 2.292267 CCAGGAATGAATCTTGTCCGG 58.708 52.381 0.00 0.00 33.44 5.14
4054 4254 2.939103 GACCAGGAATGAATCTTGTCCG 59.061 50.000 0.00 0.00 33.44 4.79
4055 4255 3.691609 GTGACCAGGAATGAATCTTGTCC 59.308 47.826 0.00 0.00 33.44 4.02
4056 4256 3.372206 CGTGACCAGGAATGAATCTTGTC 59.628 47.826 0.00 0.00 33.44 3.18
4057 4257 3.338249 CGTGACCAGGAATGAATCTTGT 58.662 45.455 0.00 0.00 33.44 3.16
4058 4258 2.679837 CCGTGACCAGGAATGAATCTTG 59.320 50.000 0.00 0.00 35.01 3.02
4059 4259 2.305927 ACCGTGACCAGGAATGAATCTT 59.694 45.455 0.00 0.00 0.00 2.40
4060 4260 1.909302 ACCGTGACCAGGAATGAATCT 59.091 47.619 0.00 0.00 0.00 2.40
4061 4261 2.403252 ACCGTGACCAGGAATGAATC 57.597 50.000 0.00 0.00 0.00 2.52
4062 4262 2.879103 AACCGTGACCAGGAATGAAT 57.121 45.000 0.00 0.00 0.00 2.57
4063 4263 2.621055 CAAAACCGTGACCAGGAATGAA 59.379 45.455 0.00 0.00 0.00 2.57
4064 4264 2.158740 TCAAAACCGTGACCAGGAATGA 60.159 45.455 0.00 0.00 0.00 2.57
4065 4265 2.031157 GTCAAAACCGTGACCAGGAATG 60.031 50.000 0.00 0.00 41.79 2.67
4066 4266 2.227194 GTCAAAACCGTGACCAGGAAT 58.773 47.619 0.00 0.00 41.79 3.01
4067 4267 1.670791 GTCAAAACCGTGACCAGGAA 58.329 50.000 0.00 0.00 41.79 3.36
4068 4268 3.390003 GTCAAAACCGTGACCAGGA 57.610 52.632 0.00 0.00 41.79 3.86
4078 4278 1.929230 CACCAAAACCGGTCAAAACC 58.071 50.000 8.04 0.00 42.66 3.27
4079 4279 1.282817 GCACCAAAACCGGTCAAAAC 58.717 50.000 8.04 0.00 37.07 2.43
4080 4280 0.175989 GGCACCAAAACCGGTCAAAA 59.824 50.000 8.04 0.00 37.07 2.44
4081 4281 1.817209 GGCACCAAAACCGGTCAAA 59.183 52.632 8.04 0.00 37.07 2.69
4082 4282 3.527641 GGCACCAAAACCGGTCAA 58.472 55.556 8.04 0.00 37.07 3.18
4095 4295 1.388837 AACGGTCAAAACTGGGGCAC 61.389 55.000 0.00 0.00 35.97 5.01
4096 4296 1.076632 AACGGTCAAAACTGGGGCA 60.077 52.632 0.00 0.00 35.97 5.36
4097 4297 1.658114 GAACGGTCAAAACTGGGGC 59.342 57.895 0.00 0.00 35.97 5.80
4098 4298 2.337361 GGAACGGTCAAAACTGGGG 58.663 57.895 1.31 0.00 35.97 4.96
4112 4312 4.215613 AGGTAAGCAAATTTGAGTCGGAAC 59.784 41.667 22.31 8.57 0.00 3.62
4113 4313 4.394729 AGGTAAGCAAATTTGAGTCGGAA 58.605 39.130 22.31 0.00 0.00 4.30
4114 4314 4.015872 AGGTAAGCAAATTTGAGTCGGA 57.984 40.909 22.31 0.00 0.00 4.55
4115 4315 4.766404 AAGGTAAGCAAATTTGAGTCGG 57.234 40.909 22.31 0.00 0.00 4.79
4116 4316 5.629435 GGAAAAGGTAAGCAAATTTGAGTCG 59.371 40.000 22.31 0.00 0.00 4.18
4117 4317 6.512297 TGGAAAAGGTAAGCAAATTTGAGTC 58.488 36.000 22.31 4.31 0.00 3.36
4118 4318 6.478512 TGGAAAAGGTAAGCAAATTTGAGT 57.521 33.333 22.31 10.43 0.00 3.41
4119 4319 6.986231 ACTTGGAAAAGGTAAGCAAATTTGAG 59.014 34.615 22.31 7.21 0.00 3.02
4120 4320 6.883744 ACTTGGAAAAGGTAAGCAAATTTGA 58.116 32.000 22.31 0.00 0.00 2.69
4121 4321 6.202762 GGACTTGGAAAAGGTAAGCAAATTTG 59.797 38.462 14.03 14.03 0.00 2.32
4122 4322 6.126911 TGGACTTGGAAAAGGTAAGCAAATTT 60.127 34.615 0.00 0.00 0.00 1.82
4123 4323 5.365314 TGGACTTGGAAAAGGTAAGCAAATT 59.635 36.000 0.00 0.00 0.00 1.82
4124 4324 4.898861 TGGACTTGGAAAAGGTAAGCAAAT 59.101 37.500 0.00 0.00 0.00 2.32
4125 4325 4.098807 GTGGACTTGGAAAAGGTAAGCAAA 59.901 41.667 0.00 0.00 0.00 3.68
4126 4326 3.634910 GTGGACTTGGAAAAGGTAAGCAA 59.365 43.478 0.00 0.00 0.00 3.91
4127 4327 3.219281 GTGGACTTGGAAAAGGTAAGCA 58.781 45.455 0.00 0.00 0.00 3.91
4128 4328 2.225727 CGTGGACTTGGAAAAGGTAAGC 59.774 50.000 0.00 0.00 0.00 3.09
4129 4329 3.473625 ACGTGGACTTGGAAAAGGTAAG 58.526 45.455 0.00 0.00 0.00 2.34
4130 4330 3.564053 ACGTGGACTTGGAAAAGGTAA 57.436 42.857 0.00 0.00 0.00 2.85
4131 4331 3.642848 AGTACGTGGACTTGGAAAAGGTA 59.357 43.478 0.00 0.00 0.00 3.08
4132 4332 2.436911 AGTACGTGGACTTGGAAAAGGT 59.563 45.455 0.00 0.00 0.00 3.50
4133 4333 3.121738 AGTACGTGGACTTGGAAAAGG 57.878 47.619 0.00 0.00 0.00 3.11
4134 4334 6.796705 AAATAGTACGTGGACTTGGAAAAG 57.203 37.500 0.00 0.00 0.00 2.27
4135 4335 6.766944 TGAAAATAGTACGTGGACTTGGAAAA 59.233 34.615 0.00 0.00 0.00 2.29
4136 4336 6.289834 TGAAAATAGTACGTGGACTTGGAAA 58.710 36.000 0.00 0.00 0.00 3.13
4137 4337 5.856156 TGAAAATAGTACGTGGACTTGGAA 58.144 37.500 0.00 0.00 0.00 3.53
4138 4338 5.471556 TGAAAATAGTACGTGGACTTGGA 57.528 39.130 0.00 0.00 0.00 3.53
4139 4339 6.548441 TTTGAAAATAGTACGTGGACTTGG 57.452 37.500 0.00 0.00 0.00 3.61
4140 4340 7.477422 CGAATTTGAAAATAGTACGTGGACTTG 59.523 37.037 0.00 0.00 0.00 3.16
4141 4341 7.360607 CCGAATTTGAAAATAGTACGTGGACTT 60.361 37.037 0.00 0.00 0.00 3.01
4142 4342 6.091713 CCGAATTTGAAAATAGTACGTGGACT 59.908 38.462 0.00 0.00 0.00 3.85
4143 4343 6.128472 ACCGAATTTGAAAATAGTACGTGGAC 60.128 38.462 0.00 0.00 0.00 4.02
4144 4344 5.933463 ACCGAATTTGAAAATAGTACGTGGA 59.067 36.000 0.00 0.00 0.00 4.02
4145 4345 6.173191 ACCGAATTTGAAAATAGTACGTGG 57.827 37.500 0.00 0.00 0.00 4.94
4146 4346 8.437742 AGTAACCGAATTTGAAAATAGTACGTG 58.562 33.333 0.00 0.00 0.00 4.49
4147 4347 8.538409 AGTAACCGAATTTGAAAATAGTACGT 57.462 30.769 0.00 0.00 0.00 3.57
4148 4348 9.815936 AAAGTAACCGAATTTGAAAATAGTACG 57.184 29.630 0.00 0.00 0.00 3.67
4179 4379 9.923786 GCAAAATTTAAAAAGGTTCACGTATTT 57.076 25.926 0.00 0.00 0.00 1.40
4180 4380 8.270111 CGCAAAATTTAAAAAGGTTCACGTATT 58.730 29.630 0.00 0.00 0.00 1.89
4181 4381 7.435784 ACGCAAAATTTAAAAAGGTTCACGTAT 59.564 29.630 0.00 0.00 0.00 3.06
4182 4382 6.750963 ACGCAAAATTTAAAAAGGTTCACGTA 59.249 30.769 0.00 0.00 0.00 3.57
4183 4383 5.577554 ACGCAAAATTTAAAAAGGTTCACGT 59.422 32.000 0.00 0.00 0.00 4.49
4184 4384 6.026873 ACGCAAAATTTAAAAAGGTTCACG 57.973 33.333 0.00 0.00 0.00 4.35
4185 4385 7.223193 AGGTACGCAAAATTTAAAAAGGTTCAC 59.777 33.333 0.00 0.00 0.00 3.18
4186 4386 7.266400 AGGTACGCAAAATTTAAAAAGGTTCA 58.734 30.769 0.00 0.00 0.00 3.18
4187 4387 7.703298 AGGTACGCAAAATTTAAAAAGGTTC 57.297 32.000 0.00 0.00 0.00 3.62
4188 4388 8.495361 AAAGGTACGCAAAATTTAAAAAGGTT 57.505 26.923 0.00 0.00 0.00 3.50
4189 4389 8.495361 AAAAGGTACGCAAAATTTAAAAAGGT 57.505 26.923 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.