Multiple sequence alignment - TraesCS5A01G178300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G178300 chr5A 100.000 3766 0 0 1 3766 375848938 375845173 0.000000e+00 6955.0
1 TraesCS5A01G178300 chr5A 100.000 3185 0 0 4103 7287 375844836 375841652 0.000000e+00 5882.0
2 TraesCS5A01G178300 chr5A 97.414 116 3 0 4462 4577 7007324 7007439 1.600000e-46 198.0
3 TraesCS5A01G178300 chr5D 91.730 3277 129 63 283 3463 284116502 284113272 0.000000e+00 4420.0
4 TraesCS5A01G178300 chr5D 94.525 2758 91 25 4573 7287 284112490 284109750 0.000000e+00 4202.0
5 TraesCS5A01G178300 chr5D 93.704 270 17 0 3497 3766 284113273 284113004 8.800000e-109 405.0
6 TraesCS5A01G178300 chr5D 81.687 415 21 15 4103 4466 284112902 284112492 1.990000e-75 294.0
7 TraesCS5A01G178300 chr5B 94.052 2707 99 22 4573 7249 321974098 321971424 0.000000e+00 4050.0
8 TraesCS5A01G178300 chr5B 93.351 1504 60 18 1953 3438 321976598 321975117 0.000000e+00 2187.0
9 TraesCS5A01G178300 chr5B 88.386 1791 104 44 208 1953 321978393 321976662 0.000000e+00 2060.0
10 TraesCS5A01G178300 chr5B 88.342 386 23 10 4103 4466 321974485 321974100 1.870000e-120 444.0
11 TraesCS5A01G178300 chr5B 95.804 143 6 0 3497 3639 321974899 321974757 1.580000e-56 231.0
12 TraesCS5A01G178300 chr5B 94.958 119 5 1 3643 3761 321974705 321974588 1.250000e-42 185.0
13 TraesCS5A01G178300 chr5B 95.000 40 1 1 7248 7287 321971397 321971359 2.200000e-05 62.1
14 TraesCS5A01G178300 chr6D 95.305 213 9 1 2 213 84625496 84625708 3.260000e-88 337.0
15 TraesCS5A01G178300 chr1D 93.981 216 9 4 2 216 481681105 481681317 2.540000e-84 324.0
16 TraesCS5A01G178300 chr1D 94.340 212 9 3 2 212 409574580 409574371 9.120000e-84 322.0
17 TraesCS5A01G178300 chr1D 93.780 209 11 2 2 209 415172477 415172270 5.490000e-81 313.0
18 TraesCS5A01G178300 chr3A 94.286 210 9 3 2 209 127967380 127967172 1.180000e-82 318.0
19 TraesCS5A01G178300 chr3A 93.056 216 11 4 2 214 610755993 610756207 5.490000e-81 313.0
20 TraesCS5A01G178300 chr3A 93.798 129 4 4 4451 4576 681449768 681449895 2.680000e-44 191.0
21 TraesCS5A01G178300 chr2D 94.258 209 10 2 2 209 619477946 619478153 1.180000e-82 318.0
22 TraesCS5A01G178300 chr2D 96.694 121 2 2 4455 4574 87030965 87031084 4.460000e-47 200.0
23 TraesCS5A01G178300 chr2D 96.639 119 2 2 4455 4572 87035722 87035839 5.770000e-46 196.0
24 TraesCS5A01G178300 chr2A 93.780 209 13 0 1 209 677889826 677889618 1.530000e-81 315.0
25 TraesCS5A01G178300 chr2A 98.246 114 1 1 4460 4573 2648820 2648708 1.600000e-46 198.0
26 TraesCS5A01G178300 chr2A 96.639 119 3 1 4459 4577 58791629 58791512 5.770000e-46 196.0
27 TraesCS5A01G178300 chr2A 95.902 122 4 1 4454 4575 78333827 78333707 5.770000e-46 196.0
28 TraesCS5A01G178300 chr4D 93.088 217 10 3 2 213 256577785 256577569 5.490000e-81 313.0
29 TraesCS5A01G178300 chr6A 98.230 113 2 0 4466 4578 55730924 55731036 1.600000e-46 198.0
30 TraesCS5A01G178300 chr6A 86.170 94 11 2 7081 7173 68559154 68559246 4.650000e-17 100.0
31 TraesCS5A01G178300 chr6A 84.043 94 13 2 7081 7173 68567292 68567384 1.010000e-13 89.8
32 TraesCS5A01G178300 chr6A 100.000 28 0 0 7074 7101 223203693 223203720 1.300000e-02 52.8
33 TraesCS5A01G178300 chr4A 95.000 120 4 2 4456 4574 609795331 609795449 3.470000e-43 187.0
34 TraesCS5A01G178300 chr7B 85.714 91 11 2 6906 6994 202261911 202261821 2.160000e-15 95.3
35 TraesCS5A01G178300 chr7B 100.000 28 0 0 7079 7106 401553906 401553933 1.300000e-02 52.8
36 TraesCS5A01G178300 chr2B 78.448 116 17 5 6890 6997 664457193 664457078 1.310000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G178300 chr5A 375841652 375848938 7286 True 6418.500000 6955 100.000000 1 7287 2 chr5A.!!$R1 7286
1 TraesCS5A01G178300 chr5D 284109750 284116502 6752 True 2330.250000 4420 90.411500 283 7287 4 chr5D.!!$R1 7004
2 TraesCS5A01G178300 chr5B 321971359 321978393 7034 True 1317.014286 4050 92.841857 208 7287 7 chr5B.!!$R1 7079

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.028374 AAACGGACAAAAAGCGGACG 59.972 50.000 0.00 0.0 0.00 4.79 F
186 187 0.165079 CGAAATCACCGTCCGTTTGG 59.835 55.000 0.00 0.0 0.00 3.28 F
355 358 0.179004 TCATTCCACACCGCCAAAGT 60.179 50.000 0.00 0.0 0.00 2.66 F
730 757 0.243095 GTTCTAGACGCCGACAAGGT 59.757 55.000 0.00 0.0 43.70 3.50 F
983 1051 0.319383 CCTATGGCGCTGTAGCTCAG 60.319 60.000 7.64 0.0 46.12 3.35 F
2471 2661 0.254178 CACCAGCTCTATGCCCACTT 59.746 55.000 0.00 0.0 44.23 3.16 F
2891 3084 0.551879 TTCCCCCTTTTTGACACGGA 59.448 50.000 0.00 0.0 0.00 4.69 F
3490 3892 0.108774 CGAATAGGAGGAAAGCCCCC 59.891 60.000 0.00 0.0 34.66 5.40 F
4372 4868 0.868406 GGAACACTGAGGTTGCTTCG 59.132 55.000 0.00 0.0 36.34 3.79 F
5194 5724 0.605319 ACAACATTGCGACATCCCGT 60.605 50.000 0.00 0.0 0.00 5.28 F
5413 5943 1.299648 CGGCTCCTCCATGGTTTCA 59.700 57.895 12.58 0.0 37.07 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 1789 0.164217 GTACGTCGGATGCGCAAAAA 59.836 50.000 17.11 0.0 0.00 1.94 R
1863 1978 0.874175 TGGTCTTCGTGTCTTGTGCG 60.874 55.000 0.00 0.0 0.00 5.34 R
2068 2247 1.268352 TGTTGAAACATTAGCACCGCC 59.732 47.619 0.00 0.0 33.17 6.13 R
2386 2576 1.085091 CTGTTCTCCATCACTGCTGC 58.915 55.000 0.00 0.0 0.00 5.25 R
2874 3067 1.404843 TTTCCGTGTCAAAAAGGGGG 58.595 50.000 0.00 0.0 0.00 5.40 R
3488 3890 0.107214 ATGACAACATGTAGGCCGGG 60.107 55.000 2.18 0.0 35.21 5.73 R
4241 4704 0.868406 GCTCAAACACAAGTCCCTCG 59.132 55.000 0.00 0.0 0.00 4.63 R
5194 5724 0.761323 TGGAGGACCTTCGGTTGACA 60.761 55.000 0.00 0.0 35.25 3.58 R
6028 6558 0.536006 AGTCTGCCACAAGGTCAAGC 60.536 55.000 0.00 0.0 37.19 4.01 R
6130 6660 0.895559 TGCTGTCGCTCTTCTCCTCA 60.896 55.000 0.00 0.0 36.97 3.86 R
7250 7796 0.406750 TGTACTCCCTCCGTTCCAGA 59.593 55.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 2.126914 TTTTGCGTCGTCAAAATGGG 57.873 45.000 17.63 0.00 39.99 4.00
77 78 1.025812 TTTGCGTCGTCAAAATGGGT 58.974 45.000 10.89 0.00 33.47 4.51
78 79 0.589223 TTGCGTCGTCAAAATGGGTC 59.411 50.000 0.00 0.00 0.00 4.46
79 80 0.250124 TGCGTCGTCAAAATGGGTCT 60.250 50.000 0.00 0.00 0.00 3.85
80 81 0.442699 GCGTCGTCAAAATGGGTCTC 59.557 55.000 0.00 0.00 0.00 3.36
81 82 1.790755 CGTCGTCAAAATGGGTCTCA 58.209 50.000 0.00 0.00 0.00 3.27
82 83 1.726791 CGTCGTCAAAATGGGTCTCAG 59.273 52.381 0.00 0.00 0.00 3.35
83 84 2.076863 GTCGTCAAAATGGGTCTCAGG 58.923 52.381 0.00 0.00 0.00 3.86
84 85 0.804989 CGTCAAAATGGGTCTCAGGC 59.195 55.000 0.00 0.00 0.00 4.85
85 86 1.177401 GTCAAAATGGGTCTCAGGCC 58.823 55.000 0.00 0.00 0.00 5.19
86 87 0.776810 TCAAAATGGGTCTCAGGCCA 59.223 50.000 5.01 0.00 0.00 5.36
87 88 1.180029 CAAAATGGGTCTCAGGCCAG 58.820 55.000 5.01 0.00 0.00 4.85
88 89 0.613012 AAAATGGGTCTCAGGCCAGC 60.613 55.000 5.01 0.00 0.00 4.85
89 90 2.826777 AAATGGGTCTCAGGCCAGCG 62.827 60.000 5.01 0.00 0.00 5.18
91 92 4.021925 GGGTCTCAGGCCAGCGTT 62.022 66.667 5.01 0.00 0.00 4.84
92 93 2.743928 GGTCTCAGGCCAGCGTTG 60.744 66.667 5.01 0.00 0.00 4.10
94 95 4.020617 TCTCAGGCCAGCGTTGGG 62.021 66.667 20.66 3.46 45.16 4.12
114 115 4.459331 CACGCGCCGACCCAAATG 62.459 66.667 5.73 0.00 0.00 2.32
139 140 3.771160 GGGCATCCGTGTCCGTCT 61.771 66.667 0.00 0.00 40.95 4.18
140 141 2.509336 GGCATCCGTGTCCGTCTG 60.509 66.667 0.00 0.00 0.00 3.51
141 142 2.509336 GCATCCGTGTCCGTCTGG 60.509 66.667 0.00 0.00 0.00 3.86
142 143 2.509336 CATCCGTGTCCGTCTGGC 60.509 66.667 0.00 0.00 34.14 4.85
143 144 3.771160 ATCCGTGTCCGTCTGGCC 61.771 66.667 0.00 0.00 34.14 5.36
147 148 4.736896 GTGTCCGTCTGGCCGACC 62.737 72.222 18.07 8.23 39.56 4.79
151 152 4.323477 CCGTCTGGCCGACCCAAA 62.323 66.667 18.07 0.00 44.81 3.28
152 153 3.047877 CGTCTGGCCGACCCAAAC 61.048 66.667 18.07 0.34 44.81 2.93
153 154 3.047877 GTCTGGCCGACCCAAACG 61.048 66.667 14.46 0.00 44.81 3.60
162 163 2.113910 CGACCCAAACGGACAAAAAG 57.886 50.000 0.00 0.00 34.64 2.27
163 164 1.847818 GACCCAAACGGACAAAAAGC 58.152 50.000 0.00 0.00 34.64 3.51
164 165 0.101579 ACCCAAACGGACAAAAAGCG 59.898 50.000 0.00 0.00 34.64 4.68
165 166 0.596341 CCCAAACGGACAAAAAGCGG 60.596 55.000 0.00 0.00 0.00 5.52
166 167 0.382515 CCAAACGGACAAAAAGCGGA 59.617 50.000 0.00 0.00 0.00 5.54
167 168 1.472990 CAAACGGACAAAAAGCGGAC 58.527 50.000 0.00 0.00 0.00 4.79
168 169 0.028374 AAACGGACAAAAAGCGGACG 59.972 50.000 0.00 0.00 0.00 4.79
169 170 0.810823 AACGGACAAAAAGCGGACGA 60.811 50.000 0.00 0.00 0.00 4.20
170 171 0.810823 ACGGACAAAAAGCGGACGAA 60.811 50.000 0.00 0.00 0.00 3.85
171 172 0.305313 CGGACAAAAAGCGGACGAAA 59.695 50.000 0.00 0.00 0.00 3.46
172 173 1.069500 CGGACAAAAAGCGGACGAAAT 60.069 47.619 0.00 0.00 0.00 2.17
173 174 2.581637 GGACAAAAAGCGGACGAAATC 58.418 47.619 0.00 0.00 0.00 2.17
174 175 2.031508 GGACAAAAAGCGGACGAAATCA 60.032 45.455 0.00 0.00 0.00 2.57
175 176 2.971261 GACAAAAAGCGGACGAAATCAC 59.029 45.455 0.00 0.00 0.00 3.06
176 177 2.287368 ACAAAAAGCGGACGAAATCACC 60.287 45.455 0.00 0.00 0.00 4.02
178 179 0.601841 AAAGCGGACGAAATCACCGT 60.602 50.000 14.29 0.00 46.95 4.83
184 185 3.294079 ACGAAATCACCGTCCGTTT 57.706 47.368 0.00 0.00 34.97 3.60
185 186 0.863144 ACGAAATCACCGTCCGTTTG 59.137 50.000 0.00 0.00 34.97 2.93
186 187 0.165079 CGAAATCACCGTCCGTTTGG 59.835 55.000 0.00 0.00 0.00 3.28
187 188 0.519961 GAAATCACCGTCCGTTTGGG 59.480 55.000 0.00 0.00 35.24 4.12
188 189 0.179012 AAATCACCGTCCGTTTGGGT 60.179 50.000 0.00 0.00 37.00 4.51
189 190 0.604511 AATCACCGTCCGTTTGGGTC 60.605 55.000 0.00 0.00 37.00 4.46
190 191 2.775032 ATCACCGTCCGTTTGGGTCG 62.775 60.000 0.00 0.00 45.31 4.79
203 204 4.415783 GGTCGGCCCATTGAAGTT 57.584 55.556 0.00 0.00 0.00 2.66
204 205 1.883021 GGTCGGCCCATTGAAGTTG 59.117 57.895 0.00 0.00 0.00 3.16
205 206 1.212751 GTCGGCCCATTGAAGTTGC 59.787 57.895 0.00 0.00 0.00 4.17
206 207 1.074775 TCGGCCCATTGAAGTTGCT 59.925 52.632 0.00 0.00 0.00 3.91
221 224 2.549754 AGTTGCTCTTACATGCACACAC 59.450 45.455 0.00 0.00 39.05 3.82
228 231 3.996363 TCTTACATGCACACACAGTCATC 59.004 43.478 0.00 0.00 0.00 2.92
229 232 2.556144 ACATGCACACACAGTCATCT 57.444 45.000 0.00 0.00 0.00 2.90
232 235 3.259123 ACATGCACACACAGTCATCTCTA 59.741 43.478 0.00 0.00 0.00 2.43
234 237 5.127682 ACATGCACACACAGTCATCTCTATA 59.872 40.000 0.00 0.00 0.00 1.31
237 240 5.869344 TGCACACACAGTCATCTCTATAAAC 59.131 40.000 0.00 0.00 0.00 2.01
238 241 5.869344 GCACACACAGTCATCTCTATAAACA 59.131 40.000 0.00 0.00 0.00 2.83
242 245 6.033937 CACACAGTCATCTCTATAAACACACG 59.966 42.308 0.00 0.00 0.00 4.49
246 249 5.750547 AGTCATCTCTATAAACACACGCATG 59.249 40.000 0.00 0.00 0.00 4.06
247 250 5.520288 GTCATCTCTATAAACACACGCATGT 59.480 40.000 0.00 0.00 40.80 3.21
250 253 5.956642 TCTCTATAAACACACGCATGTACA 58.043 37.500 0.00 0.00 36.72 2.90
253 256 7.547722 TCTCTATAAACACACGCATGTACAATT 59.452 33.333 0.00 0.00 36.72 2.32
265 268 5.220472 CGCATGTACAATTCACCTCTACAAG 60.220 44.000 0.00 0.00 0.00 3.16
279 282 3.357203 TCTACAAGCACCTTCGAGAGAT 58.643 45.455 0.00 0.00 41.60 2.75
285 288 1.134848 GCACCTTCGAGAGATTGAGCT 60.135 52.381 0.00 0.00 41.60 4.09
355 358 0.179004 TCATTCCACACCGCCAAAGT 60.179 50.000 0.00 0.00 0.00 2.66
414 417 9.880157 CAATCAAAGATTTATGTTTCCTCCAAT 57.120 29.630 0.00 0.00 0.00 3.16
417 420 9.087871 TCAAAGATTTATGTTTCCTCCAATTCA 57.912 29.630 0.00 0.00 0.00 2.57
418 421 9.709495 CAAAGATTTATGTTTCCTCCAATTCAA 57.291 29.630 0.00 0.00 0.00 2.69
419 422 9.933723 AAAGATTTATGTTTCCTCCAATTCAAG 57.066 29.630 0.00 0.00 0.00 3.02
420 423 7.550712 AGATTTATGTTTCCTCCAATTCAAGC 58.449 34.615 0.00 0.00 0.00 4.01
421 424 5.659440 TTATGTTTCCTCCAATTCAAGCC 57.341 39.130 0.00 0.00 0.00 4.35
443 470 0.471591 TGCTCCAAATTTGCCAGGGT 60.472 50.000 12.92 0.00 0.00 4.34
450 477 0.763986 AATTTGCCAGGGTTGCCAGT 60.764 50.000 0.00 0.00 0.00 4.00
451 478 1.474332 ATTTGCCAGGGTTGCCAGTG 61.474 55.000 0.00 0.00 0.00 3.66
452 479 2.580155 TTTGCCAGGGTTGCCAGTGA 62.580 55.000 0.00 0.00 0.00 3.41
453 480 2.203480 GCCAGGGTTGCCAGTGAA 60.203 61.111 0.00 0.00 0.00 3.18
454 481 1.607467 GCCAGGGTTGCCAGTGAAT 60.607 57.895 0.00 0.00 0.00 2.57
574 601 0.890996 AGGAAAAAGGCAGACGCAGG 60.891 55.000 0.00 0.00 41.24 4.85
708 735 3.393426 AACACCCTCGGGAGTAATCTA 57.607 47.619 9.43 0.00 38.11 1.98
711 738 3.150767 CACCCTCGGGAGTAATCTAGAG 58.849 54.545 9.43 7.95 38.96 2.43
712 739 2.784682 ACCCTCGGGAGTAATCTAGAGT 59.215 50.000 9.43 0.00 38.96 3.24
713 740 3.204831 ACCCTCGGGAGTAATCTAGAGTT 59.795 47.826 9.43 0.00 38.96 3.01
715 742 4.446600 CCCTCGGGAGTAATCTAGAGTTCT 60.447 50.000 0.00 0.00 37.50 3.01
717 744 5.935789 CCTCGGGAGTAATCTAGAGTTCTAG 59.064 48.000 9.44 9.44 45.57 2.43
718 745 9.106291 CCCTCGGGAGTAATCTAGAGTTCTAGA 62.106 48.148 18.39 18.39 46.78 2.43
727 754 1.531423 AGAGTTCTAGACGCCGACAA 58.469 50.000 0.00 0.00 0.00 3.18
728 755 1.469308 AGAGTTCTAGACGCCGACAAG 59.531 52.381 0.00 0.00 0.00 3.16
729 756 0.526662 AGTTCTAGACGCCGACAAGG 59.473 55.000 0.00 0.00 44.97 3.61
730 757 0.243095 GTTCTAGACGCCGACAAGGT 59.757 55.000 0.00 0.00 43.70 3.50
768 817 6.446909 TTTCCAAGGGCTTAAAATCCAAAT 57.553 33.333 0.00 0.00 0.00 2.32
836 897 4.724293 TCACTAGGAGATGGAGAGAGAGAA 59.276 45.833 0.00 0.00 0.00 2.87
847 908 6.957920 TGGAGAGAGAGAAAGTATGATGAG 57.042 41.667 0.00 0.00 0.00 2.90
848 909 6.430864 TGGAGAGAGAGAAAGTATGATGAGT 58.569 40.000 0.00 0.00 0.00 3.41
983 1051 0.319383 CCTATGGCGCTGTAGCTCAG 60.319 60.000 7.64 0.00 46.12 3.35
984 1052 0.319383 CTATGGCGCTGTAGCTCAGG 60.319 60.000 7.64 6.39 43.78 3.86
1165 1233 0.998945 CTCTCCCTCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
1168 1236 0.996762 TCCCTCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
1171 1239 1.522900 CTCTCCCTCTCCCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
1172 1240 1.421646 CTCTCCCTCTCCCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
1173 1241 0.478507 CTCCCTCTCCCTCTCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
1190 1262 5.975282 TCTCTCCACATTTCATCAGAGAAG 58.025 41.667 0.00 0.00 34.75 2.85
1261 1334 1.667724 CCATCTCATCGGTTTGTGAGC 59.332 52.381 0.00 0.00 41.21 4.26
1275 1348 3.788227 TGTGAGCTATGACCTGGTTTT 57.212 42.857 0.00 0.00 0.00 2.43
1286 1359 1.209261 ACCTGGTTTTGGGTGCTTTTG 59.791 47.619 0.00 0.00 34.16 2.44
1287 1360 1.474855 CCTGGTTTTGGGTGCTTTTGG 60.475 52.381 0.00 0.00 0.00 3.28
1288 1361 1.209261 CTGGTTTTGGGTGCTTTTGGT 59.791 47.619 0.00 0.00 0.00 3.67
1289 1362 1.630878 TGGTTTTGGGTGCTTTTGGTT 59.369 42.857 0.00 0.00 0.00 3.67
1290 1363 2.040412 TGGTTTTGGGTGCTTTTGGTTT 59.960 40.909 0.00 0.00 0.00 3.27
1291 1364 2.680841 GGTTTTGGGTGCTTTTGGTTTC 59.319 45.455 0.00 0.00 0.00 2.78
1292 1365 3.605634 GTTTTGGGTGCTTTTGGTTTCT 58.394 40.909 0.00 0.00 0.00 2.52
1293 1366 3.990959 TTTGGGTGCTTTTGGTTTCTT 57.009 38.095 0.00 0.00 0.00 2.52
1294 1367 3.535280 TTGGGTGCTTTTGGTTTCTTC 57.465 42.857 0.00 0.00 0.00 2.87
1320 1431 4.221041 TCTCTCTCTCTCTCACGTCAGTAA 59.779 45.833 0.00 0.00 0.00 2.24
1321 1432 4.500127 TCTCTCTCTCTCACGTCAGTAAG 58.500 47.826 0.00 0.00 0.00 2.34
1322 1433 3.004171 TCTCTCTCTCACGTCAGTAAGC 58.996 50.000 0.00 0.00 0.00 3.09
1323 1434 2.744741 CTCTCTCTCACGTCAGTAAGCA 59.255 50.000 0.00 0.00 0.00 3.91
1324 1435 2.484651 TCTCTCTCACGTCAGTAAGCAC 59.515 50.000 0.00 0.00 0.00 4.40
1325 1436 2.486203 CTCTCTCACGTCAGTAAGCACT 59.514 50.000 0.00 0.00 34.42 4.40
1326 1437 3.671716 TCTCTCACGTCAGTAAGCACTA 58.328 45.455 0.00 0.00 32.21 2.74
1383 1494 5.449999 GGTTCTGAAAACGATTTCTGGTGTT 60.450 40.000 19.78 0.00 44.32 3.32
1384 1495 5.828299 TCTGAAAACGATTTCTGGTGTTT 57.172 34.783 19.78 0.00 44.32 2.83
1388 1499 2.793278 ACGATTTCTGGTGTTTTGCC 57.207 45.000 0.00 0.00 0.00 4.52
1389 1500 1.339929 ACGATTTCTGGTGTTTTGCCC 59.660 47.619 0.00 0.00 0.00 5.36
1423 1534 1.410882 CTCAACGGGAGGAGAGGATTC 59.589 57.143 0.00 0.00 40.13 2.52
1466 1577 2.354203 GCTGGTTTCGGTGATCTTCTCT 60.354 50.000 0.00 0.00 0.00 3.10
1467 1578 3.516615 CTGGTTTCGGTGATCTTCTCTC 58.483 50.000 0.00 0.00 0.00 3.20
1468 1579 2.233922 TGGTTTCGGTGATCTTCTCTCC 59.766 50.000 0.00 0.00 34.71 3.71
1469 1580 2.233922 GGTTTCGGTGATCTTCTCTCCA 59.766 50.000 0.00 0.00 37.37 3.86
1551 1663 1.956477 ACGCCTGTTGCATTTTCTTCT 59.044 42.857 0.00 0.00 41.33 2.85
1552 1664 2.030805 ACGCCTGTTGCATTTTCTTCTC 60.031 45.455 0.00 0.00 41.33 2.87
1553 1665 2.669391 CGCCTGTTGCATTTTCTTCTCC 60.669 50.000 0.00 0.00 41.33 3.71
1554 1666 2.560105 GCCTGTTGCATTTTCTTCTCCT 59.440 45.455 0.00 0.00 40.77 3.69
1651 1766 1.216427 GCCCTCTCCCATTCCATCTTT 59.784 52.381 0.00 0.00 0.00 2.52
1658 1773 6.463614 CCTCTCCCATTCCATCTTTGTACTAG 60.464 46.154 0.00 0.00 0.00 2.57
1674 1789 4.781087 TGTACTAGTAGCACCTTGGGAAAT 59.219 41.667 1.87 0.00 0.00 2.17
1716 1831 2.817844 GTTCCTGTGGTCCATTTACACC 59.182 50.000 0.00 0.00 34.33 4.16
1720 1835 0.406361 GTGGTCCATTTACACCCCCA 59.594 55.000 0.00 0.00 0.00 4.96
1762 1877 5.181245 ACGTCCCACTGAAATTTTGTATCTG 59.819 40.000 0.00 0.00 0.00 2.90
1841 1956 3.926616 TCTCTGAATCTTTGGTCCGTTC 58.073 45.455 0.00 0.00 0.00 3.95
1899 2014 4.832248 AGACCATATTTTGTCTTCGCTGA 58.168 39.130 0.00 0.00 38.67 4.26
1901 2016 6.582636 AGACCATATTTTGTCTTCGCTGATA 58.417 36.000 0.00 0.00 38.67 2.15
1902 2017 7.047891 AGACCATATTTTGTCTTCGCTGATAA 58.952 34.615 0.00 0.00 38.67 1.75
1991 2170 4.067896 TCTTGGAACTGAGCAATTGTCTC 58.932 43.478 17.68 17.68 0.00 3.36
2004 2183 6.393990 AGCAATTGTCTCTAGCTATTATCCG 58.606 40.000 7.40 0.00 33.06 4.18
2068 2247 5.584649 TGTTTCTCCAGTAACTTGACTGTTG 59.415 40.000 3.11 0.00 44.54 3.33
2086 2265 1.610363 TGGCGGTGCTAATGTTTCAA 58.390 45.000 0.00 0.00 0.00 2.69
2168 2353 6.431543 TGTGTACAGTTTCTCTTTGAACCAAA 59.568 34.615 0.00 0.00 33.88 3.28
2292 2477 1.939934 TCTTTGCTCCAACAGTCAACG 59.060 47.619 0.00 0.00 0.00 4.10
2295 2480 0.531974 TGCTCCAACAGTCAACGGTC 60.532 55.000 0.00 0.00 0.00 4.79
2471 2661 0.254178 CACCAGCTCTATGCCCACTT 59.746 55.000 0.00 0.00 44.23 3.16
2472 2662 1.486310 CACCAGCTCTATGCCCACTTA 59.514 52.381 0.00 0.00 44.23 2.24
2473 2663 1.486726 ACCAGCTCTATGCCCACTTAC 59.513 52.381 0.00 0.00 44.23 2.34
2842 3034 4.503714 AAATCGTGATATTGAGGTGGGT 57.496 40.909 0.00 0.00 0.00 4.51
2877 3070 9.588096 AATATCACCAAGATAAGTTATTTCCCC 57.412 33.333 0.00 0.00 42.27 4.81
2879 3072 5.494706 TCACCAAGATAAGTTATTTCCCCCT 59.505 40.000 0.00 0.00 0.00 4.79
2888 3081 5.801531 AGTTATTTCCCCCTTTTTGACAC 57.198 39.130 0.00 0.00 0.00 3.67
2891 3084 0.551879 TTCCCCCTTTTTGACACGGA 59.448 50.000 0.00 0.00 0.00 4.69
2938 3132 6.174720 TGACAACTTAGATTCTGGTGAACT 57.825 37.500 0.00 0.00 34.71 3.01
2951 3145 6.471233 TCTGGTGAACTGACTTATATCTGG 57.529 41.667 0.00 0.00 0.00 3.86
2977 3171 5.847304 TCCTTCGATTCACAATGATCTAGG 58.153 41.667 0.00 0.00 0.00 3.02
3013 3207 4.331168 GCTGTTGCTATCTCTACAACCTTG 59.669 45.833 0.00 0.00 42.33 3.61
3020 3214 6.436218 TGCTATCTCTACAACCTTGTGTCTTA 59.564 38.462 0.71 0.00 42.31 2.10
3022 3216 7.489757 GCTATCTCTACAACCTTGTGTCTTAAG 59.510 40.741 0.00 0.00 42.31 1.85
3024 3218 7.828508 TCTCTACAACCTTGTGTCTTAAGTA 57.171 36.000 1.63 0.00 42.31 2.24
3025 3219 7.655490 TCTCTACAACCTTGTGTCTTAAGTAC 58.345 38.462 1.63 4.24 42.31 2.73
3028 3222 8.480501 TCTACAACCTTGTGTCTTAAGTACTTT 58.519 33.333 14.49 0.00 42.31 2.66
3030 3224 6.317893 ACAACCTTGTGTCTTAAGTACTTTGG 59.682 38.462 14.49 7.26 40.49 3.28
3151 3347 5.746245 TGATAGACTTTTTGTTTTTGCGGTG 59.254 36.000 0.00 0.00 0.00 4.94
3310 3506 3.859386 GCATAACAGTGCAAACAATAGCC 59.141 43.478 0.00 0.00 44.43 3.93
3311 3507 4.380867 GCATAACAGTGCAAACAATAGCCT 60.381 41.667 0.00 0.00 44.43 4.58
3448 3850 7.506114 ACAGAGACTATTGGTAAAGTTGTGAA 58.494 34.615 0.00 0.00 0.00 3.18
3462 3864 9.061610 GTAAAGTTGTGAACATGCATATTACAC 57.938 33.333 0.00 6.14 0.00 2.90
3463 3865 7.452880 AAGTTGTGAACATGCATATTACACT 57.547 32.000 16.08 10.90 0.00 3.55
3464 3866 7.452880 AGTTGTGAACATGCATATTACACTT 57.547 32.000 16.08 4.92 0.00 3.16
3465 3867 7.885297 AGTTGTGAACATGCATATTACACTTT 58.115 30.769 16.08 4.94 0.00 2.66
3466 3868 8.359642 AGTTGTGAACATGCATATTACACTTTT 58.640 29.630 16.08 4.71 0.00 2.27
3467 3869 8.977505 GTTGTGAACATGCATATTACACTTTTT 58.022 29.630 16.08 0.00 0.00 1.94
3488 3890 3.277142 TTTCGAATAGGAGGAAAGCCC 57.723 47.619 0.00 0.00 33.31 5.19
3489 3891 1.129058 TCGAATAGGAGGAAAGCCCC 58.871 55.000 0.00 0.00 34.66 5.80
3490 3892 0.108774 CGAATAGGAGGAAAGCCCCC 59.891 60.000 0.00 0.00 34.66 5.40
3491 3893 0.108774 GAATAGGAGGAAAGCCCCCG 59.891 60.000 0.00 0.00 34.66 5.73
3492 3894 1.353394 AATAGGAGGAAAGCCCCCGG 61.353 60.000 0.00 0.00 34.66 5.73
3504 3906 2.674754 CCCCGGCCTACATGTTGT 59.325 61.111 2.30 0.00 0.00 3.32
3510 3912 1.134401 CGGCCTACATGTTGTCATCCT 60.134 52.381 2.30 0.00 31.15 3.24
3570 3972 5.193679 AGATCCAATTAACCTTGGTGCTAC 58.806 41.667 7.54 0.00 44.99 3.58
3623 4025 8.292448 CACTATGTTAACAACAATCAAGCTCTT 58.708 33.333 13.23 0.00 45.86 2.85
3624 4026 8.292448 ACTATGTTAACAACAATCAAGCTCTTG 58.708 33.333 13.23 3.32 45.86 3.02
3634 4036 5.591472 ACAATCAAGCTCTTGCAATATGCTA 59.409 36.000 17.28 7.18 45.31 3.49
3695 4145 5.596836 TGGAATTTTGCTTCTGAACTGTT 57.403 34.783 0.00 0.00 0.00 3.16
3696 4146 5.350633 TGGAATTTTGCTTCTGAACTGTTG 58.649 37.500 0.00 0.00 0.00 3.33
3727 4177 8.686334 CAACATAATAGCCCATTGTTTCTTAGT 58.314 33.333 0.00 0.00 0.00 2.24
4241 4704 7.969536 TGATAACATTTAGCAGGATAGCTTC 57.030 36.000 0.00 0.00 43.70 3.86
4246 4709 1.621992 TAGCAGGATAGCTTCGAGGG 58.378 55.000 0.00 0.00 43.70 4.30
4330 4826 4.136796 TGACATGCCTAATCACCTTATGC 58.863 43.478 0.00 0.00 33.13 3.14
4372 4868 0.868406 GGAACACTGAGGTTGCTTCG 59.132 55.000 0.00 0.00 36.34 3.79
4379 4875 4.242475 CACTGAGGTTGCTTCGTGTATAA 58.758 43.478 0.00 0.00 0.00 0.98
4380 4876 4.870426 CACTGAGGTTGCTTCGTGTATAAT 59.130 41.667 0.00 0.00 0.00 1.28
4381 4877 5.351465 CACTGAGGTTGCTTCGTGTATAATT 59.649 40.000 0.00 0.00 0.00 1.40
4382 4878 5.938125 ACTGAGGTTGCTTCGTGTATAATTT 59.062 36.000 0.00 0.00 0.00 1.82
4383 4879 6.128282 ACTGAGGTTGCTTCGTGTATAATTTG 60.128 38.462 0.00 0.00 0.00 2.32
4384 4880 5.703592 TGAGGTTGCTTCGTGTATAATTTGT 59.296 36.000 0.00 0.00 0.00 2.83
4386 4882 7.388224 TGAGGTTGCTTCGTGTATAATTTGTAA 59.612 33.333 0.00 0.00 0.00 2.41
4387 4883 7.748847 AGGTTGCTTCGTGTATAATTTGTAAG 58.251 34.615 0.00 0.00 0.00 2.34
4404 4905 2.480642 AAGGGGCTTTTGGTTGGTTA 57.519 45.000 0.00 0.00 0.00 2.85
4413 4914 5.586643 GGCTTTTGGTTGGTTAAAACATTCA 59.413 36.000 0.00 0.00 34.73 2.57
4418 4919 4.956700 TGGTTGGTTAAAACATTCACTGGA 59.043 37.500 0.00 0.00 27.55 3.86
4476 4977 6.415206 TTGGTTATCTAAATACTCCCTCCG 57.585 41.667 0.00 0.00 0.00 4.63
4477 4978 5.461327 TGGTTATCTAAATACTCCCTCCGT 58.539 41.667 0.00 0.00 0.00 4.69
4478 4979 5.901276 TGGTTATCTAAATACTCCCTCCGTT 59.099 40.000 0.00 0.00 0.00 4.44
4479 4980 6.041296 TGGTTATCTAAATACTCCCTCCGTTC 59.959 42.308 0.00 0.00 0.00 3.95
4480 4981 6.453943 GTTATCTAAATACTCCCTCCGTTCC 58.546 44.000 0.00 0.00 0.00 3.62
4481 4982 2.954318 TCTAAATACTCCCTCCGTTCCG 59.046 50.000 0.00 0.00 0.00 4.30
4482 4983 1.856629 AAATACTCCCTCCGTTCCGA 58.143 50.000 0.00 0.00 0.00 4.55
4483 4984 1.856629 AATACTCCCTCCGTTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
4484 4985 2.083628 ATACTCCCTCCGTTCCGAAT 57.916 50.000 0.00 0.00 0.00 3.34
4485 4986 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
4486 4987 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
4487 4988 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
4488 4989 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
4489 4990 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
4490 4991 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4491 4992 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4492 4993 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4493 4994 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
4494 4995 2.030007 TCCGTTCCGAATTACTTGTCGT 60.030 45.455 0.00 0.00 35.48 4.34
4495 4996 3.190327 TCCGTTCCGAATTACTTGTCGTA 59.810 43.478 0.00 0.00 35.48 3.43
4496 4997 3.545078 CCGTTCCGAATTACTTGTCGTAG 59.455 47.826 0.00 0.00 35.48 3.51
4497 4998 3.545078 CGTTCCGAATTACTTGTCGTAGG 59.455 47.826 0.00 0.00 35.48 3.18
4498 4999 4.488879 GTTCCGAATTACTTGTCGTAGGT 58.511 43.478 0.00 0.00 35.48 3.08
4499 5000 5.640732 GTTCCGAATTACTTGTCGTAGGTA 58.359 41.667 0.00 0.00 35.48 3.08
4500 5001 6.268566 GTTCCGAATTACTTGTCGTAGGTAT 58.731 40.000 0.00 0.00 35.48 2.73
4501 5002 5.824429 TCCGAATTACTTGTCGTAGGTATG 58.176 41.667 0.00 0.00 35.48 2.39
4502 5003 4.980434 CCGAATTACTTGTCGTAGGTATGG 59.020 45.833 0.00 0.00 35.48 2.74
4503 5004 5.221106 CCGAATTACTTGTCGTAGGTATGGA 60.221 44.000 0.00 0.00 35.48 3.41
4504 5005 6.444633 CGAATTACTTGTCGTAGGTATGGAT 58.555 40.000 0.00 0.00 32.61 3.41
4505 5006 6.362551 CGAATTACTTGTCGTAGGTATGGATG 59.637 42.308 0.00 0.00 32.61 3.51
4506 5007 6.726490 ATTACTTGTCGTAGGTATGGATGT 57.274 37.500 0.00 0.00 0.00 3.06
4507 5008 7.828508 ATTACTTGTCGTAGGTATGGATGTA 57.171 36.000 0.00 0.00 0.00 2.29
4508 5009 7.828508 TTACTTGTCGTAGGTATGGATGTAT 57.171 36.000 0.00 0.00 0.00 2.29
4509 5010 6.328641 ACTTGTCGTAGGTATGGATGTATC 57.671 41.667 0.00 0.00 0.00 2.24
4510 5011 6.069331 ACTTGTCGTAGGTATGGATGTATCT 58.931 40.000 0.00 0.00 0.00 1.98
4511 5012 7.229308 ACTTGTCGTAGGTATGGATGTATCTA 58.771 38.462 0.00 0.00 0.00 1.98
4512 5013 7.390996 ACTTGTCGTAGGTATGGATGTATCTAG 59.609 40.741 0.00 0.00 0.00 2.43
4513 5014 7.012661 TGTCGTAGGTATGGATGTATCTAGA 57.987 40.000 0.00 0.00 0.00 2.43
4514 5015 7.631007 TGTCGTAGGTATGGATGTATCTAGAT 58.369 38.462 10.73 10.73 0.00 1.98
4515 5016 7.553044 TGTCGTAGGTATGGATGTATCTAGATG 59.447 40.741 15.79 0.00 0.00 2.90
4516 5017 7.553402 GTCGTAGGTATGGATGTATCTAGATGT 59.447 40.741 15.79 1.25 0.00 3.06
4517 5018 8.765517 TCGTAGGTATGGATGTATCTAGATGTA 58.234 37.037 15.79 4.44 0.00 2.29
4518 5019 9.562408 CGTAGGTATGGATGTATCTAGATGTAT 57.438 37.037 15.79 9.11 0.00 2.29
4545 5046 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
4546 5047 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
4547 5048 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
4548 5049 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
4549 5050 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
4550 5051 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
4551 5052 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
4552 5053 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
4553 5054 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
4554 5055 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
4555 5056 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
4556 5057 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
4557 5058 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
4558 5059 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
4559 5060 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
4560 5061 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
4561 5062 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
4562 5063 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
4563 5064 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
4564 5065 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
4565 5066 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
4566 5067 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
4567 5068 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4568 5069 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4569 5070 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
4570 5071 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
4571 5072 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
4586 5087 2.037772 AGGGAGTATATTCCAGCTTGCG 59.962 50.000 15.53 0.00 39.09 4.85
4660 5169 7.969536 ATCAGGTCATATTTGGATTTACGAG 57.030 36.000 0.00 0.00 0.00 4.18
4896 5405 4.785301 TGATCCCACATTTTCTCAGATCC 58.215 43.478 0.00 0.00 0.00 3.36
4909 5418 9.712305 ATTTTCTCAGATCCCGTATATTAACTG 57.288 33.333 0.00 0.00 0.00 3.16
4952 5482 4.460382 ACTTCTGTGCAATATGTTTGGAGG 59.540 41.667 0.00 0.00 0.00 4.30
5149 5679 0.956633 CATTGCTGCACAACCAGTCT 59.043 50.000 0.00 0.00 42.27 3.24
5194 5724 0.605319 ACAACATTGCGACATCCCGT 60.605 50.000 0.00 0.00 0.00 5.28
5275 5805 2.739885 ACACTCTGACTGAGCATGTC 57.260 50.000 9.11 0.00 46.41 3.06
5378 5908 3.795731 ATGCCACCACAGCAGCACA 62.796 57.895 0.00 0.00 44.90 4.57
5413 5943 1.299648 CGGCTCCTCCATGGTTTCA 59.700 57.895 12.58 0.00 37.07 2.69
5800 6330 3.986435 TCTTCACCTCTCTGATCATCCA 58.014 45.455 0.00 0.00 0.00 3.41
5917 6447 4.577693 GTGATGCATGAATTTGAGGAGCTA 59.422 41.667 2.46 0.00 0.00 3.32
6130 6660 2.048127 GAGGTCGCTGTCGGCTTT 60.048 61.111 1.37 0.00 40.74 3.51
6384 6914 6.773976 TGTGATTCTTGTTGGTTCTTTCTT 57.226 33.333 0.00 0.00 0.00 2.52
6628 7158 9.787532 GCAATGTATCTTTGTTGTTGTATATGT 57.212 29.630 0.00 0.00 0.00 2.29
6681 7215 3.580084 AGTGCCCCACTGACATGT 58.420 55.556 0.00 0.00 43.63 3.21
6712 7246 3.119849 GCCCATGTTTCAGTGTGTCATAC 60.120 47.826 0.00 0.00 0.00 2.39
6884 7421 4.207019 GCAACAAGTGTTAAAGATGCACAC 59.793 41.667 0.00 0.00 41.03 3.82
7015 7556 7.174080 ACCCACATTGTTTATTTATTTGCAACC 59.826 33.333 0.00 0.00 0.00 3.77
7249 7795 7.436430 TTTGGTGTTGCAGACGTTATAATAA 57.564 32.000 0.00 0.00 0.00 1.40
7250 7796 7.618502 TTGGTGTTGCAGACGTTATAATAAT 57.381 32.000 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 2.159226 ACCCATTTTGACGACGCAAAAA 60.159 40.909 23.73 17.51 46.91 1.94
58 59 1.002251 GACCCATTTTGACGACGCAAA 60.002 47.619 11.61 11.61 36.08 3.68
59 60 0.589223 GACCCATTTTGACGACGCAA 59.411 50.000 0.00 0.00 0.00 4.85
60 61 0.250124 AGACCCATTTTGACGACGCA 60.250 50.000 0.00 0.00 0.00 5.24
61 62 0.442699 GAGACCCATTTTGACGACGC 59.557 55.000 0.00 0.00 0.00 5.19
62 63 1.726791 CTGAGACCCATTTTGACGACG 59.273 52.381 0.00 0.00 0.00 5.12
63 64 2.076863 CCTGAGACCCATTTTGACGAC 58.923 52.381 0.00 0.00 0.00 4.34
64 65 1.610624 GCCTGAGACCCATTTTGACGA 60.611 52.381 0.00 0.00 0.00 4.20
65 66 0.804989 GCCTGAGACCCATTTTGACG 59.195 55.000 0.00 0.00 0.00 4.35
66 67 1.177401 GGCCTGAGACCCATTTTGAC 58.823 55.000 0.00 0.00 0.00 3.18
67 68 0.776810 TGGCCTGAGACCCATTTTGA 59.223 50.000 3.32 0.00 0.00 2.69
68 69 1.180029 CTGGCCTGAGACCCATTTTG 58.820 55.000 3.32 0.00 0.00 2.44
69 70 0.613012 GCTGGCCTGAGACCCATTTT 60.613 55.000 14.77 0.00 0.00 1.82
70 71 1.000396 GCTGGCCTGAGACCCATTT 60.000 57.895 14.77 0.00 0.00 2.32
71 72 2.679716 GCTGGCCTGAGACCCATT 59.320 61.111 14.77 0.00 0.00 3.16
72 73 3.790437 CGCTGGCCTGAGACCCAT 61.790 66.667 14.77 0.00 0.00 4.00
74 75 4.021925 AACGCTGGCCTGAGACCC 62.022 66.667 19.91 0.00 0.00 4.46
75 76 2.743928 CAACGCTGGCCTGAGACC 60.744 66.667 19.91 0.00 0.00 3.85
76 77 2.743928 CCAACGCTGGCCTGAGAC 60.744 66.667 19.91 0.00 35.39 3.36
77 78 4.020617 CCCAACGCTGGCCTGAGA 62.021 66.667 19.91 0.00 41.99 3.27
97 98 4.459331 CATTTGGGTCGGCGCGTG 62.459 66.667 8.43 0.00 0.00 5.34
102 103 3.051392 CTTCCGCATTTGGGTCGGC 62.051 63.158 0.00 0.00 42.65 5.54
103 104 3.051392 GCTTCCGCATTTGGGTCGG 62.051 63.158 0.00 0.00 44.16 4.79
104 105 2.485122 GCTTCCGCATTTGGGTCG 59.515 61.111 0.00 0.00 35.78 4.79
105 106 2.485122 CGCTTCCGCATTTGGGTC 59.515 61.111 0.00 0.00 35.30 4.46
106 107 3.061848 CCGCTTCCGCATTTGGGT 61.062 61.111 0.00 0.00 35.30 4.51
107 108 3.825611 CCCGCTTCCGCATTTGGG 61.826 66.667 0.00 0.00 35.30 4.12
108 109 4.496927 GCCCGCTTCCGCATTTGG 62.497 66.667 0.00 0.00 35.30 3.28
109 110 2.941964 GATGCCCGCTTCCGCATTTG 62.942 60.000 0.00 0.00 45.52 2.32
110 111 2.755469 ATGCCCGCTTCCGCATTT 60.755 55.556 0.00 0.00 43.05 2.32
111 112 3.211963 GATGCCCGCTTCCGCATT 61.212 61.111 0.00 0.00 45.52 3.56
122 123 3.771160 AGACGGACACGGATGCCC 61.771 66.667 0.00 0.00 46.48 5.36
123 124 2.509336 CAGACGGACACGGATGCC 60.509 66.667 0.00 0.00 46.48 4.40
124 125 2.509336 CCAGACGGACACGGATGC 60.509 66.667 0.00 0.00 46.48 3.91
125 126 2.509336 GCCAGACGGACACGGATG 60.509 66.667 0.00 0.00 46.48 3.51
126 127 3.771160 GGCCAGACGGACACGGAT 61.771 66.667 0.00 0.00 46.48 4.18
137 138 4.323477 CCGTTTGGGTCGGCCAGA 62.323 66.667 9.07 0.00 41.48 3.86
138 139 4.323477 TCCGTTTGGGTCGGCCAG 62.323 66.667 9.07 0.00 46.49 4.85
139 140 4.629523 GTCCGTTTGGGTCGGCCA 62.630 66.667 9.07 0.00 46.49 5.36
140 141 4.629523 TGTCCGTTTGGGTCGGCC 62.630 66.667 0.00 0.00 46.49 6.13
141 142 1.726533 TTTTGTCCGTTTGGGTCGGC 61.727 55.000 0.00 0.00 46.49 5.54
143 144 1.862411 GCTTTTTGTCCGTTTGGGTCG 60.862 52.381 0.00 0.00 37.00 4.79
144 145 1.847818 GCTTTTTGTCCGTTTGGGTC 58.152 50.000 0.00 0.00 37.00 4.46
145 146 0.101579 CGCTTTTTGTCCGTTTGGGT 59.898 50.000 0.00 0.00 37.00 4.51
146 147 0.596341 CCGCTTTTTGTCCGTTTGGG 60.596 55.000 0.00 0.00 35.24 4.12
147 148 0.382515 TCCGCTTTTTGTCCGTTTGG 59.617 50.000 0.00 0.00 0.00 3.28
148 149 1.472990 GTCCGCTTTTTGTCCGTTTG 58.527 50.000 0.00 0.00 0.00 2.93
149 150 0.028374 CGTCCGCTTTTTGTCCGTTT 59.972 50.000 0.00 0.00 0.00 3.60
150 151 0.810823 TCGTCCGCTTTTTGTCCGTT 60.811 50.000 0.00 0.00 0.00 4.44
151 152 0.810823 TTCGTCCGCTTTTTGTCCGT 60.811 50.000 0.00 0.00 0.00 4.69
152 153 0.305313 TTTCGTCCGCTTTTTGTCCG 59.695 50.000 0.00 0.00 0.00 4.79
153 154 2.031508 TGATTTCGTCCGCTTTTTGTCC 60.032 45.455 0.00 0.00 0.00 4.02
154 155 2.971261 GTGATTTCGTCCGCTTTTTGTC 59.029 45.455 0.00 0.00 0.00 3.18
155 156 2.287368 GGTGATTTCGTCCGCTTTTTGT 60.287 45.455 0.00 0.00 0.00 2.83
156 157 2.315901 GGTGATTTCGTCCGCTTTTTG 58.684 47.619 0.00 0.00 0.00 2.44
157 158 1.069500 CGGTGATTTCGTCCGCTTTTT 60.069 47.619 0.00 0.00 37.90 1.94
158 159 0.515564 CGGTGATTTCGTCCGCTTTT 59.484 50.000 0.00 0.00 37.90 2.27
159 160 0.601841 ACGGTGATTTCGTCCGCTTT 60.602 50.000 11.86 0.00 46.92 3.51
160 161 1.005394 ACGGTGATTTCGTCCGCTT 60.005 52.632 11.86 0.00 46.92 4.68
161 162 2.654877 ACGGTGATTTCGTCCGCT 59.345 55.556 11.86 1.05 46.92 5.52
166 167 0.863144 CAAACGGACGGTGATTTCGT 59.137 50.000 0.00 0.00 44.03 3.85
167 168 0.165079 CCAAACGGACGGTGATTTCG 59.835 55.000 0.00 0.00 0.00 3.46
168 169 0.519961 CCCAAACGGACGGTGATTTC 59.480 55.000 0.00 0.00 0.00 2.17
169 170 0.179012 ACCCAAACGGACGGTGATTT 60.179 50.000 0.00 0.00 34.64 2.17
170 171 0.604511 GACCCAAACGGACGGTGATT 60.605 55.000 0.00 0.00 34.64 2.57
171 172 1.004200 GACCCAAACGGACGGTGAT 60.004 57.895 0.00 0.00 34.64 3.06
172 173 2.422591 GACCCAAACGGACGGTGA 59.577 61.111 0.00 0.00 34.64 4.02
173 174 3.039588 CGACCCAAACGGACGGTG 61.040 66.667 0.00 0.00 44.72 4.94
186 187 1.883021 CAACTTCAATGGGCCGACC 59.117 57.895 0.00 0.00 40.81 4.79
187 188 1.212751 GCAACTTCAATGGGCCGAC 59.787 57.895 0.00 0.00 0.00 4.79
188 189 0.960364 GAGCAACTTCAATGGGCCGA 60.960 55.000 0.00 0.00 0.00 5.54
189 190 0.962356 AGAGCAACTTCAATGGGCCG 60.962 55.000 0.00 0.00 0.00 6.13
190 191 1.260544 AAGAGCAACTTCAATGGGCC 58.739 50.000 0.00 0.00 32.91 5.80
191 192 2.819608 TGTAAGAGCAACTTCAATGGGC 59.180 45.455 0.00 0.00 39.72 5.36
192 193 4.676196 GCATGTAAGAGCAACTTCAATGGG 60.676 45.833 0.00 0.00 39.72 4.00
193 194 4.082625 TGCATGTAAGAGCAACTTCAATGG 60.083 41.667 0.00 0.00 39.72 3.16
194 195 4.855388 GTGCATGTAAGAGCAACTTCAATG 59.145 41.667 0.00 6.74 43.20 2.82
195 196 4.520111 TGTGCATGTAAGAGCAACTTCAAT 59.480 37.500 0.00 0.00 43.20 2.57
196 197 3.882288 TGTGCATGTAAGAGCAACTTCAA 59.118 39.130 0.00 0.00 43.20 2.69
197 198 3.250762 GTGTGCATGTAAGAGCAACTTCA 59.749 43.478 0.00 0.60 43.20 3.02
198 199 3.250762 TGTGTGCATGTAAGAGCAACTTC 59.749 43.478 0.00 0.00 43.20 3.01
199 200 3.003689 GTGTGTGCATGTAAGAGCAACTT 59.996 43.478 0.00 2.10 43.20 2.66
200 201 2.549754 GTGTGTGCATGTAAGAGCAACT 59.450 45.455 0.00 0.00 43.20 3.16
201 202 2.290367 TGTGTGTGCATGTAAGAGCAAC 59.710 45.455 0.00 0.00 43.20 4.17
202 203 2.549329 CTGTGTGTGCATGTAAGAGCAA 59.451 45.455 0.00 0.00 43.20 3.91
203 204 2.145536 CTGTGTGTGCATGTAAGAGCA 58.854 47.619 0.00 0.00 38.65 4.26
204 205 2.146342 ACTGTGTGTGCATGTAAGAGC 58.854 47.619 0.00 0.00 0.00 4.09
205 206 3.392882 TGACTGTGTGTGCATGTAAGAG 58.607 45.455 0.00 0.00 0.00 2.85
206 207 3.467374 TGACTGTGTGTGCATGTAAGA 57.533 42.857 0.00 0.00 0.00 2.10
221 224 5.102313 TGCGTGTGTTTATAGAGATGACTG 58.898 41.667 0.00 0.00 0.00 3.51
228 231 6.641176 TTGTACATGCGTGTGTTTATAGAG 57.359 37.500 21.92 0.00 39.39 2.43
229 232 7.332182 TGAATTGTACATGCGTGTGTTTATAGA 59.668 33.333 21.92 0.00 39.39 1.98
232 235 6.083630 GTGAATTGTACATGCGTGTGTTTAT 58.916 36.000 21.92 6.86 39.39 1.40
234 237 4.286910 GTGAATTGTACATGCGTGTGTTT 58.713 39.130 21.92 9.20 39.39 2.83
237 240 2.483877 AGGTGAATTGTACATGCGTGTG 59.516 45.455 21.92 1.66 39.39 3.82
238 241 2.742053 GAGGTGAATTGTACATGCGTGT 59.258 45.455 17.19 17.19 42.39 4.49
242 245 5.447818 GCTTGTAGAGGTGAATTGTACATGC 60.448 44.000 0.00 0.00 37.50 4.06
246 249 4.392138 GGTGCTTGTAGAGGTGAATTGTAC 59.608 45.833 0.00 0.00 0.00 2.90
247 250 4.286032 AGGTGCTTGTAGAGGTGAATTGTA 59.714 41.667 0.00 0.00 0.00 2.41
250 253 4.327680 GAAGGTGCTTGTAGAGGTGAATT 58.672 43.478 0.00 0.00 0.00 2.17
253 256 1.272490 CGAAGGTGCTTGTAGAGGTGA 59.728 52.381 0.00 0.00 0.00 4.02
265 268 1.134848 AGCTCAATCTCTCGAAGGTGC 60.135 52.381 0.00 0.00 0.00 5.01
279 282 4.037327 CGATCTCAAGATCTACCAGCTCAA 59.963 45.833 15.96 0.00 46.58 3.02
285 288 5.888724 ACTTCTTCGATCTCAAGATCTACCA 59.111 40.000 15.96 0.00 46.58 3.25
393 396 9.933723 CTTGAATTGGAGGAAACATAAATCTTT 57.066 29.630 0.00 0.00 0.00 2.52
394 397 8.037166 GCTTGAATTGGAGGAAACATAAATCTT 58.963 33.333 0.00 0.00 0.00 2.40
395 398 7.364144 GGCTTGAATTGGAGGAAACATAAATCT 60.364 37.037 0.00 0.00 0.00 2.40
396 399 6.758416 GGCTTGAATTGGAGGAAACATAAATC 59.242 38.462 0.00 0.00 0.00 2.17
419 422 1.159285 GGCAAATTTGGAGCAAAGGC 58.841 50.000 19.47 1.76 36.76 4.35
420 423 2.419667 CTGGCAAATTTGGAGCAAAGG 58.580 47.619 19.47 0.00 36.76 3.11
421 424 2.419667 CCTGGCAAATTTGGAGCAAAG 58.580 47.619 19.47 7.03 36.76 2.77
443 470 2.158623 AGAGGTTCACATTCACTGGCAA 60.159 45.455 0.00 0.00 0.00 4.52
450 477 6.312141 TGGATTATCAGAGGTTCACATTCA 57.688 37.500 0.00 0.00 0.00 2.57
451 478 6.238593 GCTTGGATTATCAGAGGTTCACATTC 60.239 42.308 0.00 0.00 0.00 2.67
452 479 5.591877 GCTTGGATTATCAGAGGTTCACATT 59.408 40.000 0.00 0.00 0.00 2.71
453 480 5.104193 AGCTTGGATTATCAGAGGTTCACAT 60.104 40.000 0.00 0.00 0.00 3.21
454 481 4.225942 AGCTTGGATTATCAGAGGTTCACA 59.774 41.667 0.00 0.00 0.00 3.58
502 529 2.852413 CGTAGCGTACTGACTTTGGATG 59.148 50.000 0.00 0.00 0.00 3.51
574 601 4.394712 CTCGCTGTGGTCCCACCC 62.395 72.222 13.70 4.37 45.63 4.61
690 717 3.150767 CTCTAGATTACTCCCGAGGGTG 58.849 54.545 8.20 8.39 36.47 4.61
708 735 1.469308 CTTGTCGGCGTCTAGAACTCT 59.531 52.381 6.85 0.00 0.00 3.24
711 738 0.243095 ACCTTGTCGGCGTCTAGAAC 59.757 55.000 15.60 2.36 35.61 3.01
712 739 0.242825 CACCTTGTCGGCGTCTAGAA 59.757 55.000 15.60 0.00 35.61 2.10
713 740 1.592400 CCACCTTGTCGGCGTCTAGA 61.592 60.000 15.60 0.00 35.61 2.43
715 742 2.967397 CCACCTTGTCGGCGTCTA 59.033 61.111 6.85 0.00 35.61 2.59
721 748 3.047877 GAACGGCCACCTTGTCGG 61.048 66.667 2.24 0.00 39.35 4.79
722 749 3.047877 GGAACGGCCACCTTGTCG 61.048 66.667 2.24 0.00 36.34 4.35
723 750 0.822121 AAAGGAACGGCCACCTTGTC 60.822 55.000 21.32 2.03 44.44 3.18
724 751 1.106944 CAAAGGAACGGCCACCTTGT 61.107 55.000 21.32 11.87 44.44 3.16
725 752 1.106944 ACAAAGGAACGGCCACCTTG 61.107 55.000 21.32 17.50 44.44 3.61
727 754 0.396556 AAACAAAGGAACGGCCACCT 60.397 50.000 2.24 5.31 40.02 4.00
728 755 0.462375 AAAACAAAGGAACGGCCACC 59.538 50.000 2.24 2.58 40.02 4.61
729 756 1.537348 GGAAAACAAAGGAACGGCCAC 60.537 52.381 2.24 0.00 40.02 5.01
730 757 0.747852 GGAAAACAAAGGAACGGCCA 59.252 50.000 2.24 0.00 40.02 5.36
768 817 0.625980 TGGCCCTTGTCATATCCCCA 60.626 55.000 0.00 0.00 0.00 4.96
774 823 1.843206 TGCAGTATGGCCCTTGTCATA 59.157 47.619 0.00 0.00 38.02 2.15
836 897 3.493350 GCCGTCATGGACTCATCATACTT 60.493 47.826 0.00 0.00 42.00 2.24
1165 1233 5.267587 TCTCTGATGAAATGTGGAGAGAGA 58.732 41.667 0.00 0.00 32.84 3.10
1168 1236 4.571580 GCTTCTCTGATGAAATGTGGAGAG 59.428 45.833 0.00 0.00 32.57 3.20
1171 1239 4.224594 AGAGCTTCTCTGATGAAATGTGGA 59.775 41.667 0.00 0.00 39.62 4.02
1172 1240 4.515361 AGAGCTTCTCTGATGAAATGTGG 58.485 43.478 0.00 0.00 39.62 4.17
1173 1241 6.497785 AAAGAGCTTCTCTGATGAAATGTG 57.502 37.500 0.00 0.00 40.28 3.21
1190 1262 3.755905 CCCAGAGGAAGAAGAAAAAGAGC 59.244 47.826 0.00 0.00 33.47 4.09
1261 1334 1.818674 GCACCCAAAACCAGGTCATAG 59.181 52.381 0.00 0.00 32.72 2.23
1275 1348 2.693074 GAGAAGAAACCAAAAGCACCCA 59.307 45.455 0.00 0.00 0.00 4.51
1286 1359 5.501156 AGAGAGAGAGAGAGAGAAGAAACC 58.499 45.833 0.00 0.00 0.00 3.27
1287 1360 6.092807 GTGAGAGAGAGAGAGAGAGAAGAAAC 59.907 46.154 0.00 0.00 0.00 2.78
1288 1361 6.173339 GTGAGAGAGAGAGAGAGAGAAGAAA 58.827 44.000 0.00 0.00 0.00 2.52
1289 1362 5.624509 CGTGAGAGAGAGAGAGAGAGAAGAA 60.625 48.000 0.00 0.00 0.00 2.52
1290 1363 4.142160 CGTGAGAGAGAGAGAGAGAGAAGA 60.142 50.000 0.00 0.00 0.00 2.87
1291 1364 4.115516 CGTGAGAGAGAGAGAGAGAGAAG 58.884 52.174 0.00 0.00 0.00 2.85
1292 1365 3.513912 ACGTGAGAGAGAGAGAGAGAGAA 59.486 47.826 0.00 0.00 0.00 2.87
1293 1366 3.096852 ACGTGAGAGAGAGAGAGAGAGA 58.903 50.000 0.00 0.00 0.00 3.10
1294 1367 3.119137 TGACGTGAGAGAGAGAGAGAGAG 60.119 52.174 0.00 0.00 0.00 3.20
1320 1431 0.955919 GAAACCGCCTGCTTAGTGCT 60.956 55.000 0.00 0.00 43.37 4.40
1321 1432 1.234615 TGAAACCGCCTGCTTAGTGC 61.235 55.000 0.00 0.00 43.25 4.40
1322 1433 1.131126 CATGAAACCGCCTGCTTAGTG 59.869 52.381 0.00 0.00 0.00 2.74
1323 1434 1.271379 ACATGAAACCGCCTGCTTAGT 60.271 47.619 0.00 0.00 0.00 2.24
1324 1435 1.453155 ACATGAAACCGCCTGCTTAG 58.547 50.000 0.00 0.00 0.00 2.18
1325 1436 1.810151 GAACATGAAACCGCCTGCTTA 59.190 47.619 0.00 0.00 0.00 3.09
1326 1437 0.598065 GAACATGAAACCGCCTGCTT 59.402 50.000 0.00 0.00 0.00 3.91
1383 1494 5.139727 TGAGATTTGAGAAAGAAGGGCAAA 58.860 37.500 0.00 0.00 33.59 3.68
1384 1495 4.728772 TGAGATTTGAGAAAGAAGGGCAA 58.271 39.130 0.00 0.00 0.00 4.52
1388 1499 4.154918 CCCGTTGAGATTTGAGAAAGAAGG 59.845 45.833 0.00 0.00 0.00 3.46
1389 1500 4.997395 TCCCGTTGAGATTTGAGAAAGAAG 59.003 41.667 0.00 0.00 0.00 2.85
1423 1534 0.457337 GGAAGCGAGGCATTTGCAAG 60.457 55.000 0.00 0.00 44.36 4.01
1466 1577 4.821805 AGCTTCGTCAGAAATTTTCTTGGA 59.178 37.500 8.95 2.39 38.11 3.53
1467 1578 5.113502 AGCTTCGTCAGAAATTTTCTTGG 57.886 39.130 8.95 0.01 38.11 3.61
1468 1579 5.751680 TGAGCTTCGTCAGAAATTTTCTTG 58.248 37.500 8.95 5.76 38.11 3.02
1469 1580 5.529060 ACTGAGCTTCGTCAGAAATTTTCTT 59.471 36.000 8.95 0.00 46.02 2.52
1551 1663 3.449737 CGGTACTGTTGGAATAGGAAGGA 59.550 47.826 0.00 0.00 0.00 3.36
1552 1664 3.793559 CGGTACTGTTGGAATAGGAAGG 58.206 50.000 0.00 0.00 0.00 3.46
1553 1665 3.195661 GCGGTACTGTTGGAATAGGAAG 58.804 50.000 3.10 0.00 0.00 3.46
1554 1666 2.417651 CGCGGTACTGTTGGAATAGGAA 60.418 50.000 0.00 0.00 0.00 3.36
1651 1766 3.461378 TCCCAAGGTGCTACTAGTACA 57.539 47.619 0.00 0.00 32.12 2.90
1658 1773 3.745975 GCAAAAATTTCCCAAGGTGCTAC 59.254 43.478 0.00 0.00 0.00 3.58
1674 1789 0.164217 GTACGTCGGATGCGCAAAAA 59.836 50.000 17.11 0.00 0.00 1.94
1716 1831 5.527582 CGTCTAGATCTATTTTTGGTTGGGG 59.472 44.000 2.11 0.00 0.00 4.96
1720 1835 6.070424 TGGGACGTCTAGATCTATTTTTGGTT 60.070 38.462 16.46 0.00 0.00 3.67
1794 1909 2.128367 AAACAAAATGGCCGTTCGAC 57.872 45.000 11.51 0.00 0.00 4.20
1863 1978 0.874175 TGGTCTTCGTGTCTTGTGCG 60.874 55.000 0.00 0.00 0.00 5.34
1991 2170 4.926238 CACCAGAAAGCGGATAATAGCTAG 59.074 45.833 0.00 0.00 43.78 3.42
2068 2247 1.268352 TGTTGAAACATTAGCACCGCC 59.732 47.619 0.00 0.00 33.17 6.13
2386 2576 1.085091 CTGTTCTCCATCACTGCTGC 58.915 55.000 0.00 0.00 0.00 5.25
2471 2661 9.765295 AGGAAAAGGAAAGATGTAGTAGTAGTA 57.235 33.333 0.00 0.00 0.00 1.82
2472 2662 8.667592 AGGAAAAGGAAAGATGTAGTAGTAGT 57.332 34.615 0.00 0.00 0.00 2.73
2473 2663 9.945904 AAAGGAAAAGGAAAGATGTAGTAGTAG 57.054 33.333 0.00 0.00 0.00 2.57
2573 2763 5.189736 AGAAAACAGACAGCTCCCACATATA 59.810 40.000 0.00 0.00 0.00 0.86
2580 2770 2.849294 AGAGAAAACAGACAGCTCCC 57.151 50.000 0.00 0.00 0.00 4.30
2693 2885 3.435105 AGCTTGTCTCTTGCTATCTCG 57.565 47.619 0.00 0.00 35.05 4.04
2860 3053 8.812972 GTCAAAAAGGGGGAAATAACTTATCTT 58.187 33.333 0.00 0.00 0.00 2.40
2868 3061 3.574826 CCGTGTCAAAAAGGGGGAAATAA 59.425 43.478 0.00 0.00 0.00 1.40
2874 3067 1.404843 TTTCCGTGTCAAAAAGGGGG 58.595 50.000 0.00 0.00 0.00 5.40
2875 3068 3.528597 TTTTTCCGTGTCAAAAAGGGG 57.471 42.857 0.00 0.00 30.84 4.79
2897 3091 2.097466 GTCAAAATGACCGCCATTCGAT 59.903 45.455 0.00 0.00 44.28 3.59
2905 3099 4.742438 TCTAAGTTGTCAAAATGACCGC 57.258 40.909 7.94 1.57 46.40 5.68
2919 3113 6.426646 AGTCAGTTCACCAGAATCTAAGTT 57.573 37.500 0.00 0.00 35.92 2.66
2938 3132 4.832823 TCGAAGGATGCCAGATATAAGTCA 59.167 41.667 0.00 0.00 0.00 3.41
2951 3145 4.514441 AGATCATTGTGAATCGAAGGATGC 59.486 41.667 0.00 0.00 31.83 3.91
2977 3171 1.466558 GCAACAGCTAACCTCAGAAGC 59.533 52.381 0.00 0.00 36.48 3.86
3070 3265 6.266103 CCATCCATGTGCACTAAAGGAATTAT 59.734 38.462 19.41 2.46 0.00 1.28
3151 3347 7.308710 GGGACACTAACATAGTCTATCAGTAGC 60.309 44.444 0.00 0.00 36.76 3.58
3466 3868 4.014406 GGGCTTTCCTCCTATTCGAAAAA 58.986 43.478 0.00 0.00 0.00 1.94
3467 3869 3.617284 GGGCTTTCCTCCTATTCGAAAA 58.383 45.455 0.00 0.00 0.00 2.29
3468 3870 2.092592 GGGGCTTTCCTCCTATTCGAAA 60.093 50.000 0.00 0.00 35.33 3.46
3469 3871 1.489230 GGGGCTTTCCTCCTATTCGAA 59.511 52.381 0.00 0.00 35.33 3.71
3470 3872 1.129058 GGGGCTTTCCTCCTATTCGA 58.871 55.000 0.00 0.00 35.33 3.71
3471 3873 3.708013 GGGGCTTTCCTCCTATTCG 57.292 57.895 0.00 0.00 35.33 3.34
3486 3888 2.124320 CAACATGTAGGCCGGGGG 60.124 66.667 2.18 0.00 0.00 5.40
3487 3889 1.451387 GACAACATGTAGGCCGGGG 60.451 63.158 2.18 0.00 0.00 5.73
3488 3890 0.107214 ATGACAACATGTAGGCCGGG 60.107 55.000 2.18 0.00 35.21 5.73
3489 3891 1.299541 GATGACAACATGTAGGCCGG 58.700 55.000 0.00 0.00 36.82 6.13
3490 3892 1.134401 AGGATGACAACATGTAGGCCG 60.134 52.381 0.00 0.00 36.82 6.13
3491 3893 2.684881 CAAGGATGACAACATGTAGGCC 59.315 50.000 0.00 0.00 36.82 5.19
3492 3894 3.347216 ACAAGGATGACAACATGTAGGC 58.653 45.455 0.00 0.00 36.82 3.93
3493 3895 7.630242 AATAACAAGGATGACAACATGTAGG 57.370 36.000 0.00 0.00 36.82 3.18
3496 3898 9.120538 GGTATAATAACAAGGATGACAACATGT 57.879 33.333 0.00 0.00 36.82 3.21
3695 4145 2.209758 TGGGCTATTATGTTGACCCCA 58.790 47.619 0.00 0.00 38.64 4.96
3696 4146 3.525800 ATGGGCTATTATGTTGACCCC 57.474 47.619 0.00 0.00 36.45 4.95
3716 4166 5.650266 TGACTTCAAGCCAACTAAGAAACAA 59.350 36.000 0.00 0.00 0.00 2.83
3727 4177 1.228552 GGCCCTGACTTCAAGCCAA 60.229 57.895 12.89 0.00 42.09 4.52
4241 4704 0.868406 GCTCAAACACAAGTCCCTCG 59.132 55.000 0.00 0.00 0.00 4.63
4246 4709 6.856426 GGTTACAAATAGCTCAAACACAAGTC 59.144 38.462 0.00 0.00 0.00 3.01
4330 4826 2.704572 CTTTAGAACACTGCCTCAGGG 58.295 52.381 0.00 0.00 41.28 4.45
4361 4857 6.178239 ACAAATTATACACGAAGCAACCTC 57.822 37.500 0.00 0.00 0.00 3.85
4372 4868 7.039270 CCAAAAGCCCCTTACAAATTATACAC 58.961 38.462 0.00 0.00 0.00 2.90
4379 4875 3.072330 CCAACCAAAAGCCCCTTACAAAT 59.928 43.478 0.00 0.00 0.00 2.32
4380 4876 2.436173 CCAACCAAAAGCCCCTTACAAA 59.564 45.455 0.00 0.00 0.00 2.83
4381 4877 2.043227 CCAACCAAAAGCCCCTTACAA 58.957 47.619 0.00 0.00 0.00 2.41
4382 4878 1.062810 ACCAACCAAAAGCCCCTTACA 60.063 47.619 0.00 0.00 0.00 2.41
4383 4879 1.712056 ACCAACCAAAAGCCCCTTAC 58.288 50.000 0.00 0.00 0.00 2.34
4384 4880 2.480642 AACCAACCAAAAGCCCCTTA 57.519 45.000 0.00 0.00 0.00 2.69
4386 4882 2.480642 TTAACCAACCAAAAGCCCCT 57.519 45.000 0.00 0.00 0.00 4.79
4387 4883 3.207778 GTTTTAACCAACCAAAAGCCCC 58.792 45.455 0.00 0.00 0.00 5.80
4404 4905 5.350633 CATTGTGTGTCCAGTGAATGTTTT 58.649 37.500 0.00 0.00 0.00 2.43
4413 4914 1.949525 GTTCTGCATTGTGTGTCCAGT 59.050 47.619 0.00 0.00 0.00 4.00
4418 4919 6.207221 TGAAGAATATGTTCTGCATTGTGTGT 59.793 34.615 8.74 0.00 43.63 3.72
4474 4975 3.500982 TACGACAAGTAATTCGGAACGG 58.499 45.455 0.00 0.00 42.34 4.44
4475 4976 3.545078 CCTACGACAAGTAATTCGGAACG 59.455 47.826 0.00 0.00 44.64 3.95
4476 4977 4.488879 ACCTACGACAAGTAATTCGGAAC 58.511 43.478 0.00 0.00 39.63 3.62
4477 4978 4.789012 ACCTACGACAAGTAATTCGGAA 57.211 40.909 0.00 0.00 39.63 4.30
4478 4979 5.221106 CCATACCTACGACAAGTAATTCGGA 60.221 44.000 0.00 0.00 39.63 4.55
4479 4980 4.980434 CCATACCTACGACAAGTAATTCGG 59.020 45.833 0.00 0.00 39.63 4.30
4480 4981 5.824429 TCCATACCTACGACAAGTAATTCG 58.176 41.667 0.00 0.00 41.14 3.34
4481 4982 7.208080 ACATCCATACCTACGACAAGTAATTC 58.792 38.462 0.00 0.00 34.45 2.17
4482 4983 7.120923 ACATCCATACCTACGACAAGTAATT 57.879 36.000 0.00 0.00 34.45 1.40
4483 4984 6.726490 ACATCCATACCTACGACAAGTAAT 57.274 37.500 0.00 0.00 34.45 1.89
4484 4985 7.722728 AGATACATCCATACCTACGACAAGTAA 59.277 37.037 0.00 0.00 34.45 2.24
4485 4986 7.229308 AGATACATCCATACCTACGACAAGTA 58.771 38.462 0.00 0.00 0.00 2.24
4486 4987 6.069331 AGATACATCCATACCTACGACAAGT 58.931 40.000 0.00 0.00 0.00 3.16
4487 4988 6.576662 AGATACATCCATACCTACGACAAG 57.423 41.667 0.00 0.00 0.00 3.16
4488 4989 7.455891 TCTAGATACATCCATACCTACGACAA 58.544 38.462 0.00 0.00 0.00 3.18
4489 4990 7.012661 TCTAGATACATCCATACCTACGACA 57.987 40.000 0.00 0.00 0.00 4.35
4490 4991 7.553402 ACATCTAGATACATCCATACCTACGAC 59.447 40.741 4.54 0.00 0.00 4.34
4491 4992 7.631007 ACATCTAGATACATCCATACCTACGA 58.369 38.462 4.54 0.00 0.00 3.43
4492 4993 7.867305 ACATCTAGATACATCCATACCTACG 57.133 40.000 4.54 0.00 0.00 3.51
4519 5020 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
4520 5021 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
4521 5022 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
4522 5023 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
4523 5024 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
4524 5025 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
4525 5026 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
4526 5027 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
4527 5028 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
4528 5029 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
4529 5030 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
4530 5031 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
4531 5032 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
4532 5033 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
4533 5034 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
4534 5035 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
4535 5036 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
4536 5037 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
4537 5038 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
4538 5039 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
4539 5040 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
4540 5041 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
4541 5042 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
4542 5043 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
4543 5044 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
4544 5045 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
4545 5046 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
4546 5047 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
4547 5048 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
4548 5049 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
4549 5050 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4550 5051 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
4551 5052 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
4552 5053 7.383156 AATATACTCCCTCCGTTCCAAATTA 57.617 36.000 0.00 0.00 0.00 1.40
4553 5054 5.906772 ATATACTCCCTCCGTTCCAAATT 57.093 39.130 0.00 0.00 0.00 1.82
4554 5055 5.221864 GGAATATACTCCCTCCGTTCCAAAT 60.222 44.000 0.00 0.00 35.05 2.32
4555 5056 4.102054 GGAATATACTCCCTCCGTTCCAAA 59.898 45.833 0.00 0.00 35.05 3.28
4556 5057 3.644738 GGAATATACTCCCTCCGTTCCAA 59.355 47.826 0.00 0.00 35.05 3.53
4557 5058 3.236896 GGAATATACTCCCTCCGTTCCA 58.763 50.000 0.00 0.00 35.05 3.53
4558 5059 3.236896 TGGAATATACTCCCTCCGTTCC 58.763 50.000 0.00 0.00 34.22 3.62
4559 5060 3.306156 GCTGGAATATACTCCCTCCGTTC 60.306 52.174 0.00 0.00 34.22 3.95
4560 5061 2.633481 GCTGGAATATACTCCCTCCGTT 59.367 50.000 0.00 0.00 34.22 4.44
4561 5062 2.158295 AGCTGGAATATACTCCCTCCGT 60.158 50.000 0.00 0.00 34.22 4.69
4562 5063 2.530701 AGCTGGAATATACTCCCTCCG 58.469 52.381 0.00 0.00 34.22 4.63
4563 5064 3.558109 GCAAGCTGGAATATACTCCCTCC 60.558 52.174 0.00 0.00 34.22 4.30
4564 5065 3.669536 GCAAGCTGGAATATACTCCCTC 58.330 50.000 0.00 0.00 34.22 4.30
4565 5066 2.037772 CGCAAGCTGGAATATACTCCCT 59.962 50.000 0.00 0.00 34.22 4.20
4566 5067 2.037251 TCGCAAGCTGGAATATACTCCC 59.963 50.000 0.00 0.00 33.44 4.30
4567 5068 3.060602 GTCGCAAGCTGGAATATACTCC 58.939 50.000 0.00 0.00 34.54 3.85
4568 5069 3.060602 GGTCGCAAGCTGGAATATACTC 58.939 50.000 0.00 0.00 37.18 2.59
4569 5070 2.700897 AGGTCGCAAGCTGGAATATACT 59.299 45.455 0.00 0.00 37.18 2.12
4570 5071 3.113260 AGGTCGCAAGCTGGAATATAC 57.887 47.619 0.00 0.00 37.18 1.47
4571 5072 4.526650 TCATAGGTCGCAAGCTGGAATATA 59.473 41.667 0.00 0.00 34.40 0.86
4586 5087 1.670811 CATGGCAACCGTTCATAGGTC 59.329 52.381 0.00 0.00 41.95 3.85
4696 5205 4.619973 TGCTTCATTTGACGCTTCAATTT 58.380 34.783 6.45 0.00 41.50 1.82
5149 5679 1.770658 AGGATGCGAAGGATTGGATCA 59.229 47.619 0.00 0.00 40.04 2.92
5194 5724 0.761323 TGGAGGACCTTCGGTTGACA 60.761 55.000 0.00 0.00 35.25 3.58
5275 5805 2.890109 GAAGCGCAGGCATGGATCG 61.890 63.158 11.47 0.00 43.41 3.69
5378 5908 1.513158 CGCTGTAGCTGTACTGGCT 59.487 57.895 15.73 15.73 43.02 4.75
5419 5949 1.610522 ACACTTGGTGAAGCAATCTGC 59.389 47.619 4.62 0.00 39.30 4.26
5533 6063 2.195567 TGCCACTGCCTGCTTCAAC 61.196 57.895 0.00 0.00 36.33 3.18
6028 6558 0.536006 AGTCTGCCACAAGGTCAAGC 60.536 55.000 0.00 0.00 37.19 4.01
6127 6657 2.605030 CTGTCGCTCTTCTCCTCAAAG 58.395 52.381 0.00 0.00 0.00 2.77
6130 6660 0.895559 TGCTGTCGCTCTTCTCCTCA 60.896 55.000 0.00 0.00 36.97 3.86
6164 6694 2.509336 GCTCGTCCCCATGTCACG 60.509 66.667 0.00 0.00 34.78 4.35
6166 6696 1.522092 GATGCTCGTCCCCATGTCA 59.478 57.895 0.00 0.00 0.00 3.58
6546 7076 2.160721 TAATCTTCGGTCCTGGAGCT 57.839 50.000 22.29 6.34 0.00 4.09
6557 7087 6.063640 TGGCATTCACATTCATAATCTTCG 57.936 37.500 0.00 0.00 0.00 3.79
6712 7246 1.906966 GAATTTCATGCACGTTGCTCG 59.093 47.619 10.54 0.84 45.31 5.03
6889 7426 2.806945 AGAGCCGAATTGGATTTCCA 57.193 45.000 0.00 0.00 45.94 3.53
6927 7464 6.441093 TTTGTAAAATGCATTTTTGGCACA 57.559 29.167 35.18 29.20 45.23 4.57
6929 7466 7.035840 ACATTTGTAAAATGCATTTTTGGCA 57.964 28.000 35.18 27.40 46.66 4.92
6972 7509 3.068024 GTGGGTGTGACAATGAACACATT 59.932 43.478 19.51 0.00 46.83 2.71
7015 7556 5.835819 TCAGTATAAGAGGGGATGAAGTGAG 59.164 44.000 0.00 0.00 0.00 3.51
7066 7611 8.622948 ACAGAGGGAGTACAAAATAAGAAAAG 57.377 34.615 0.00 0.00 0.00 2.27
7213 7759 6.257411 TCTGCAACACCAAATTTGTTACATTG 59.743 34.615 16.73 13.22 35.38 2.82
7249 7795 1.006758 TGTACTCCCTCCGTTCCAGAT 59.993 52.381 0.00 0.00 0.00 2.90
7250 7796 0.406750 TGTACTCCCTCCGTTCCAGA 59.593 55.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.