Multiple sequence alignment - TraesCS5A01G178600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G178600 chr5A 100.000 4678 0 0 1 4678 376544327 376549004 0.000000e+00 8639.0
1 TraesCS5A01G178600 chr5D 95.400 2674 93 21 1478 4129 284974467 284977132 0.000000e+00 4229.0
2 TraesCS5A01G178600 chr5D 95.184 1495 39 14 1 1474 284972901 284974383 0.000000e+00 2331.0
3 TraesCS5A01G178600 chr5D 92.029 138 11 0 4129 4266 284977185 284977322 1.330000e-45 195.0
4 TraesCS5A01G178600 chr5B 94.672 1389 48 15 1478 2846 322278282 322279664 0.000000e+00 2132.0
5 TraesCS5A01G178600 chr5B 95.827 1222 41 5 2914 4127 322279687 322280906 0.000000e+00 1965.0
6 TraesCS5A01G178600 chr5B 95.415 916 31 10 563 1474 322277290 322278198 0.000000e+00 1448.0
7 TraesCS5A01G178600 chr5B 92.435 542 30 5 30 563 322276671 322277209 0.000000e+00 763.0
8 TraesCS5A01G178600 chr5B 94.558 147 8 0 4116 4262 322280968 322281114 1.310000e-55 228.0
9 TraesCS5A01G178600 chr4B 89.076 119 10 1 4379 4494 564374055 564373937 1.360000e-30 145.0
10 TraesCS5A01G178600 chr7A 88.983 118 10 2 4383 4497 547526041 547525924 4.880000e-30 143.0
11 TraesCS5A01G178600 chr6B 87.603 121 12 2 4377 4494 638921011 638920891 2.270000e-28 137.0
12 TraesCS5A01G178600 chr3B 86.719 128 12 3 4373 4496 368604053 368604179 2.270000e-28 137.0
13 TraesCS5A01G178600 chr6D 88.136 118 9 4 4380 4493 174133038 174133154 8.160000e-28 135.0
14 TraesCS5A01G178600 chr4A 86.992 123 13 2 4379 4498 714067116 714067238 8.160000e-28 135.0
15 TraesCS5A01G178600 chr2B 87.500 120 12 2 4377 4493 142446758 142446639 8.160000e-28 135.0
16 TraesCS5A01G178600 chr2D 86.290 124 13 3 4373 4493 95519536 95519658 1.060000e-26 132.0
17 TraesCS5A01G178600 chr2A 85.827 127 14 3 4376 4498 16356300 16356174 1.060000e-26 132.0
18 TraesCS5A01G178600 chr2A 83.099 71 10 2 4262 4332 202107546 202107614 3.910000e-06 63.9
19 TraesCS5A01G178600 chr2A 100.000 28 0 0 4261 4288 578904600 578904573 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G178600 chr5A 376544327 376549004 4677 False 8639.000000 8639 100.000000 1 4678 1 chr5A.!!$F1 4677
1 TraesCS5A01G178600 chr5D 284972901 284977322 4421 False 2251.666667 4229 94.204333 1 4266 3 chr5D.!!$F1 4265
2 TraesCS5A01G178600 chr5B 322276671 322281114 4443 False 1307.200000 2132 94.581400 30 4262 5 chr5B.!!$F1 4232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 314 0.763652 AGCTGATCCAGGATCGCAAT 59.236 50.0 31.02 18.42 41.51 3.56 F
487 501 0.839946 TTCCCTCTAGCATTCTGGGC 59.160 55.0 0.00 0.00 37.83 5.36 F
1724 1916 2.205022 TATGCTTCTGCTGGCACTTT 57.795 45.0 0.00 0.00 41.39 2.66 F
3337 3544 0.739112 GCAGGAGCTACTGTCACAGC 60.739 60.0 26.79 7.92 40.59 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1482 1588 1.144913 AGGGCTTCTTGCTTGGTACAA 59.855 47.619 0.00 0.00 40.84 2.41 R
2473 2678 1.298339 GTTTTCGTTGCTGCGCAGT 60.298 52.632 35.80 0.00 40.61 4.40 R
3380 3587 0.037303 CAGATGTGGGTGCAGGAGTT 59.963 55.000 0.00 0.00 0.00 3.01 R
4382 4669 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.640029 ACAGAAACTCTTGGAACTACCGA 59.360 43.478 0.00 0.00 42.61 4.69
111 121 6.976934 TGGCTAGAGGTTTCTTTGAAAATT 57.023 33.333 0.00 0.00 34.79 1.82
113 123 7.433680 TGGCTAGAGGTTTCTTTGAAAATTTC 58.566 34.615 0.00 0.00 34.79 2.17
114 124 7.069331 TGGCTAGAGGTTTCTTTGAAAATTTCA 59.931 33.333 4.03 4.03 34.80 2.69
115 125 7.596621 GGCTAGAGGTTTCTTTGAAAATTTCAG 59.403 37.037 8.51 0.00 36.59 3.02
281 291 1.895131 GTGGCCATGAAATTGACCTGT 59.105 47.619 9.72 0.00 0.00 4.00
304 314 0.763652 AGCTGATCCAGGATCGCAAT 59.236 50.000 31.02 18.42 41.51 3.56
311 325 4.772100 TGATCCAGGATCGCAATAGTATGA 59.228 41.667 22.41 0.00 41.51 2.15
350 364 2.086869 CTGTGGGCACAAGTATTCCAG 58.913 52.381 0.00 0.00 41.33 3.86
377 391 2.418368 TTGTGTTGCCTCTGTGACTT 57.582 45.000 0.00 0.00 0.00 3.01
446 460 8.539770 AATGATGAGATAAAGGTATTAGCGTG 57.460 34.615 0.00 0.00 0.00 5.34
487 501 0.839946 TTCCCTCTAGCATTCTGGGC 59.160 55.000 0.00 0.00 37.83 5.36
563 578 8.020819 GCTGTTAGTGCTCTCAGTATTATCTAG 58.979 40.741 6.41 0.00 0.00 2.43
632 727 3.071023 TGTGTGGTTAGTCTTCCCTGAAG 59.929 47.826 0.00 0.00 40.65 3.02
678 773 6.588719 TGCCATATCTTACTGCTTTTTGTT 57.411 33.333 0.00 0.00 0.00 2.83
708 803 7.419865 GGTGTCTTAATAGGGCATTAACTACCT 60.420 40.741 0.00 0.00 34.77 3.08
1186 1289 9.890629 ACTGTGCTTCATTACTTCTTTATATGA 57.109 29.630 0.00 0.00 0.00 2.15
1447 1553 8.462016 GGTTTTAAGCTGTCACATTATCTCAAT 58.538 33.333 0.00 0.00 0.00 2.57
1474 1580 9.632638 ACAACATCATATAAGCTTGGAATAAGT 57.367 29.630 9.86 0.00 0.00 2.24
1475 1581 9.888878 CAACATCATATAAGCTTGGAATAAGTG 57.111 33.333 9.86 1.48 0.00 3.16
1476 1582 9.851686 AACATCATATAAGCTTGGAATAAGTGA 57.148 29.630 9.86 1.76 0.00 3.41
1478 1584 9.716531 CATCATATAAGCTTGGAATAAGTGAGA 57.283 33.333 9.86 0.00 0.00 3.27
1479 1585 9.941325 ATCATATAAGCTTGGAATAAGTGAGAG 57.059 33.333 9.86 0.00 0.00 3.20
1480 1586 9.147732 TCATATAAGCTTGGAATAAGTGAGAGA 57.852 33.333 9.86 0.00 0.00 3.10
1481 1587 9.770097 CATATAAGCTTGGAATAAGTGAGAGAA 57.230 33.333 9.86 0.00 0.00 2.87
1655 1847 8.874744 TGTACTTAGGTTGTACTTATCTGTCT 57.125 34.615 0.00 0.00 40.44 3.41
1668 1860 7.545362 ACTTATCTGTCTGTTATGTGCATTC 57.455 36.000 0.00 0.00 0.00 2.67
1670 1862 2.672874 TCTGTCTGTTATGTGCATTCGC 59.327 45.455 0.00 0.00 39.24 4.70
1724 1916 2.205022 TATGCTTCTGCTGGCACTTT 57.795 45.000 0.00 0.00 41.39 2.66
1857 2049 4.515191 TGAAAAGTCACTTGCAGGTACATC 59.485 41.667 0.00 2.70 0.00 3.06
1965 2159 3.264450 ACAGGCTAGCAAAGTACATTCCT 59.736 43.478 18.24 0.00 0.00 3.36
2018 2212 8.758829 ACACTTCTCATATACTTGGTATTGTGA 58.241 33.333 0.00 1.90 30.79 3.58
2020 2214 9.770097 ACTTCTCATATACTTGGTATTGTGATG 57.230 33.333 0.00 6.16 30.79 3.07
2094 2288 2.717639 ACAAAGATCCAGGGGATTCG 57.282 50.000 0.00 0.00 43.27 3.34
2130 2329 7.954666 TGATGGATCCTCGTATGTATAATGA 57.045 36.000 14.23 0.00 0.00 2.57
2256 2455 8.481314 AGAAATTCATCTAGCATAGTCAACTCA 58.519 33.333 0.00 0.00 40.38 3.41
2267 2466 8.494016 AGCATAGTCAACTCACTTATTTTACC 57.506 34.615 0.00 0.00 0.00 2.85
2270 2469 9.436957 CATAGTCAACTCACTTATTTTACCACT 57.563 33.333 0.00 0.00 0.00 4.00
2274 2473 8.837389 GTCAACTCACTTATTTTACCACTCTTT 58.163 33.333 0.00 0.00 0.00 2.52
2286 2486 3.490348 ACCACTCTTTAGTTTGCATGCT 58.510 40.909 20.33 0.00 31.97 3.79
2334 2534 7.390440 TGTGGTTCCTCAGTAATTAGAAACATG 59.610 37.037 5.68 0.00 36.61 3.21
2431 2636 9.632807 TGGAAGTGTTCAATTTATTTTATTCCG 57.367 29.630 0.00 0.00 35.24 4.30
2456 2661 7.411804 CGTTCATCAATTTTTGGCCTTGAATAC 60.412 37.037 3.32 4.56 33.03 1.89
2458 2663 5.159273 TCAATTTTTGGCCTTGAATACCC 57.841 39.130 3.32 0.00 0.00 3.69
2512 2717 7.435068 AAACACGTTGATATAGCTTCAAACT 57.565 32.000 0.92 0.00 35.03 2.66
2708 2913 3.562182 TCCCCTGTTTTCCTCAGTTTTC 58.438 45.455 0.00 0.00 0.00 2.29
2853 3058 2.459934 CGTTCCAAAAGCAGTCCAAAC 58.540 47.619 0.00 0.00 0.00 2.93
2878 3083 9.418045 ACGCAAATGCTTGTAAAATACTTTATT 57.582 25.926 3.63 0.00 39.32 1.40
3065 3272 7.798516 CGGTTTGTAATCTCATTCATATTTCCG 59.201 37.037 0.00 0.00 0.00 4.30
3337 3544 0.739112 GCAGGAGCTACTGTCACAGC 60.739 60.000 26.79 7.92 40.59 4.40
3392 3599 2.352805 CCCTCAACTCCTGCACCC 59.647 66.667 0.00 0.00 0.00 4.61
3418 3625 2.355132 CTGAATCTGCATCTCAAGGTGC 59.645 50.000 8.33 8.33 41.61 5.01
3651 3858 1.926511 GCCGGAGTTCCAGCAATGTG 61.927 60.000 5.05 0.00 39.22 3.21
3971 4184 6.772360 TTGCTATGCAATTTGTTATGAGGA 57.228 33.333 0.45 0.00 43.99 3.71
3981 4194 7.384115 GCAATTTGTTATGAGGATGATTGATGG 59.616 37.037 0.00 0.00 0.00 3.51
3989 4202 6.009908 TGAGGATGATTGATGGTCAGAAAT 57.990 37.500 0.00 0.00 0.00 2.17
3992 4205 7.718314 TGAGGATGATTGATGGTCAGAAATAAG 59.282 37.037 0.00 0.00 0.00 1.73
3993 4206 7.809238 AGGATGATTGATGGTCAGAAATAAGA 58.191 34.615 0.00 0.00 0.00 2.10
3996 4209 6.639563 TGATTGATGGTCAGAAATAAGACGA 58.360 36.000 0.00 0.00 35.63 4.20
4000 4213 8.648557 TTGATGGTCAGAAATAAGACGATTAG 57.351 34.615 0.00 0.00 34.08 1.73
4017 4230 5.238432 ACGATTAGCAGTGTTTTCATGTCAA 59.762 36.000 0.00 0.00 0.00 3.18
4023 4237 2.299867 AGTGTTTTCATGTCAATGCCCC 59.700 45.455 0.00 0.00 33.47 5.80
4029 4243 3.464720 TCATGTCAATGCCCCCTTTTA 57.535 42.857 0.00 0.00 33.47 1.52
4043 4257 3.187842 CCCCTTTTAAGTGTGTACTTCGC 59.812 47.826 0.00 0.00 43.53 4.70
4092 4306 5.394553 CCATCAAAAGTCTAGGCAAAATCCC 60.395 44.000 0.00 0.00 0.00 3.85
4097 4311 5.514500 AAGTCTAGGCAAAATCCCAAGTA 57.486 39.130 0.00 0.00 0.00 2.24
4148 4435 8.142994 ACATCTACTAACTTGAAACTTGTGTG 57.857 34.615 0.00 0.00 0.00 3.82
4153 4440 3.004752 ACTTGAAACTTGTGTGCTCCT 57.995 42.857 0.00 0.00 0.00 3.69
4160 4447 2.508526 ACTTGTGTGCTCCTTCCATTC 58.491 47.619 0.00 0.00 0.00 2.67
4182 4469 3.689649 CGGACATATAGGGCCTAATTTGC 59.310 47.826 18.91 9.69 0.00 3.68
4195 4482 6.183360 GGGCCTAATTTGCATTTTGAGATTTG 60.183 38.462 0.84 0.00 0.00 2.32
4272 4559 6.600882 TCACTAGAAACTAGTACCCCTTTG 57.399 41.667 10.46 0.00 0.00 2.77
4273 4560 6.080009 TCACTAGAAACTAGTACCCCTTTGT 58.920 40.000 10.46 0.00 0.00 2.83
4274 4561 7.240897 TCACTAGAAACTAGTACCCCTTTGTA 58.759 38.462 10.46 0.00 0.00 2.41
4275 4562 7.729881 TCACTAGAAACTAGTACCCCTTTGTAA 59.270 37.037 10.46 0.00 0.00 2.41
4276 4563 8.370182 CACTAGAAACTAGTACCCCTTTGTAAA 58.630 37.037 10.46 0.00 0.00 2.01
4277 4564 8.591940 ACTAGAAACTAGTACCCCTTTGTAAAG 58.408 37.037 9.31 0.00 35.79 1.85
4278 4565 7.622502 AGAAACTAGTACCCCTTTGTAAAGA 57.377 36.000 5.95 0.00 38.28 2.52
4279 4566 8.037723 AGAAACTAGTACCCCTTTGTAAAGAA 57.962 34.615 5.95 0.00 38.28 2.52
4280 4567 8.496916 AGAAACTAGTACCCCTTTGTAAAGAAA 58.503 33.333 5.95 0.00 38.28 2.52
4281 4568 9.293404 GAAACTAGTACCCCTTTGTAAAGAAAT 57.707 33.333 5.95 0.00 38.28 2.17
4290 4577 9.462606 ACCCCTTTGTAAAGAAATATAAGAGTG 57.537 33.333 5.95 0.00 38.28 3.51
4291 4578 9.462606 CCCCTTTGTAAAGAAATATAAGAGTGT 57.537 33.333 5.95 0.00 38.28 3.55
4307 4594 8.994429 ATAAGAGTGTGTTTAGATCACTGAAG 57.006 34.615 1.78 0.00 41.58 3.02
4308 4595 6.412362 AGAGTGTGTTTAGATCACTGAAGT 57.588 37.500 1.78 0.00 41.58 3.01
4309 4596 7.526142 AGAGTGTGTTTAGATCACTGAAGTA 57.474 36.000 1.78 0.00 41.58 2.24
4310 4597 7.598278 AGAGTGTGTTTAGATCACTGAAGTAG 58.402 38.462 1.78 0.00 41.58 2.57
4311 4598 7.231722 AGAGTGTGTTTAGATCACTGAAGTAGT 59.768 37.037 1.78 0.00 41.58 2.73
4324 4611 4.738740 ACTGAAGTAGTGATATAAACGCGC 59.261 41.667 5.73 0.00 38.49 6.86
4325 4612 4.928601 TGAAGTAGTGATATAAACGCGCT 58.071 39.130 5.73 0.00 0.00 5.92
4326 4613 5.345702 TGAAGTAGTGATATAAACGCGCTT 58.654 37.500 5.73 1.77 0.00 4.68
4327 4614 6.497437 TGAAGTAGTGATATAAACGCGCTTA 58.503 36.000 5.73 4.84 0.00 3.09
4328 4615 7.143340 TGAAGTAGTGATATAAACGCGCTTAT 58.857 34.615 17.88 17.88 0.00 1.73
4329 4616 8.291740 TGAAGTAGTGATATAAACGCGCTTATA 58.708 33.333 20.66 20.66 0.00 0.98
4330 4617 9.286946 GAAGTAGTGATATAAACGCGCTTATAT 57.713 33.333 26.56 26.56 37.23 0.86
4331 4618 9.635520 AAGTAGTGATATAAACGCGCTTATATT 57.364 29.630 26.81 17.70 35.52 1.28
4334 4621 8.403606 AGTGATATAAACGCGCTTATATTACC 57.596 34.615 32.00 21.97 39.37 2.85
4335 4622 8.248945 AGTGATATAAACGCGCTTATATTACCT 58.751 33.333 32.00 23.91 39.37 3.08
4336 4623 8.529911 GTGATATAAACGCGCTTATATTACCTC 58.470 37.037 28.88 20.35 36.09 3.85
4337 4624 7.703621 TGATATAAACGCGCTTATATTACCTCC 59.296 37.037 26.81 17.19 35.52 4.30
4338 4625 2.342910 ACGCGCTTATATTACCTCCG 57.657 50.000 5.73 0.00 0.00 4.63
4339 4626 1.610522 ACGCGCTTATATTACCTCCGT 59.389 47.619 5.73 0.00 0.00 4.69
4340 4627 2.035066 ACGCGCTTATATTACCTCCGTT 59.965 45.455 5.73 0.00 0.00 4.44
4341 4628 2.660236 CGCGCTTATATTACCTCCGTTC 59.340 50.000 5.56 0.00 0.00 3.95
4342 4629 3.611057 CGCGCTTATATTACCTCCGTTCT 60.611 47.826 5.56 0.00 0.00 3.01
4343 4630 4.304939 GCGCTTATATTACCTCCGTTCTT 58.695 43.478 0.00 0.00 0.00 2.52
4344 4631 5.464168 GCGCTTATATTACCTCCGTTCTTA 58.536 41.667 0.00 0.00 0.00 2.10
4345 4632 5.922544 GCGCTTATATTACCTCCGTTCTTAA 59.077 40.000 0.00 0.00 0.00 1.85
4346 4633 6.421801 GCGCTTATATTACCTCCGTTCTTAAA 59.578 38.462 0.00 0.00 0.00 1.52
4347 4634 7.117379 GCGCTTATATTACCTCCGTTCTTAAAT 59.883 37.037 0.00 0.00 0.00 1.40
4348 4635 8.985805 CGCTTATATTACCTCCGTTCTTAAATT 58.014 33.333 0.00 0.00 0.00 1.82
4354 4641 7.662604 TTACCTCCGTTCTTAAATTCTTGAC 57.337 36.000 0.00 0.00 0.00 3.18
4355 4642 5.866207 ACCTCCGTTCTTAAATTCTTGACT 58.134 37.500 0.00 0.00 0.00 3.41
4356 4643 7.001099 ACCTCCGTTCTTAAATTCTTGACTA 57.999 36.000 0.00 0.00 0.00 2.59
4357 4644 7.097834 ACCTCCGTTCTTAAATTCTTGACTAG 58.902 38.462 0.00 0.00 0.00 2.57
4358 4645 7.039223 ACCTCCGTTCTTAAATTCTTGACTAGA 60.039 37.037 0.00 0.00 0.00 2.43
4359 4646 7.982354 CCTCCGTTCTTAAATTCTTGACTAGAT 59.018 37.037 0.00 0.00 31.54 1.98
4361 4648 9.798994 TCCGTTCTTAAATTCTTGACTAGATAC 57.201 33.333 0.00 0.00 31.54 2.24
4362 4649 9.582431 CCGTTCTTAAATTCTTGACTAGATACA 57.418 33.333 0.00 0.00 31.54 2.29
4370 4657 8.783999 AATTCTTGACTAGATACATTCGTACG 57.216 34.615 9.53 9.53 31.54 3.67
4371 4658 6.915544 TCTTGACTAGATACATTCGTACGT 57.084 37.500 16.05 0.00 0.00 3.57
4372 4659 8.424274 TTCTTGACTAGATACATTCGTACGTA 57.576 34.615 16.05 6.02 31.54 3.57
4373 4660 8.070007 TCTTGACTAGATACATTCGTACGTAG 57.930 38.462 16.05 9.22 0.00 3.51
4374 4661 7.922811 TCTTGACTAGATACATTCGTACGTAGA 59.077 37.037 16.05 3.18 0.00 2.59
4375 4662 8.599055 TTGACTAGATACATTCGTACGTAGAT 57.401 34.615 16.05 5.50 0.00 1.98
4376 4663 9.696917 TTGACTAGATACATTCGTACGTAGATA 57.303 33.333 16.05 4.97 0.00 1.98
4377 4664 9.696917 TGACTAGATACATTCGTACGTAGATAA 57.303 33.333 16.05 1.59 0.00 1.75
4385 4672 8.976986 ACATTCGTACGTAGATAAATATTCCC 57.023 34.615 16.05 0.00 0.00 3.97
4386 4673 8.800332 ACATTCGTACGTAGATAAATATTCCCT 58.200 33.333 16.05 0.00 0.00 4.20
4387 4674 9.286946 CATTCGTACGTAGATAAATATTCCCTC 57.713 37.037 16.05 0.00 0.00 4.30
4388 4675 7.383102 TCGTACGTAGATAAATATTCCCTCC 57.617 40.000 16.05 0.00 0.00 4.30
4389 4676 6.092670 TCGTACGTAGATAAATATTCCCTCCG 59.907 42.308 16.05 0.00 0.00 4.63
4390 4677 6.128172 CGTACGTAGATAAATATTCCCTCCGT 60.128 42.308 7.22 7.22 0.00 4.69
4391 4678 6.264841 ACGTAGATAAATATTCCCTCCGTC 57.735 41.667 0.00 0.00 0.00 4.79
4392 4679 5.184671 ACGTAGATAAATATTCCCTCCGTCC 59.815 44.000 0.00 0.00 0.00 4.79
4393 4680 4.803098 AGATAAATATTCCCTCCGTCCG 57.197 45.455 0.00 0.00 0.00 4.79
4394 4681 3.514309 AGATAAATATTCCCTCCGTCCGG 59.486 47.826 0.00 0.00 0.00 5.14
4395 4682 1.797320 AAATATTCCCTCCGTCCGGA 58.203 50.000 0.00 0.00 42.90 5.14
4396 4683 1.797320 AATATTCCCTCCGTCCGGAA 58.203 50.000 5.23 0.00 44.66 4.30
4397 4684 1.797320 ATATTCCCTCCGTCCGGAAA 58.203 50.000 5.23 1.92 44.66 3.13
4398 4685 1.797320 TATTCCCTCCGTCCGGAAAT 58.203 50.000 5.23 9.21 44.66 2.17
4399 4686 1.797320 ATTCCCTCCGTCCGGAAATA 58.203 50.000 5.23 0.00 44.66 1.40
4400 4687 0.826062 TTCCCTCCGTCCGGAAATAC 59.174 55.000 5.23 0.00 44.66 1.89
4401 4688 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4402 4689 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4403 4690 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4404 4691 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4405 4692 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4406 4693 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4407 4694 2.299582 TCCGTCCGGAAATACTTGTCAA 59.700 45.455 5.23 0.00 42.05 3.18
4408 4695 3.068560 CCGTCCGGAAATACTTGTCAAA 58.931 45.455 5.23 0.00 37.50 2.69
4409 4696 3.499157 CCGTCCGGAAATACTTGTCAAAA 59.501 43.478 5.23 0.00 37.50 2.44
4410 4697 4.023878 CCGTCCGGAAATACTTGTCAAAAA 60.024 41.667 5.23 0.00 37.50 1.94
4411 4698 5.144359 CGTCCGGAAATACTTGTCAAAAAG 58.856 41.667 5.23 0.00 0.00 2.27
4412 4699 5.049954 CGTCCGGAAATACTTGTCAAAAAGA 60.050 40.000 5.23 0.00 0.00 2.52
4413 4700 6.348213 CGTCCGGAAATACTTGTCAAAAAGAT 60.348 38.462 5.23 0.00 0.00 2.40
4414 4701 6.801862 GTCCGGAAATACTTGTCAAAAAGATG 59.198 38.462 5.23 0.00 0.00 2.90
4415 4702 6.072175 TCCGGAAATACTTGTCAAAAAGATGG 60.072 38.462 0.00 0.00 0.00 3.51
4416 4703 6.072175 CCGGAAATACTTGTCAAAAAGATGGA 60.072 38.462 0.00 0.00 0.00 3.41
4417 4704 7.362920 CCGGAAATACTTGTCAAAAAGATGGAT 60.363 37.037 0.00 0.00 0.00 3.41
4418 4705 8.673711 CGGAAATACTTGTCAAAAAGATGGATA 58.326 33.333 0.00 0.00 0.00 2.59
4425 4712 9.492973 ACTTGTCAAAAAGATGGATAAAAATGG 57.507 29.630 0.00 0.00 0.00 3.16
4426 4713 9.492973 CTTGTCAAAAAGATGGATAAAAATGGT 57.507 29.630 0.00 0.00 0.00 3.55
4427 4714 9.844257 TTGTCAAAAAGATGGATAAAAATGGTT 57.156 25.926 0.00 0.00 0.00 3.67
4428 4715 9.270640 TGTCAAAAAGATGGATAAAAATGGTTG 57.729 29.630 0.00 0.00 0.00 3.77
4429 4716 8.229811 GTCAAAAAGATGGATAAAAATGGTTGC 58.770 33.333 0.00 0.00 0.00 4.17
4430 4717 7.935755 TCAAAAAGATGGATAAAAATGGTTGCA 59.064 29.630 0.00 0.00 0.00 4.08
4431 4718 8.732531 CAAAAAGATGGATAAAAATGGTTGCAT 58.267 29.630 0.00 0.00 0.00 3.96
4432 4719 8.866970 AAAAGATGGATAAAAATGGTTGCATT 57.133 26.923 0.00 0.00 0.00 3.56
4433 4720 8.866970 AAAGATGGATAAAAATGGTTGCATTT 57.133 26.923 0.00 0.00 36.44 2.32
4434 4721 9.956640 AAAGATGGATAAAAATGGTTGCATTTA 57.043 25.926 0.00 0.00 34.06 1.40
4435 4722 9.603921 AAGATGGATAAAAATGGTTGCATTTAG 57.396 29.630 0.00 0.00 34.06 1.85
4436 4723 8.980596 AGATGGATAAAAATGGTTGCATTTAGA 58.019 29.630 0.00 0.00 34.06 2.10
4437 4724 9.598517 GATGGATAAAAATGGTTGCATTTAGAA 57.401 29.630 0.00 0.00 34.06 2.10
4438 4725 8.770438 TGGATAAAAATGGTTGCATTTAGAAC 57.230 30.769 0.00 0.00 34.06 3.01
4439 4726 8.592809 TGGATAAAAATGGTTGCATTTAGAACT 58.407 29.630 0.00 0.00 34.06 3.01
4467 4754 9.593565 AAATATGTCTAGATACATCCACTCTGA 57.406 33.333 0.00 0.00 40.52 3.27
4468 4755 6.892658 ATGTCTAGATACATCCACTCTGAC 57.107 41.667 0.00 0.00 35.08 3.51
4469 4756 5.755849 TGTCTAGATACATCCACTCTGACA 58.244 41.667 0.00 0.00 31.16 3.58
4470 4757 6.187682 TGTCTAGATACATCCACTCTGACAA 58.812 40.000 0.00 0.00 30.94 3.18
4471 4758 6.319911 TGTCTAGATACATCCACTCTGACAAG 59.680 42.308 0.00 0.00 30.94 3.16
4472 4759 6.320164 GTCTAGATACATCCACTCTGACAAGT 59.680 42.308 0.00 0.00 0.00 3.16
4473 4760 7.499563 GTCTAGATACATCCACTCTGACAAGTA 59.500 40.741 0.00 0.00 0.00 2.24
4474 4761 8.221251 TCTAGATACATCCACTCTGACAAGTAT 58.779 37.037 0.00 0.00 0.00 2.12
4475 4762 7.667575 AGATACATCCACTCTGACAAGTATT 57.332 36.000 0.00 0.00 0.00 1.89
4476 4763 8.083828 AGATACATCCACTCTGACAAGTATTT 57.916 34.615 0.00 0.00 0.00 1.40
4477 4764 8.543774 AGATACATCCACTCTGACAAGTATTTT 58.456 33.333 0.00 0.00 0.00 1.82
4478 4765 8.723942 ATACATCCACTCTGACAAGTATTTTC 57.276 34.615 0.00 0.00 0.00 2.29
4479 4766 5.639506 ACATCCACTCTGACAAGTATTTTCG 59.360 40.000 0.00 0.00 0.00 3.46
4480 4767 4.566004 TCCACTCTGACAAGTATTTTCGG 58.434 43.478 0.00 0.00 0.00 4.30
4481 4768 4.282449 TCCACTCTGACAAGTATTTTCGGA 59.718 41.667 0.00 0.00 0.00 4.55
4482 4769 5.046591 TCCACTCTGACAAGTATTTTCGGAT 60.047 40.000 0.00 0.00 0.00 4.18
4483 4770 5.063944 CCACTCTGACAAGTATTTTCGGATG 59.936 44.000 0.00 0.00 0.00 3.51
4484 4771 5.063944 CACTCTGACAAGTATTTTCGGATGG 59.936 44.000 0.00 0.00 0.00 3.51
4485 4772 5.046591 ACTCTGACAAGTATTTTCGGATGGA 60.047 40.000 0.00 0.00 0.00 3.41
4486 4773 5.419542 TCTGACAAGTATTTTCGGATGGAG 58.580 41.667 0.00 0.00 0.00 3.86
4487 4774 4.513442 TGACAAGTATTTTCGGATGGAGG 58.487 43.478 0.00 0.00 0.00 4.30
4488 4775 4.224147 TGACAAGTATTTTCGGATGGAGGA 59.776 41.667 0.00 0.00 0.00 3.71
4489 4776 5.174037 ACAAGTATTTTCGGATGGAGGAA 57.826 39.130 0.00 0.00 0.00 3.36
4490 4777 5.186198 ACAAGTATTTTCGGATGGAGGAAG 58.814 41.667 0.00 0.00 0.00 3.46
4491 4778 5.186198 CAAGTATTTTCGGATGGAGGAAGT 58.814 41.667 0.00 0.00 0.00 3.01
4492 4779 6.070424 ACAAGTATTTTCGGATGGAGGAAGTA 60.070 38.462 0.00 0.00 0.00 2.24
4493 4780 6.749036 AGTATTTTCGGATGGAGGAAGTAT 57.251 37.500 0.00 0.00 0.00 2.12
4494 4781 7.850935 AGTATTTTCGGATGGAGGAAGTATA 57.149 36.000 0.00 0.00 0.00 1.47
4495 4782 8.258850 AGTATTTTCGGATGGAGGAAGTATAA 57.741 34.615 0.00 0.00 0.00 0.98
4496 4783 8.711170 AGTATTTTCGGATGGAGGAAGTATAAA 58.289 33.333 0.00 0.00 0.00 1.40
4497 4784 9.333724 GTATTTTCGGATGGAGGAAGTATAAAA 57.666 33.333 0.00 0.00 0.00 1.52
4498 4785 7.619964 TTTTCGGATGGAGGAAGTATAAAAC 57.380 36.000 0.00 0.00 0.00 2.43
4499 4786 5.943349 TCGGATGGAGGAAGTATAAAACA 57.057 39.130 0.00 0.00 0.00 2.83
4500 4787 6.302535 TCGGATGGAGGAAGTATAAAACAA 57.697 37.500 0.00 0.00 0.00 2.83
4501 4788 6.346096 TCGGATGGAGGAAGTATAAAACAAG 58.654 40.000 0.00 0.00 0.00 3.16
4502 4789 6.155565 TCGGATGGAGGAAGTATAAAACAAGA 59.844 38.462 0.00 0.00 0.00 3.02
4503 4790 6.821665 CGGATGGAGGAAGTATAAAACAAGAA 59.178 38.462 0.00 0.00 0.00 2.52
4504 4791 7.499232 CGGATGGAGGAAGTATAAAACAAGAAT 59.501 37.037 0.00 0.00 0.00 2.40
4505 4792 9.190317 GGATGGAGGAAGTATAAAACAAGAATT 57.810 33.333 0.00 0.00 0.00 2.17
4519 4806 8.980143 AAAACAAGAATTTTGAGACGAAGAAA 57.020 26.923 0.00 0.00 30.56 2.52
4520 4807 8.620533 AAACAAGAATTTTGAGACGAAGAAAG 57.379 30.769 0.00 0.00 0.00 2.62
4521 4808 7.321745 ACAAGAATTTTGAGACGAAGAAAGT 57.678 32.000 0.00 0.00 0.00 2.66
4522 4809 8.433421 ACAAGAATTTTGAGACGAAGAAAGTA 57.567 30.769 0.00 0.00 0.00 2.24
4523 4810 9.057089 ACAAGAATTTTGAGACGAAGAAAGTAT 57.943 29.630 0.00 0.00 0.00 2.12
4524 4811 9.884465 CAAGAATTTTGAGACGAAGAAAGTATT 57.116 29.630 0.00 0.00 0.00 1.89
4560 4847 9.931210 GGGAGTAGTTTTAATATGAATTCAACG 57.069 33.333 13.09 0.00 0.00 4.10
4574 4861 7.906611 TGAATTCAACGATGTACTTTTTGTG 57.093 32.000 5.45 0.00 0.00 3.33
4575 4862 6.915300 TGAATTCAACGATGTACTTTTTGTGG 59.085 34.615 5.45 0.00 0.00 4.17
4576 4863 4.217754 TCAACGATGTACTTTTTGTGGC 57.782 40.909 0.00 0.00 0.00 5.01
4577 4864 3.628032 TCAACGATGTACTTTTTGTGGCA 59.372 39.130 0.00 0.00 0.00 4.92
4578 4865 4.096532 TCAACGATGTACTTTTTGTGGCAA 59.903 37.500 0.00 0.00 0.00 4.52
4579 4866 3.959943 ACGATGTACTTTTTGTGGCAAC 58.040 40.909 0.00 0.00 0.00 4.17
4580 4867 3.630312 ACGATGTACTTTTTGTGGCAACT 59.370 39.130 0.00 0.00 37.61 3.16
4581 4868 3.974401 CGATGTACTTTTTGTGGCAACTG 59.026 43.478 0.00 0.00 37.61 3.16
4582 4869 4.497340 CGATGTACTTTTTGTGGCAACTGT 60.497 41.667 0.00 0.00 37.61 3.55
4583 4870 4.792521 TGTACTTTTTGTGGCAACTGTT 57.207 36.364 0.00 0.00 37.61 3.16
4584 4871 5.899120 TGTACTTTTTGTGGCAACTGTTA 57.101 34.783 0.00 0.00 37.61 2.41
4585 4872 6.268825 TGTACTTTTTGTGGCAACTGTTAA 57.731 33.333 0.00 0.00 37.61 2.01
4586 4873 6.868622 TGTACTTTTTGTGGCAACTGTTAAT 58.131 32.000 0.00 0.00 37.61 1.40
4587 4874 7.324178 TGTACTTTTTGTGGCAACTGTTAATT 58.676 30.769 0.00 0.00 37.61 1.40
4588 4875 6.902224 ACTTTTTGTGGCAACTGTTAATTC 57.098 33.333 0.00 0.00 37.61 2.17
4589 4876 6.402222 ACTTTTTGTGGCAACTGTTAATTCA 58.598 32.000 0.00 0.00 37.61 2.57
4590 4877 6.876257 ACTTTTTGTGGCAACTGTTAATTCAA 59.124 30.769 0.00 0.00 37.61 2.69
4591 4878 7.552330 ACTTTTTGTGGCAACTGTTAATTCAAT 59.448 29.630 0.00 0.00 37.61 2.57
4592 4879 6.841443 TTTGTGGCAACTGTTAATTCAATG 57.159 33.333 0.00 0.00 37.61 2.82
4593 4880 4.880759 TGTGGCAACTGTTAATTCAATGG 58.119 39.130 0.00 0.00 37.61 3.16
4594 4881 4.343526 TGTGGCAACTGTTAATTCAATGGT 59.656 37.500 0.00 0.00 37.61 3.55
4595 4882 5.536538 TGTGGCAACTGTTAATTCAATGGTA 59.463 36.000 0.00 0.00 37.61 3.25
4596 4883 6.210385 TGTGGCAACTGTTAATTCAATGGTAT 59.790 34.615 0.00 0.00 37.61 2.73
4597 4884 7.394641 TGTGGCAACTGTTAATTCAATGGTATA 59.605 33.333 0.00 0.00 37.61 1.47
4598 4885 7.915397 GTGGCAACTGTTAATTCAATGGTATAG 59.085 37.037 0.00 0.00 37.61 1.31
4599 4886 7.613801 TGGCAACTGTTAATTCAATGGTATAGT 59.386 33.333 0.00 0.00 37.61 2.12
4600 4887 8.466798 GGCAACTGTTAATTCAATGGTATAGTT 58.533 33.333 0.00 0.00 0.00 2.24
4601 4888 9.503427 GCAACTGTTAATTCAATGGTATAGTTC 57.497 33.333 0.00 0.00 0.00 3.01
4606 4893 9.184523 TGTTAATTCAATGGTATAGTTCAAGGG 57.815 33.333 0.00 0.00 0.00 3.95
4607 4894 8.630037 GTTAATTCAATGGTATAGTTCAAGGGG 58.370 37.037 0.00 0.00 0.00 4.79
4608 4895 4.164843 TCAATGGTATAGTTCAAGGGGC 57.835 45.455 0.00 0.00 0.00 5.80
4609 4896 3.785887 TCAATGGTATAGTTCAAGGGGCT 59.214 43.478 0.00 0.00 0.00 5.19
4610 4897 4.137543 CAATGGTATAGTTCAAGGGGCTC 58.862 47.826 0.00 0.00 0.00 4.70
4611 4898 2.124411 TGGTATAGTTCAAGGGGCTCC 58.876 52.381 0.00 0.00 0.00 4.70
4613 4900 2.104963 GGTATAGTTCAAGGGGCTCCTG 59.895 54.545 5.46 0.00 44.07 3.86
4614 4901 0.548510 ATAGTTCAAGGGGCTCCTGC 59.451 55.000 5.46 0.00 44.07 4.85
4624 4911 4.303257 GCTCCTGCCTGGTGTTAC 57.697 61.111 0.00 0.00 37.07 2.50
4625 4912 1.741770 GCTCCTGCCTGGTGTTACG 60.742 63.158 0.00 0.00 37.07 3.18
4626 4913 1.671742 CTCCTGCCTGGTGTTACGT 59.328 57.895 0.00 0.00 37.07 3.57
4627 4914 0.670546 CTCCTGCCTGGTGTTACGTG 60.671 60.000 0.00 0.00 37.07 4.49
4628 4915 2.325082 CCTGCCTGGTGTTACGTGC 61.325 63.158 0.00 0.00 0.00 5.34
4629 4916 2.281208 TGCCTGGTGTTACGTGCC 60.281 61.111 0.00 0.00 0.00 5.01
4630 4917 3.053896 GCCTGGTGTTACGTGCCC 61.054 66.667 0.00 0.00 0.00 5.36
4631 4918 2.359478 CCTGGTGTTACGTGCCCC 60.359 66.667 0.00 0.00 0.00 5.80
4632 4919 2.747686 CTGGTGTTACGTGCCCCT 59.252 61.111 0.00 0.00 0.00 4.79
4633 4920 1.072505 CTGGTGTTACGTGCCCCTT 59.927 57.895 0.00 0.00 0.00 3.95
4634 4921 1.228003 TGGTGTTACGTGCCCCTTG 60.228 57.895 0.00 0.00 0.00 3.61
4635 4922 1.228033 GGTGTTACGTGCCCCTTGT 60.228 57.895 0.00 0.00 0.00 3.16
4636 4923 0.820482 GGTGTTACGTGCCCCTTGTT 60.820 55.000 0.00 0.00 0.00 2.83
4637 4924 0.589708 GTGTTACGTGCCCCTTGTTC 59.410 55.000 0.00 0.00 0.00 3.18
4638 4925 0.881159 TGTTACGTGCCCCTTGTTCG 60.881 55.000 0.00 0.00 0.00 3.95
4639 4926 0.881600 GTTACGTGCCCCTTGTTCGT 60.882 55.000 0.00 0.00 38.30 3.85
4640 4927 0.600782 TTACGTGCCCCTTGTTCGTC 60.601 55.000 0.00 0.00 36.24 4.20
4641 4928 1.466025 TACGTGCCCCTTGTTCGTCT 61.466 55.000 0.00 0.00 36.24 4.18
4642 4929 1.597027 CGTGCCCCTTGTTCGTCTT 60.597 57.895 0.00 0.00 0.00 3.01
4643 4930 1.164041 CGTGCCCCTTGTTCGTCTTT 61.164 55.000 0.00 0.00 0.00 2.52
4644 4931 1.029681 GTGCCCCTTGTTCGTCTTTT 58.970 50.000 0.00 0.00 0.00 2.27
4645 4932 1.407618 GTGCCCCTTGTTCGTCTTTTT 59.592 47.619 0.00 0.00 0.00 1.94
4646 4933 1.679153 TGCCCCTTGTTCGTCTTTTTC 59.321 47.619 0.00 0.00 0.00 2.29
4647 4934 1.000607 GCCCCTTGTTCGTCTTTTTCC 60.001 52.381 0.00 0.00 0.00 3.13
4648 4935 2.583143 CCCCTTGTTCGTCTTTTTCCT 58.417 47.619 0.00 0.00 0.00 3.36
4649 4936 2.293399 CCCCTTGTTCGTCTTTTTCCTG 59.707 50.000 0.00 0.00 0.00 3.86
4650 4937 3.211045 CCCTTGTTCGTCTTTTTCCTGA 58.789 45.455 0.00 0.00 0.00 3.86
4651 4938 3.251004 CCCTTGTTCGTCTTTTTCCTGAG 59.749 47.826 0.00 0.00 0.00 3.35
4652 4939 3.251004 CCTTGTTCGTCTTTTTCCTGAGG 59.749 47.826 0.00 0.00 0.00 3.86
4653 4940 3.830744 TGTTCGTCTTTTTCCTGAGGA 57.169 42.857 0.00 0.00 0.00 3.71
4654 4941 4.145365 TGTTCGTCTTTTTCCTGAGGAA 57.855 40.909 10.46 10.46 40.27 3.36
4655 4942 4.127171 TGTTCGTCTTTTTCCTGAGGAAG 58.873 43.478 14.40 3.01 43.06 3.46
4656 4943 4.141801 TGTTCGTCTTTTTCCTGAGGAAGA 60.142 41.667 14.40 7.25 43.06 2.87
4657 4944 3.991367 TCGTCTTTTTCCTGAGGAAGAC 58.009 45.455 17.84 17.84 43.06 3.01
4658 4945 3.641906 TCGTCTTTTTCCTGAGGAAGACT 59.358 43.478 22.63 0.00 43.06 3.24
4659 4946 4.101119 TCGTCTTTTTCCTGAGGAAGACTT 59.899 41.667 22.63 0.00 43.06 3.01
4660 4947 4.212214 CGTCTTTTTCCTGAGGAAGACTTG 59.788 45.833 22.63 9.94 43.06 3.16
4661 4948 5.126779 GTCTTTTTCCTGAGGAAGACTTGT 58.873 41.667 19.67 0.00 43.06 3.16
4662 4949 6.289064 GTCTTTTTCCTGAGGAAGACTTGTA 58.711 40.000 19.67 0.60 43.06 2.41
4663 4950 6.937465 GTCTTTTTCCTGAGGAAGACTTGTAT 59.063 38.462 19.67 0.00 43.06 2.29
4664 4951 8.095169 GTCTTTTTCCTGAGGAAGACTTGTATA 58.905 37.037 19.67 0.00 43.06 1.47
4665 4952 8.314751 TCTTTTTCCTGAGGAAGACTTGTATAG 58.685 37.037 14.40 2.83 43.06 1.31
4666 4953 6.546428 TTTCCTGAGGAAGACTTGTATAGG 57.454 41.667 14.40 0.00 43.06 2.57
4667 4954 4.547671 TCCTGAGGAAGACTTGTATAGGG 58.452 47.826 0.00 0.00 0.00 3.53
4668 4955 4.016479 TCCTGAGGAAGACTTGTATAGGGT 60.016 45.833 0.00 0.00 0.00 4.34
4669 4956 4.342665 CCTGAGGAAGACTTGTATAGGGTC 59.657 50.000 0.00 0.00 0.00 4.46
4670 4957 4.287552 TGAGGAAGACTTGTATAGGGTCC 58.712 47.826 0.00 0.00 0.00 4.46
4671 4958 4.264668 TGAGGAAGACTTGTATAGGGTCCA 60.265 45.833 0.00 0.00 0.00 4.02
4672 4959 4.897051 AGGAAGACTTGTATAGGGTCCAT 58.103 43.478 0.00 0.00 0.00 3.41
4673 4960 4.902448 AGGAAGACTTGTATAGGGTCCATC 59.098 45.833 0.00 0.00 0.00 3.51
4674 4961 4.040584 GGAAGACTTGTATAGGGTCCATCC 59.959 50.000 0.00 0.00 33.00 3.51
4675 4962 4.561254 AGACTTGTATAGGGTCCATCCT 57.439 45.455 0.00 0.00 40.79 3.24
4676 4963 4.897051 AGACTTGTATAGGGTCCATCCTT 58.103 43.478 0.00 0.00 38.30 3.36
4677 4964 6.039415 AGACTTGTATAGGGTCCATCCTTA 57.961 41.667 0.00 0.00 38.30 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.314635 CGCTAGTACAGGAAATCGGTAGT 59.685 47.826 0.00 0.00 34.77 2.73
24 25 6.125029 TCCTACTAACGCTAGTACAGGAAAT 58.875 40.000 12.95 0.00 38.87 2.17
86 96 6.391227 TTTTCAAAGAAACCTCTAGCCAAG 57.609 37.500 0.00 0.00 0.00 3.61
111 121 1.228552 GACCAAAGGGGCTGCTGAA 60.229 57.895 0.00 0.00 40.08 3.02
113 123 2.677875 GGACCAAAGGGGCTGCTG 60.678 66.667 0.00 0.00 44.19 4.41
114 124 1.214305 TATGGACCAAAGGGGCTGCT 61.214 55.000 0.00 0.00 44.19 4.24
115 125 0.324275 TTATGGACCAAAGGGGCTGC 60.324 55.000 0.00 0.00 44.19 5.25
281 291 1.326328 CGATCCTGGATCAGCTCAGA 58.674 55.000 30.46 0.00 38.84 3.27
304 314 2.361119 GACGGTGCACCATCTCATACTA 59.639 50.000 34.16 0.00 35.14 1.82
311 325 2.927856 TGGGACGGTGCACCATCT 60.928 61.111 34.16 16.68 35.14 2.90
350 364 3.815401 ACAGAGGCAACACAAACTGATAC 59.185 43.478 0.00 0.00 41.41 2.24
377 391 6.604396 ACAAGGCAGATCAATCAAATCATACA 59.396 34.615 0.00 0.00 0.00 2.29
446 460 4.886579 ACAGCCATTTTCTGTTTTCATCC 58.113 39.130 0.00 0.00 41.61 3.51
487 501 9.017669 GCAAACAGCTAAAATTCTCATATTCTG 57.982 33.333 0.00 0.00 41.15 3.02
519 533 2.926200 CAGCCTACAGAGATGTCGTTTG 59.074 50.000 0.00 0.00 0.00 2.93
520 534 2.563179 ACAGCCTACAGAGATGTCGTTT 59.437 45.455 0.00 0.00 0.00 3.60
523 537 2.949451 AACAGCCTACAGAGATGTCG 57.051 50.000 0.00 0.00 0.00 4.35
591 686 4.217550 ACACATTGGATTTAAGACAACGGG 59.782 41.667 0.00 0.00 0.00 5.28
632 727 3.615224 TTTCATACAGAACCCGGGTAC 57.385 47.619 30.52 5.57 35.56 3.34
678 773 5.450818 AATGCCCTATTAAGACACCTCAA 57.549 39.130 0.00 0.00 0.00 3.02
708 803 6.696441 TGCAACATGTATGATGATTTGCTA 57.304 33.333 12.93 0.20 32.98 3.49
1367 1472 5.993748 TGAGTTCCACGGCATCATATATA 57.006 39.130 0.00 0.00 0.00 0.86
1475 1581 8.272190 GGCTTCTTGCTTGGTACAATTCTCTC 62.272 46.154 0.00 0.00 40.84 3.20
1476 1582 6.550870 GGCTTCTTGCTTGGTACAATTCTCT 61.551 44.000 0.00 0.00 40.84 3.10
1478 1584 3.507622 GGCTTCTTGCTTGGTACAATTCT 59.492 43.478 0.00 0.00 40.84 2.40
1479 1585 3.367395 GGGCTTCTTGCTTGGTACAATTC 60.367 47.826 0.00 0.00 40.84 2.17
1480 1586 2.562738 GGGCTTCTTGCTTGGTACAATT 59.437 45.455 0.00 0.00 40.84 2.32
1481 1587 2.171003 GGGCTTCTTGCTTGGTACAAT 58.829 47.619 0.00 0.00 40.84 2.71
1482 1588 1.144913 AGGGCTTCTTGCTTGGTACAA 59.855 47.619 0.00 0.00 40.84 2.41
1618 1810 8.302965 ACAACCTAAGTACATTCTTACGTTTC 57.697 34.615 0.00 0.00 31.80 2.78
1622 1814 8.976986 AAGTACAACCTAAGTACATTCTTACG 57.023 34.615 6.30 0.00 43.24 3.18
1638 1830 7.201530 GCACATAACAGACAGATAAGTACAACC 60.202 40.741 0.00 0.00 0.00 3.77
1668 1860 5.539582 TTACTGTAGCAAATAAAGGTGCG 57.460 39.130 0.00 0.00 45.62 5.34
1737 1929 2.330440 TTCAAGTGTCAGCAGAAGCA 57.670 45.000 0.00 0.00 45.49 3.91
1845 2037 5.825679 ACTGTTAAACAAGATGTACCTGCAA 59.174 36.000 0.00 0.00 0.00 4.08
1847 2039 5.689819 CACTGTTAAACAAGATGTACCTGC 58.310 41.667 0.00 0.00 0.00 4.85
1857 2049 3.705604 CCAAGTGGCACTGTTAAACAAG 58.294 45.455 22.83 3.02 0.00 3.16
1922 2116 9.162764 GCCTGTATTTCTGAAAACAGTAATAGA 57.837 33.333 25.73 0.00 38.10 1.98
1965 2159 2.762887 CCTACCATCAGCTGAAGAGTCA 59.237 50.000 22.50 3.31 0.00 3.41
2094 2288 2.549778 GGATCCATCAAGTCCTGCTAGC 60.550 54.545 8.10 8.10 0.00 3.42
2152 2351 7.360101 GCCAGTCACAGTTTACATAAGTTACTG 60.360 40.741 9.95 9.95 41.31 2.74
2256 2455 9.127277 TGCAAACTAAAGAGTGGTAAAATAAGT 57.873 29.630 0.00 0.00 35.52 2.24
2286 2486 2.162319 TAGCATGTGTTTGTCGAGCA 57.838 45.000 0.00 0.00 0.00 4.26
2431 2636 6.806388 ATTCAAGGCCAAAAATTGATGAAC 57.194 33.333 5.01 0.00 33.26 3.18
2456 2661 3.270877 GCAGTATTTGTGTACCTGAGGG 58.729 50.000 2.38 0.00 38.88 4.30
2458 2663 2.348666 GCGCAGTATTTGTGTACCTGAG 59.651 50.000 0.30 0.00 39.53 3.35
2473 2678 1.298339 GTTTTCGTTGCTGCGCAGT 60.298 52.632 35.80 0.00 40.61 4.40
2476 2681 2.626151 CGTGTTTTCGTTGCTGCGC 61.626 57.895 0.00 0.00 0.00 6.09
2485 2690 6.089920 TGAAGCTATATCAACGTGTTTTCG 57.910 37.500 0.00 0.00 0.00 3.46
2512 2717 8.945195 AGGAAGATAAAAATGCATATGGATCA 57.055 30.769 10.42 0.00 0.00 2.92
2556 2761 5.520649 GGATAAACCAACAAAAAGCAACGAA 59.479 36.000 0.00 0.00 38.79 3.85
2708 2913 0.822164 ACGATCAAACGTCCCTAGGG 59.178 55.000 23.22 23.22 43.02 3.53
2835 3040 1.202359 GCGTTTGGACTGCTTTTGGAA 60.202 47.619 0.00 0.00 0.00 3.53
2934 3141 5.373222 TGTTTTTGCCTCTAGCTGACTAAA 58.627 37.500 0.00 0.00 44.23 1.85
3337 3544 1.586564 GGGAACTGATCGCTCGACG 60.587 63.158 0.00 0.00 45.62 5.12
3380 3587 0.037303 CAGATGTGGGTGCAGGAGTT 59.963 55.000 0.00 0.00 0.00 3.01
3392 3599 4.273724 CCTTGAGATGCAGATTCAGATGTG 59.726 45.833 0.00 0.00 0.00 3.21
3418 3625 3.879295 TCCACTGTCTCTTTTGAAAGCTG 59.121 43.478 0.00 0.00 35.99 4.24
3419 3626 4.156455 TCCACTGTCTCTTTTGAAAGCT 57.844 40.909 0.00 0.00 35.99 3.74
3572 3779 2.517166 GCCTCCGGGAATTCAGCC 60.517 66.667 7.93 0.00 33.58 4.85
3635 3842 1.503542 CGCACATTGCTGGAACTCC 59.496 57.895 0.00 0.00 42.25 3.85
3957 4164 8.543293 ACCATCAATCATCCTCATAACAAATT 57.457 30.769 0.00 0.00 0.00 1.82
3971 4184 7.275183 TCGTCTTATTTCTGACCATCAATCAT 58.725 34.615 0.00 0.00 0.00 2.45
3981 4194 6.531948 ACACTGCTAATCGTCTTATTTCTGAC 59.468 38.462 0.00 0.00 0.00 3.51
3989 4202 6.649141 ACATGAAAACACTGCTAATCGTCTTA 59.351 34.615 0.00 0.00 0.00 2.10
3992 4205 5.107104 TGACATGAAAACACTGCTAATCGTC 60.107 40.000 0.00 0.00 0.00 4.20
3993 4206 4.754618 TGACATGAAAACACTGCTAATCGT 59.245 37.500 0.00 0.00 0.00 3.73
3996 4209 5.865552 GCATTGACATGAAAACACTGCTAAT 59.134 36.000 0.00 0.00 37.28 1.73
4000 4213 2.733026 GGCATTGACATGAAAACACTGC 59.267 45.455 0.00 9.64 38.71 4.40
4017 4230 2.694616 ACACACTTAAAAGGGGGCAT 57.305 45.000 0.00 0.00 35.84 4.40
4023 4237 4.769215 GTGCGAAGTACACACTTAAAAGG 58.231 43.478 0.00 0.00 45.18 3.11
4064 4278 9.120538 GATTTTGCCTAGACTTTTGATGGTATA 57.879 33.333 0.00 0.00 0.00 1.47
4083 4297 6.919721 TGTAGATGTTTACTTGGGATTTTGC 58.080 36.000 0.00 0.00 0.00 3.68
4131 4398 4.523083 AGGAGCACACAAGTTTCAAGTTA 58.477 39.130 0.00 0.00 0.00 2.24
4160 4447 3.689649 GCAAATTAGGCCCTATATGTCCG 59.310 47.826 0.00 0.00 0.00 4.79
4182 4469 6.583427 TGACGATCAAAGCAAATCTCAAAATG 59.417 34.615 0.00 0.00 0.00 2.32
4252 4539 8.810041 TCTTTACAAAGGGGTACTAGTTTCTAG 58.190 37.037 0.00 2.71 36.67 2.43
4282 4569 8.589338 ACTTCAGTGATCTAAACACACTCTTAT 58.411 33.333 0.00 0.00 41.93 1.73
4283 4570 7.952671 ACTTCAGTGATCTAAACACACTCTTA 58.047 34.615 0.00 0.00 41.93 2.10
4284 4571 6.821388 ACTTCAGTGATCTAAACACACTCTT 58.179 36.000 0.00 0.00 41.93 2.85
4285 4572 6.412362 ACTTCAGTGATCTAAACACACTCT 57.588 37.500 0.00 0.00 41.93 3.24
4286 4573 7.371936 ACTACTTCAGTGATCTAAACACACTC 58.628 38.462 0.00 0.00 41.93 3.51
4287 4574 7.291411 ACTACTTCAGTGATCTAAACACACT 57.709 36.000 0.00 0.00 44.15 3.55
4301 4588 4.738740 GCGCGTTTATATCACTACTTCAGT 59.261 41.667 8.43 0.00 38.32 3.41
4302 4589 4.976731 AGCGCGTTTATATCACTACTTCAG 59.023 41.667 8.43 0.00 0.00 3.02
4303 4590 4.928601 AGCGCGTTTATATCACTACTTCA 58.071 39.130 8.43 0.00 0.00 3.02
4304 4591 5.885020 AAGCGCGTTTATATCACTACTTC 57.115 39.130 6.35 0.00 0.00 3.01
4305 4592 9.635520 AATATAAGCGCGTTTATATCACTACTT 57.364 29.630 33.83 21.47 35.95 2.24
4308 4595 9.507280 GGTAATATAAGCGCGTTTATATCACTA 57.493 33.333 33.83 24.46 35.95 2.74
4309 4596 8.248945 AGGTAATATAAGCGCGTTTATATCACT 58.751 33.333 33.83 28.47 35.95 3.41
4310 4597 8.403606 AGGTAATATAAGCGCGTTTATATCAC 57.596 34.615 33.83 30.75 35.95 3.06
4311 4598 7.703621 GGAGGTAATATAAGCGCGTTTATATCA 59.296 37.037 33.83 24.45 35.95 2.15
4312 4599 7.096722 CGGAGGTAATATAAGCGCGTTTATATC 60.097 40.741 33.83 25.72 35.95 1.63
4313 4600 6.694411 CGGAGGTAATATAAGCGCGTTTATAT 59.306 38.462 30.69 30.69 37.66 0.86
4314 4601 6.029607 CGGAGGTAATATAAGCGCGTTTATA 58.970 40.000 29.40 29.40 31.91 0.98
4315 4602 4.860907 CGGAGGTAATATAAGCGCGTTTAT 59.139 41.667 27.39 27.39 0.00 1.40
4316 4603 4.229096 CGGAGGTAATATAAGCGCGTTTA 58.771 43.478 17.79 17.79 0.00 2.01
4317 4604 3.054878 CGGAGGTAATATAAGCGCGTTT 58.945 45.455 13.97 13.97 0.00 3.60
4318 4605 2.035066 ACGGAGGTAATATAAGCGCGTT 59.965 45.455 8.43 0.00 0.00 4.84
4319 4606 1.610522 ACGGAGGTAATATAAGCGCGT 59.389 47.619 8.43 0.00 0.00 6.01
4320 4607 2.342910 ACGGAGGTAATATAAGCGCG 57.657 50.000 0.00 0.00 0.00 6.86
4321 4608 3.910648 AGAACGGAGGTAATATAAGCGC 58.089 45.455 0.00 0.00 0.00 5.92
4322 4609 7.935338 TTTAAGAACGGAGGTAATATAAGCG 57.065 36.000 0.00 0.00 0.00 4.68
4328 4615 9.374838 GTCAAGAATTTAAGAACGGAGGTAATA 57.625 33.333 0.00 0.00 0.00 0.98
4329 4616 8.101419 AGTCAAGAATTTAAGAACGGAGGTAAT 58.899 33.333 0.00 0.00 0.00 1.89
4330 4617 7.447594 AGTCAAGAATTTAAGAACGGAGGTAA 58.552 34.615 0.00 0.00 0.00 2.85
4331 4618 7.001099 AGTCAAGAATTTAAGAACGGAGGTA 57.999 36.000 0.00 0.00 0.00 3.08
4332 4619 5.866207 AGTCAAGAATTTAAGAACGGAGGT 58.134 37.500 0.00 0.00 0.00 3.85
4333 4620 7.321153 TCTAGTCAAGAATTTAAGAACGGAGG 58.679 38.462 0.00 0.00 0.00 4.30
4334 4621 8.934507 ATCTAGTCAAGAATTTAAGAACGGAG 57.065 34.615 0.00 0.00 37.89 4.63
4335 4622 9.798994 GTATCTAGTCAAGAATTTAAGAACGGA 57.201 33.333 0.00 0.00 37.89 4.69
4336 4623 9.582431 TGTATCTAGTCAAGAATTTAAGAACGG 57.418 33.333 0.00 0.00 37.89 4.44
4344 4631 9.234384 CGTACGAATGTATCTAGTCAAGAATTT 57.766 33.333 10.44 0.00 37.89 1.82
4345 4632 8.404000 ACGTACGAATGTATCTAGTCAAGAATT 58.596 33.333 24.41 0.00 37.89 2.17
4346 4633 7.928103 ACGTACGAATGTATCTAGTCAAGAAT 58.072 34.615 24.41 0.00 37.89 2.40
4347 4634 7.312657 ACGTACGAATGTATCTAGTCAAGAA 57.687 36.000 24.41 0.00 37.89 2.52
4348 4635 6.915544 ACGTACGAATGTATCTAGTCAAGA 57.084 37.500 24.41 0.00 39.02 3.02
4349 4636 8.070007 TCTACGTACGAATGTATCTAGTCAAG 57.930 38.462 24.41 0.00 32.11 3.02
4350 4637 8.599055 ATCTACGTACGAATGTATCTAGTCAA 57.401 34.615 24.41 0.00 32.11 3.18
4351 4638 9.696917 TTATCTACGTACGAATGTATCTAGTCA 57.303 33.333 24.41 0.70 32.11 3.41
4360 4647 8.800332 AGGGAATATTTATCTACGTACGAATGT 58.200 33.333 24.41 5.42 0.00 2.71
4361 4648 9.286946 GAGGGAATATTTATCTACGTACGAATG 57.713 37.037 24.41 11.13 0.00 2.67
4362 4649 8.465201 GGAGGGAATATTTATCTACGTACGAAT 58.535 37.037 24.41 12.26 0.00 3.34
4363 4650 7.361201 CGGAGGGAATATTTATCTACGTACGAA 60.361 40.741 24.41 4.60 0.00 3.85
4364 4651 6.092670 CGGAGGGAATATTTATCTACGTACGA 59.907 42.308 24.41 4.69 0.00 3.43
4365 4652 6.128172 ACGGAGGGAATATTTATCTACGTACG 60.128 42.308 15.01 15.01 42.35 3.67
4366 4653 7.150783 ACGGAGGGAATATTTATCTACGTAC 57.849 40.000 16.82 0.00 42.35 3.67
4367 4654 6.375455 GGACGGAGGGAATATTTATCTACGTA 59.625 42.308 17.74 0.00 43.90 3.57
4368 4655 5.184671 GGACGGAGGGAATATTTATCTACGT 59.815 44.000 17.75 17.75 46.13 3.57
4369 4656 5.648572 GGACGGAGGGAATATTTATCTACG 58.351 45.833 13.26 13.26 37.75 3.51
4370 4657 5.393896 CCGGACGGAGGGAATATTTATCTAC 60.394 48.000 4.40 0.00 37.50 2.59
4371 4658 4.708421 CCGGACGGAGGGAATATTTATCTA 59.292 45.833 4.40 0.00 37.50 1.98
4372 4659 3.514309 CCGGACGGAGGGAATATTTATCT 59.486 47.826 4.40 0.00 37.50 1.98
4373 4660 3.512724 TCCGGACGGAGGGAATATTTATC 59.487 47.826 9.76 0.00 39.76 1.75
4374 4661 3.513517 TCCGGACGGAGGGAATATTTAT 58.486 45.455 9.76 0.00 39.76 1.40
4375 4662 2.961510 TCCGGACGGAGGGAATATTTA 58.038 47.619 9.76 0.00 39.76 1.40
4376 4663 1.797320 TCCGGACGGAGGGAATATTT 58.203 50.000 9.76 0.00 39.76 1.40
4377 4664 1.797320 TTCCGGACGGAGGGAATATT 58.203 50.000 13.64 0.00 46.06 1.28
4378 4665 1.797320 TTTCCGGACGGAGGGAATAT 58.203 50.000 13.64 0.00 46.06 1.28
4379 4666 1.797320 ATTTCCGGACGGAGGGAATA 58.203 50.000 13.64 0.00 46.06 1.75
4380 4667 1.415289 GTATTTCCGGACGGAGGGAAT 59.585 52.381 13.64 12.81 46.06 3.01
4381 4668 0.826062 GTATTTCCGGACGGAGGGAA 59.174 55.000 13.64 6.20 46.06 3.97
4382 4669 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4383 4670 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4384 4671 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4385 4672 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4386 4673 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4387 4674 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4388 4675 4.735662 TTTTGACAAGTATTTCCGGACG 57.264 40.909 1.83 0.00 0.00 4.79
4389 4676 6.308371 TCTTTTTGACAAGTATTTCCGGAC 57.692 37.500 1.83 0.00 0.00 4.79
4390 4677 6.072175 CCATCTTTTTGACAAGTATTTCCGGA 60.072 38.462 0.00 0.00 0.00 5.14
4391 4678 6.072175 TCCATCTTTTTGACAAGTATTTCCGG 60.072 38.462 0.00 0.00 0.00 5.14
4392 4679 6.908825 TCCATCTTTTTGACAAGTATTTCCG 58.091 36.000 0.00 0.00 0.00 4.30
4399 4686 9.492973 CCATTTTTATCCATCTTTTTGACAAGT 57.507 29.630 0.00 0.00 0.00 3.16
4400 4687 9.492973 ACCATTTTTATCCATCTTTTTGACAAG 57.507 29.630 0.00 0.00 0.00 3.16
4401 4688 9.844257 AACCATTTTTATCCATCTTTTTGACAA 57.156 25.926 0.00 0.00 0.00 3.18
4402 4689 9.270640 CAACCATTTTTATCCATCTTTTTGACA 57.729 29.630 0.00 0.00 0.00 3.58
4403 4690 8.229811 GCAACCATTTTTATCCATCTTTTTGAC 58.770 33.333 0.00 0.00 0.00 3.18
4404 4691 7.935755 TGCAACCATTTTTATCCATCTTTTTGA 59.064 29.630 0.00 0.00 0.00 2.69
4405 4692 8.097078 TGCAACCATTTTTATCCATCTTTTTG 57.903 30.769 0.00 0.00 0.00 2.44
4406 4693 8.866970 ATGCAACCATTTTTATCCATCTTTTT 57.133 26.923 0.00 0.00 0.00 1.94
4407 4694 8.866970 AATGCAACCATTTTTATCCATCTTTT 57.133 26.923 0.00 0.00 38.49 2.27
4408 4695 8.866970 AAATGCAACCATTTTTATCCATCTTT 57.133 26.923 0.00 0.00 46.66 2.52
4409 4696 9.603921 CTAAATGCAACCATTTTTATCCATCTT 57.396 29.630 6.93 0.00 46.66 2.40
4410 4697 8.980596 TCTAAATGCAACCATTTTTATCCATCT 58.019 29.630 6.93 0.00 46.66 2.90
4411 4698 9.598517 TTCTAAATGCAACCATTTTTATCCATC 57.401 29.630 6.93 0.00 46.66 3.51
4412 4699 9.382275 GTTCTAAATGCAACCATTTTTATCCAT 57.618 29.630 6.93 0.00 46.66 3.41
4413 4700 8.592809 AGTTCTAAATGCAACCATTTTTATCCA 58.407 29.630 6.93 0.00 46.66 3.41
4441 4728 9.593565 TCAGAGTGGATGTATCTAGACATATTT 57.406 33.333 0.00 0.00 40.18 1.40
4442 4729 9.019656 GTCAGAGTGGATGTATCTAGACATATT 57.980 37.037 0.00 0.00 40.18 1.28
4443 4730 8.166726 TGTCAGAGTGGATGTATCTAGACATAT 58.833 37.037 0.00 0.00 40.18 1.78
4444 4731 7.518188 TGTCAGAGTGGATGTATCTAGACATA 58.482 38.462 0.00 0.00 40.18 2.29
4445 4732 6.368805 TGTCAGAGTGGATGTATCTAGACAT 58.631 40.000 0.00 0.00 42.82 3.06
4446 4733 5.755849 TGTCAGAGTGGATGTATCTAGACA 58.244 41.667 0.00 0.00 33.14 3.41
4447 4734 6.320164 ACTTGTCAGAGTGGATGTATCTAGAC 59.680 42.308 0.00 0.00 0.00 2.59
4448 4735 6.427441 ACTTGTCAGAGTGGATGTATCTAGA 58.573 40.000 0.00 0.00 0.00 2.43
4449 4736 6.707440 ACTTGTCAGAGTGGATGTATCTAG 57.293 41.667 0.00 0.00 0.00 2.43
4450 4737 8.768501 AATACTTGTCAGAGTGGATGTATCTA 57.231 34.615 0.00 0.00 0.00 1.98
4451 4738 7.667575 AATACTTGTCAGAGTGGATGTATCT 57.332 36.000 0.00 0.00 0.00 1.98
4452 4739 8.723942 AAAATACTTGTCAGAGTGGATGTATC 57.276 34.615 0.00 0.00 0.00 2.24
4453 4740 7.492669 CGAAAATACTTGTCAGAGTGGATGTAT 59.507 37.037 0.00 0.00 0.00 2.29
4454 4741 6.811665 CGAAAATACTTGTCAGAGTGGATGTA 59.188 38.462 0.00 0.00 0.00 2.29
4455 4742 5.639506 CGAAAATACTTGTCAGAGTGGATGT 59.360 40.000 0.00 0.00 0.00 3.06
4456 4743 5.063944 CCGAAAATACTTGTCAGAGTGGATG 59.936 44.000 0.00 0.00 0.00 3.51
4457 4744 5.046591 TCCGAAAATACTTGTCAGAGTGGAT 60.047 40.000 0.00 0.00 0.00 3.41
4458 4745 4.282449 TCCGAAAATACTTGTCAGAGTGGA 59.718 41.667 0.00 0.00 0.00 4.02
4459 4746 4.566004 TCCGAAAATACTTGTCAGAGTGG 58.434 43.478 0.00 0.00 0.00 4.00
4460 4747 5.063944 CCATCCGAAAATACTTGTCAGAGTG 59.936 44.000 0.00 0.00 0.00 3.51
4461 4748 5.046591 TCCATCCGAAAATACTTGTCAGAGT 60.047 40.000 0.00 0.00 0.00 3.24
4462 4749 5.419542 TCCATCCGAAAATACTTGTCAGAG 58.580 41.667 0.00 0.00 0.00 3.35
4463 4750 5.414789 TCCATCCGAAAATACTTGTCAGA 57.585 39.130 0.00 0.00 0.00 3.27
4464 4751 4.572389 CCTCCATCCGAAAATACTTGTCAG 59.428 45.833 0.00 0.00 0.00 3.51
4465 4752 4.224147 TCCTCCATCCGAAAATACTTGTCA 59.776 41.667 0.00 0.00 0.00 3.58
4466 4753 4.766375 TCCTCCATCCGAAAATACTTGTC 58.234 43.478 0.00 0.00 0.00 3.18
4467 4754 4.837093 TCCTCCATCCGAAAATACTTGT 57.163 40.909 0.00 0.00 0.00 3.16
4468 4755 5.186198 ACTTCCTCCATCCGAAAATACTTG 58.814 41.667 0.00 0.00 0.00 3.16
4469 4756 5.437191 ACTTCCTCCATCCGAAAATACTT 57.563 39.130 0.00 0.00 0.00 2.24
4470 4757 6.749036 ATACTTCCTCCATCCGAAAATACT 57.251 37.500 0.00 0.00 0.00 2.12
4471 4758 8.897872 TTTATACTTCCTCCATCCGAAAATAC 57.102 34.615 0.00 0.00 0.00 1.89
4472 4759 9.333724 GTTTTATACTTCCTCCATCCGAAAATA 57.666 33.333 0.00 0.00 0.00 1.40
4473 4760 7.832187 TGTTTTATACTTCCTCCATCCGAAAAT 59.168 33.333 0.00 0.00 0.00 1.82
4474 4761 7.169591 TGTTTTATACTTCCTCCATCCGAAAA 58.830 34.615 0.00 0.00 0.00 2.29
4475 4762 6.713276 TGTTTTATACTTCCTCCATCCGAAA 58.287 36.000 0.00 0.00 0.00 3.46
4476 4763 6.302535 TGTTTTATACTTCCTCCATCCGAA 57.697 37.500 0.00 0.00 0.00 4.30
4477 4764 5.943349 TGTTTTATACTTCCTCCATCCGA 57.057 39.130 0.00 0.00 0.00 4.55
4478 4765 6.346096 TCTTGTTTTATACTTCCTCCATCCG 58.654 40.000 0.00 0.00 0.00 4.18
4479 4766 8.753497 ATTCTTGTTTTATACTTCCTCCATCC 57.247 34.615 0.00 0.00 0.00 3.51
4494 4781 8.980143 TTTCTTCGTCTCAAAATTCTTGTTTT 57.020 26.923 0.00 0.00 0.00 2.43
4495 4782 8.244113 ACTTTCTTCGTCTCAAAATTCTTGTTT 58.756 29.630 0.00 0.00 0.00 2.83
4496 4783 7.762382 ACTTTCTTCGTCTCAAAATTCTTGTT 58.238 30.769 0.00 0.00 0.00 2.83
4497 4784 7.321745 ACTTTCTTCGTCTCAAAATTCTTGT 57.678 32.000 0.00 0.00 0.00 3.16
4498 4785 9.884465 AATACTTTCTTCGTCTCAAAATTCTTG 57.116 29.630 0.00 0.00 0.00 3.02
4534 4821 9.931210 CGTTGAATTCATATTAAAACTACTCCC 57.069 33.333 9.40 0.00 0.00 4.30
4548 4835 9.605955 CACAAAAAGTACATCGTTGAATTCATA 57.394 29.630 9.40 0.00 0.00 2.15
4549 4836 7.594758 CCACAAAAAGTACATCGTTGAATTCAT 59.405 33.333 9.40 0.00 0.00 2.57
4550 4837 6.915300 CCACAAAAAGTACATCGTTGAATTCA 59.085 34.615 3.38 3.38 0.00 2.57
4551 4838 6.129194 GCCACAAAAAGTACATCGTTGAATTC 60.129 38.462 0.00 0.00 0.00 2.17
4552 4839 5.689961 GCCACAAAAAGTACATCGTTGAATT 59.310 36.000 0.00 0.00 0.00 2.17
4553 4840 5.219633 GCCACAAAAAGTACATCGTTGAAT 58.780 37.500 0.00 0.00 0.00 2.57
4554 4841 4.096532 TGCCACAAAAAGTACATCGTTGAA 59.903 37.500 0.00 0.00 0.00 2.69
4555 4842 3.628032 TGCCACAAAAAGTACATCGTTGA 59.372 39.130 0.00 0.00 0.00 3.18
4556 4843 3.958704 TGCCACAAAAAGTACATCGTTG 58.041 40.909 0.00 0.00 0.00 4.10
4557 4844 4.097286 AGTTGCCACAAAAAGTACATCGTT 59.903 37.500 0.00 0.00 0.00 3.85
4558 4845 3.630312 AGTTGCCACAAAAAGTACATCGT 59.370 39.130 0.00 0.00 0.00 3.73
4559 4846 3.974401 CAGTTGCCACAAAAAGTACATCG 59.026 43.478 0.00 0.00 0.00 3.84
4560 4847 4.932146 ACAGTTGCCACAAAAAGTACATC 58.068 39.130 0.00 0.00 0.00 3.06
4561 4848 5.337578 AACAGTTGCCACAAAAAGTACAT 57.662 34.783 0.00 0.00 0.00 2.29
4562 4849 4.792521 AACAGTTGCCACAAAAAGTACA 57.207 36.364 0.00 0.00 0.00 2.90
4563 4850 7.489757 TGAATTAACAGTTGCCACAAAAAGTAC 59.510 33.333 0.00 0.00 0.00 2.73
4564 4851 7.548097 TGAATTAACAGTTGCCACAAAAAGTA 58.452 30.769 0.00 0.00 0.00 2.24
4565 4852 6.402222 TGAATTAACAGTTGCCACAAAAAGT 58.598 32.000 0.00 0.00 0.00 2.66
4566 4853 6.900568 TGAATTAACAGTTGCCACAAAAAG 57.099 33.333 0.00 0.00 0.00 2.27
4567 4854 7.201679 CCATTGAATTAACAGTTGCCACAAAAA 60.202 33.333 0.00 0.00 0.00 1.94
4568 4855 6.259608 CCATTGAATTAACAGTTGCCACAAAA 59.740 34.615 0.00 0.00 0.00 2.44
4569 4856 5.757320 CCATTGAATTAACAGTTGCCACAAA 59.243 36.000 0.00 0.00 0.00 2.83
4570 4857 5.163364 ACCATTGAATTAACAGTTGCCACAA 60.163 36.000 0.00 0.00 0.00 3.33
4571 4858 4.343526 ACCATTGAATTAACAGTTGCCACA 59.656 37.500 0.00 0.00 0.00 4.17
4572 4859 4.881920 ACCATTGAATTAACAGTTGCCAC 58.118 39.130 0.00 0.00 0.00 5.01
4573 4860 6.849085 ATACCATTGAATTAACAGTTGCCA 57.151 33.333 0.00 0.00 0.00 4.92
4574 4861 7.996385 ACTATACCATTGAATTAACAGTTGCC 58.004 34.615 0.00 0.00 0.00 4.52
4575 4862 9.503427 GAACTATACCATTGAATTAACAGTTGC 57.497 33.333 0.00 0.00 0.00 4.17
4580 4867 9.184523 CCCTTGAACTATACCATTGAATTAACA 57.815 33.333 0.00 0.00 0.00 2.41
4581 4868 8.630037 CCCCTTGAACTATACCATTGAATTAAC 58.370 37.037 0.00 0.00 0.00 2.01
4582 4869 7.286775 GCCCCTTGAACTATACCATTGAATTAA 59.713 37.037 0.00 0.00 0.00 1.40
4583 4870 6.775629 GCCCCTTGAACTATACCATTGAATTA 59.224 38.462 0.00 0.00 0.00 1.40
4584 4871 5.598417 GCCCCTTGAACTATACCATTGAATT 59.402 40.000 0.00 0.00 0.00 2.17
4585 4872 5.103515 AGCCCCTTGAACTATACCATTGAAT 60.104 40.000 0.00 0.00 0.00 2.57
4586 4873 4.229582 AGCCCCTTGAACTATACCATTGAA 59.770 41.667 0.00 0.00 0.00 2.69
4587 4874 3.785887 AGCCCCTTGAACTATACCATTGA 59.214 43.478 0.00 0.00 0.00 2.57
4588 4875 4.137543 GAGCCCCTTGAACTATACCATTG 58.862 47.826 0.00 0.00 0.00 2.82
4589 4876 3.138468 GGAGCCCCTTGAACTATACCATT 59.862 47.826 0.00 0.00 0.00 3.16
4590 4877 2.711547 GGAGCCCCTTGAACTATACCAT 59.288 50.000 0.00 0.00 0.00 3.55
4591 4878 2.124411 GGAGCCCCTTGAACTATACCA 58.876 52.381 0.00 0.00 0.00 3.25
4592 4879 2.104963 CAGGAGCCCCTTGAACTATACC 59.895 54.545 0.00 0.00 42.02 2.73
4593 4880 2.485657 GCAGGAGCCCCTTGAACTATAC 60.486 54.545 0.00 0.00 42.02 1.47
4594 4881 1.768870 GCAGGAGCCCCTTGAACTATA 59.231 52.381 0.00 0.00 42.02 1.31
4595 4882 0.548510 GCAGGAGCCCCTTGAACTAT 59.451 55.000 0.00 0.00 42.02 2.12
4596 4883 1.991230 GCAGGAGCCCCTTGAACTA 59.009 57.895 0.00 0.00 42.02 2.24
4597 4884 2.759795 GCAGGAGCCCCTTGAACT 59.240 61.111 0.00 0.00 42.02 3.01
4607 4894 1.741770 CGTAACACCAGGCAGGAGC 60.742 63.158 1.67 0.00 41.22 4.70
4608 4895 0.670546 CACGTAACACCAGGCAGGAG 60.671 60.000 1.67 0.00 41.22 3.69
4609 4896 1.369692 CACGTAACACCAGGCAGGA 59.630 57.895 1.67 0.00 41.22 3.86
4610 4897 2.325082 GCACGTAACACCAGGCAGG 61.325 63.158 0.00 0.00 45.67 4.85
4611 4898 2.325082 GGCACGTAACACCAGGCAG 61.325 63.158 0.00 0.00 0.00 4.85
4612 4899 2.281208 GGCACGTAACACCAGGCA 60.281 61.111 0.00 0.00 0.00 4.75
4613 4900 3.053896 GGGCACGTAACACCAGGC 61.054 66.667 0.00 0.00 0.00 4.85
4614 4901 2.359478 GGGGCACGTAACACCAGG 60.359 66.667 4.20 0.00 0.00 4.45
4615 4902 1.072505 AAGGGGCACGTAACACCAG 59.927 57.895 11.34 0.00 0.00 4.00
4616 4903 1.228003 CAAGGGGCACGTAACACCA 60.228 57.895 11.34 0.00 0.00 4.17
4617 4904 0.820482 AACAAGGGGCACGTAACACC 60.820 55.000 0.69 0.69 0.00 4.16
4618 4905 0.589708 GAACAAGGGGCACGTAACAC 59.410 55.000 0.00 0.00 0.00 3.32
4619 4906 0.881159 CGAACAAGGGGCACGTAACA 60.881 55.000 0.00 0.00 0.00 2.41
4620 4907 0.881600 ACGAACAAGGGGCACGTAAC 60.882 55.000 0.00 0.00 35.49 2.50
4621 4908 0.600782 GACGAACAAGGGGCACGTAA 60.601 55.000 0.00 0.00 37.32 3.18
4622 4909 1.005867 GACGAACAAGGGGCACGTA 60.006 57.895 0.00 0.00 37.32 3.57
4623 4910 2.280592 GACGAACAAGGGGCACGT 60.281 61.111 0.00 0.00 39.82 4.49
4624 4911 1.164041 AAAGACGAACAAGGGGCACG 61.164 55.000 0.00 0.00 0.00 5.34
4625 4912 1.029681 AAAAGACGAACAAGGGGCAC 58.970 50.000 0.00 0.00 0.00 5.01
4626 4913 1.679153 GAAAAAGACGAACAAGGGGCA 59.321 47.619 0.00 0.00 0.00 5.36
4627 4914 1.000607 GGAAAAAGACGAACAAGGGGC 60.001 52.381 0.00 0.00 0.00 5.80
4628 4915 2.293399 CAGGAAAAAGACGAACAAGGGG 59.707 50.000 0.00 0.00 0.00 4.79
4629 4916 3.211045 TCAGGAAAAAGACGAACAAGGG 58.789 45.455 0.00 0.00 0.00 3.95
4630 4917 3.251004 CCTCAGGAAAAAGACGAACAAGG 59.749 47.826 0.00 0.00 0.00 3.61
4631 4918 4.127171 TCCTCAGGAAAAAGACGAACAAG 58.873 43.478 0.00 0.00 0.00 3.16
4632 4919 4.145365 TCCTCAGGAAAAAGACGAACAA 57.855 40.909 0.00 0.00 0.00 2.83
4633 4920 3.830744 TCCTCAGGAAAAAGACGAACA 57.169 42.857 0.00 0.00 0.00 3.18
4634 4921 4.211584 GTCTTCCTCAGGAAAAAGACGAAC 59.788 45.833 7.78 0.00 41.54 3.95
4635 4922 4.377897 GTCTTCCTCAGGAAAAAGACGAA 58.622 43.478 7.78 0.00 41.54 3.85
4636 4923 3.991367 GTCTTCCTCAGGAAAAAGACGA 58.009 45.455 7.78 0.00 41.54 4.20
4638 4925 5.126779 ACAAGTCTTCCTCAGGAAAAAGAC 58.873 41.667 14.22 14.22 45.04 3.01
4639 4926 5.373812 ACAAGTCTTCCTCAGGAAAAAGA 57.626 39.130 7.78 0.00 41.54 2.52
4640 4927 7.550906 CCTATACAAGTCTTCCTCAGGAAAAAG 59.449 40.741 7.78 0.00 41.54 2.27
4641 4928 7.394816 CCTATACAAGTCTTCCTCAGGAAAAA 58.605 38.462 7.78 0.00 41.54 1.94
4642 4929 6.070194 CCCTATACAAGTCTTCCTCAGGAAAA 60.070 42.308 7.78 0.00 41.54 2.29
4643 4930 5.425539 CCCTATACAAGTCTTCCTCAGGAAA 59.574 44.000 7.78 0.00 41.54 3.13
4644 4931 4.962995 CCCTATACAAGTCTTCCTCAGGAA 59.037 45.833 5.84 5.84 39.66 3.36
4645 4932 4.016479 ACCCTATACAAGTCTTCCTCAGGA 60.016 45.833 0.00 0.00 0.00 3.86
4646 4933 4.290942 ACCCTATACAAGTCTTCCTCAGG 58.709 47.826 0.00 0.00 0.00 3.86
4647 4934 4.342665 GGACCCTATACAAGTCTTCCTCAG 59.657 50.000 0.00 0.00 0.00 3.35
4648 4935 4.264668 TGGACCCTATACAAGTCTTCCTCA 60.265 45.833 0.00 0.00 0.00 3.86
4649 4936 4.287552 TGGACCCTATACAAGTCTTCCTC 58.712 47.826 0.00 0.00 0.00 3.71
4650 4937 4.348020 TGGACCCTATACAAGTCTTCCT 57.652 45.455 0.00 0.00 0.00 3.36
4651 4938 4.040584 GGATGGACCCTATACAAGTCTTCC 59.959 50.000 0.00 0.00 0.00 3.46
4652 4939 4.902448 AGGATGGACCCTATACAAGTCTTC 59.098 45.833 0.00 0.00 40.05 2.87
4653 4940 4.897051 AGGATGGACCCTATACAAGTCTT 58.103 43.478 0.00 0.00 40.05 3.01
4654 4941 4.561254 AGGATGGACCCTATACAAGTCT 57.439 45.455 0.00 0.00 40.05 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.