Multiple sequence alignment - TraesCS5A01G177100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G177100 chr5A 100.000 4537 0 0 1 4537 374475416 374479952 0.000000e+00 8379.0
1 TraesCS5A01G177100 chr5D 92.179 2097 93 30 1942 3982 281894141 281896222 0.000000e+00 2898.0
2 TraesCS5A01G177100 chr5D 88.323 942 60 25 955 1879 281893198 281894106 0.000000e+00 1085.0
3 TraesCS5A01G177100 chr5D 90.210 572 43 7 3978 4537 525595299 525594729 0.000000e+00 734.0
4 TraesCS5A01G177100 chr5D 79.096 177 34 3 7 182 370475336 370475162 7.970000e-23 119.0
5 TraesCS5A01G177100 chr5D 83.193 119 18 1 370 486 34718103 34717985 1.730000e-19 108.0
6 TraesCS5A01G177100 chr5B 94.030 871 47 5 1942 2810 319904906 319905773 0.000000e+00 1315.0
7 TraesCS5A01G177100 chr5B 91.649 922 56 15 942 1848 319903947 319904862 0.000000e+00 1256.0
8 TraesCS5A01G177100 chr5B 91.139 711 38 11 2854 3554 319905785 319906480 0.000000e+00 941.0
9 TraesCS5A01G177100 chr5B 89.778 225 12 3 3698 3915 319908328 319908548 1.240000e-70 278.0
10 TraesCS5A01G177100 chr5B 75.979 562 111 13 5 557 283998609 283998063 7.480000e-68 268.0
11 TraesCS5A01G177100 chr5B 75.497 604 119 18 116 710 501960147 501959564 7.480000e-68 268.0
12 TraesCS5A01G177100 chr5B 73.592 799 162 31 18 809 605318220 605318976 1.250000e-65 261.0
13 TraesCS5A01G177100 chr5B 100.000 62 0 0 3921 3982 319908582 319908643 1.030000e-21 115.0
14 TraesCS5A01G177100 chr5B 97.674 43 1 0 1881 1923 402663496 402663538 1.750000e-09 75.0
15 TraesCS5A01G177100 chr3D 91.413 559 47 1 3980 4537 238592489 238593047 0.000000e+00 765.0
16 TraesCS5A01G177100 chr3D 95.833 48 1 1 1877 1923 391635556 391635509 4.870000e-10 76.8
17 TraesCS5A01G177100 chr3D 97.674 43 1 0 1881 1923 184587291 184587249 1.750000e-09 75.0
18 TraesCS5A01G177100 chr3D 97.619 42 1 0 1882 1923 107462720 107462679 6.300000e-09 73.1
19 TraesCS5A01G177100 chr2D 90.175 570 42 4 3980 4536 638850994 638850426 0.000000e+00 730.0
20 TraesCS5A01G177100 chr2D 74.737 570 105 20 202 766 55437414 55437949 7.640000e-53 219.0
21 TraesCS5A01G177100 chr2D 75.141 531 91 18 241 766 55407071 55407565 1.280000e-50 211.0
22 TraesCS5A01G177100 chr2D 73.891 586 112 20 186 766 55603421 55603970 3.580000e-46 196.0
23 TraesCS5A01G177100 chr7D 91.939 521 40 2 4018 4537 397378057 397377538 0.000000e+00 728.0
24 TraesCS5A01G177100 chr7D 78.189 486 98 7 2 484 472324450 472324930 2.050000e-78 303.0
25 TraesCS5A01G177100 chr7D 73.950 476 98 17 95 559 191465333 191464873 7.810000e-38 169.0
26 TraesCS5A01G177100 chr7D 81.429 140 26 0 2 141 33776345 33776206 1.030000e-21 115.0
27 TraesCS5A01G177100 chr6D 91.939 521 40 2 4018 4537 396929681 396930200 0.000000e+00 728.0
28 TraesCS5A01G177100 chr6D 74.673 841 157 33 1 805 36258234 36257414 5.660000e-84 322.0
29 TraesCS5A01G177100 chr6D 100.000 41 0 0 1883 1923 20145810 20145770 4.870000e-10 76.8
30 TraesCS5A01G177100 chr1D 91.522 519 42 2 4018 4535 236080349 236079832 0.000000e+00 713.0
31 TraesCS5A01G177100 chr1D 76.687 815 157 20 5 809 336347771 336346980 5.430000e-114 422.0
32 TraesCS5A01G177100 chr1D 73.843 432 96 11 24 448 478908257 478907836 6.080000e-34 156.0
33 TraesCS5A01G177100 chr1B 89.483 561 52 6 3980 4537 619091264 619091820 0.000000e+00 702.0
34 TraesCS5A01G177100 chr1B 74.217 830 167 29 1 809 593495115 593495918 2.050000e-78 303.0
35 TraesCS5A01G177100 chr1B 92.857 56 1 3 1878 1930 354222821 354222766 1.350000e-10 78.7
36 TraesCS5A01G177100 chr1B 97.674 43 1 0 1881 1923 491536993 491536951 1.750000e-09 75.0
37 TraesCS5A01G177100 chr2B 88.929 560 60 2 3980 4537 82444357 82444916 0.000000e+00 689.0
38 TraesCS5A01G177100 chr3A 88.810 563 54 7 3978 4537 467412516 467413072 0.000000e+00 682.0
39 TraesCS5A01G177100 chr3A 76.126 222 42 3 370 591 743844463 743844253 6.210000e-19 106.0
40 TraesCS5A01G177100 chr7A 76.015 813 153 28 5 798 486149969 486149180 2.560000e-102 383.0
41 TraesCS5A01G177100 chr7A 80.255 157 31 0 2 158 34134549 34134393 7.970000e-23 119.0
42 TraesCS5A01G177100 chr7A 77.027 222 37 4 370 591 232754214 232754421 1.030000e-21 115.0
43 TraesCS5A01G177100 chr7A 95.556 45 2 0 1883 1927 500130520 500130564 6.300000e-09 73.1
44 TraesCS5A01G177100 chr6B 75.083 903 181 29 5 887 623177317 623178195 9.210000e-102 381.0
45 TraesCS5A01G177100 chr6A 74.822 842 165 30 1 825 558816844 558817655 2.020000e-88 337.0
46 TraesCS5A01G177100 chr6A 76.591 487 105 8 5 486 593429753 593430235 4.500000e-65 259.0
47 TraesCS5A01G177100 chr4D 73.750 800 156 37 18 807 116783936 116784691 9.680000e-67 265.0
48 TraesCS5A01G177100 chr4D 83.607 122 19 1 364 485 459076519 459076639 3.710000e-21 113.0
49 TraesCS5A01G177100 chr4D 83.193 119 18 1 370 486 312143976 312144094 1.730000e-19 108.0
50 TraesCS5A01G177100 chr4D 82.456 114 18 1 370 481 409255625 409255738 1.040000e-16 99.0
51 TraesCS5A01G177100 chr2A 73.606 538 93 21 276 807 660498758 660499252 1.310000e-35 161.0
52 TraesCS5A01G177100 chr7B 78.992 238 39 9 580 809 732333192 732333426 7.860000e-33 152.0
53 TraesCS5A01G177100 chrUn 78.571 238 40 8 580 809 160418004 160417770 3.660000e-31 147.0
54 TraesCS5A01G177100 chrUn 97.619 42 1 0 1882 1923 259667485 259667526 6.300000e-09 73.1
55 TraesCS5A01G177100 chr1A 76.190 210 37 7 364 571 63735295 63735493 1.040000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G177100 chr5A 374475416 374479952 4536 False 8379.0 8379 100.0000 1 4537 1 chr5A.!!$F1 4536
1 TraesCS5A01G177100 chr5D 281893198 281896222 3024 False 1991.5 2898 90.2510 955 3982 2 chr5D.!!$F1 3027
2 TraesCS5A01G177100 chr5D 525594729 525595299 570 True 734.0 734 90.2100 3978 4537 1 chr5D.!!$R3 559
3 TraesCS5A01G177100 chr5B 319903947 319908643 4696 False 781.0 1315 93.3192 942 3982 5 chr5B.!!$F3 3040
4 TraesCS5A01G177100 chr5B 283998063 283998609 546 True 268.0 268 75.9790 5 557 1 chr5B.!!$R1 552
5 TraesCS5A01G177100 chr5B 501959564 501960147 583 True 268.0 268 75.4970 116 710 1 chr5B.!!$R2 594
6 TraesCS5A01G177100 chr5B 605318220 605318976 756 False 261.0 261 73.5920 18 809 1 chr5B.!!$F2 791
7 TraesCS5A01G177100 chr3D 238592489 238593047 558 False 765.0 765 91.4130 3980 4537 1 chr3D.!!$F1 557
8 TraesCS5A01G177100 chr2D 638850426 638850994 568 True 730.0 730 90.1750 3980 4536 1 chr2D.!!$R1 556
9 TraesCS5A01G177100 chr2D 55437414 55437949 535 False 219.0 219 74.7370 202 766 1 chr2D.!!$F2 564
10 TraesCS5A01G177100 chr7D 397377538 397378057 519 True 728.0 728 91.9390 4018 4537 1 chr7D.!!$R3 519
11 TraesCS5A01G177100 chr6D 396929681 396930200 519 False 728.0 728 91.9390 4018 4537 1 chr6D.!!$F1 519
12 TraesCS5A01G177100 chr6D 36257414 36258234 820 True 322.0 322 74.6730 1 805 1 chr6D.!!$R2 804
13 TraesCS5A01G177100 chr1D 236079832 236080349 517 True 713.0 713 91.5220 4018 4535 1 chr1D.!!$R1 517
14 TraesCS5A01G177100 chr1D 336346980 336347771 791 True 422.0 422 76.6870 5 809 1 chr1D.!!$R2 804
15 TraesCS5A01G177100 chr1B 619091264 619091820 556 False 702.0 702 89.4830 3980 4537 1 chr1B.!!$F2 557
16 TraesCS5A01G177100 chr1B 593495115 593495918 803 False 303.0 303 74.2170 1 809 1 chr1B.!!$F1 808
17 TraesCS5A01G177100 chr2B 82444357 82444916 559 False 689.0 689 88.9290 3980 4537 1 chr2B.!!$F1 557
18 TraesCS5A01G177100 chr3A 467412516 467413072 556 False 682.0 682 88.8100 3978 4537 1 chr3A.!!$F1 559
19 TraesCS5A01G177100 chr7A 486149180 486149969 789 True 383.0 383 76.0150 5 798 1 chr7A.!!$R2 793
20 TraesCS5A01G177100 chr6B 623177317 623178195 878 False 381.0 381 75.0830 5 887 1 chr6B.!!$F1 882
21 TraesCS5A01G177100 chr6A 558816844 558817655 811 False 337.0 337 74.8220 1 825 1 chr6A.!!$F1 824
22 TraesCS5A01G177100 chr4D 116783936 116784691 755 False 265.0 265 73.7500 18 807 1 chr4D.!!$F1 789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 988 0.112995 AGCTTGGAGATGCCCAAACA 59.887 50.0 0.0 0.00 44.78 2.83 F
2398 2516 0.105862 CAATCATGGGCCCTGGTGAT 60.106 55.0 25.7 24.46 32.99 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2834 2952 0.105246 AAGCCCAATGGAACCAACCA 60.105 50.0 0.0 0.0 44.41 3.67 R
4010 5905 0.875728 CCAAACGGACAAATACGCCA 59.124 50.0 0.0 0.0 34.47 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 86 1.947456 GGTATTAGAAAAGCGGCAGGG 59.053 52.381 1.45 0.00 0.00 4.45
132 136 1.903183 GAGTACAACCTCTGCCTCCTT 59.097 52.381 0.00 0.00 0.00 3.36
170 174 2.214181 GAGGAGCAACTCGAAGCCGA 62.214 60.000 1.07 0.00 43.35 5.54
172 176 2.048127 AGCAACTCGAAGCCGACC 60.048 61.111 1.07 0.00 40.30 4.79
184 190 4.082523 CCGACCCAGCCATCACGT 62.083 66.667 0.00 0.00 0.00 4.49
227 233 1.589716 GAGGCGTTGCTGCAATCCTT 61.590 55.000 27.91 16.20 32.38 3.36
317 323 2.034812 CCTTTAAGGAGATCGACGAGGG 59.965 54.545 4.75 0.00 37.67 4.30
341 347 6.173339 GGGTGAATGAAGTCTATGACAAGAA 58.827 40.000 0.46 0.00 34.60 2.52
357 370 2.223803 AGAATGAGGACGAGGTCACT 57.776 50.000 0.00 0.00 33.68 3.41
359 372 3.698289 AGAATGAGGACGAGGTCACTAA 58.302 45.455 0.00 0.00 33.68 2.24
486 514 1.299976 CAGTAAGGCCACCACTCCC 59.700 63.158 5.01 0.00 0.00 4.30
487 515 1.923909 AGTAAGGCCACCACTCCCC 60.924 63.158 5.01 0.00 0.00 4.81
488 516 3.006728 TAAGGCCACCACTCCCCG 61.007 66.667 5.01 0.00 0.00 5.73
489 517 3.857521 TAAGGCCACCACTCCCCGT 62.858 63.158 5.01 0.00 0.00 5.28
533 561 4.845580 AGCTTGGCGGGCTCATCG 62.846 66.667 2.38 0.00 34.70 3.84
546 574 1.002359 GCTCATCGTCGTCAGCTGATA 60.002 52.381 21.47 8.75 0.00 2.15
571 599 3.203086 TTGCCGGCAACATGGAGGA 62.203 57.895 37.30 13.21 0.00 3.71
572 600 2.825836 GCCGGCAACATGGAGGAG 60.826 66.667 24.80 0.00 0.00 3.69
577 605 1.349026 CGGCAACATGGAGGAGGATAT 59.651 52.381 0.00 0.00 0.00 1.63
578 606 2.224621 CGGCAACATGGAGGAGGATATT 60.225 50.000 0.00 0.00 0.00 1.28
594 643 0.321741 TATTTTCAGTTCCCGGCGCA 60.322 50.000 10.83 0.00 0.00 6.09
705 767 4.759516 TTGCTCCCGTTTAGATGAAAAC 57.240 40.909 0.00 0.00 36.26 2.43
717 779 9.619316 CGTTTAGATGAAAACACATCCAATTTA 57.381 29.630 0.00 0.00 45.20 1.40
825 892 8.682128 TTTCAAAATAAAAGACGGATGTATGC 57.318 30.769 0.00 0.00 0.00 3.14
827 894 6.314152 TCAAAATAAAAGACGGATGTATGCGA 59.686 34.615 12.66 0.00 44.78 5.10
828 895 6.861065 AAATAAAAGACGGATGTATGCGAT 57.139 33.333 12.66 0.00 44.78 4.58
829 896 6.467723 AATAAAAGACGGATGTATGCGATC 57.532 37.500 12.66 6.53 44.78 3.69
830 897 3.452755 AAAGACGGATGTATGCGATCA 57.547 42.857 12.66 0.00 44.78 2.92
831 898 2.423926 AGACGGATGTATGCGATCAC 57.576 50.000 12.66 1.94 44.78 3.06
832 899 1.053048 GACGGATGTATGCGATCACG 58.947 55.000 12.66 0.00 44.78 4.35
833 900 0.318699 ACGGATGTATGCGATCACGG 60.319 55.000 12.66 0.00 44.78 4.94
834 901 0.318699 CGGATGTATGCGATCACGGT 60.319 55.000 0.00 0.00 44.78 4.83
835 902 1.865865 GGATGTATGCGATCACGGTT 58.134 50.000 0.00 0.00 40.15 4.44
836 903 2.606065 CGGATGTATGCGATCACGGTTA 60.606 50.000 0.00 0.00 44.78 2.85
837 904 3.386486 GGATGTATGCGATCACGGTTAA 58.614 45.455 0.00 0.00 40.15 2.01
838 905 3.805422 GGATGTATGCGATCACGGTTAAA 59.195 43.478 0.00 0.00 40.15 1.52
839 906 4.451096 GGATGTATGCGATCACGGTTAAAT 59.549 41.667 0.00 0.00 40.15 1.40
840 907 4.787381 TGTATGCGATCACGGTTAAATG 57.213 40.909 0.00 0.00 40.15 2.32
841 908 4.434520 TGTATGCGATCACGGTTAAATGA 58.565 39.130 0.00 0.00 40.15 2.57
842 909 3.944422 ATGCGATCACGGTTAAATGAC 57.056 42.857 0.00 0.00 40.15 3.06
843 910 2.004017 TGCGATCACGGTTAAATGACC 58.996 47.619 0.00 0.00 40.15 4.02
844 911 2.004017 GCGATCACGGTTAAATGACCA 58.996 47.619 0.00 0.00 39.78 4.02
845 912 2.030457 GCGATCACGGTTAAATGACCAG 59.970 50.000 0.00 0.00 39.78 4.00
846 913 2.030457 CGATCACGGTTAAATGACCAGC 59.970 50.000 0.00 0.00 39.78 4.85
847 914 2.851263 TCACGGTTAAATGACCAGCT 57.149 45.000 0.00 0.00 39.78 4.24
848 915 2.695359 TCACGGTTAAATGACCAGCTC 58.305 47.619 0.00 0.00 39.78 4.09
849 916 1.737793 CACGGTTAAATGACCAGCTCC 59.262 52.381 0.00 0.00 39.78 4.70
850 917 1.339727 ACGGTTAAATGACCAGCTCCC 60.340 52.381 0.00 0.00 39.78 4.30
851 918 1.379527 GGTTAAATGACCAGCTCCCG 58.620 55.000 0.00 0.00 39.57 5.14
852 919 0.733150 GTTAAATGACCAGCTCCCGC 59.267 55.000 0.00 0.00 0.00 6.13
853 920 0.326595 TTAAATGACCAGCTCCCGCA 59.673 50.000 0.00 0.00 39.10 5.69
854 921 0.326595 TAAATGACCAGCTCCCGCAA 59.673 50.000 0.00 0.00 39.10 4.85
855 922 1.244019 AAATGACCAGCTCCCGCAAC 61.244 55.000 0.00 0.00 39.10 4.17
856 923 3.628646 ATGACCAGCTCCCGCAACC 62.629 63.158 0.00 0.00 39.10 3.77
860 927 4.988598 CAGCTCCCGCAACCGTGT 62.989 66.667 0.00 0.00 39.10 4.49
861 928 4.681978 AGCTCCCGCAACCGTGTC 62.682 66.667 0.00 0.00 39.10 3.67
863 930 4.308458 CTCCCGCAACCGTGTCCA 62.308 66.667 0.00 0.00 0.00 4.02
864 931 3.818121 CTCCCGCAACCGTGTCCAA 62.818 63.158 0.00 0.00 0.00 3.53
865 932 3.353836 CCCGCAACCGTGTCCAAG 61.354 66.667 0.00 0.00 0.00 3.61
866 933 3.353836 CCGCAACCGTGTCCAAGG 61.354 66.667 0.00 0.00 35.99 3.61
867 934 2.280524 CGCAACCGTGTCCAAGGA 60.281 61.111 6.25 0.00 33.97 3.36
868 935 2.604174 CGCAACCGTGTCCAAGGAC 61.604 63.158 12.30 12.30 44.77 3.85
876 943 2.671682 GTCCAAGGACAGAGCCCC 59.328 66.667 14.19 0.00 44.02 5.80
877 944 3.003173 TCCAAGGACAGAGCCCCG 61.003 66.667 0.00 0.00 0.00 5.73
878 945 4.101448 CCAAGGACAGAGCCCCGG 62.101 72.222 0.00 0.00 0.00 5.73
879 946 3.322466 CAAGGACAGAGCCCCGGT 61.322 66.667 0.00 0.00 0.00 5.28
880 947 3.003763 AAGGACAGAGCCCCGGTC 61.004 66.667 0.00 0.00 38.93 4.79
898 965 2.355837 CGCGGACGGATATGGTGG 60.356 66.667 0.00 0.00 34.97 4.61
899 966 2.030562 GCGGACGGATATGGTGGG 59.969 66.667 0.00 0.00 0.00 4.61
900 967 2.803817 GCGGACGGATATGGTGGGT 61.804 63.158 0.00 0.00 0.00 4.51
901 968 1.366366 CGGACGGATATGGTGGGTC 59.634 63.158 0.00 0.00 0.00 4.46
902 969 1.396607 CGGACGGATATGGTGGGTCA 61.397 60.000 0.00 0.00 0.00 4.02
903 970 0.393077 GGACGGATATGGTGGGTCAG 59.607 60.000 0.00 0.00 0.00 3.51
904 971 0.249911 GACGGATATGGTGGGTCAGC 60.250 60.000 0.00 0.00 0.00 4.26
905 972 0.691078 ACGGATATGGTGGGTCAGCT 60.691 55.000 0.00 0.00 32.61 4.24
906 973 0.469917 CGGATATGGTGGGTCAGCTT 59.530 55.000 0.00 0.00 32.61 3.74
907 974 1.811558 CGGATATGGTGGGTCAGCTTG 60.812 57.143 0.00 0.00 32.61 4.01
908 975 1.477558 GGATATGGTGGGTCAGCTTGG 60.478 57.143 0.00 0.00 32.61 3.61
909 976 1.490490 GATATGGTGGGTCAGCTTGGA 59.510 52.381 0.00 0.00 32.61 3.53
910 977 0.911769 TATGGTGGGTCAGCTTGGAG 59.088 55.000 0.00 0.00 32.61 3.86
911 978 0.842030 ATGGTGGGTCAGCTTGGAGA 60.842 55.000 0.00 0.00 32.61 3.71
912 979 0.842030 TGGTGGGTCAGCTTGGAGAT 60.842 55.000 0.00 0.00 32.61 2.75
913 980 0.393537 GGTGGGTCAGCTTGGAGATG 60.394 60.000 0.00 0.00 31.83 2.90
914 981 1.028868 GTGGGTCAGCTTGGAGATGC 61.029 60.000 0.00 0.00 30.39 3.91
915 982 1.452833 GGGTCAGCTTGGAGATGCC 60.453 63.158 0.00 0.00 30.39 4.40
916 983 1.452833 GGTCAGCTTGGAGATGCCC 60.453 63.158 0.00 0.00 30.39 5.36
917 984 1.300963 GTCAGCTTGGAGATGCCCA 59.699 57.895 0.00 0.00 30.39 5.36
918 985 0.322816 GTCAGCTTGGAGATGCCCAA 60.323 55.000 0.00 0.00 43.42 4.12
919 986 0.405198 TCAGCTTGGAGATGCCCAAA 59.595 50.000 0.00 0.00 44.78 3.28
920 987 0.529378 CAGCTTGGAGATGCCCAAAC 59.471 55.000 0.00 0.00 44.78 2.93
921 988 0.112995 AGCTTGGAGATGCCCAAACA 59.887 50.000 0.00 0.00 44.78 2.83
922 989 1.188863 GCTTGGAGATGCCCAAACAT 58.811 50.000 0.00 0.00 44.78 2.71
923 990 1.134907 GCTTGGAGATGCCCAAACATG 60.135 52.381 0.00 0.00 44.78 3.21
924 991 2.173519 CTTGGAGATGCCCAAACATGT 58.826 47.619 0.00 0.00 44.78 3.21
925 992 1.838112 TGGAGATGCCCAAACATGTC 58.162 50.000 0.00 0.00 39.09 3.06
926 993 1.075212 TGGAGATGCCCAAACATGTCA 59.925 47.619 0.00 0.00 41.00 3.58
927 994 1.474077 GGAGATGCCCAAACATGTCAC 59.526 52.381 0.00 0.00 41.00 3.67
928 995 2.161855 GAGATGCCCAAACATGTCACA 58.838 47.619 0.00 0.00 39.48 3.58
929 996 1.888512 AGATGCCCAAACATGTCACAC 59.111 47.619 0.00 0.00 0.00 3.82
930 997 0.597568 ATGCCCAAACATGTCACACG 59.402 50.000 0.00 0.00 0.00 4.49
931 998 1.285641 GCCCAAACATGTCACACGG 59.714 57.895 0.00 0.00 0.00 4.94
932 999 1.452145 GCCCAAACATGTCACACGGT 61.452 55.000 0.00 0.00 0.00 4.83
933 1000 1.028905 CCCAAACATGTCACACGGTT 58.971 50.000 0.00 0.00 0.00 4.44
934 1001 1.407258 CCCAAACATGTCACACGGTTT 59.593 47.619 0.00 4.04 31.37 3.27
935 1002 2.458951 CCAAACATGTCACACGGTTTG 58.541 47.619 21.78 21.78 41.50 2.93
936 1003 2.458951 CAAACATGTCACACGGTTTGG 58.541 47.619 21.29 9.13 39.83 3.28
937 1004 1.028905 AACATGTCACACGGTTTGGG 58.971 50.000 0.00 0.00 0.00 4.12
938 1005 0.181587 ACATGTCACACGGTTTGGGA 59.818 50.000 0.00 0.00 34.11 4.37
939 1006 1.313772 CATGTCACACGGTTTGGGAA 58.686 50.000 0.00 0.00 40.26 3.97
940 1007 1.266718 CATGTCACACGGTTTGGGAAG 59.733 52.381 0.00 0.00 40.26 3.46
1052 1119 2.435805 AGTCTGAAGAAACTGACAGGCA 59.564 45.455 7.51 0.00 39.84 4.75
1168 1241 2.165167 CCCTACGCCGACCTATAATCA 58.835 52.381 0.00 0.00 0.00 2.57
1269 1344 1.188863 CAATCCAAAGCCTTCCCAGG 58.811 55.000 0.00 0.00 44.28 4.45
1281 1356 1.486726 CTTCCCAGGCCTACAGGTAAG 59.513 57.143 3.98 1.02 37.57 2.34
1370 1464 2.848562 TTTCGTTCTTGATTCGTCGC 57.151 45.000 0.00 0.00 0.00 5.19
1399 1493 4.744795 TCCTGCTAGAAGAGATTGGTTC 57.255 45.455 0.00 0.00 0.00 3.62
1517 1611 1.024579 CGATCGGGGTTGACTTTGGG 61.025 60.000 7.38 0.00 0.00 4.12
1520 1614 2.603473 GGGGTTGACTTTGGGGGC 60.603 66.667 0.00 0.00 0.00 5.80
1522 1616 2.989253 GGTTGACTTTGGGGGCGG 60.989 66.667 0.00 0.00 0.00 6.13
1523 1617 2.114411 GTTGACTTTGGGGGCGGA 59.886 61.111 0.00 0.00 0.00 5.54
1540 1634 0.478507 GGAGGGGGAGAGAGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
1544 1644 1.143073 GGGGGAGAGAGAGAGAGAGAC 59.857 61.905 0.00 0.00 0.00 3.36
1554 1654 4.949856 AGAGAGAGAGAGACAGAACAATCC 59.050 45.833 0.00 0.00 0.00 3.01
1565 1666 4.482990 ACAGAACAATCCCATTCCTGTTT 58.517 39.130 0.00 0.00 32.31 2.83
1593 1694 0.473501 TTTGGGATGCCTTGGCCTTT 60.474 50.000 3.32 0.00 0.00 3.11
1865 1969 6.664428 TCCCGAAGAATATGTACATGATCA 57.336 37.500 18.81 0.00 0.00 2.92
1869 1973 7.442364 CCCGAAGAATATGTACATGATCAAAGT 59.558 37.037 18.81 4.33 0.00 2.66
1895 1999 3.713826 TTTTGTGTACTCCCTCCATCC 57.286 47.619 0.00 0.00 0.00 3.51
1896 2000 1.580059 TTGTGTACTCCCTCCATCCC 58.420 55.000 0.00 0.00 0.00 3.85
1898 2002 0.686769 GTGTACTCCCTCCATCCCGT 60.687 60.000 0.00 0.00 0.00 5.28
1900 2004 1.288633 TGTACTCCCTCCATCCCGTAA 59.711 52.381 0.00 0.00 0.00 3.18
1902 2006 3.140707 TGTACTCCCTCCATCCCGTAATA 59.859 47.826 0.00 0.00 0.00 0.98
1903 2007 3.562108 ACTCCCTCCATCCCGTAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1904 2008 4.687262 ACTCCCTCCATCCCGTAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1905 2009 5.019657 ACTCCCTCCATCCCGTAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1906 2010 5.024118 ACTCCCTCCATCCCGTAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1907 2011 5.222484 ACTCCCTCCATCCCGTAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1908 2012 5.269991 TCCCTCCATCCCGTAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
1909 2013 4.141914 CCCTCCATCCCGTAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
1910 2014 4.440250 CCTCCATCCCGTAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
1913 2017 5.011329 TCCATCCCGTAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
1915 2019 6.204108 CCATCCCGTAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
1916 2020 6.592798 TCCCGTAATATAAGAGCGTTTTTG 57.407 37.500 0.00 0.00 0.00 2.44
1917 2021 6.339730 TCCCGTAATATAAGAGCGTTTTTGA 58.660 36.000 0.00 0.00 0.00 2.69
1918 2022 6.256321 TCCCGTAATATAAGAGCGTTTTTGAC 59.744 38.462 0.00 0.00 0.00 3.18
1920 2024 6.898189 CCGTAATATAAGAGCGTTTTTGACAC 59.102 38.462 0.00 0.00 0.00 3.67
1921 2025 7.201496 CCGTAATATAAGAGCGTTTTTGACACT 60.201 37.037 0.00 0.00 0.00 3.55
1922 2026 8.800972 CGTAATATAAGAGCGTTTTTGACACTA 58.199 33.333 0.00 0.00 0.00 2.74
1928 2032 6.422776 AGAGCGTTTTTGACACTATTATGG 57.577 37.500 0.00 0.00 0.00 2.74
1929 2033 5.354234 AGAGCGTTTTTGACACTATTATGGG 59.646 40.000 0.00 0.00 0.00 4.00
1930 2034 4.398044 AGCGTTTTTGACACTATTATGGGG 59.602 41.667 0.00 0.00 0.00 4.96
1931 2035 4.396790 GCGTTTTTGACACTATTATGGGGA 59.603 41.667 0.00 0.00 0.00 4.81
1932 2036 5.448632 GCGTTTTTGACACTATTATGGGGAG 60.449 44.000 0.00 0.00 0.00 4.30
1933 2037 5.646360 CGTTTTTGACACTATTATGGGGAGT 59.354 40.000 0.00 0.00 0.00 3.85
1934 2038 6.403200 CGTTTTTGACACTATTATGGGGAGTG 60.403 42.308 0.00 0.00 44.98 3.51
1935 2039 6.381498 TTTTGACACTATTATGGGGAGTGA 57.619 37.500 8.18 0.00 42.65 3.41
1936 2040 5.614324 TTGACACTATTATGGGGAGTGAG 57.386 43.478 8.18 0.00 42.65 3.51
1937 2041 4.620723 TGACACTATTATGGGGAGTGAGT 58.379 43.478 8.18 0.00 42.65 3.41
1938 2042 5.773091 TGACACTATTATGGGGAGTGAGTA 58.227 41.667 8.18 0.00 42.65 2.59
1939 2043 5.833667 TGACACTATTATGGGGAGTGAGTAG 59.166 44.000 8.18 0.00 42.65 2.57
1940 2044 5.778542 ACACTATTATGGGGAGTGAGTAGT 58.221 41.667 8.18 0.00 42.65 2.73
1941 2045 6.203072 ACACTATTATGGGGAGTGAGTAGTT 58.797 40.000 8.18 0.00 42.65 2.24
1942 2046 7.359849 ACACTATTATGGGGAGTGAGTAGTTA 58.640 38.462 8.18 0.00 42.65 2.24
1943 2047 8.011290 ACACTATTATGGGGAGTGAGTAGTTAT 58.989 37.037 8.18 0.00 42.65 1.89
1944 2048 8.307483 CACTATTATGGGGAGTGAGTAGTTATG 58.693 40.741 0.00 0.00 42.65 1.90
1945 2049 8.011290 ACTATTATGGGGAGTGAGTAGTTATGT 58.989 37.037 0.00 0.00 0.00 2.29
1946 2050 9.529823 CTATTATGGGGAGTGAGTAGTTATGTA 57.470 37.037 0.00 0.00 0.00 2.29
2021 2126 8.935614 AACTAAGCTGTAAAATAAAAGGGAGT 57.064 30.769 0.00 0.00 0.00 3.85
2283 2401 3.062639 GTGTGTTCAGATATGGCGAACAG 59.937 47.826 10.09 0.00 47.00 3.16
2398 2516 0.105862 CAATCATGGGCCCTGGTGAT 60.106 55.000 25.70 24.46 32.99 3.06
2511 2629 4.218417 GGTGAGCTGGTGTTTGTGATTTAT 59.782 41.667 0.00 0.00 0.00 1.40
2525 2643 8.650714 GTTTGTGATTTATTGCCAATCTCTTTC 58.349 33.333 0.00 0.00 32.63 2.62
2549 2667 2.780993 CTTCGTTGTTGCGAACTGTTT 58.219 42.857 0.00 0.00 44.55 2.83
2583 2701 6.692486 TGATTACTCTTCAGTCTTGACCTTC 58.308 40.000 0.00 0.00 33.62 3.46
2634 2752 6.764085 TGTCTTTAGGAAATTCAAGACGAACA 59.236 34.615 15.34 2.00 45.49 3.18
2636 2754 6.990349 TCTTTAGGAAATTCAAGACGAACAGT 59.010 34.615 0.00 0.00 36.12 3.55
2638 2756 5.674933 AGGAAATTCAAGACGAACAGTTC 57.325 39.130 2.85 2.85 36.12 3.01
2706 2824 5.564550 ACTAGCCATTTCAGTCAGATGTTT 58.435 37.500 0.00 0.00 0.00 2.83
2752 2870 7.148035 TGCTAAATAGAGATGCTTGAATTGCAA 60.148 33.333 0.00 0.00 44.01 4.08
2771 2889 3.859627 GCAATGCACATTCTTCAACAGCT 60.860 43.478 0.00 0.00 0.00 4.24
2834 2952 7.337167 AGAATAGATCTGTCAAACTCAGCAAT 58.663 34.615 5.18 0.00 36.88 3.56
2894 3012 7.433680 AGTTTTGAAGTCAAGAACACAAAAGT 58.566 30.769 15.24 0.00 41.86 2.66
2945 3063 9.554053 ACAGCTTCTATCCTATCAATATTACCT 57.446 33.333 0.00 0.00 0.00 3.08
2947 3065 8.908903 AGCTTCTATCCTATCAATATTACCTCG 58.091 37.037 0.00 0.00 0.00 4.63
2964 3084 7.619964 TTACCTCGGGAAATTCAAATAGAAC 57.380 36.000 0.00 0.00 39.49 3.01
2978 3098 9.778741 ATTCAAATAGAACAACTGTCAAGTAGA 57.221 29.630 0.00 0.00 39.49 2.59
3011 3149 6.696441 TTGAACAATGCTGCATATGTATGA 57.304 33.333 16.58 8.57 35.75 2.15
3019 3157 4.169508 GCTGCATATGTATGACTCTACGG 58.830 47.826 4.29 0.00 35.75 4.02
3286 3424 3.646976 CATGGGCTGATCGCTGCG 61.647 66.667 17.25 17.25 39.59 5.18
3305 3443 1.766143 GAAGATGACCGTGGCATCGC 61.766 60.000 12.32 6.88 45.18 4.58
3374 3512 0.466922 GATGCCCAAGAGACCCCATG 60.467 60.000 0.00 0.00 0.00 3.66
3376 3514 1.379044 GCCCAAGAGACCCCATGTG 60.379 63.158 0.00 0.00 0.00 3.21
3383 3521 0.678048 GAGACCCCATGTGTGGCTTC 60.678 60.000 0.00 0.00 44.62 3.86
3529 3672 3.375922 AGAATTCGTGGTGTTTTCGTTGT 59.624 39.130 0.00 0.00 0.00 3.32
3542 3685 5.644636 TGTTTTCGTTGTTTTCTCCAGTACT 59.355 36.000 0.00 0.00 0.00 2.73
3575 3745 1.958205 GATCCGGATGAAGCAGCGG 60.958 63.158 24.82 0.00 0.00 5.52
3608 3778 1.982395 TGGCTCCAGTGAGTACCCG 60.982 63.158 0.00 0.00 40.95 5.28
3611 3781 1.513158 CTCCAGTGAGTACCCGCAG 59.487 63.158 0.00 0.00 33.70 5.18
3612 3782 2.125512 CCAGTGAGTACCCGCAGC 60.126 66.667 0.00 0.00 0.00 5.25
3619 3790 1.878656 GAGTACCCGCAGCTCAGTGT 61.879 60.000 0.00 0.00 0.00 3.55
3638 3809 4.385405 GCTGCTCGCCTGTGACCT 62.385 66.667 0.00 0.00 0.00 3.85
3662 5495 5.305585 TCTGATGATGATGACATGTGATGG 58.694 41.667 1.15 0.00 36.82 3.51
3670 5503 0.731417 GACATGTGATGGCTGACAGC 59.269 55.000 19.55 19.55 41.46 4.40
3695 5528 0.675633 AAACATGGCACTGGCTTGTC 59.324 50.000 20.29 0.00 43.39 3.18
3728 5588 3.886505 GTCTCACTGATAGGTCCAGTAGG 59.113 52.174 0.00 0.00 42.44 3.18
3729 5589 3.117474 TCTCACTGATAGGTCCAGTAGGG 60.117 52.174 0.00 0.00 42.44 3.53
3730 5590 2.091278 TCACTGATAGGTCCAGTAGGGG 60.091 54.545 0.00 0.00 42.44 4.79
3733 5593 3.140519 ACTGATAGGTCCAGTAGGGGTAG 59.859 52.174 0.00 0.00 42.51 3.18
3758 5618 4.660303 TGCTTTATGGTCCATATGTCCTCT 59.340 41.667 12.50 5.80 0.00 3.69
3861 5728 2.972505 CCAGTGTCGTGTGTGGGC 60.973 66.667 0.00 0.00 0.00 5.36
3905 5772 2.279717 TCCGCGAGAGATGCATGC 60.280 61.111 11.82 11.82 0.00 4.06
4015 5910 3.663202 GTTCCAAACGGATGGCGT 58.337 55.556 4.00 0.00 40.46 5.68
4068 5985 3.312973 ACGTCCGTTCAGTTTTGCATTTA 59.687 39.130 0.00 0.00 0.00 1.40
4104 6021 0.887933 AATGTGCCGACCCATTTCAC 59.112 50.000 0.00 0.00 0.00 3.18
4145 6062 0.826256 AAAAAGGGTCCAAGGCCGAC 60.826 55.000 0.00 0.00 0.00 4.79
4168 6085 1.452651 CCAGCGGCCATGTCTCATT 60.453 57.895 2.24 0.00 0.00 2.57
4169 6086 1.033746 CCAGCGGCCATGTCTCATTT 61.034 55.000 2.24 0.00 0.00 2.32
4221 6138 4.082463 GCCGGTTTCAGAAAATATCACCAA 60.082 41.667 1.90 0.00 0.00 3.67
4362 6286 4.841441 AAAAAGATGGCCCTCGCA 57.159 50.000 0.00 0.00 36.38 5.10
4410 6334 1.660560 GCATGTCGGCCTGCATCTTT 61.661 55.000 12.62 0.00 36.47 2.52
4412 6336 1.203052 CATGTCGGCCTGCATCTTTTT 59.797 47.619 0.00 0.00 0.00 1.94
4441 6365 1.300620 CTCGTCCTTGGCGACACAA 60.301 57.895 0.00 0.00 42.67 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.278574 CCCATGGTAATGTCGACATTGT 58.721 45.455 40.58 25.85 45.34 2.71
66 67 1.376609 CGCCCTGCCGCTTTTCTAAT 61.377 55.000 0.00 0.00 0.00 1.73
87 91 0.038892 CAGCTTGCGCCTGTTGAAAT 60.039 50.000 4.18 0.00 36.60 2.17
111 115 0.173708 GGAGGCAGAGGTTGTACTCG 59.826 60.000 0.00 0.00 42.31 4.18
170 174 4.082523 CCGACGTGATGGCTGGGT 62.083 66.667 0.00 0.00 0.00 4.51
172 176 2.509336 GTCCGACGTGATGGCTGG 60.509 66.667 0.00 0.00 0.00 4.85
184 190 4.077184 GCCCATGTCCACGTCCGA 62.077 66.667 0.00 0.00 0.00 4.55
196 202 3.227276 CGCCTCCTACTCGCCCAT 61.227 66.667 0.00 0.00 0.00 4.00
227 233 1.311859 GATTTCATGGGCGATGCAGA 58.688 50.000 4.42 0.00 31.32 4.26
317 323 5.734720 TCTTGTCATAGACTTCATTCACCC 58.265 41.667 0.00 0.00 33.15 4.61
341 347 2.755655 CTGTTAGTGACCTCGTCCTCAT 59.244 50.000 0.00 0.00 0.00 2.90
433 457 1.982660 CGACCTCCCATGCTCTAGTA 58.017 55.000 0.00 0.00 0.00 1.82
460 484 3.007323 GGCCTTACTGGGTCCCGT 61.007 66.667 2.65 7.02 36.00 5.28
465 489 1.463410 AGTGGTGGCCTTACTGGGT 60.463 57.895 3.32 0.00 36.00 4.51
471 495 3.006728 CGGGGAGTGGTGGCCTTA 61.007 66.667 3.32 0.00 0.00 2.69
495 523 3.728373 CTTCAACGGGGGAGGGGG 61.728 72.222 0.00 0.00 0.00 5.40
496 524 4.426313 GCTTCAACGGGGGAGGGG 62.426 72.222 0.00 0.00 0.00 4.79
497 525 4.426313 GGCTTCAACGGGGGAGGG 62.426 72.222 0.00 0.00 0.00 4.30
500 528 2.434331 CTTGGCTTCAACGGGGGA 59.566 61.111 0.00 0.00 0.00 4.81
502 530 1.903404 AAGCTTGGCTTCAACGGGG 60.903 57.895 0.00 0.00 46.77 5.73
561 589 6.332976 ACTGAAAATATCCTCCTCCATGTT 57.667 37.500 0.00 0.00 0.00 2.71
571 599 2.745152 CGCCGGGAACTGAAAATATCCT 60.745 50.000 2.18 0.00 36.31 3.24
572 600 1.602377 CGCCGGGAACTGAAAATATCC 59.398 52.381 2.18 0.00 36.31 2.59
577 605 2.203224 TGCGCCGGGAACTGAAAA 60.203 55.556 4.18 0.00 36.31 2.29
578 606 2.975799 GTGCGCCGGGAACTGAAA 60.976 61.111 4.18 0.00 36.31 2.69
613 662 0.163788 GACCGTTGACGCATGTTCTG 59.836 55.000 0.00 0.00 38.18 3.02
680 734 4.015872 TCATCTAAACGGGAGCAAACTT 57.984 40.909 0.00 0.00 0.00 2.66
691 745 8.519492 AAATTGGATGTGTTTTCATCTAAACG 57.481 30.769 8.89 0.00 44.15 3.60
733 800 9.817365 CAAATCAGACGGTATTCATTGATATTC 57.183 33.333 0.00 0.00 0.00 1.75
739 806 9.619316 TTTAAACAAATCAGACGGTATTCATTG 57.381 29.630 0.00 0.00 0.00 2.82
799 866 9.301153 GCATACATCCGTCTTTTATTTTGAAAT 57.699 29.630 0.00 0.00 0.00 2.17
809 876 3.555956 GTGATCGCATACATCCGTCTTTT 59.444 43.478 0.16 0.00 0.00 2.27
812 879 1.335051 CGTGATCGCATACATCCGTCT 60.335 52.381 7.12 0.00 0.00 4.18
813 880 1.053048 CGTGATCGCATACATCCGTC 58.947 55.000 7.12 0.00 0.00 4.79
814 881 0.318699 CCGTGATCGCATACATCCGT 60.319 55.000 7.12 0.00 35.54 4.69
815 882 0.318699 ACCGTGATCGCATACATCCG 60.319 55.000 7.12 0.00 35.54 4.18
816 883 1.865865 AACCGTGATCGCATACATCC 58.134 50.000 7.12 0.00 35.54 3.51
817 884 5.176774 TCATTTAACCGTGATCGCATACATC 59.823 40.000 7.12 0.00 35.54 3.06
818 885 5.050363 GTCATTTAACCGTGATCGCATACAT 60.050 40.000 7.12 0.00 35.54 2.29
819 886 4.269123 GTCATTTAACCGTGATCGCATACA 59.731 41.667 7.12 0.00 35.54 2.29
820 887 4.318546 GGTCATTTAACCGTGATCGCATAC 60.319 45.833 7.12 0.00 35.54 2.39
821 888 3.805422 GGTCATTTAACCGTGATCGCATA 59.195 43.478 7.12 0.00 35.54 3.14
822 889 2.612212 GGTCATTTAACCGTGATCGCAT 59.388 45.455 7.12 0.00 35.54 4.73
823 890 2.004017 GGTCATTTAACCGTGATCGCA 58.996 47.619 7.12 0.00 35.54 5.10
824 891 2.004017 TGGTCATTTAACCGTGATCGC 58.996 47.619 0.00 0.00 42.62 4.58
825 892 2.030457 GCTGGTCATTTAACCGTGATCG 59.970 50.000 0.00 0.00 42.62 3.69
826 893 3.270877 AGCTGGTCATTTAACCGTGATC 58.729 45.455 0.00 0.00 42.62 2.92
827 894 3.270877 GAGCTGGTCATTTAACCGTGAT 58.729 45.455 1.28 0.00 42.62 3.06
828 895 2.614481 GGAGCTGGTCATTTAACCGTGA 60.614 50.000 9.30 0.00 42.62 4.35
829 896 1.737793 GGAGCTGGTCATTTAACCGTG 59.262 52.381 9.30 0.00 42.62 4.94
830 897 1.339727 GGGAGCTGGTCATTTAACCGT 60.340 52.381 9.30 0.00 42.62 4.83
831 898 1.379527 GGGAGCTGGTCATTTAACCG 58.620 55.000 9.30 0.00 42.62 4.44
832 899 1.379527 CGGGAGCTGGTCATTTAACC 58.620 55.000 9.30 0.00 39.94 2.85
846 913 3.818121 TTGGACACGGTTGCGGGAG 62.818 63.158 0.00 0.00 0.00 4.30
847 914 3.818121 CTTGGACACGGTTGCGGGA 62.818 63.158 0.00 0.00 0.00 5.14
848 915 3.353836 CTTGGACACGGTTGCGGG 61.354 66.667 0.00 0.00 0.00 6.13
849 916 3.353836 CCTTGGACACGGTTGCGG 61.354 66.667 0.00 0.00 0.00 5.69
850 917 2.280524 TCCTTGGACACGGTTGCG 60.281 61.111 0.00 0.00 0.00 4.85
851 918 1.507141 CTGTCCTTGGACACGGTTGC 61.507 60.000 17.57 0.00 0.00 4.17
852 919 0.105964 TCTGTCCTTGGACACGGTTG 59.894 55.000 17.57 8.67 0.00 3.77
853 920 0.393077 CTCTGTCCTTGGACACGGTT 59.607 55.000 17.57 0.00 0.00 4.44
854 921 2.050269 CTCTGTCCTTGGACACGGT 58.950 57.895 17.57 0.00 0.00 4.83
855 922 1.374758 GCTCTGTCCTTGGACACGG 60.375 63.158 17.57 13.57 0.00 4.94
856 923 1.374758 GGCTCTGTCCTTGGACACG 60.375 63.158 17.57 13.58 0.00 4.49
857 924 1.003233 GGGCTCTGTCCTTGGACAC 60.003 63.158 17.57 8.98 0.00 3.67
858 925 2.224159 GGGGCTCTGTCCTTGGACA 61.224 63.158 19.86 19.86 0.00 4.02
859 926 2.671682 GGGGCTCTGTCCTTGGAC 59.328 66.667 12.54 12.54 0.00 4.02
860 927 3.003173 CGGGGCTCTGTCCTTGGA 61.003 66.667 0.00 0.00 0.00 3.53
861 928 4.101448 CCGGGGCTCTGTCCTTGG 62.101 72.222 0.00 0.00 0.00 3.61
862 929 3.316573 GACCGGGGCTCTGTCCTTG 62.317 68.421 6.32 0.00 0.00 3.61
863 930 3.003763 GACCGGGGCTCTGTCCTT 61.004 66.667 6.32 0.00 0.00 3.36
881 948 2.355837 CCACCATATCCGTCCGCG 60.356 66.667 0.00 0.00 37.95 6.46
882 949 2.030562 CCCACCATATCCGTCCGC 59.969 66.667 0.00 0.00 0.00 5.54
883 950 1.366366 GACCCACCATATCCGTCCG 59.634 63.158 0.00 0.00 0.00 4.79
884 951 0.393077 CTGACCCACCATATCCGTCC 59.607 60.000 0.00 0.00 0.00 4.79
885 952 0.249911 GCTGACCCACCATATCCGTC 60.250 60.000 0.00 0.00 0.00 4.79
886 953 0.691078 AGCTGACCCACCATATCCGT 60.691 55.000 0.00 0.00 0.00 4.69
887 954 0.469917 AAGCTGACCCACCATATCCG 59.530 55.000 0.00 0.00 0.00 4.18
888 955 1.477558 CCAAGCTGACCCACCATATCC 60.478 57.143 0.00 0.00 0.00 2.59
889 956 1.490490 TCCAAGCTGACCCACCATATC 59.510 52.381 0.00 0.00 0.00 1.63
890 957 1.492176 CTCCAAGCTGACCCACCATAT 59.508 52.381 0.00 0.00 0.00 1.78
891 958 0.911769 CTCCAAGCTGACCCACCATA 59.088 55.000 0.00 0.00 0.00 2.74
892 959 0.842030 TCTCCAAGCTGACCCACCAT 60.842 55.000 0.00 0.00 0.00 3.55
893 960 0.842030 ATCTCCAAGCTGACCCACCA 60.842 55.000 0.00 0.00 0.00 4.17
894 961 0.393537 CATCTCCAAGCTGACCCACC 60.394 60.000 0.00 0.00 0.00 4.61
895 962 1.028868 GCATCTCCAAGCTGACCCAC 61.029 60.000 0.00 0.00 0.00 4.61
896 963 1.300963 GCATCTCCAAGCTGACCCA 59.699 57.895 0.00 0.00 0.00 4.51
897 964 1.452833 GGCATCTCCAAGCTGACCC 60.453 63.158 0.00 0.00 34.01 4.46
898 965 1.452833 GGGCATCTCCAAGCTGACC 60.453 63.158 0.00 0.00 31.58 4.02
899 966 0.322816 TTGGGCATCTCCAAGCTGAC 60.323 55.000 0.00 0.00 41.44 3.51
900 967 0.405198 TTTGGGCATCTCCAAGCTGA 59.595 50.000 0.00 0.00 46.19 4.26
901 968 0.529378 GTTTGGGCATCTCCAAGCTG 59.471 55.000 0.00 0.00 46.19 4.24
902 969 0.112995 TGTTTGGGCATCTCCAAGCT 59.887 50.000 10.78 0.00 46.19 3.74
903 970 1.134907 CATGTTTGGGCATCTCCAAGC 60.135 52.381 3.97 3.97 46.19 4.01
904 971 2.165030 GACATGTTTGGGCATCTCCAAG 59.835 50.000 0.00 0.00 46.19 3.61
905 972 2.170166 GACATGTTTGGGCATCTCCAA 58.830 47.619 0.00 0.00 44.29 3.53
906 973 1.075212 TGACATGTTTGGGCATCTCCA 59.925 47.619 0.00 0.00 36.21 3.86
907 974 1.474077 GTGACATGTTTGGGCATCTCC 59.526 52.381 0.00 0.00 0.00 3.71
908 975 2.095059 GTGTGACATGTTTGGGCATCTC 60.095 50.000 0.00 0.00 0.00 2.75
909 976 1.888512 GTGTGACATGTTTGGGCATCT 59.111 47.619 0.00 0.00 0.00 2.90
910 977 1.401409 CGTGTGACATGTTTGGGCATC 60.401 52.381 0.00 0.00 0.00 3.91
911 978 0.597568 CGTGTGACATGTTTGGGCAT 59.402 50.000 0.00 0.00 0.00 4.40
912 979 1.451337 CCGTGTGACATGTTTGGGCA 61.451 55.000 0.00 0.00 0.00 5.36
913 980 1.285641 CCGTGTGACATGTTTGGGC 59.714 57.895 0.00 0.00 0.00 5.36
914 981 1.028905 AACCGTGTGACATGTTTGGG 58.971 50.000 0.00 0.25 0.00 4.12
915 982 2.458951 CAAACCGTGTGACATGTTTGG 58.541 47.619 24.10 5.64 0.00 3.28
916 983 2.458951 CCAAACCGTGTGACATGTTTG 58.541 47.619 24.53 24.53 0.00 2.93
917 984 1.407258 CCCAAACCGTGTGACATGTTT 59.593 47.619 0.00 9.46 0.00 2.83
918 985 1.028905 CCCAAACCGTGTGACATGTT 58.971 50.000 0.00 1.00 0.00 2.71
919 986 0.181587 TCCCAAACCGTGTGACATGT 59.818 50.000 0.00 0.00 0.00 3.21
920 987 1.266718 CTTCCCAAACCGTGTGACATG 59.733 52.381 0.00 0.00 0.00 3.21
921 988 1.133915 ACTTCCCAAACCGTGTGACAT 60.134 47.619 0.00 0.00 0.00 3.06
922 989 0.253610 ACTTCCCAAACCGTGTGACA 59.746 50.000 0.00 0.00 0.00 3.58
923 990 1.332686 GAACTTCCCAAACCGTGTGAC 59.667 52.381 0.00 0.00 0.00 3.67
924 991 1.065345 TGAACTTCCCAAACCGTGTGA 60.065 47.619 0.00 0.00 0.00 3.58
925 992 1.384525 TGAACTTCCCAAACCGTGTG 58.615 50.000 0.00 0.00 0.00 3.82
926 993 2.131776 TTGAACTTCCCAAACCGTGT 57.868 45.000 0.00 0.00 0.00 4.49
927 994 4.839668 TTATTGAACTTCCCAAACCGTG 57.160 40.909 0.00 0.00 0.00 4.94
928 995 5.452216 GGTTTTATTGAACTTCCCAAACCGT 60.452 40.000 0.00 0.00 34.15 4.83
929 996 4.986034 GGTTTTATTGAACTTCCCAAACCG 59.014 41.667 0.00 0.00 34.15 4.44
930 997 5.302360 GGGTTTTATTGAACTTCCCAAACC 58.698 41.667 0.00 0.00 40.58 3.27
931 998 5.163290 TGGGGTTTTATTGAACTTCCCAAAC 60.163 40.000 0.00 0.00 37.77 2.93
932 999 4.969359 TGGGGTTTTATTGAACTTCCCAAA 59.031 37.500 0.00 0.00 37.77 3.28
933 1000 4.557705 TGGGGTTTTATTGAACTTCCCAA 58.442 39.130 0.00 0.00 37.77 4.12
934 1001 4.200447 TGGGGTTTTATTGAACTTCCCA 57.800 40.909 0.00 0.00 38.13 4.37
935 1002 5.247337 TCAATGGGGTTTTATTGAACTTCCC 59.753 40.000 0.00 0.00 39.57 3.97
936 1003 6.353404 TCAATGGGGTTTTATTGAACTTCC 57.647 37.500 0.00 0.00 39.57 3.46
937 1004 8.846943 AAATCAATGGGGTTTTATTGAACTTC 57.153 30.769 0.00 0.00 43.95 3.01
938 1005 8.435982 TGAAATCAATGGGGTTTTATTGAACTT 58.564 29.630 0.00 0.00 43.95 2.66
939 1006 7.972301 TGAAATCAATGGGGTTTTATTGAACT 58.028 30.769 0.00 0.00 43.95 3.01
940 1007 8.614469 TTGAAATCAATGGGGTTTTATTGAAC 57.386 30.769 0.00 0.00 43.95 3.18
982 1049 1.203125 TCCATGGTTGGTTTTCCCTCC 60.203 52.381 12.58 0.00 44.06 4.30
988 1055 5.025453 AGCATCTTATCCATGGTTGGTTTT 58.975 37.500 12.58 0.00 44.06 2.43
1033 1100 2.224378 CCTGCCTGTCAGTTTCTTCAGA 60.224 50.000 0.00 0.00 41.25 3.27
1052 1119 1.148273 TTCAAGCTTGACGTGGCCT 59.852 52.632 28.46 0.00 36.83 5.19
1158 1231 4.446311 GCAGGTGGGAATGTGATTATAGGT 60.446 45.833 0.00 0.00 0.00 3.08
1168 1241 0.257039 GATGGAGCAGGTGGGAATGT 59.743 55.000 0.00 0.00 0.00 2.71
1240 1314 3.075134 AGGCTTTGGATTGTTCTCTCCTT 59.925 43.478 0.00 0.00 32.47 3.36
1269 1344 3.798202 CAGATTGACCTTACCTGTAGGC 58.202 50.000 0.00 0.00 39.32 3.93
1281 1356 7.792374 TCAAAATAGATACAGCAGATTGACC 57.208 36.000 0.00 0.00 0.00 4.02
1370 1464 3.118482 TCTCTTCTAGCAGGAAATGGCAG 60.118 47.826 0.00 0.00 0.00 4.85
1399 1493 1.944024 TGCGCCCAATTAATCCTAACG 59.056 47.619 4.18 0.00 0.00 3.18
1520 1614 1.150536 CTCTCTCTCTCCCCCTCCG 59.849 68.421 0.00 0.00 0.00 4.63
1522 1616 1.421646 CTCTCTCTCTCTCTCCCCCTC 59.578 61.905 0.00 0.00 0.00 4.30
1523 1617 1.010793 TCTCTCTCTCTCTCTCCCCCT 59.989 57.143 0.00 0.00 0.00 4.79
1540 1634 3.944015 CAGGAATGGGATTGTTCTGTCTC 59.056 47.826 0.00 0.00 0.00 3.36
1544 1644 4.813027 CAAACAGGAATGGGATTGTTCTG 58.187 43.478 0.00 0.00 32.97 3.02
1554 1654 0.251742 TCAGGGGCAAACAGGAATGG 60.252 55.000 0.00 0.00 0.00 3.16
1695 1799 2.158449 CCTTTGTGTGACGATGCTTCTC 59.842 50.000 0.00 0.00 0.00 2.87
1705 1809 6.039382 AGACAAAACTTATCCCTTTGTGTGAC 59.961 38.462 4.28 0.00 41.95 3.67
1709 1813 6.294176 CCAGAGACAAAACTTATCCCTTTGTG 60.294 42.308 4.28 0.00 41.95 3.33
1755 1859 2.094390 ACTGTTAAGCACGCCGAATCTA 60.094 45.455 0.00 0.00 0.00 1.98
1765 1869 5.163513 CAAATGGAATGGACTGTTAAGCAC 58.836 41.667 0.00 0.00 0.00 4.40
1879 1983 0.686769 ACGGGATGGAGGGAGTACAC 60.687 60.000 0.00 0.00 0.00 2.90
1880 1984 0.928505 TACGGGATGGAGGGAGTACA 59.071 55.000 0.00 0.00 0.00 2.90
1881 1985 2.077687 TTACGGGATGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
1882 1986 4.687262 ATATTACGGGATGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
1883 1987 3.562108 ATATTACGGGATGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
1884 1988 5.269991 TCTTATATTACGGGATGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
1885 1989 5.269991 CTCTTATATTACGGGATGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
1886 1990 4.141914 GCTCTTATATTACGGGATGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
1887 1991 4.440250 CGCTCTTATATTACGGGATGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
1888 1992 4.158025 ACGCTCTTATATTACGGGATGGAG 59.842 45.833 0.00 0.00 0.00 3.86
1890 1994 4.451629 ACGCTCTTATATTACGGGATGG 57.548 45.455 0.00 0.00 0.00 3.51
1891 1995 6.780706 AAAACGCTCTTATATTACGGGATG 57.219 37.500 0.00 0.00 0.00 3.51
1892 1996 6.987992 TCAAAAACGCTCTTATATTACGGGAT 59.012 34.615 0.00 0.00 0.00 3.85
1893 1997 6.256321 GTCAAAAACGCTCTTATATTACGGGA 59.744 38.462 0.00 0.00 0.00 5.14
1894 1998 6.036300 TGTCAAAAACGCTCTTATATTACGGG 59.964 38.462 0.00 0.00 0.00 5.28
1895 1999 6.898189 GTGTCAAAAACGCTCTTATATTACGG 59.102 38.462 0.00 0.00 35.42 4.02
1896 2000 7.672738 AGTGTCAAAAACGCTCTTATATTACG 58.327 34.615 0.00 0.00 45.69 3.18
1902 2006 8.612619 CCATAATAGTGTCAAAAACGCTCTTAT 58.387 33.333 0.00 0.10 45.69 1.73
1903 2007 7.065324 CCCATAATAGTGTCAAAAACGCTCTTA 59.935 37.037 0.00 0.00 45.69 2.10
1904 2008 6.128007 CCCATAATAGTGTCAAAAACGCTCTT 60.128 38.462 0.00 0.00 45.69 2.85
1905 2009 5.354234 CCCATAATAGTGTCAAAAACGCTCT 59.646 40.000 0.00 0.00 45.69 4.09
1906 2010 5.448632 CCCCATAATAGTGTCAAAAACGCTC 60.449 44.000 0.00 0.00 45.69 5.03
1908 2012 4.396790 TCCCCATAATAGTGTCAAAAACGC 59.603 41.667 0.00 0.00 38.74 4.84
1909 2013 5.646360 ACTCCCCATAATAGTGTCAAAAACG 59.354 40.000 0.00 0.00 0.00 3.60
1910 2014 6.657541 TCACTCCCCATAATAGTGTCAAAAAC 59.342 38.462 0.00 0.00 41.12 2.43
1913 2017 5.487488 ACTCACTCCCCATAATAGTGTCAAA 59.513 40.000 0.00 0.00 41.12 2.69
1915 2019 4.620723 ACTCACTCCCCATAATAGTGTCA 58.379 43.478 0.00 0.00 41.12 3.58
1916 2020 5.834204 ACTACTCACTCCCCATAATAGTGTC 59.166 44.000 0.00 0.00 41.12 3.67
1917 2021 5.778542 ACTACTCACTCCCCATAATAGTGT 58.221 41.667 0.00 0.00 41.12 3.55
1918 2022 6.732896 AACTACTCACTCCCCATAATAGTG 57.267 41.667 0.00 0.00 41.58 2.74
1920 2024 8.423906 ACATAACTACTCACTCCCCATAATAG 57.576 38.462 0.00 0.00 0.00 1.73
1921 2025 9.529823 CTACATAACTACTCACTCCCCATAATA 57.470 37.037 0.00 0.00 0.00 0.98
1922 2026 7.455008 CCTACATAACTACTCACTCCCCATAAT 59.545 40.741 0.00 0.00 0.00 1.28
1923 2027 6.781014 CCTACATAACTACTCACTCCCCATAA 59.219 42.308 0.00 0.00 0.00 1.90
1924 2028 6.103649 TCCTACATAACTACTCACTCCCCATA 59.896 42.308 0.00 0.00 0.00 2.74
1925 2029 5.103215 TCCTACATAACTACTCACTCCCCAT 60.103 44.000 0.00 0.00 0.00 4.00
1926 2030 4.231195 TCCTACATAACTACTCACTCCCCA 59.769 45.833 0.00 0.00 0.00 4.96
1927 2031 4.801164 TCCTACATAACTACTCACTCCCC 58.199 47.826 0.00 0.00 0.00 4.81
1928 2032 6.980416 ATTCCTACATAACTACTCACTCCC 57.020 41.667 0.00 0.00 0.00 4.30
1929 2033 8.697292 AGAAATTCCTACATAACTACTCACTCC 58.303 37.037 0.00 0.00 0.00 3.85
1930 2034 9.738832 GAGAAATTCCTACATAACTACTCACTC 57.261 37.037 0.00 0.00 0.00 3.51
1931 2035 9.256228 TGAGAAATTCCTACATAACTACTCACT 57.744 33.333 0.00 0.00 0.00 3.41
1932 2036 9.303537 GTGAGAAATTCCTACATAACTACTCAC 57.696 37.037 0.00 0.00 41.04 3.51
1933 2037 8.188799 CGTGAGAAATTCCTACATAACTACTCA 58.811 37.037 0.00 0.00 0.00 3.41
1934 2038 8.404000 TCGTGAGAAATTCCTACATAACTACTC 58.596 37.037 0.00 0.00 37.03 2.59
1935 2039 8.289939 TCGTGAGAAATTCCTACATAACTACT 57.710 34.615 0.00 0.00 37.03 2.57
2021 2126 5.941647 TCATTCATGATCTTCTGTCTTTGCA 59.058 36.000 0.00 0.00 0.00 4.08
2058 2163 1.978580 ACCAAGGTTCCGAGTTCTGAT 59.021 47.619 0.00 0.00 0.00 2.90
2283 2401 3.902881 TGAGCTCCTTCTGAATCCTTC 57.097 47.619 12.15 0.00 0.00 3.46
2511 2629 2.479566 AGCGAGAAAGAGATTGGCAA 57.520 45.000 0.68 0.68 0.00 4.52
2549 2667 8.370940 AGACTGAAGAGTAATCATGAGAAAACA 58.629 33.333 0.09 0.00 30.16 2.83
2583 2701 5.405331 TCATCGACTAACAGATCAGTACG 57.595 43.478 0.00 0.00 0.00 3.67
2706 2824 3.751175 GCAGGTGTAGCATGTAACAGAAA 59.249 43.478 2.92 0.00 0.00 2.52
2752 2870 3.319972 ACAAGCTGTTGAAGAATGTGCAT 59.680 39.130 0.00 0.00 37.10 3.96
2771 2889 4.842380 ACTTTACCAGGGAGTAAGCTACAA 59.158 41.667 0.00 0.00 33.89 2.41
2834 2952 0.105246 AAGCCCAATGGAACCAACCA 60.105 50.000 0.00 0.00 44.41 3.67
2941 3059 6.713276 TGTTCTATTTGAATTTCCCGAGGTA 58.287 36.000 0.00 0.00 36.99 3.08
2942 3060 5.566469 TGTTCTATTTGAATTTCCCGAGGT 58.434 37.500 0.00 0.00 36.99 3.85
2943 3061 6.151144 AGTTGTTCTATTTGAATTTCCCGAGG 59.849 38.462 0.00 0.00 36.99 4.63
2944 3062 7.023575 CAGTTGTTCTATTTGAATTTCCCGAG 58.976 38.462 0.00 0.00 36.99 4.63
2945 3063 6.488683 ACAGTTGTTCTATTTGAATTTCCCGA 59.511 34.615 0.00 0.00 36.99 5.14
2947 3065 7.657336 TGACAGTTGTTCTATTTGAATTTCCC 58.343 34.615 0.00 0.00 36.99 3.97
2964 3084 5.830900 GTAGCTGTTCTACTTGACAGTTG 57.169 43.478 0.00 0.00 43.37 3.16
2978 3098 4.794003 GCAGCATTGTTCAAAGTAGCTGTT 60.794 41.667 21.14 0.00 46.96 3.16
3011 3149 4.158764 CAGAAGATTCAGGTTCCGTAGAGT 59.841 45.833 0.00 0.00 0.00 3.24
3019 3157 3.703001 TCCCACAGAAGATTCAGGTTC 57.297 47.619 0.00 0.00 0.00 3.62
3122 3260 4.897051 AGAGTAGGACCTTGGATATGGTT 58.103 43.478 0.00 0.00 34.71 3.67
3286 3424 1.766143 GCGATGCCACGGTCATCTTC 61.766 60.000 14.44 6.48 38.47 2.87
3305 3443 2.657372 GCGACACAGAAGTTCTCTTACG 59.343 50.000 1.26 8.29 33.64 3.18
3374 3512 2.934083 GGTTCAGAGGAAGCCACAC 58.066 57.895 0.00 0.00 43.92 3.82
3383 3521 5.357032 ACACAAGTAAAAACTGGTTCAGAGG 59.643 40.000 1.59 0.00 35.18 3.69
3469 3610 3.967326 TGATACATACAGGTCTTCAGGGG 59.033 47.826 0.00 0.00 0.00 4.79
3513 3656 3.494232 AGAAAACAACGAAAACACCACG 58.506 40.909 0.00 0.00 0.00 4.94
3529 3672 8.519799 ACAAATGAAAAGAGTACTGGAGAAAA 57.480 30.769 0.00 0.00 0.00 2.29
3542 3685 4.402829 TCCGGATCCAACAAATGAAAAGA 58.597 39.130 13.41 0.00 0.00 2.52
3575 3745 3.199764 GCCACAAGCAATTGACCAC 57.800 52.632 10.34 0.00 42.97 4.16
3638 3809 5.763204 CCATCACATGTCATCATCATCAGAA 59.237 40.000 0.00 0.00 31.15 3.02
3662 5495 1.131883 CATGTTTGGCTAGCTGTCAGC 59.868 52.381 17.48 17.48 42.84 4.26
3711 5571 1.938069 ACCCCTACTGGACCTATCAGT 59.062 52.381 0.00 0.00 46.02 3.41
3728 5588 1.211949 TGGACCATAAAGCAGCTACCC 59.788 52.381 0.00 0.00 0.00 3.69
3729 5589 2.710096 TGGACCATAAAGCAGCTACC 57.290 50.000 0.00 0.00 0.00 3.18
3730 5590 5.308825 ACATATGGACCATAAAGCAGCTAC 58.691 41.667 18.10 0.00 29.74 3.58
3733 5593 3.503748 GGACATATGGACCATAAAGCAGC 59.496 47.826 18.10 7.34 29.74 5.25
3758 5618 2.027285 TGCTGCTGTAGAGTAATGCCAA 60.027 45.455 0.00 0.00 0.00 4.52
3905 5772 2.543861 CGTCCTCTGATGGTATTCCGTG 60.544 54.545 0.00 0.00 36.30 4.94
4010 5905 0.875728 CCAAACGGACAAATACGCCA 59.124 50.000 0.00 0.00 34.47 5.69
4046 5963 1.305201 ATGCAAAACTGAACGGACGT 58.695 45.000 0.00 0.00 0.00 4.34
4054 5971 2.227865 GCCGACCTAAATGCAAAACTGA 59.772 45.455 0.00 0.00 0.00 3.41
4104 6021 9.798885 TTTTTATTTAAAAATTGAATGCGGACG 57.201 25.926 4.52 0.00 39.46 4.79
4168 6085 1.887242 GCGCTGATATGGTGCCGAA 60.887 57.895 0.00 0.00 34.55 4.30
4169 6086 2.280119 GCGCTGATATGGTGCCGA 60.280 61.111 0.00 0.00 34.55 5.54
4203 6120 9.695526 CATGAACTTTGGTGATATTTTCTGAAA 57.304 29.630 0.00 0.00 0.00 2.69
4290 6211 2.246739 CGCGATGGCATGGTCGAAT 61.247 57.895 12.75 0.00 40.11 3.34
4362 6286 1.604755 GACGACGAGTGATCTATGGCT 59.395 52.381 0.00 0.00 0.00 4.75
4441 6365 4.849813 TCATGAAGGTGGATCTCAACAT 57.150 40.909 0.00 0.00 34.94 2.71
4467 6391 0.752658 CGAGCATGATGACCAGGGTA 59.247 55.000 0.00 0.00 37.41 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.