Multiple sequence alignment - TraesCS5A01G176500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G176500 chr5A 100.000 1603 0 0 1 1603 371033032 371031430 0.000000e+00 2961.0
1 TraesCS5A01G176500 chr5A 100.000 592 0 0 1887 2478 371031146 371030555 0.000000e+00 1094.0
2 TraesCS5A01G176500 chr5D 88.655 1331 119 14 88 1408 280782235 280783543 0.000000e+00 1592.0
3 TraesCS5A01G176500 chr5D 98.816 591 7 0 1888 2478 280783732 280784322 0.000000e+00 1053.0
4 TraesCS5A01G176500 chr5B 88.363 1332 108 25 88 1408 318399574 318400869 0.000000e+00 1557.0
5 TraesCS5A01G176500 chr5B 95.270 592 12 2 1887 2478 318401057 318401632 0.000000e+00 924.0
6 TraesCS5A01G176500 chr5B 95.652 46 1 1 1407 1451 84936934 84936889 3.420000e-09 73.1
7 TraesCS5A01G176500 chr1B 98.077 52 1 0 1436 1487 86980498 86980447 9.440000e-15 91.6
8 TraesCS5A01G176500 chr7A 94.737 57 3 0 1436 1492 104242244 104242188 3.390000e-14 89.8
9 TraesCS5A01G176500 chr7A 94.737 57 3 0 1436 1492 104277147 104277091 3.390000e-14 89.8
10 TraesCS5A01G176500 chr7D 98.000 50 0 1 1403 1451 99818978 99819027 4.390000e-13 86.1
11 TraesCS5A01G176500 chr7D 91.228 57 4 1 1433 1489 99819070 99819125 2.640000e-10 76.8
12 TraesCS5A01G176500 chr6B 94.545 55 3 0 1433 1487 550372860 550372914 4.390000e-13 86.1
13 TraesCS5A01G176500 chr6B 90.909 44 3 1 1409 1451 135117960 135117917 9.570000e-05 58.4
14 TraesCS5A01G176500 chr2B 94.444 54 3 0 1436 1489 794482990 794482937 1.580000e-12 84.2
15 TraesCS5A01G176500 chr4B 92.727 55 4 0 1436 1490 460845132 460845078 2.040000e-11 80.5
16 TraesCS5A01G176500 chr4B 95.833 48 1 1 1405 1451 460845217 460845170 2.640000e-10 76.8
17 TraesCS5A01G176500 chr3D 95.745 47 0 2 1407 1451 18430129 18430175 9.500000e-10 75.0
18 TraesCS5A01G176500 chr3A 95.745 47 1 1 1405 1450 733616029 733616075 9.500000e-10 75.0
19 TraesCS5A01G176500 chr3A 91.667 48 4 0 1436 1483 697239850 697239803 1.590000e-07 67.6
20 TraesCS5A01G176500 chr3A 93.478 46 2 1 1407 1451 697239941 697239896 1.590000e-07 67.6
21 TraesCS5A01G176500 chr7B 92.000 50 2 2 1403 1451 396905928 396905880 4.420000e-08 69.4
22 TraesCS5A01G176500 chr1A 97.059 34 1 0 27 60 518013282 518013315 9.570000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G176500 chr5A 371030555 371033032 2477 True 2027.5 2961 100.0000 1 2478 2 chr5A.!!$R1 2477
1 TraesCS5A01G176500 chr5D 280782235 280784322 2087 False 1322.5 1592 93.7355 88 2478 2 chr5D.!!$F1 2390
2 TraesCS5A01G176500 chr5B 318399574 318401632 2058 False 1240.5 1557 91.8165 88 2478 2 chr5B.!!$F1 2390

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 994 0.451628 CGCTGTGCTCACAACAATCG 60.452 55.0 4.15 0.48 41.33 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2392 2420 3.306613 TGAGCTCTGTGGATCTGATGAT 58.693 45.455 16.19 0.0 35.26 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.391227 GAGAATACTTTCAACCTGCGC 57.609 47.619 0.00 0.00 34.08 6.09
21 22 2.742053 GAGAATACTTTCAACCTGCGCA 59.258 45.455 10.98 10.98 34.08 6.09
22 23 3.347216 AGAATACTTTCAACCTGCGCAT 58.653 40.909 12.24 0.00 34.08 4.73
23 24 4.513442 AGAATACTTTCAACCTGCGCATA 58.487 39.130 12.24 0.00 34.08 3.14
24 25 4.572389 AGAATACTTTCAACCTGCGCATAG 59.428 41.667 12.24 8.52 34.08 2.23
25 26 2.185004 ACTTTCAACCTGCGCATAGT 57.815 45.000 12.24 9.31 0.00 2.12
26 27 3.328382 ACTTTCAACCTGCGCATAGTA 57.672 42.857 12.24 0.00 0.00 1.82
27 28 3.000727 ACTTTCAACCTGCGCATAGTAC 58.999 45.455 12.24 0.00 0.00 2.73
28 29 2.753055 TTCAACCTGCGCATAGTACA 57.247 45.000 12.24 0.00 0.00 2.90
29 30 2.293677 TCAACCTGCGCATAGTACAG 57.706 50.000 12.24 6.02 0.00 2.74
30 31 1.822371 TCAACCTGCGCATAGTACAGA 59.178 47.619 12.24 8.27 33.10 3.41
31 32 2.430694 TCAACCTGCGCATAGTACAGAT 59.569 45.455 12.24 0.00 33.10 2.90
32 33 3.118775 TCAACCTGCGCATAGTACAGATT 60.119 43.478 12.24 0.00 33.10 2.40
33 34 2.826428 ACCTGCGCATAGTACAGATTG 58.174 47.619 12.24 0.00 33.10 2.67
34 35 2.430694 ACCTGCGCATAGTACAGATTGA 59.569 45.455 12.24 0.00 33.10 2.57
35 36 3.070159 ACCTGCGCATAGTACAGATTGAT 59.930 43.478 12.24 0.00 33.10 2.57
36 37 4.280929 ACCTGCGCATAGTACAGATTGATA 59.719 41.667 12.24 0.00 33.10 2.15
37 38 5.221441 ACCTGCGCATAGTACAGATTGATAA 60.221 40.000 12.24 0.00 33.10 1.75
38 39 5.696270 CCTGCGCATAGTACAGATTGATAAA 59.304 40.000 12.24 0.00 33.10 1.40
39 40 6.369890 CCTGCGCATAGTACAGATTGATAAAT 59.630 38.462 12.24 0.00 33.10 1.40
40 41 7.351414 TGCGCATAGTACAGATTGATAAATC 57.649 36.000 5.66 0.00 0.00 2.17
41 42 7.154656 TGCGCATAGTACAGATTGATAAATCT 58.845 34.615 5.66 0.00 39.96 2.40
42 43 8.303876 TGCGCATAGTACAGATTGATAAATCTA 58.696 33.333 5.66 0.00 37.41 1.98
43 44 9.140286 GCGCATAGTACAGATTGATAAATCTAA 57.860 33.333 4.90 0.00 37.41 2.10
57 58 9.958180 TTGATAAATCTAAGGTCATTCACTTGA 57.042 29.630 0.00 0.00 0.00 3.02
58 59 9.605275 TGATAAATCTAAGGTCATTCACTTGAG 57.395 33.333 0.00 0.00 0.00 3.02
59 60 8.970859 ATAAATCTAAGGTCATTCACTTGAGG 57.029 34.615 0.00 0.00 0.00 3.86
60 61 4.826274 TCTAAGGTCATTCACTTGAGGG 57.174 45.455 0.00 0.00 0.00 4.30
61 62 2.887151 AAGGTCATTCACTTGAGGGG 57.113 50.000 0.00 0.00 0.00 4.79
62 63 2.044793 AGGTCATTCACTTGAGGGGA 57.955 50.000 0.00 0.00 0.00 4.81
63 64 2.348472 AGGTCATTCACTTGAGGGGAA 58.652 47.619 0.00 0.00 0.00 3.97
64 65 2.716424 AGGTCATTCACTTGAGGGGAAA 59.284 45.455 0.00 0.00 0.00 3.13
65 66 3.140144 AGGTCATTCACTTGAGGGGAAAA 59.860 43.478 0.00 0.00 0.00 2.29
66 67 3.895041 GGTCATTCACTTGAGGGGAAAAA 59.105 43.478 0.00 0.00 0.00 1.94
67 68 4.528206 GGTCATTCACTTGAGGGGAAAAAT 59.472 41.667 0.00 0.00 0.00 1.82
68 69 5.012046 GGTCATTCACTTGAGGGGAAAAATT 59.988 40.000 0.00 0.00 0.00 1.82
69 70 6.210584 GGTCATTCACTTGAGGGGAAAAATTA 59.789 38.462 0.00 0.00 0.00 1.40
70 71 7.093333 GGTCATTCACTTGAGGGGAAAAATTAT 60.093 37.037 0.00 0.00 0.00 1.28
71 72 8.314021 GTCATTCACTTGAGGGGAAAAATTATT 58.686 33.333 0.00 0.00 0.00 1.40
72 73 9.540538 TCATTCACTTGAGGGGAAAAATTATTA 57.459 29.630 0.00 0.00 0.00 0.98
128 129 4.335315 CCTACAATCTTATGCGCTTGGAAA 59.665 41.667 9.73 0.00 0.00 3.13
174 175 0.827368 TGTGCGATATACACCAGGCA 59.173 50.000 6.03 0.00 37.22 4.75
212 213 6.363065 AGTGATAACTAGGAGTAATGACCGA 58.637 40.000 0.00 0.00 0.00 4.69
248 249 2.543653 GGCCGATGTGTCATAAAATGGC 60.544 50.000 0.00 0.00 39.21 4.40
300 302 2.953453 TGTGCAGATAGGGGTACGTAT 58.047 47.619 0.00 0.00 0.00 3.06
307 309 5.258841 CAGATAGGGGTACGTATATGTGGA 58.741 45.833 7.89 0.00 33.99 4.02
316 318 1.605457 CGTATATGTGGAGCATGGCGT 60.605 52.381 0.00 0.00 38.47 5.68
347 349 4.746309 AGGCACACCGCATGGCAT 62.746 61.111 0.00 0.00 44.76 4.40
427 431 4.081642 CGAGGGTGTCAGATCCTTTTAAGA 60.082 45.833 0.00 0.00 0.00 2.10
468 472 8.915036 TCCTAGTTGAATAGGATTGACTAGTTC 58.085 37.037 3.24 0.00 45.18 3.01
525 529 3.945285 TCAACAGGGTGTGTCTTCTTTTC 59.055 43.478 0.00 0.00 39.03 2.29
546 550 4.741342 TCCGGAAGATCGTCTCTAAAAAC 58.259 43.478 0.00 0.00 32.41 2.43
553 557 7.363617 GGAAGATCGTCTCTAAAAACCCTCTAA 60.364 40.741 8.59 0.00 32.41 2.10
554 558 7.102847 AGATCGTCTCTAAAAACCCTCTAAG 57.897 40.000 0.00 0.00 30.26 2.18
593 597 9.694137 ACTTAATAATCTTACAATCTAGACGCC 57.306 33.333 0.00 0.00 0.00 5.68
600 604 5.764686 TCTTACAATCTAGACGCCCGTATTA 59.235 40.000 0.00 0.00 0.00 0.98
611 616 2.348218 CGCCCGTATTAATTTCGTGCTC 60.348 50.000 14.10 0.00 0.00 4.26
649 654 1.666888 GCCGGAACACTTGCATTTCAG 60.667 52.381 5.05 0.00 0.00 3.02
651 656 2.811431 CCGGAACACTTGCATTTCAGTA 59.189 45.455 0.00 0.00 0.00 2.74
653 658 4.261405 CCGGAACACTTGCATTTCAGTAAA 60.261 41.667 0.00 0.00 0.00 2.01
692 697 6.749578 CGAGAGATAGTAATCGATTGGATTGG 59.250 42.308 20.87 0.00 44.95 3.16
694 699 5.491982 AGATAGTAATCGATTGGATTGGCC 58.508 41.667 20.87 0.00 44.95 5.36
695 700 3.576078 AGTAATCGATTGGATTGGCCA 57.424 42.857 20.87 0.00 44.95 5.36
723 728 8.673711 GTTTGGTCACTATATTTGTATGAAGCA 58.326 33.333 0.00 0.00 0.00 3.91
734 739 5.590530 TTGTATGAAGCAGGTGTGTTTTT 57.409 34.783 0.00 0.00 0.00 1.94
847 852 4.241681 GTCTACCTTTTCAGTCAGCTCAG 58.758 47.826 0.00 0.00 0.00 3.35
899 904 5.099042 ACCTTTTGTGTGACACTAACTCT 57.901 39.130 17.47 0.00 35.11 3.24
900 905 4.876107 ACCTTTTGTGTGACACTAACTCTG 59.124 41.667 17.47 6.47 35.11 3.35
902 907 5.354234 CCTTTTGTGTGACACTAACTCTGTT 59.646 40.000 17.47 0.00 35.11 3.16
903 908 6.417191 TTTTGTGTGACACTAACTCTGTTC 57.583 37.500 17.47 0.00 35.11 3.18
904 909 4.729227 TGTGTGACACTAACTCTGTTCA 57.271 40.909 17.47 0.00 35.11 3.18
911 916 5.991606 TGACACTAACTCTGTTCATTTCTGG 59.008 40.000 0.00 0.00 0.00 3.86
936 941 1.552337 AGCTGCAGCCGCTATATATGT 59.448 47.619 34.39 9.07 43.38 2.29
949 954 6.709846 CCGCTATATATGTAGTAGTAGGGGTC 59.290 46.154 8.15 0.00 35.30 4.46
951 956 8.646004 CGCTATATATGTAGTAGTAGGGGTCTA 58.354 40.741 8.15 0.00 0.00 2.59
980 985 0.456824 GACGAAGATCGCTGTGCTCA 60.457 55.000 0.00 0.00 45.12 4.26
989 994 0.451628 CGCTGTGCTCACAACAATCG 60.452 55.000 4.15 0.48 41.33 3.34
1015 1020 0.038618 GACAATGGGGAAACAACGCC 60.039 55.000 0.00 0.00 42.15 5.68
1018 1023 0.760945 AATGGGGAAACAACGCCCAA 60.761 50.000 0.00 0.00 46.57 4.12
1038 1043 1.140407 CGCCGTCGATGAGGAAGAAC 61.140 60.000 6.11 0.00 38.10 3.01
1056 1061 2.086054 ACGTTCAGAGGAAGCATGTC 57.914 50.000 0.00 0.00 32.62 3.06
1072 1077 2.435410 TCATGGAGCTGCTGCGTG 60.435 61.111 30.30 30.30 45.42 5.34
1077 1082 2.356793 GAGCTGCTGCGTGTCACT 60.357 61.111 7.01 0.00 45.42 3.41
1081 1086 3.232645 CTGCTGCGTGTCACTGCAC 62.233 63.158 15.39 13.12 37.11 4.57
1089 1094 4.314440 GTCACTGCACGGCCTCCA 62.314 66.667 0.00 0.00 0.00 3.86
1146 1151 4.108570 TCAAGATTGCCCTAGGAAGGTAA 58.891 43.478 11.48 0.00 41.89 2.85
1148 1153 5.014755 TCAAGATTGCCCTAGGAAGGTAAAA 59.985 40.000 11.48 0.00 41.89 1.52
1157 1181 4.457949 CCTAGGAAGGTAAAACAAATGCGT 59.542 41.667 1.05 0.00 38.19 5.24
1158 1182 4.237349 AGGAAGGTAAAACAAATGCGTG 57.763 40.909 0.00 0.00 0.00 5.34
1159 1183 3.634910 AGGAAGGTAAAACAAATGCGTGT 59.365 39.130 0.00 0.00 0.00 4.49
1160 1184 4.822896 AGGAAGGTAAAACAAATGCGTGTA 59.177 37.500 0.00 0.00 0.00 2.90
1161 1185 5.048991 AGGAAGGTAAAACAAATGCGTGTAG 60.049 40.000 0.00 0.00 0.00 2.74
1162 1186 5.049267 GGAAGGTAAAACAAATGCGTGTAGA 60.049 40.000 0.00 0.00 0.00 2.59
1163 1187 5.352643 AGGTAAAACAAATGCGTGTAGAC 57.647 39.130 0.00 0.00 0.00 2.59
1164 1188 4.817464 AGGTAAAACAAATGCGTGTAGACA 59.183 37.500 0.00 0.00 0.00 3.41
1165 1189 5.297278 AGGTAAAACAAATGCGTGTAGACAA 59.703 36.000 0.00 0.00 0.00 3.18
1166 1190 5.397240 GGTAAAACAAATGCGTGTAGACAAC 59.603 40.000 0.00 0.00 0.00 3.32
1167 1191 4.624336 AAACAAATGCGTGTAGACAACA 57.376 36.364 0.00 0.00 35.06 3.33
1168 1192 3.878086 ACAAATGCGTGTAGACAACAG 57.122 42.857 0.00 0.00 39.29 3.16
1169 1193 3.462982 ACAAATGCGTGTAGACAACAGA 58.537 40.909 0.00 0.00 39.29 3.41
1177 1201 4.921515 GCGTGTAGACAACAGAGTTCATAA 59.078 41.667 0.00 0.00 39.29 1.90
1205 1229 3.434299 CAGATTGCACCTTCATTTTTGCC 59.566 43.478 0.00 0.00 33.86 4.52
1208 1232 1.410517 TGCACCTTCATTTTTGCCGAA 59.589 42.857 0.00 0.00 33.86 4.30
1215 1239 4.808364 CCTTCATTTTTGCCGAAGAACAAA 59.192 37.500 0.00 0.00 38.75 2.83
1219 1243 6.942891 TCATTTTTGCCGAAGAACAAAATTC 58.057 32.000 2.15 0.00 40.81 2.17
1223 1247 2.622942 TGCCGAAGAACAAAATTCTGCT 59.377 40.909 0.00 0.00 36.82 4.24
1230 1254 5.841957 AGAACAAAATTCTGCTGTGAACT 57.158 34.783 0.00 0.00 0.00 3.01
1245 1269 6.751425 TGCTGTGAACTTTTTGTAACTTGATG 59.249 34.615 0.00 0.00 0.00 3.07
1266 1290 3.130869 TGCATTTTCTGTGCTTTGAGTGT 59.869 39.130 0.00 0.00 42.92 3.55
1268 1292 4.734402 GCATTTTCTGTGCTTTGAGTGTCA 60.734 41.667 0.00 0.00 39.45 3.58
1270 1294 4.355543 TTTCTGTGCTTTGAGTGTCAAC 57.644 40.909 0.00 0.00 35.89 3.18
1294 1318 2.037251 AGAGCTAACACAACGTCCATGT 59.963 45.455 0.00 0.00 0.00 3.21
1302 1327 1.885887 ACAACGTCCATGTGATTTGGG 59.114 47.619 0.00 0.00 34.85 4.12
1308 1333 0.249955 CCATGTGATTTGGGGGCAAC 59.750 55.000 0.00 0.00 0.00 4.17
1314 1339 2.831526 GTGATTTGGGGGCAACTACATT 59.168 45.455 0.00 0.00 0.00 2.71
1317 1342 1.626686 TTGGGGGCAACTACATTGTG 58.373 50.000 0.00 0.00 40.77 3.33
1343 1368 1.059584 TGGTGAGGACTGGCCAAGAA 61.060 55.000 7.01 0.00 40.02 2.52
1408 1433 3.263369 TCCACCCACCTTCAGTACTTA 57.737 47.619 0.00 0.00 0.00 2.24
1409 1434 3.589641 TCCACCCACCTTCAGTACTTAA 58.410 45.455 0.00 0.00 0.00 1.85
1410 1435 3.581332 TCCACCCACCTTCAGTACTTAAG 59.419 47.826 9.47 9.47 0.00 1.85
1411 1436 3.335579 CACCCACCTTCAGTACTTAAGC 58.664 50.000 10.76 0.00 0.00 3.09
1412 1437 2.305052 ACCCACCTTCAGTACTTAAGCC 59.695 50.000 10.76 0.00 0.00 4.35
1413 1438 2.355818 CCCACCTTCAGTACTTAAGCCC 60.356 54.545 10.76 0.00 0.00 5.19
1414 1439 2.572104 CCACCTTCAGTACTTAAGCCCT 59.428 50.000 10.76 0.00 0.00 5.19
1415 1440 3.600388 CACCTTCAGTACTTAAGCCCTG 58.400 50.000 10.76 13.29 0.00 4.45
1416 1441 3.008049 CACCTTCAGTACTTAAGCCCTGT 59.992 47.826 17.05 1.85 0.00 4.00
1417 1442 3.651423 ACCTTCAGTACTTAAGCCCTGTT 59.349 43.478 17.05 0.00 0.00 3.16
1418 1443 4.104261 ACCTTCAGTACTTAAGCCCTGTTT 59.896 41.667 17.05 0.00 0.00 2.83
1419 1444 4.455877 CCTTCAGTACTTAAGCCCTGTTTG 59.544 45.833 17.05 10.67 0.00 2.93
1420 1445 4.015872 TCAGTACTTAAGCCCTGTTTGG 57.984 45.455 17.05 0.00 0.00 3.28
1421 1446 3.649023 TCAGTACTTAAGCCCTGTTTGGA 59.351 43.478 17.05 1.01 38.35 3.53
1422 1447 4.103469 TCAGTACTTAAGCCCTGTTTGGAA 59.897 41.667 17.05 0.46 38.35 3.53
1423 1448 5.010282 CAGTACTTAAGCCCTGTTTGGAAT 58.990 41.667 1.29 0.00 38.35 3.01
1424 1449 5.123979 CAGTACTTAAGCCCTGTTTGGAATC 59.876 44.000 1.29 0.00 38.35 2.52
1425 1450 4.112634 ACTTAAGCCCTGTTTGGAATCA 57.887 40.909 1.29 0.00 38.35 2.57
1426 1451 3.826729 ACTTAAGCCCTGTTTGGAATCAC 59.173 43.478 1.29 0.00 38.35 3.06
1427 1452 2.683211 AAGCCCTGTTTGGAATCACT 57.317 45.000 0.00 0.00 38.35 3.41
1428 1453 2.206576 AGCCCTGTTTGGAATCACTC 57.793 50.000 0.00 0.00 38.35 3.51
1429 1454 1.177401 GCCCTGTTTGGAATCACTCC 58.823 55.000 0.00 0.00 45.64 3.85
1437 1462 4.162690 GAATCACTCCGCCCCGCT 62.163 66.667 0.00 0.00 0.00 5.52
1438 1463 4.162690 AATCACTCCGCCCCGCTC 62.163 66.667 0.00 0.00 0.00 5.03
1463 1488 3.213402 GGAGCGGAGTCGAGGGAG 61.213 72.222 0.00 0.00 39.00 4.30
1464 1489 2.438795 GAGCGGAGTCGAGGGAGT 60.439 66.667 0.00 0.00 39.00 3.85
1465 1490 2.752238 AGCGGAGTCGAGGGAGTG 60.752 66.667 0.00 0.00 39.00 3.51
1466 1491 3.827898 GCGGAGTCGAGGGAGTGG 61.828 72.222 0.00 0.00 39.00 4.00
1467 1492 2.045242 CGGAGTCGAGGGAGTGGA 60.045 66.667 0.00 0.00 39.00 4.02
1468 1493 2.115911 CGGAGTCGAGGGAGTGGAG 61.116 68.421 0.00 0.00 39.00 3.86
1469 1494 1.000646 GGAGTCGAGGGAGTGGAGT 60.001 63.158 0.00 0.00 0.00 3.85
1470 1495 1.316706 GGAGTCGAGGGAGTGGAGTG 61.317 65.000 0.00 0.00 0.00 3.51
1471 1496 1.304547 AGTCGAGGGAGTGGAGTGG 60.305 63.158 0.00 0.00 0.00 4.00
1472 1497 1.304217 GTCGAGGGAGTGGAGTGGA 60.304 63.158 0.00 0.00 0.00 4.02
1473 1498 0.898789 GTCGAGGGAGTGGAGTGGAA 60.899 60.000 0.00 0.00 0.00 3.53
1474 1499 0.898789 TCGAGGGAGTGGAGTGGAAC 60.899 60.000 0.00 0.00 0.00 3.62
1486 1511 3.403936 GTGGAACTGAACAGGCACT 57.596 52.632 6.76 0.00 43.88 4.40
1487 1512 1.680338 GTGGAACTGAACAGGCACTT 58.320 50.000 6.76 0.00 34.60 3.16
1488 1513 2.846193 GTGGAACTGAACAGGCACTTA 58.154 47.619 6.76 0.00 34.60 2.24
1491 1516 3.820467 TGGAACTGAACAGGCACTTAATG 59.180 43.478 6.76 0.00 34.60 1.90
1560 1586 7.099764 ACTTGAAACGAGTTCAGTCATATGAT 58.900 34.615 9.02 0.00 46.85 2.45
1570 1597 7.049754 AGTTCAGTCATATGATGCATGTAACA 58.950 34.615 2.46 0.00 0.00 2.41
2357 2385 0.875059 CAAGCCTCTCGGTTTTGACC 59.125 55.000 0.00 0.00 30.53 4.02
2392 2420 0.318441 CCACGAGCTTTCTGACCTGA 59.682 55.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.742053 TGCGCAGGTTGAAAGTATTCTC 59.258 45.455 5.66 0.00 36.48 2.87
1 2 2.778299 TGCGCAGGTTGAAAGTATTCT 58.222 42.857 5.66 0.00 36.48 2.40
2 3 3.764885 ATGCGCAGGTTGAAAGTATTC 57.235 42.857 18.32 0.00 36.04 1.75
3 4 4.261801 ACTATGCGCAGGTTGAAAGTATT 58.738 39.130 18.32 0.00 0.00 1.89
4 5 3.873910 ACTATGCGCAGGTTGAAAGTAT 58.126 40.909 18.32 0.00 0.00 2.12
5 6 3.328382 ACTATGCGCAGGTTGAAAGTA 57.672 42.857 18.32 0.00 0.00 2.24
6 7 2.185004 ACTATGCGCAGGTTGAAAGT 57.815 45.000 18.32 7.40 0.00 2.66
7 8 3.000041 TGTACTATGCGCAGGTTGAAAG 59.000 45.455 18.32 6.76 0.00 2.62
8 9 3.000041 CTGTACTATGCGCAGGTTGAAA 59.000 45.455 18.32 0.00 0.00 2.69
9 10 2.232696 TCTGTACTATGCGCAGGTTGAA 59.767 45.455 18.32 5.80 0.00 2.69
10 11 1.822371 TCTGTACTATGCGCAGGTTGA 59.178 47.619 18.32 12.69 0.00 3.18
11 12 2.293677 TCTGTACTATGCGCAGGTTG 57.706 50.000 18.32 8.20 0.00 3.77
12 13 3.118775 TCAATCTGTACTATGCGCAGGTT 60.119 43.478 18.32 0.56 34.29 3.50
13 14 2.430694 TCAATCTGTACTATGCGCAGGT 59.569 45.455 18.32 19.23 0.00 4.00
14 15 3.097877 TCAATCTGTACTATGCGCAGG 57.902 47.619 18.32 13.99 0.00 4.85
15 16 6.769608 TTTATCAATCTGTACTATGCGCAG 57.230 37.500 18.32 5.51 0.00 5.18
16 17 7.154656 AGATTTATCAATCTGTACTATGCGCA 58.845 34.615 14.96 14.96 46.38 6.09
17 18 7.588143 AGATTTATCAATCTGTACTATGCGC 57.412 36.000 0.00 0.00 46.38 6.09
31 32 9.958180 TCAAGTGAATGACCTTAGATTTATCAA 57.042 29.630 0.00 0.00 0.00 2.57
32 33 9.605275 CTCAAGTGAATGACCTTAGATTTATCA 57.395 33.333 0.00 0.00 0.00 2.15
33 34 9.050601 CCTCAAGTGAATGACCTTAGATTTATC 57.949 37.037 0.00 0.00 0.00 1.75
34 35 7.995488 CCCTCAAGTGAATGACCTTAGATTTAT 59.005 37.037 0.00 0.00 0.00 1.40
35 36 7.338710 CCCTCAAGTGAATGACCTTAGATTTA 58.661 38.462 0.00 0.00 0.00 1.40
36 37 6.183347 CCCTCAAGTGAATGACCTTAGATTT 58.817 40.000 0.00 0.00 0.00 2.17
37 38 5.339530 CCCCTCAAGTGAATGACCTTAGATT 60.340 44.000 0.00 0.00 0.00 2.40
38 39 4.164988 CCCCTCAAGTGAATGACCTTAGAT 59.835 45.833 0.00 0.00 0.00 1.98
39 40 3.519510 CCCCTCAAGTGAATGACCTTAGA 59.480 47.826 0.00 0.00 0.00 2.10
40 41 3.519510 TCCCCTCAAGTGAATGACCTTAG 59.480 47.826 0.00 0.00 0.00 2.18
41 42 3.526899 TCCCCTCAAGTGAATGACCTTA 58.473 45.455 0.00 0.00 0.00 2.69
42 43 2.348472 TCCCCTCAAGTGAATGACCTT 58.652 47.619 0.00 0.00 0.00 3.50
43 44 2.044793 TCCCCTCAAGTGAATGACCT 57.955 50.000 0.00 0.00 0.00 3.85
44 45 2.879103 TTCCCCTCAAGTGAATGACC 57.121 50.000 0.00 0.00 0.00 4.02
45 46 5.728637 ATTTTTCCCCTCAAGTGAATGAC 57.271 39.130 0.00 0.00 0.00 3.06
46 47 8.434589 AATAATTTTTCCCCTCAAGTGAATGA 57.565 30.769 0.00 0.00 0.00 2.57
75 76 2.074729 TTTCCCTCTTCCCGCAAAAA 57.925 45.000 0.00 0.00 0.00 1.94
76 77 2.298729 CAATTTCCCTCTTCCCGCAAAA 59.701 45.455 0.00 0.00 0.00 2.44
77 78 1.892474 CAATTTCCCTCTTCCCGCAAA 59.108 47.619 0.00 0.00 0.00 3.68
78 79 1.203001 ACAATTTCCCTCTTCCCGCAA 60.203 47.619 0.00 0.00 0.00 4.85
79 80 0.404040 ACAATTTCCCTCTTCCCGCA 59.596 50.000 0.00 0.00 0.00 5.69
80 81 1.202348 CAACAATTTCCCTCTTCCCGC 59.798 52.381 0.00 0.00 0.00 6.13
81 82 2.790433 TCAACAATTTCCCTCTTCCCG 58.210 47.619 0.00 0.00 0.00 5.14
82 83 4.089361 ACATCAACAATTTCCCTCTTCCC 58.911 43.478 0.00 0.00 0.00 3.97
83 84 4.158579 GGACATCAACAATTTCCCTCTTCC 59.841 45.833 0.00 0.00 29.19 3.46
84 85 5.012893 AGGACATCAACAATTTCCCTCTTC 58.987 41.667 0.00 0.00 35.15 2.87
85 86 5.003096 AGGACATCAACAATTTCCCTCTT 57.997 39.130 0.00 0.00 35.15 2.85
86 87 4.664688 AGGACATCAACAATTTCCCTCT 57.335 40.909 0.00 0.00 35.15 3.69
151 152 4.062293 GCCTGGTGTATATCGCACATTTA 58.938 43.478 11.05 0.00 38.51 1.40
159 160 3.735237 AGACTTGCCTGGTGTATATCG 57.265 47.619 0.00 0.00 0.00 2.92
164 165 3.447586 GTGATCTAGACTTGCCTGGTGTA 59.552 47.826 0.00 0.00 0.00 2.90
168 169 3.055530 ACTTGTGATCTAGACTTGCCTGG 60.056 47.826 0.00 0.00 0.00 4.45
174 175 8.908903 CCTAGTTATCACTTGTGATCTAGACTT 58.091 37.037 25.15 7.40 34.06 3.01
195 196 4.080687 GGCTATCGGTCATTACTCCTAGT 58.919 47.826 0.00 0.00 0.00 2.57
197 198 4.079970 CAGGCTATCGGTCATTACTCCTA 58.920 47.826 0.00 0.00 0.00 2.94
232 233 5.813672 GCTTTGATGCCATTTTATGACACAT 59.186 36.000 0.00 0.00 0.00 3.21
248 249 1.542915 CTGTGAGGGTTGGCTTTGATG 59.457 52.381 0.00 0.00 0.00 3.07
300 302 0.744057 CACACGCCATGCTCCACATA 60.744 55.000 0.00 0.00 36.64 2.29
316 318 2.283101 GCCTTGATGGGCCACACA 60.283 61.111 9.28 10.09 45.92 3.72
329 331 2.835317 TATGCCATGCGGTGTGCCTT 62.835 55.000 0.00 0.00 45.60 4.35
334 336 1.159713 CGACATATGCCATGCGGTGT 61.160 55.000 1.58 0.00 33.28 4.16
347 349 2.962421 TCATGTATCCAGTGCCGACATA 59.038 45.455 0.00 0.00 0.00 2.29
368 372 2.159057 ACGTTCCCTCTTAACACACGTT 60.159 45.455 0.00 0.00 36.00 3.99
376 380 4.581409 CCCAAAAGAAACGTTCCCTCTTAA 59.419 41.667 12.77 0.00 0.00 1.85
450 454 7.731054 ACCATGAGAACTAGTCAATCCTATTC 58.269 38.462 0.00 0.00 0.00 1.75
499 503 3.646162 AGAAGACACACCCTGTTGATACA 59.354 43.478 0.00 0.00 31.03 2.29
500 504 4.273148 AGAAGACACACCCTGTTGATAC 57.727 45.455 0.00 0.00 31.03 2.24
509 513 1.202722 TCCGGAAAAGAAGACACACCC 60.203 52.381 0.00 0.00 0.00 4.61
525 529 3.864003 GGTTTTTAGAGACGATCTTCCGG 59.136 47.826 0.00 0.00 39.64 5.14
546 550 7.421087 AAGTAGCTTAACCTAACTTAGAGGG 57.579 40.000 0.00 0.00 38.52 4.30
575 579 2.957006 ACGGGCGTCTAGATTGTAAGAT 59.043 45.455 0.00 0.00 0.00 2.40
585 589 4.147653 CACGAAATTAATACGGGCGTCTAG 59.852 45.833 15.70 0.00 0.00 2.43
593 597 4.785341 GCTTGGAGCACGAAATTAATACGG 60.785 45.833 15.70 8.48 41.89 4.02
611 616 1.067354 GGCCAGAAGTTGAATGCTTGG 60.067 52.381 0.00 0.00 0.00 3.61
662 667 9.011095 TCCAATCGATTACTATCTCTCGTTTAT 57.989 33.333 10.97 0.00 33.10 1.40
667 672 6.749578 CCAATCCAATCGATTACTATCTCTCG 59.250 42.308 10.97 0.00 39.28 4.04
670 675 5.582665 GGCCAATCCAATCGATTACTATCTC 59.417 44.000 10.97 0.00 39.28 2.75
708 713 7.466746 AAACACACCTGCTTCATACAAATAT 57.533 32.000 0.00 0.00 0.00 1.28
734 739 4.225042 TGTTCTGCTTTAGCTGGATAGGAA 59.775 41.667 0.00 0.00 42.66 3.36
804 809 0.102481 GCTGAATTCTGCATGCTGGG 59.898 55.000 26.80 11.36 40.06 4.45
899 904 3.405831 CAGCTGAGACCAGAAATGAACA 58.594 45.455 8.42 0.00 43.02 3.18
900 905 2.161211 GCAGCTGAGACCAGAAATGAAC 59.839 50.000 20.43 0.00 43.02 3.18
902 907 1.348696 TGCAGCTGAGACCAGAAATGA 59.651 47.619 20.43 0.00 43.02 2.57
903 908 1.738350 CTGCAGCTGAGACCAGAAATG 59.262 52.381 20.43 0.00 43.02 2.32
904 909 1.949547 GCTGCAGCTGAGACCAGAAAT 60.950 52.381 31.33 0.00 43.02 2.17
936 941 3.822097 GGGCATAGACCCCTACTACTA 57.178 52.381 0.00 0.00 45.00 1.82
949 954 3.648009 GATCTTCGTCTCAAGGGCATAG 58.352 50.000 0.00 0.00 0.00 2.23
951 956 1.202463 CGATCTTCGTCTCAAGGGCAT 60.202 52.381 0.00 0.00 34.72 4.40
989 994 0.608035 TTTCCCCATTGTCGCACCTC 60.608 55.000 0.00 0.00 0.00 3.85
1015 1020 2.829043 TTCCTCATCGACGGCGTTGG 62.829 60.000 25.85 15.72 37.70 3.77
1018 1023 1.592400 TTCTTCCTCATCGACGGCGT 61.592 55.000 14.65 14.65 38.98 5.68
1038 1043 2.084610 TGACATGCTTCCTCTGAACG 57.915 50.000 0.00 0.00 0.00 3.95
1056 1061 2.745100 ACACGCAGCAGCTCCATG 60.745 61.111 0.00 0.00 39.10 3.66
1072 1077 4.314440 TGGAGGCCGTGCAGTGAC 62.314 66.667 0.00 0.00 0.00 3.67
1077 1082 3.113514 TTCTTGTGGAGGCCGTGCA 62.114 57.895 0.00 0.00 0.00 4.57
1081 1086 3.423154 GCGTTCTTGTGGAGGCCG 61.423 66.667 0.00 0.00 0.00 6.13
1089 1094 0.035317 TGATGCTCCAGCGTTCTTGT 59.965 50.000 0.00 0.00 45.83 3.16
1146 1151 4.334203 TCTGTTGTCTACACGCATTTGTTT 59.666 37.500 0.00 0.00 32.10 2.83
1148 1153 3.462982 TCTGTTGTCTACACGCATTTGT 58.537 40.909 0.00 0.00 32.10 2.83
1157 1181 7.331934 GCATCTTTATGAACTCTGTTGTCTACA 59.668 37.037 0.00 0.00 34.84 2.74
1158 1182 7.331934 TGCATCTTTATGAACTCTGTTGTCTAC 59.668 37.037 0.00 0.00 34.84 2.59
1159 1183 7.386059 TGCATCTTTATGAACTCTGTTGTCTA 58.614 34.615 0.00 0.00 34.84 2.59
1160 1184 6.233434 TGCATCTTTATGAACTCTGTTGTCT 58.767 36.000 0.00 0.00 34.84 3.41
1161 1185 6.369890 TCTGCATCTTTATGAACTCTGTTGTC 59.630 38.462 0.00 0.00 34.84 3.18
1162 1186 6.233434 TCTGCATCTTTATGAACTCTGTTGT 58.767 36.000 0.00 0.00 34.84 3.32
1163 1187 6.732531 TCTGCATCTTTATGAACTCTGTTG 57.267 37.500 0.00 0.00 34.84 3.33
1164 1188 7.627939 GCAATCTGCATCTTTATGAACTCTGTT 60.628 37.037 0.00 0.00 44.26 3.16
1165 1189 6.183360 GCAATCTGCATCTTTATGAACTCTGT 60.183 38.462 0.00 0.00 44.26 3.41
1166 1190 6.200100 GCAATCTGCATCTTTATGAACTCTG 58.800 40.000 0.00 0.00 44.26 3.35
1167 1191 6.374565 GCAATCTGCATCTTTATGAACTCT 57.625 37.500 0.00 0.00 44.26 3.24
1198 1222 5.220567 GCAGAATTTTGTTCTTCGGCAAAAA 60.221 36.000 6.55 0.00 44.38 1.94
1205 1229 4.847633 TCACAGCAGAATTTTGTTCTTCG 58.152 39.130 0.00 0.00 0.00 3.79
1208 1232 5.841957 AGTTCACAGCAGAATTTTGTTCT 57.158 34.783 0.00 0.00 0.00 3.01
1215 1239 7.547227 AGTTACAAAAAGTTCACAGCAGAATT 58.453 30.769 0.00 0.00 0.00 2.17
1219 1243 6.321717 TCAAGTTACAAAAAGTTCACAGCAG 58.678 36.000 0.00 0.00 0.00 4.24
1223 1247 6.625362 TGCATCAAGTTACAAAAAGTTCACA 58.375 32.000 0.00 0.00 0.00 3.58
1230 1254 8.602328 CACAGAAAATGCATCAAGTTACAAAAA 58.398 29.630 0.00 0.00 0.00 1.94
1245 1269 3.709987 ACACTCAAAGCACAGAAAATGC 58.290 40.909 0.00 0.00 43.74 3.56
1266 1290 2.863740 CGTTGTGTTAGCTCTGTGTTGA 59.136 45.455 0.00 0.00 0.00 3.18
1268 1292 2.864343 GACGTTGTGTTAGCTCTGTGTT 59.136 45.455 0.00 0.00 0.00 3.32
1270 1294 1.792949 GGACGTTGTGTTAGCTCTGTG 59.207 52.381 0.00 0.00 0.00 3.66
1294 1318 2.830923 CAATGTAGTTGCCCCCAAATCA 59.169 45.455 0.00 0.00 30.98 2.57
1296 1320 2.566724 CACAATGTAGTTGCCCCCAAAT 59.433 45.455 0.00 0.00 41.69 2.32
1302 1327 0.527565 CCTGCACAATGTAGTTGCCC 59.472 55.000 0.00 0.00 41.69 5.36
1308 1333 2.884012 TCACCAAACCTGCACAATGTAG 59.116 45.455 0.00 0.00 0.00 2.74
1314 1339 0.465460 GTCCTCACCAAACCTGCACA 60.465 55.000 0.00 0.00 0.00 4.57
1317 1342 0.890996 CCAGTCCTCACCAAACCTGC 60.891 60.000 0.00 0.00 0.00 4.85
1343 1368 0.588252 GTGCTGACGAACTGTGCAAT 59.412 50.000 0.00 0.00 35.34 3.56
1408 1433 2.519013 GAGTGATTCCAAACAGGGCTT 58.481 47.619 0.00 0.00 38.24 4.35
1409 1434 1.272147 GGAGTGATTCCAAACAGGGCT 60.272 52.381 0.00 0.00 46.01 5.19
1410 1435 1.177401 GGAGTGATTCCAAACAGGGC 58.823 55.000 0.00 0.00 46.01 5.19
1420 1445 4.162690 AGCGGGGCGGAGTGATTC 62.163 66.667 0.00 0.00 0.00 2.52
1421 1446 4.162690 GAGCGGGGCGGAGTGATT 62.163 66.667 0.00 0.00 0.00 2.57
1446 1471 3.213402 CTCCCTCGACTCCGCTCC 61.213 72.222 0.00 0.00 35.37 4.70
1447 1472 2.438795 ACTCCCTCGACTCCGCTC 60.439 66.667 0.00 0.00 35.37 5.03
1448 1473 2.752238 CACTCCCTCGACTCCGCT 60.752 66.667 0.00 0.00 35.37 5.52
1449 1474 3.827898 CCACTCCCTCGACTCCGC 61.828 72.222 0.00 0.00 35.37 5.54
1450 1475 2.045242 TCCACTCCCTCGACTCCG 60.045 66.667 0.00 0.00 37.07 4.63
1451 1476 1.000646 ACTCCACTCCCTCGACTCC 60.001 63.158 0.00 0.00 0.00 3.85
1452 1477 1.316706 CCACTCCACTCCCTCGACTC 61.317 65.000 0.00 0.00 0.00 3.36
1453 1478 1.304547 CCACTCCACTCCCTCGACT 60.305 63.158 0.00 0.00 0.00 4.18
1454 1479 0.898789 TTCCACTCCACTCCCTCGAC 60.899 60.000 0.00 0.00 0.00 4.20
1455 1480 0.898789 GTTCCACTCCACTCCCTCGA 60.899 60.000 0.00 0.00 0.00 4.04
1456 1481 0.900647 AGTTCCACTCCACTCCCTCG 60.901 60.000 0.00 0.00 0.00 4.63
1457 1482 0.610687 CAGTTCCACTCCACTCCCTC 59.389 60.000 0.00 0.00 0.00 4.30
1458 1483 0.191064 TCAGTTCCACTCCACTCCCT 59.809 55.000 0.00 0.00 0.00 4.20
1459 1484 1.056660 TTCAGTTCCACTCCACTCCC 58.943 55.000 0.00 0.00 0.00 4.30
1460 1485 1.416401 TGTTCAGTTCCACTCCACTCC 59.584 52.381 0.00 0.00 0.00 3.85
1461 1486 2.548920 CCTGTTCAGTTCCACTCCACTC 60.549 54.545 0.00 0.00 0.00 3.51
1462 1487 1.417890 CCTGTTCAGTTCCACTCCACT 59.582 52.381 0.00 0.00 0.00 4.00
1463 1488 1.884235 CCTGTTCAGTTCCACTCCAC 58.116 55.000 0.00 0.00 0.00 4.02
1464 1489 0.108585 GCCTGTTCAGTTCCACTCCA 59.891 55.000 0.00 0.00 0.00 3.86
1465 1490 0.108585 TGCCTGTTCAGTTCCACTCC 59.891 55.000 0.00 0.00 0.00 3.85
1466 1491 1.202698 AGTGCCTGTTCAGTTCCACTC 60.203 52.381 10.13 0.00 0.00 3.51
1467 1492 0.839946 AGTGCCTGTTCAGTTCCACT 59.160 50.000 10.13 10.13 0.00 4.00
1468 1493 1.680338 AAGTGCCTGTTCAGTTCCAC 58.320 50.000 0.00 3.96 0.00 4.02
1469 1494 3.569194 TTAAGTGCCTGTTCAGTTCCA 57.431 42.857 0.00 0.00 32.39 3.53
1470 1495 3.191371 CCATTAAGTGCCTGTTCAGTTCC 59.809 47.826 0.00 0.00 32.39 3.62
1471 1496 3.821033 ACCATTAAGTGCCTGTTCAGTTC 59.179 43.478 0.00 0.00 32.39 3.01
1472 1497 3.821033 GACCATTAAGTGCCTGTTCAGTT 59.179 43.478 0.00 0.00 34.33 3.16
1473 1498 3.073062 AGACCATTAAGTGCCTGTTCAGT 59.927 43.478 0.00 0.00 0.00 3.41
1474 1499 3.679389 AGACCATTAAGTGCCTGTTCAG 58.321 45.455 0.00 0.00 0.00 3.02
1475 1500 3.788227 AGACCATTAAGTGCCTGTTCA 57.212 42.857 0.00 0.00 0.00 3.18
1476 1501 5.880332 TGATAAGACCATTAAGTGCCTGTTC 59.120 40.000 0.00 0.00 0.00 3.18
1477 1502 5.815581 TGATAAGACCATTAAGTGCCTGTT 58.184 37.500 0.00 0.00 0.00 3.16
1478 1503 5.435686 TGATAAGACCATTAAGTGCCTGT 57.564 39.130 0.00 0.00 0.00 4.00
1479 1504 6.757897 TTTGATAAGACCATTAAGTGCCTG 57.242 37.500 0.00 0.00 0.00 4.85
1480 1505 6.719370 TGTTTTGATAAGACCATTAAGTGCCT 59.281 34.615 0.00 0.00 0.00 4.75
1481 1506 6.919721 TGTTTTGATAAGACCATTAAGTGCC 58.080 36.000 0.00 0.00 0.00 5.01
1482 1507 8.243426 TGATGTTTTGATAAGACCATTAAGTGC 58.757 33.333 0.00 0.00 0.00 4.40
1560 1586 2.683968 GAAGGAGTCGTGTTACATGCA 58.316 47.619 0.00 0.00 0.00 3.96
1581 1609 4.660352 GACACTGATCTGAGAAAACAGC 57.340 45.455 6.60 0.00 37.75 4.40
1987 2015 6.821665 GGAATAGGTGTAGAACAATGTTGCTA 59.178 38.462 2.20 2.49 0.00 3.49
2392 2420 3.306613 TGAGCTCTGTGGATCTGATGAT 58.693 45.455 16.19 0.00 35.26 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.