Multiple sequence alignment - TraesCS5A01G175900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G175900 | chr5A | 100.000 | 2498 | 0 | 0 | 1 | 2498 | 370108059 | 370105562 | 0.000000e+00 | 4614.0 |
1 | TraesCS5A01G175900 | chr5A | 100.000 | 28 | 0 | 0 | 1743 | 1770 | 3286476 | 3286449 | 4.000000e-03 | 52.8 |
2 | TraesCS5A01G175900 | chr5D | 88.721 | 2119 | 102 | 47 | 195 | 2195 | 278440515 | 278442614 | 0.000000e+00 | 2462.0 |
3 | TraesCS5A01G175900 | chr5D | 91.031 | 1717 | 98 | 24 | 506 | 2190 | 278357881 | 278359573 | 0.000000e+00 | 2266.0 |
4 | TraesCS5A01G175900 | chr5D | 92.350 | 183 | 13 | 1 | 2271 | 2453 | 319952214 | 319952395 | 2.460000e-65 | 259.0 |
5 | TraesCS5A01G175900 | chr5D | 82.805 | 221 | 23 | 11 | 263 | 478 | 278357479 | 278357689 | 1.530000e-42 | 183.0 |
6 | TraesCS5A01G175900 | chr5D | 100.000 | 32 | 0 | 0 | 2200 | 2231 | 278442636 | 278442667 | 2.680000e-05 | 60.2 |
7 | TraesCS5A01G175900 | chr5D | 100.000 | 28 | 0 | 0 | 1743 | 1770 | 6385594 | 6385621 | 4.000000e-03 | 52.8 |
8 | TraesCS5A01G175900 | chr5B | 88.991 | 1735 | 111 | 32 | 246 | 1934 | 316530969 | 316532669 | 0.000000e+00 | 2073.0 |
9 | TraesCS5A01G175900 | chr5B | 87.485 | 1670 | 106 | 44 | 409 | 2024 | 316561032 | 316562652 | 0.000000e+00 | 1831.0 |
10 | TraesCS5A01G175900 | chr5B | 90.728 | 151 | 13 | 1 | 246 | 396 | 316558944 | 316559093 | 1.520000e-47 | 200.0 |
11 | TraesCS5A01G175900 | chr5B | 77.193 | 114 | 18 | 6 | 1743 | 1855 | 545190513 | 545190407 | 2.680000e-05 | 60.2 |
12 | TraesCS5A01G175900 | chr7A | 94.022 | 184 | 10 | 1 | 2270 | 2453 | 202996977 | 202997159 | 6.800000e-71 | 278.0 |
13 | TraesCS5A01G175900 | chr7A | 92.350 | 183 | 12 | 2 | 2271 | 2453 | 543983273 | 543983093 | 2.460000e-65 | 259.0 |
14 | TraesCS5A01G175900 | chr7A | 85.000 | 120 | 16 | 2 | 46 | 164 | 215178756 | 215178874 | 1.210000e-23 | 121.0 |
15 | TraesCS5A01G175900 | chr7A | 84.034 | 119 | 19 | 0 | 46 | 164 | 513991413 | 513991295 | 5.650000e-22 | 115.0 |
16 | TraesCS5A01G175900 | chr7A | 83.471 | 121 | 19 | 1 | 46 | 165 | 438855313 | 438855193 | 7.300000e-21 | 111.0 |
17 | TraesCS5A01G175900 | chr1B | 93.443 | 183 | 11 | 1 | 2271 | 2453 | 390618527 | 390618346 | 1.140000e-68 | 270.0 |
18 | TraesCS5A01G175900 | chr1B | 92.391 | 184 | 12 | 2 | 2271 | 2453 | 323620272 | 323620454 | 6.850000e-66 | 261.0 |
19 | TraesCS5A01G175900 | chr2D | 92.350 | 183 | 13 | 1 | 2271 | 2453 | 640591839 | 640592020 | 2.460000e-65 | 259.0 |
20 | TraesCS5A01G175900 | chr6B | 91.803 | 183 | 15 | 0 | 2271 | 2453 | 708269827 | 708269645 | 3.190000e-64 | 255.0 |
21 | TraesCS5A01G175900 | chr2A | 92.308 | 182 | 11 | 3 | 2273 | 2453 | 166754235 | 166754056 | 3.190000e-64 | 255.0 |
22 | TraesCS5A01G175900 | chr2A | 85.841 | 113 | 14 | 2 | 46 | 157 | 768997432 | 768997543 | 4.360000e-23 | 119.0 |
23 | TraesCS5A01G175900 | chr4B | 91.803 | 183 | 14 | 1 | 2271 | 2453 | 215669211 | 215669392 | 1.150000e-63 | 254.0 |
24 | TraesCS5A01G175900 | chr4D | 87.395 | 119 | 15 | 0 | 45 | 163 | 12510855 | 12510737 | 1.200000e-28 | 137.0 |
25 | TraesCS5A01G175900 | chr6D | 86.066 | 122 | 15 | 2 | 46 | 166 | 406121280 | 406121160 | 2.020000e-26 | 130.0 |
26 | TraesCS5A01G175900 | chr2B | 85.593 | 118 | 17 | 0 | 46 | 163 | 518048056 | 518048173 | 9.380000e-25 | 124.0 |
27 | TraesCS5A01G175900 | chr7D | 84.483 | 116 | 18 | 0 | 46 | 161 | 155295830 | 155295715 | 5.650000e-22 | 115.0 |
28 | TraesCS5A01G175900 | chr7D | 84.034 | 119 | 19 | 0 | 46 | 164 | 419374961 | 419375079 | 5.650000e-22 | 115.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G175900 | chr5A | 370105562 | 370108059 | 2497 | True | 4614.0 | 4614 | 100.0000 | 1 | 2498 | 1 | chr5A.!!$R2 | 2497 |
1 | TraesCS5A01G175900 | chr5D | 278440515 | 278442667 | 2152 | False | 1261.1 | 2462 | 94.3605 | 195 | 2231 | 2 | chr5D.!!$F4 | 2036 |
2 | TraesCS5A01G175900 | chr5D | 278357479 | 278359573 | 2094 | False | 1224.5 | 2266 | 86.9180 | 263 | 2190 | 2 | chr5D.!!$F3 | 1927 |
3 | TraesCS5A01G175900 | chr5B | 316530969 | 316532669 | 1700 | False | 2073.0 | 2073 | 88.9910 | 246 | 1934 | 1 | chr5B.!!$F1 | 1688 |
4 | TraesCS5A01G175900 | chr5B | 316558944 | 316562652 | 3708 | False | 1015.5 | 1831 | 89.1065 | 246 | 2024 | 2 | chr5B.!!$F2 | 1778 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
686 | 2791 | 0.095417 | GCATCAACCGCTCTTTCGTC | 59.905 | 55.0 | 0.0 | 0.0 | 0.0 | 4.2 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1902 | 4063 | 0.031314 | ATGCGGATGTCACTCTAGCG | 59.969 | 55.0 | 0.0 | 0.0 | 0.0 | 4.26 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 3.694535 | AAATGTAGTCCTCGAGTAGCG | 57.305 | 47.619 | 12.31 | 0.00 | 42.69 | 4.26 |
36 | 37 | 1.920762 | GCGAATAGCTGTGACGAGC | 59.079 | 57.895 | 12.75 | 0.00 | 44.04 | 5.03 |
37 | 38 | 1.483424 | GCGAATAGCTGTGACGAGCC | 61.483 | 60.000 | 12.75 | 0.00 | 44.04 | 4.70 |
38 | 39 | 0.179137 | CGAATAGCTGTGACGAGCCA | 60.179 | 55.000 | 0.00 | 0.00 | 40.08 | 4.75 |
39 | 40 | 1.735700 | CGAATAGCTGTGACGAGCCAA | 60.736 | 52.381 | 0.00 | 0.00 | 40.08 | 4.52 |
40 | 41 | 2.346803 | GAATAGCTGTGACGAGCCAAA | 58.653 | 47.619 | 0.00 | 0.00 | 40.08 | 3.28 |
41 | 42 | 2.015736 | ATAGCTGTGACGAGCCAAAG | 57.984 | 50.000 | 0.00 | 0.00 | 40.08 | 2.77 |
42 | 43 | 0.966179 | TAGCTGTGACGAGCCAAAGA | 59.034 | 50.000 | 0.00 | 0.00 | 40.08 | 2.52 |
43 | 44 | 0.320247 | AGCTGTGACGAGCCAAAGAG | 60.320 | 55.000 | 0.00 | 0.00 | 40.08 | 2.85 |
44 | 45 | 0.601311 | GCTGTGACGAGCCAAAGAGT | 60.601 | 55.000 | 0.00 | 0.00 | 32.35 | 3.24 |
45 | 46 | 1.871080 | CTGTGACGAGCCAAAGAGTT | 58.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
46 | 47 | 2.866460 | GCTGTGACGAGCCAAAGAGTTA | 60.866 | 50.000 | 0.00 | 0.00 | 32.35 | 2.24 |
47 | 48 | 2.731976 | CTGTGACGAGCCAAAGAGTTAC | 59.268 | 50.000 | 0.00 | 0.00 | 0.00 | 2.50 |
48 | 49 | 2.364324 | TGTGACGAGCCAAAGAGTTACT | 59.636 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
49 | 50 | 2.987821 | GTGACGAGCCAAAGAGTTACTC | 59.012 | 50.000 | 3.85 | 3.85 | 0.00 | 2.59 |
50 | 51 | 2.029290 | TGACGAGCCAAAGAGTTACTCC | 60.029 | 50.000 | 8.96 | 0.00 | 0.00 | 3.85 |
51 | 52 | 1.275573 | ACGAGCCAAAGAGTTACTCCC | 59.724 | 52.381 | 8.96 | 0.00 | 0.00 | 4.30 |
52 | 53 | 1.550976 | CGAGCCAAAGAGTTACTCCCT | 59.449 | 52.381 | 8.96 | 0.00 | 0.00 | 4.20 |
53 | 54 | 2.417515 | CGAGCCAAAGAGTTACTCCCTC | 60.418 | 54.545 | 8.96 | 6.63 | 0.00 | 4.30 |
54 | 55 | 1.909986 | AGCCAAAGAGTTACTCCCTCC | 59.090 | 52.381 | 8.96 | 0.00 | 0.00 | 4.30 |
55 | 56 | 1.405661 | GCCAAAGAGTTACTCCCTCCG | 60.406 | 57.143 | 8.96 | 0.00 | 0.00 | 4.63 |
56 | 57 | 1.900486 | CCAAAGAGTTACTCCCTCCGT | 59.100 | 52.381 | 8.96 | 0.00 | 0.00 | 4.69 |
57 | 58 | 2.094130 | CCAAAGAGTTACTCCCTCCGTC | 60.094 | 54.545 | 8.96 | 0.00 | 0.00 | 4.79 |
58 | 59 | 1.849977 | AAGAGTTACTCCCTCCGTCC | 58.150 | 55.000 | 8.96 | 0.00 | 0.00 | 4.79 |
59 | 60 | 0.702902 | AGAGTTACTCCCTCCGTCCA | 59.297 | 55.000 | 8.96 | 0.00 | 0.00 | 4.02 |
60 | 61 | 1.076677 | AGAGTTACTCCCTCCGTCCAA | 59.923 | 52.381 | 8.96 | 0.00 | 0.00 | 3.53 |
61 | 62 | 1.897802 | GAGTTACTCCCTCCGTCCAAA | 59.102 | 52.381 | 0.00 | 0.00 | 0.00 | 3.28 |
62 | 63 | 2.301009 | GAGTTACTCCCTCCGTCCAAAA | 59.699 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
63 | 64 | 2.707257 | AGTTACTCCCTCCGTCCAAAAA | 59.293 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
105 | 106 | 9.817809 | TGTCTCTTAAATGGATGTATCTAACAC | 57.182 | 33.333 | 0.00 | 0.00 | 42.09 | 3.32 |
113 | 114 | 8.964476 | AATGGATGTATCTAACACTAACTTGG | 57.036 | 34.615 | 0.00 | 0.00 | 42.09 | 3.61 |
114 | 115 | 7.490657 | TGGATGTATCTAACACTAACTTGGT | 57.509 | 36.000 | 0.00 | 0.00 | 42.09 | 3.67 |
115 | 116 | 7.327975 | TGGATGTATCTAACACTAACTTGGTG | 58.672 | 38.462 | 3.83 | 3.83 | 42.09 | 4.17 |
116 | 117 | 6.258068 | GGATGTATCTAACACTAACTTGGTGC | 59.742 | 42.308 | 5.24 | 0.00 | 42.09 | 5.01 |
117 | 118 | 6.354794 | TGTATCTAACACTAACTTGGTGCT | 57.645 | 37.500 | 5.24 | 0.00 | 38.14 | 4.40 |
118 | 119 | 7.470935 | TGTATCTAACACTAACTTGGTGCTA | 57.529 | 36.000 | 5.24 | 0.00 | 38.14 | 3.49 |
119 | 120 | 7.544622 | TGTATCTAACACTAACTTGGTGCTAG | 58.455 | 38.462 | 5.24 | 7.17 | 38.14 | 3.42 |
120 | 121 | 6.852420 | ATCTAACACTAACTTGGTGCTAGA | 57.148 | 37.500 | 16.37 | 16.37 | 42.56 | 2.43 |
121 | 122 | 6.852420 | TCTAACACTAACTTGGTGCTAGAT | 57.148 | 37.500 | 12.12 | 0.00 | 37.42 | 1.98 |
122 | 123 | 7.949690 | TCTAACACTAACTTGGTGCTAGATA | 57.050 | 36.000 | 12.12 | 0.00 | 37.42 | 1.98 |
123 | 124 | 8.534954 | TCTAACACTAACTTGGTGCTAGATAT | 57.465 | 34.615 | 12.12 | 0.00 | 37.42 | 1.63 |
124 | 125 | 9.636789 | TCTAACACTAACTTGGTGCTAGATATA | 57.363 | 33.333 | 12.12 | 0.00 | 37.42 | 0.86 |
127 | 128 | 8.713708 | ACACTAACTTGGTGCTAGATATATCT | 57.286 | 34.615 | 18.99 | 18.99 | 38.23 | 1.98 |
128 | 129 | 9.809395 | ACACTAACTTGGTGCTAGATATATCTA | 57.191 | 33.333 | 19.18 | 19.18 | 37.00 | 1.98 |
157 | 158 | 7.751768 | AGGAATAAACTTTTTCAGACAGAGG | 57.248 | 36.000 | 0.00 | 0.00 | 0.00 | 3.69 |
158 | 159 | 6.717084 | AGGAATAAACTTTTTCAGACAGAGGG | 59.283 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
159 | 160 | 6.715264 | GGAATAAACTTTTTCAGACAGAGGGA | 59.285 | 38.462 | 0.00 | 0.00 | 0.00 | 4.20 |
160 | 161 | 7.094592 | GGAATAAACTTTTTCAGACAGAGGGAG | 60.095 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
161 | 162 | 4.779993 | AACTTTTTCAGACAGAGGGAGT | 57.220 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
162 | 163 | 5.888982 | AACTTTTTCAGACAGAGGGAGTA | 57.111 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
163 | 164 | 5.216614 | ACTTTTTCAGACAGAGGGAGTAC | 57.783 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
164 | 165 | 4.654262 | ACTTTTTCAGACAGAGGGAGTACA | 59.346 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
165 | 166 | 5.308237 | ACTTTTTCAGACAGAGGGAGTACAT | 59.692 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
166 | 167 | 5.407407 | TTTTCAGACAGAGGGAGTACATC | 57.593 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
167 | 168 | 3.739401 | TCAGACAGAGGGAGTACATCA | 57.261 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
168 | 169 | 3.625853 | TCAGACAGAGGGAGTACATCAG | 58.374 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
169 | 170 | 3.267031 | TCAGACAGAGGGAGTACATCAGA | 59.733 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
170 | 171 | 4.019858 | CAGACAGAGGGAGTACATCAGAA | 58.980 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
171 | 172 | 4.097741 | CAGACAGAGGGAGTACATCAGAAG | 59.902 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
172 | 173 | 4.017958 | AGACAGAGGGAGTACATCAGAAGA | 60.018 | 45.833 | 0.00 | 0.00 | 0.00 | 2.87 |
173 | 174 | 4.877773 | ACAGAGGGAGTACATCAGAAGAT | 58.122 | 43.478 | 0.00 | 0.00 | 33.87 | 2.40 |
174 | 175 | 4.892934 | ACAGAGGGAGTACATCAGAAGATC | 59.107 | 45.833 | 0.00 | 0.00 | 30.20 | 2.75 |
175 | 176 | 4.280677 | CAGAGGGAGTACATCAGAAGATCC | 59.719 | 50.000 | 0.00 | 0.00 | 30.20 | 3.36 |
176 | 177 | 4.169856 | AGAGGGAGTACATCAGAAGATCCT | 59.830 | 45.833 | 0.00 | 0.00 | 30.20 | 3.24 |
177 | 178 | 5.374154 | AGAGGGAGTACATCAGAAGATCCTA | 59.626 | 44.000 | 0.00 | 0.00 | 30.20 | 2.94 |
178 | 179 | 6.031964 | AGGGAGTACATCAGAAGATCCTAA | 57.968 | 41.667 | 0.00 | 0.00 | 30.20 | 2.69 |
179 | 180 | 6.444704 | AGGGAGTACATCAGAAGATCCTAAA | 58.555 | 40.000 | 0.00 | 0.00 | 30.20 | 1.85 |
180 | 181 | 6.903534 | AGGGAGTACATCAGAAGATCCTAAAA | 59.096 | 38.462 | 0.00 | 0.00 | 30.20 | 1.52 |
181 | 182 | 7.570607 | AGGGAGTACATCAGAAGATCCTAAAAT | 59.429 | 37.037 | 0.00 | 0.00 | 30.20 | 1.82 |
182 | 183 | 7.875554 | GGGAGTACATCAGAAGATCCTAAAATC | 59.124 | 40.741 | 0.00 | 0.00 | 30.20 | 2.17 |
183 | 184 | 7.875554 | GGAGTACATCAGAAGATCCTAAAATCC | 59.124 | 40.741 | 0.00 | 0.00 | 30.20 | 3.01 |
184 | 185 | 8.560124 | AGTACATCAGAAGATCCTAAAATCCT | 57.440 | 34.615 | 0.00 | 0.00 | 30.20 | 3.24 |
185 | 186 | 8.646900 | AGTACATCAGAAGATCCTAAAATCCTC | 58.353 | 37.037 | 0.00 | 0.00 | 30.20 | 3.71 |
186 | 187 | 7.688918 | ACATCAGAAGATCCTAAAATCCTCT | 57.311 | 36.000 | 0.00 | 0.00 | 30.20 | 3.69 |
187 | 188 | 8.100135 | ACATCAGAAGATCCTAAAATCCTCTT | 57.900 | 34.615 | 0.00 | 0.00 | 30.20 | 2.85 |
188 | 189 | 8.555729 | ACATCAGAAGATCCTAAAATCCTCTTT | 58.444 | 33.333 | 0.00 | 0.00 | 30.20 | 2.52 |
191 | 192 | 8.198109 | TCAGAAGATCCTAAAATCCTCTTTACG | 58.802 | 37.037 | 0.00 | 0.00 | 26.37 | 3.18 |
192 | 193 | 7.439655 | CAGAAGATCCTAAAATCCTCTTTACGG | 59.560 | 40.741 | 0.00 | 0.00 | 26.37 | 4.02 |
193 | 194 | 6.809976 | AGATCCTAAAATCCTCTTTACGGT | 57.190 | 37.500 | 0.00 | 0.00 | 0.00 | 4.83 |
201 | 202 | 5.532664 | AATCCTCTTTACGGTAGTCCATC | 57.467 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
212 | 213 | 2.752903 | GGTAGTCCATCGCCACAATTTT | 59.247 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
218 | 219 | 2.160615 | CCATCGCCACAATTTTGTCGTA | 59.839 | 45.455 | 0.00 | 0.00 | 39.91 | 3.43 |
238 | 239 | 7.399523 | GTCGTATGGACATGTTTAGAATGAAC | 58.600 | 38.462 | 0.00 | 0.00 | 45.36 | 3.18 |
243 | 244 | 5.473162 | TGGACATGTTTAGAATGAACCACAG | 59.527 | 40.000 | 0.00 | 0.00 | 33.67 | 3.66 |
291 | 298 | 6.004574 | TCTTTCACTAGTCTTGCTCTCTGTA | 58.995 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
305 | 312 | 5.105351 | TGCTCTCTGTATCGATCCAGAAAAA | 60.105 | 40.000 | 19.67 | 8.99 | 37.27 | 1.94 |
331 | 338 | 2.230660 | CAGGAATTAAAGATCCGGGGC | 58.769 | 52.381 | 0.00 | 0.00 | 40.78 | 5.80 |
430 | 2365 | 4.861102 | AAGAAGGCAAATGACAAGAAGG | 57.139 | 40.909 | 0.00 | 0.00 | 0.00 | 3.46 |
435 | 2370 | 0.454957 | CAAATGACAAGAAGGCGCGG | 60.455 | 55.000 | 8.83 | 0.00 | 0.00 | 6.46 |
686 | 2791 | 0.095417 | GCATCAACCGCTCTTTCGTC | 59.905 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
705 | 2810 | 2.864343 | GTCCATGCAATGTACGTACTCC | 59.136 | 50.000 | 25.12 | 11.68 | 44.81 | 3.85 |
738 | 2843 | 1.264288 | CCGTTGTTTCTTGAGAGGCAC | 59.736 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
832 | 2941 | 5.560005 | CGCAATTGGATCGACAAATAATACG | 59.440 | 40.000 | 7.72 | 0.00 | 33.48 | 3.06 |
888 | 2997 | 1.198094 | TGGACCCGCAAATCTCCAGA | 61.198 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
971 | 3081 | 1.409427 | AGTGATACGGACTAGCAAGCC | 59.591 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
987 | 3097 | 1.729586 | AGCCCTGTTGTCTTCCACTA | 58.270 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
988 | 3098 | 1.348036 | AGCCCTGTTGTCTTCCACTAC | 59.652 | 52.381 | 0.00 | 0.00 | 0.00 | 2.73 |
989 | 3099 | 1.348036 | GCCCTGTTGTCTTCCACTACT | 59.652 | 52.381 | 0.00 | 0.00 | 32.43 | 2.57 |
998 | 3108 | 1.006758 | TCTTCCACTACTCATCCCGGT | 59.993 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
1030 | 3140 | 3.530910 | AAGCTCAACCCCACGTCCG | 62.531 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
1133 | 3243 | 0.528470 | TACATGCACGACGTGATGGA | 59.472 | 50.000 | 31.08 | 22.49 | 38.75 | 3.41 |
1161 | 3271 | 4.408821 | ATGATGGTGGTGCGCGGT | 62.409 | 61.111 | 8.83 | 0.00 | 0.00 | 5.68 |
1281 | 3391 | 4.475135 | GTCGCCTCCTCCAAGGGC | 62.475 | 72.222 | 0.00 | 0.00 | 42.18 | 5.19 |
1431 | 3541 | 2.464459 | GCAGTTCCGGATGGCGAAG | 61.464 | 63.158 | 4.15 | 0.00 | 34.14 | 3.79 |
1522 | 3639 | 2.267642 | CCCACTCGGCCGATTCAA | 59.732 | 61.111 | 31.19 | 5.64 | 0.00 | 2.69 |
1549 | 3670 | 2.741092 | GTCGGTGACCTCTGGCAA | 59.259 | 61.111 | 0.00 | 0.00 | 0.00 | 4.52 |
1567 | 3688 | 2.725490 | CAACATTGCGTAAGTGTTGCA | 58.275 | 42.857 | 19.65 | 0.00 | 44.00 | 4.08 |
1615 | 3736 | 3.119316 | TGTTGCACCTTGTGTTACAAAGG | 60.119 | 43.478 | 18.06 | 18.06 | 37.69 | 3.11 |
1645 | 3769 | 6.861055 | ACGTGGATGTTTGTGATATTGTTTTC | 59.139 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
1646 | 3770 | 6.307800 | CGTGGATGTTTGTGATATTGTTTTCC | 59.692 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
1647 | 3771 | 6.307800 | GTGGATGTTTGTGATATTGTTTTCCG | 59.692 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
1651 | 3775 | 6.565234 | TGTTTGTGATATTGTTTTCCGTGTT | 58.435 | 32.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1653 | 3777 | 7.221067 | TGTTTGTGATATTGTTTTCCGTGTTTC | 59.779 | 33.333 | 0.00 | 0.00 | 0.00 | 2.78 |
1655 | 3779 | 7.033530 | TGTGATATTGTTTTCCGTGTTTCTT | 57.966 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1681 | 3835 | 9.528018 | TTTATCTTGTCATTCTTTTTGTTGGTC | 57.472 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
1682 | 3836 | 6.773976 | TCTTGTCATTCTTTTTGTTGGTCT | 57.226 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
1683 | 3837 | 7.873719 | TCTTGTCATTCTTTTTGTTGGTCTA | 57.126 | 32.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1934 | 4095 | 0.533085 | TCCGCATTGTCCGTTTCACA | 60.533 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1963 | 4134 | 1.810606 | CGCCGATGTCTCCTAGGCAT | 61.811 | 60.000 | 2.96 | 1.45 | 44.40 | 4.40 |
1970 | 4141 | 0.461961 | GTCTCCTAGGCATGCTTCGT | 59.538 | 55.000 | 18.92 | 2.64 | 0.00 | 3.85 |
2032 | 4208 | 0.608640 | GGATCCACAACTCGGTGACT | 59.391 | 55.000 | 6.95 | 0.00 | 41.32 | 3.41 |
2061 | 4250 | 4.388499 | CTTCGGGTGGGTCGTGGG | 62.388 | 72.222 | 0.00 | 0.00 | 0.00 | 4.61 |
2101 | 4290 | 0.680618 | TGTGGGGTTATCGTCGTGTT | 59.319 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2127 | 4336 | 1.441016 | GCCATATTGCGCGCTAAGC | 60.441 | 57.895 | 33.29 | 21.16 | 43.95 | 3.09 |
2233 | 4463 | 4.990288 | GTGTCGTTCACCTCCCTC | 57.010 | 61.111 | 3.00 | 0.00 | 40.84 | 4.30 |
2234 | 4464 | 1.292541 | GTGTCGTTCACCTCCCTCC | 59.707 | 63.158 | 3.00 | 0.00 | 40.84 | 4.30 |
2235 | 4465 | 1.152419 | TGTCGTTCACCTCCCTCCA | 60.152 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
2236 | 4466 | 0.761323 | TGTCGTTCACCTCCCTCCAA | 60.761 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2237 | 4467 | 0.320508 | GTCGTTCACCTCCCTCCAAC | 60.321 | 60.000 | 0.00 | 0.00 | 0.00 | 3.77 |
2238 | 4468 | 0.761323 | TCGTTCACCTCCCTCCAACA | 60.761 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2239 | 4469 | 0.602905 | CGTTCACCTCCCTCCAACAC | 60.603 | 60.000 | 0.00 | 0.00 | 0.00 | 3.32 |
2240 | 4470 | 0.472471 | GTTCACCTCCCTCCAACACA | 59.528 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2241 | 4471 | 1.133915 | GTTCACCTCCCTCCAACACAA | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
2242 | 4472 | 1.444933 | TCACCTCCCTCCAACACAAT | 58.555 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2243 | 4473 | 2.626785 | TCACCTCCCTCCAACACAATA | 58.373 | 47.619 | 0.00 | 0.00 | 0.00 | 1.90 |
2244 | 4474 | 2.983192 | TCACCTCCCTCCAACACAATAA | 59.017 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
2245 | 4475 | 3.396276 | TCACCTCCCTCCAACACAATAAA | 59.604 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
2246 | 4476 | 3.758554 | CACCTCCCTCCAACACAATAAAG | 59.241 | 47.826 | 0.00 | 0.00 | 0.00 | 1.85 |
2247 | 4477 | 2.755103 | CCTCCCTCCAACACAATAAAGC | 59.245 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2248 | 4478 | 3.420893 | CTCCCTCCAACACAATAAAGCA | 58.579 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
2249 | 4479 | 3.826157 | CTCCCTCCAACACAATAAAGCAA | 59.174 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
2250 | 4480 | 4.219115 | TCCCTCCAACACAATAAAGCAAA | 58.781 | 39.130 | 0.00 | 0.00 | 0.00 | 3.68 |
2251 | 4481 | 4.651503 | TCCCTCCAACACAATAAAGCAAAA | 59.348 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
2252 | 4482 | 4.990426 | CCCTCCAACACAATAAAGCAAAAG | 59.010 | 41.667 | 0.00 | 0.00 | 0.00 | 2.27 |
2253 | 4483 | 4.448732 | CCTCCAACACAATAAAGCAAAAGC | 59.551 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2254 | 4484 | 4.047822 | TCCAACACAATAAAGCAAAAGCG | 58.952 | 39.130 | 0.00 | 0.00 | 0.00 | 4.68 |
2255 | 4485 | 3.184178 | CCAACACAATAAAGCAAAAGCGG | 59.816 | 43.478 | 0.00 | 0.00 | 0.00 | 5.52 |
2256 | 4486 | 3.025287 | ACACAATAAAGCAAAAGCGGG | 57.975 | 42.857 | 0.00 | 0.00 | 0.00 | 6.13 |
2257 | 4487 | 2.625790 | ACACAATAAAGCAAAAGCGGGA | 59.374 | 40.909 | 0.00 | 0.00 | 0.00 | 5.14 |
2258 | 4488 | 2.986479 | CACAATAAAGCAAAAGCGGGAC | 59.014 | 45.455 | 0.00 | 0.00 | 0.00 | 4.46 |
2259 | 4489 | 2.625790 | ACAATAAAGCAAAAGCGGGACA | 59.374 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
2260 | 4490 | 3.258123 | ACAATAAAGCAAAAGCGGGACAT | 59.742 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
2261 | 4491 | 4.461081 | ACAATAAAGCAAAAGCGGGACATA | 59.539 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
2262 | 4492 | 5.127031 | ACAATAAAGCAAAAGCGGGACATAT | 59.873 | 36.000 | 0.00 | 0.00 | 0.00 | 1.78 |
2263 | 4493 | 6.320164 | ACAATAAAGCAAAAGCGGGACATATA | 59.680 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
2264 | 4494 | 4.900635 | AAAGCAAAAGCGGGACATATAG | 57.099 | 40.909 | 0.00 | 0.00 | 0.00 | 1.31 |
2265 | 4495 | 3.560636 | AGCAAAAGCGGGACATATAGT | 57.439 | 42.857 | 0.00 | 0.00 | 0.00 | 2.12 |
2266 | 4496 | 3.206150 | AGCAAAAGCGGGACATATAGTG | 58.794 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
2267 | 4497 | 2.943033 | GCAAAAGCGGGACATATAGTGT | 59.057 | 45.455 | 0.00 | 0.00 | 45.83 | 3.55 |
2268 | 4498 | 3.377172 | GCAAAAGCGGGACATATAGTGTT | 59.623 | 43.478 | 0.00 | 0.00 | 42.36 | 3.32 |
2269 | 4499 | 4.142469 | GCAAAAGCGGGACATATAGTGTTT | 60.142 | 41.667 | 0.00 | 0.00 | 42.36 | 2.83 |
2270 | 4500 | 5.621329 | GCAAAAGCGGGACATATAGTGTTTT | 60.621 | 40.000 | 0.00 | 0.00 | 42.36 | 2.43 |
2271 | 4501 | 6.403855 | GCAAAAGCGGGACATATAGTGTTTTA | 60.404 | 38.462 | 0.00 | 0.00 | 42.36 | 1.52 |
2272 | 4502 | 6.673154 | AAAGCGGGACATATAGTGTTTTAC | 57.327 | 37.500 | 0.00 | 0.00 | 42.36 | 2.01 |
2273 | 4503 | 5.609533 | AGCGGGACATATAGTGTTTTACT | 57.390 | 39.130 | 0.00 | 0.00 | 42.36 | 2.24 |
2274 | 4504 | 5.598769 | AGCGGGACATATAGTGTTTTACTC | 58.401 | 41.667 | 0.00 | 0.00 | 42.36 | 2.59 |
2275 | 4505 | 4.748600 | GCGGGACATATAGTGTTTTACTCC | 59.251 | 45.833 | 0.00 | 0.00 | 42.36 | 3.85 |
2276 | 4506 | 5.295152 | CGGGACATATAGTGTTTTACTCCC | 58.705 | 45.833 | 0.00 | 0.00 | 42.36 | 4.30 |
2277 | 4507 | 5.070047 | CGGGACATATAGTGTTTTACTCCCT | 59.930 | 44.000 | 0.00 | 0.00 | 42.36 | 4.20 |
2278 | 4508 | 6.522946 | GGGACATATAGTGTTTTACTCCCTC | 58.477 | 44.000 | 0.00 | 0.00 | 42.36 | 4.30 |
2279 | 4509 | 6.099269 | GGGACATATAGTGTTTTACTCCCTCA | 59.901 | 42.308 | 0.00 | 0.00 | 42.36 | 3.86 |
2280 | 4510 | 7.365295 | GGGACATATAGTGTTTTACTCCCTCAA | 60.365 | 40.741 | 0.00 | 0.00 | 42.36 | 3.02 |
2281 | 4511 | 8.211629 | GGACATATAGTGTTTTACTCCCTCAAT | 58.788 | 37.037 | 0.00 | 0.00 | 42.36 | 2.57 |
2282 | 4512 | 9.614792 | GACATATAGTGTTTTACTCCCTCAATT | 57.385 | 33.333 | 0.00 | 0.00 | 42.36 | 2.32 |
2283 | 4513 | 9.975218 | ACATATAGTGTTTTACTCCCTCAATTT | 57.025 | 29.630 | 0.00 | 0.00 | 38.01 | 1.82 |
2287 | 4517 | 7.898014 | AGTGTTTTACTCCCTCAATTTCTTT | 57.102 | 32.000 | 0.00 | 0.00 | 33.17 | 2.52 |
2288 | 4518 | 8.306313 | AGTGTTTTACTCCCTCAATTTCTTTT | 57.694 | 30.769 | 0.00 | 0.00 | 33.17 | 2.27 |
2289 | 4519 | 8.414003 | AGTGTTTTACTCCCTCAATTTCTTTTC | 58.586 | 33.333 | 0.00 | 0.00 | 33.17 | 2.29 |
2290 | 4520 | 8.194769 | GTGTTTTACTCCCTCAATTTCTTTTCA | 58.805 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2291 | 4521 | 8.413229 | TGTTTTACTCCCTCAATTTCTTTTCAG | 58.587 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
2292 | 4522 | 8.414003 | GTTTTACTCCCTCAATTTCTTTTCAGT | 58.586 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2293 | 4523 | 8.533569 | TTTACTCCCTCAATTTCTTTTCAGTT | 57.466 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
2294 | 4524 | 8.533569 | TTACTCCCTCAATTTCTTTTCAGTTT | 57.466 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
2295 | 4525 | 6.809869 | ACTCCCTCAATTTCTTTTCAGTTTG | 58.190 | 36.000 | 0.00 | 0.00 | 0.00 | 2.93 |
2296 | 4526 | 5.600696 | TCCCTCAATTTCTTTTCAGTTTGC | 58.399 | 37.500 | 0.00 | 0.00 | 0.00 | 3.68 |
2297 | 4527 | 5.128499 | TCCCTCAATTTCTTTTCAGTTTGCA | 59.872 | 36.000 | 0.00 | 0.00 | 0.00 | 4.08 |
2298 | 4528 | 5.993441 | CCCTCAATTTCTTTTCAGTTTGCAT | 59.007 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
2299 | 4529 | 7.015098 | TCCCTCAATTTCTTTTCAGTTTGCATA | 59.985 | 33.333 | 0.00 | 0.00 | 0.00 | 3.14 |
2300 | 4530 | 7.820872 | CCCTCAATTTCTTTTCAGTTTGCATAT | 59.179 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
2301 | 4531 | 9.859427 | CCTCAATTTCTTTTCAGTTTGCATATA | 57.141 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
2309 | 4539 | 9.859427 | TCTTTTCAGTTTGCATATAAGATTTGG | 57.141 | 29.630 | 0.00 | 0.00 | 0.00 | 3.28 |
2310 | 4540 | 9.643693 | CTTTTCAGTTTGCATATAAGATTTGGT | 57.356 | 29.630 | 0.00 | 0.00 | 0.00 | 3.67 |
2311 | 4541 | 9.638239 | TTTTCAGTTTGCATATAAGATTTGGTC | 57.362 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
2312 | 4542 | 7.936496 | TCAGTTTGCATATAAGATTTGGTCA | 57.064 | 32.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2313 | 4543 | 8.347004 | TCAGTTTGCATATAAGATTTGGTCAA | 57.653 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
2314 | 4544 | 8.801299 | TCAGTTTGCATATAAGATTTGGTCAAA | 58.199 | 29.630 | 0.00 | 0.00 | 34.46 | 2.69 |
2315 | 4545 | 9.421806 | CAGTTTGCATATAAGATTTGGTCAAAA | 57.578 | 29.630 | 0.00 | 0.00 | 33.56 | 2.44 |
2316 | 4546 | 9.643693 | AGTTTGCATATAAGATTTGGTCAAAAG | 57.356 | 29.630 | 0.00 | 0.00 | 33.56 | 2.27 |
2317 | 4547 | 9.423061 | GTTTGCATATAAGATTTGGTCAAAAGT | 57.577 | 29.630 | 0.00 | 0.00 | 33.56 | 2.66 |
2318 | 4548 | 9.638239 | TTTGCATATAAGATTTGGTCAAAAGTC | 57.362 | 29.630 | 0.00 | 0.00 | 33.56 | 3.01 |
2319 | 4549 | 8.347004 | TGCATATAAGATTTGGTCAAAAGTCA | 57.653 | 30.769 | 0.00 | 0.00 | 33.56 | 3.41 |
2320 | 4550 | 8.801299 | TGCATATAAGATTTGGTCAAAAGTCAA | 58.199 | 29.630 | 0.00 | 0.00 | 33.56 | 3.18 |
2321 | 4551 | 9.638239 | GCATATAAGATTTGGTCAAAAGTCAAA | 57.362 | 29.630 | 0.00 | 0.00 | 35.30 | 2.69 |
2326 | 4556 | 7.832503 | AGATTTGGTCAAAAGTCAAACTTTG | 57.167 | 32.000 | 5.88 | 0.00 | 46.78 | 2.77 |
2327 | 4557 | 7.386059 | AGATTTGGTCAAAAGTCAAACTTTGT | 58.614 | 30.769 | 5.88 | 0.00 | 46.78 | 2.83 |
2328 | 4558 | 8.527810 | AGATTTGGTCAAAAGTCAAACTTTGTA | 58.472 | 29.630 | 5.88 | 0.00 | 46.78 | 2.41 |
2329 | 4559 | 9.145865 | GATTTGGTCAAAAGTCAAACTTTGTAA | 57.854 | 29.630 | 5.88 | 0.00 | 46.78 | 2.41 |
2330 | 4560 | 8.888579 | TTTGGTCAAAAGTCAAACTTTGTAAA | 57.111 | 26.923 | 5.88 | 2.41 | 46.78 | 2.01 |
2331 | 4561 | 8.527567 | TTGGTCAAAAGTCAAACTTTGTAAAG | 57.472 | 30.769 | 5.88 | 2.94 | 46.78 | 1.85 |
2332 | 4562 | 7.662897 | TGGTCAAAAGTCAAACTTTGTAAAGT | 58.337 | 30.769 | 5.88 | 4.25 | 46.78 | 2.66 |
2346 | 4576 | 8.051901 | ACTTTGTAAAGTTTGACTAGCTTTGT | 57.948 | 30.769 | 8.55 | 0.00 | 46.52 | 2.83 |
2347 | 4577 | 9.169592 | ACTTTGTAAAGTTTGACTAGCTTTGTA | 57.830 | 29.630 | 8.55 | 0.00 | 46.52 | 2.41 |
2348 | 4578 | 9.651718 | CTTTGTAAAGTTTGACTAGCTTTGTAG | 57.348 | 33.333 | 8.55 | 0.00 | 34.69 | 2.74 |
2349 | 4579 | 7.724305 | TGTAAAGTTTGACTAGCTTTGTAGG | 57.276 | 36.000 | 8.55 | 0.00 | 34.69 | 3.18 |
2350 | 4580 | 7.502696 | TGTAAAGTTTGACTAGCTTTGTAGGA | 58.497 | 34.615 | 8.55 | 0.00 | 34.69 | 2.94 |
2351 | 4581 | 7.988599 | TGTAAAGTTTGACTAGCTTTGTAGGAA | 59.011 | 33.333 | 8.55 | 0.00 | 34.69 | 3.36 |
2352 | 4582 | 7.875327 | AAAGTTTGACTAGCTTTGTAGGAAA | 57.125 | 32.000 | 0.00 | 0.00 | 32.03 | 3.13 |
2353 | 4583 | 7.875327 | AAGTTTGACTAGCTTTGTAGGAAAA | 57.125 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2354 | 4584 | 7.497925 | AGTTTGACTAGCTTTGTAGGAAAAG | 57.502 | 36.000 | 0.00 | 0.00 | 39.66 | 2.27 |
2355 | 4585 | 7.280356 | AGTTTGACTAGCTTTGTAGGAAAAGA | 58.720 | 34.615 | 0.00 | 0.00 | 39.12 | 2.52 |
2356 | 4586 | 7.939588 | AGTTTGACTAGCTTTGTAGGAAAAGAT | 59.060 | 33.333 | 0.00 | 0.00 | 39.12 | 2.40 |
2357 | 4587 | 9.216117 | GTTTGACTAGCTTTGTAGGAAAAGATA | 57.784 | 33.333 | 0.00 | 0.00 | 39.12 | 1.98 |
2358 | 4588 | 9.959721 | TTTGACTAGCTTTGTAGGAAAAGATAT | 57.040 | 29.630 | 0.00 | 0.00 | 37.39 | 1.63 |
2359 | 4589 | 9.601217 | TTGACTAGCTTTGTAGGAAAAGATATC | 57.399 | 33.333 | 0.00 | 0.00 | 37.39 | 1.63 |
2360 | 4590 | 8.758829 | TGACTAGCTTTGTAGGAAAAGATATCA | 58.241 | 33.333 | 5.32 | 3.18 | 37.39 | 2.15 |
2361 | 4591 | 9.601217 | GACTAGCTTTGTAGGAAAAGATATCAA | 57.399 | 33.333 | 5.32 | 0.00 | 37.39 | 2.57 |
2466 | 4696 | 3.625314 | TTTTTGTGGGGGCAGACTT | 57.375 | 47.368 | 0.00 | 0.00 | 0.00 | 3.01 |
2467 | 4697 | 1.408969 | TTTTTGTGGGGGCAGACTTC | 58.591 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2468 | 4698 | 0.260230 | TTTTGTGGGGGCAGACTTCA | 59.740 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2469 | 4699 | 0.467290 | TTTGTGGGGGCAGACTTCAC | 60.467 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2470 | 4700 | 2.034221 | GTGGGGGCAGACTTCACC | 59.966 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
2471 | 4701 | 2.121963 | TGGGGGCAGACTTCACCT | 60.122 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
2472 | 4702 | 1.774217 | TGGGGGCAGACTTCACCTT | 60.774 | 57.895 | 0.00 | 0.00 | 0.00 | 3.50 |
2473 | 4703 | 1.002011 | GGGGGCAGACTTCACCTTC | 60.002 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
2474 | 4704 | 1.761174 | GGGGCAGACTTCACCTTCA | 59.239 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
2475 | 4705 | 0.329596 | GGGGCAGACTTCACCTTCAT | 59.670 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2476 | 4706 | 1.559682 | GGGGCAGACTTCACCTTCATA | 59.440 | 52.381 | 0.00 | 0.00 | 0.00 | 2.15 |
2477 | 4707 | 2.173569 | GGGGCAGACTTCACCTTCATAT | 59.826 | 50.000 | 0.00 | 0.00 | 0.00 | 1.78 |
2478 | 4708 | 3.391296 | GGGGCAGACTTCACCTTCATATA | 59.609 | 47.826 | 0.00 | 0.00 | 0.00 | 0.86 |
2479 | 4709 | 4.141482 | GGGGCAGACTTCACCTTCATATAA | 60.141 | 45.833 | 0.00 | 0.00 | 0.00 | 0.98 |
2480 | 4710 | 4.816925 | GGGCAGACTTCACCTTCATATAAC | 59.183 | 45.833 | 0.00 | 0.00 | 0.00 | 1.89 |
2481 | 4711 | 4.508124 | GGCAGACTTCACCTTCATATAACG | 59.492 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
2482 | 4712 | 5.109903 | GCAGACTTCACCTTCATATAACGT | 58.890 | 41.667 | 0.00 | 0.00 | 0.00 | 3.99 |
2483 | 4713 | 6.270815 | GCAGACTTCACCTTCATATAACGTA | 58.729 | 40.000 | 0.00 | 0.00 | 0.00 | 3.57 |
2484 | 4714 | 6.755141 | GCAGACTTCACCTTCATATAACGTAA | 59.245 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
2485 | 4715 | 7.254017 | GCAGACTTCACCTTCATATAACGTAAC | 60.254 | 40.741 | 0.00 | 0.00 | 0.00 | 2.50 |
2486 | 4716 | 7.222224 | CAGACTTCACCTTCATATAACGTAACC | 59.778 | 40.741 | 0.00 | 0.00 | 0.00 | 2.85 |
2487 | 4717 | 6.038356 | ACTTCACCTTCATATAACGTAACCG | 58.962 | 40.000 | 0.00 | 0.00 | 40.83 | 4.44 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 3.276857 | TCGCTACTCGAGGACTACATTT | 58.723 | 45.455 | 18.41 | 0.00 | 43.16 | 2.32 |
1 | 2 | 2.915349 | TCGCTACTCGAGGACTACATT | 58.085 | 47.619 | 18.41 | 0.00 | 43.16 | 2.71 |
18 | 19 | 1.483424 | GGCTCGTCACAGCTATTCGC | 61.483 | 60.000 | 0.00 | 0.00 | 39.58 | 4.70 |
19 | 20 | 0.179137 | TGGCTCGTCACAGCTATTCG | 60.179 | 55.000 | 0.00 | 0.00 | 39.58 | 3.34 |
20 | 21 | 2.010145 | TTGGCTCGTCACAGCTATTC | 57.990 | 50.000 | 0.00 | 0.00 | 39.58 | 1.75 |
21 | 22 | 2.028112 | TCTTTGGCTCGTCACAGCTATT | 60.028 | 45.455 | 0.00 | 0.00 | 39.58 | 1.73 |
22 | 23 | 1.550524 | TCTTTGGCTCGTCACAGCTAT | 59.449 | 47.619 | 0.00 | 0.00 | 39.58 | 2.97 |
23 | 24 | 0.966179 | TCTTTGGCTCGTCACAGCTA | 59.034 | 50.000 | 0.00 | 0.00 | 39.58 | 3.32 |
24 | 25 | 0.320247 | CTCTTTGGCTCGTCACAGCT | 60.320 | 55.000 | 0.21 | 0.00 | 39.58 | 4.24 |
25 | 26 | 0.601311 | ACTCTTTGGCTCGTCACAGC | 60.601 | 55.000 | 0.00 | 0.00 | 38.84 | 4.40 |
26 | 27 | 1.871080 | AACTCTTTGGCTCGTCACAG | 58.129 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
27 | 28 | 2.364324 | AGTAACTCTTTGGCTCGTCACA | 59.636 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
28 | 29 | 2.987821 | GAGTAACTCTTTGGCTCGTCAC | 59.012 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
29 | 30 | 2.029290 | GGAGTAACTCTTTGGCTCGTCA | 60.029 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
30 | 31 | 2.608268 | GGAGTAACTCTTTGGCTCGTC | 58.392 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
31 | 32 | 1.275573 | GGGAGTAACTCTTTGGCTCGT | 59.724 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
32 | 33 | 1.550976 | AGGGAGTAACTCTTTGGCTCG | 59.449 | 52.381 | 0.00 | 0.00 | 0.00 | 5.03 |
33 | 34 | 2.093394 | GGAGGGAGTAACTCTTTGGCTC | 60.093 | 54.545 | 0.00 | 0.00 | 35.34 | 4.70 |
34 | 35 | 1.909986 | GGAGGGAGTAACTCTTTGGCT | 59.090 | 52.381 | 0.00 | 0.00 | 35.34 | 4.75 |
35 | 36 | 1.405661 | CGGAGGGAGTAACTCTTTGGC | 60.406 | 57.143 | 0.00 | 0.00 | 35.34 | 4.52 |
36 | 37 | 1.900486 | ACGGAGGGAGTAACTCTTTGG | 59.100 | 52.381 | 0.00 | 0.00 | 35.34 | 3.28 |
37 | 38 | 2.094130 | GGACGGAGGGAGTAACTCTTTG | 60.094 | 54.545 | 0.00 | 0.00 | 35.34 | 2.77 |
38 | 39 | 2.177734 | GGACGGAGGGAGTAACTCTTT | 58.822 | 52.381 | 0.00 | 0.00 | 35.34 | 2.52 |
39 | 40 | 1.076677 | TGGACGGAGGGAGTAACTCTT | 59.923 | 52.381 | 0.00 | 0.00 | 35.34 | 2.85 |
40 | 41 | 0.702902 | TGGACGGAGGGAGTAACTCT | 59.297 | 55.000 | 0.00 | 0.00 | 35.34 | 3.24 |
41 | 42 | 1.553706 | TTGGACGGAGGGAGTAACTC | 58.446 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
42 | 43 | 2.019807 | TTTGGACGGAGGGAGTAACT | 57.980 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
43 | 44 | 2.845363 | TTTTGGACGGAGGGAGTAAC | 57.155 | 50.000 | 0.00 | 0.00 | 0.00 | 2.50 |
79 | 80 | 9.817809 | GTGTTAGATACATCCATTTAAGAGACA | 57.182 | 33.333 | 0.00 | 0.00 | 39.39 | 3.41 |
87 | 88 | 9.396022 | CCAAGTTAGTGTTAGATACATCCATTT | 57.604 | 33.333 | 0.00 | 0.00 | 39.39 | 2.32 |
88 | 89 | 8.548877 | ACCAAGTTAGTGTTAGATACATCCATT | 58.451 | 33.333 | 0.00 | 0.00 | 39.39 | 3.16 |
89 | 90 | 7.987458 | CACCAAGTTAGTGTTAGATACATCCAT | 59.013 | 37.037 | 0.00 | 0.00 | 39.39 | 3.41 |
90 | 91 | 7.327975 | CACCAAGTTAGTGTTAGATACATCCA | 58.672 | 38.462 | 0.00 | 0.00 | 39.39 | 3.41 |
91 | 92 | 6.258068 | GCACCAAGTTAGTGTTAGATACATCC | 59.742 | 42.308 | 3.37 | 0.00 | 39.39 | 3.51 |
92 | 93 | 7.042335 | AGCACCAAGTTAGTGTTAGATACATC | 58.958 | 38.462 | 3.37 | 0.00 | 39.39 | 3.06 |
93 | 94 | 6.947464 | AGCACCAAGTTAGTGTTAGATACAT | 58.053 | 36.000 | 3.37 | 0.00 | 39.39 | 2.29 |
94 | 95 | 6.354794 | AGCACCAAGTTAGTGTTAGATACA | 57.645 | 37.500 | 3.37 | 0.00 | 37.56 | 2.29 |
95 | 96 | 7.769220 | TCTAGCACCAAGTTAGTGTTAGATAC | 58.231 | 38.462 | 18.99 | 0.00 | 46.54 | 2.24 |
96 | 97 | 7.949690 | TCTAGCACCAAGTTAGTGTTAGATA | 57.050 | 36.000 | 18.99 | 4.07 | 46.54 | 1.98 |
97 | 98 | 6.852420 | TCTAGCACCAAGTTAGTGTTAGAT | 57.148 | 37.500 | 18.99 | 0.00 | 46.54 | 1.98 |
101 | 102 | 9.148879 | AGATATATCTAGCACCAAGTTAGTGTT | 57.851 | 33.333 | 13.76 | 0.00 | 34.97 | 3.32 |
102 | 103 | 8.713708 | AGATATATCTAGCACCAAGTTAGTGT | 57.286 | 34.615 | 13.76 | 0.00 | 34.97 | 3.55 |
131 | 132 | 9.284968 | CCTCTGTCTGAAAAAGTTTATTCCTTA | 57.715 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
132 | 133 | 7.231519 | CCCTCTGTCTGAAAAAGTTTATTCCTT | 59.768 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
133 | 134 | 6.717084 | CCCTCTGTCTGAAAAAGTTTATTCCT | 59.283 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
134 | 135 | 6.715264 | TCCCTCTGTCTGAAAAAGTTTATTCC | 59.285 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
135 | 136 | 7.445707 | ACTCCCTCTGTCTGAAAAAGTTTATTC | 59.554 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
136 | 137 | 7.290813 | ACTCCCTCTGTCTGAAAAAGTTTATT | 58.709 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
137 | 138 | 6.842676 | ACTCCCTCTGTCTGAAAAAGTTTAT | 58.157 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
138 | 139 | 6.248569 | ACTCCCTCTGTCTGAAAAAGTTTA | 57.751 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
139 | 140 | 5.117406 | ACTCCCTCTGTCTGAAAAAGTTT | 57.883 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
140 | 141 | 4.779993 | ACTCCCTCTGTCTGAAAAAGTT | 57.220 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
141 | 142 | 4.654262 | TGTACTCCCTCTGTCTGAAAAAGT | 59.346 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
142 | 143 | 5.215252 | TGTACTCCCTCTGTCTGAAAAAG | 57.785 | 43.478 | 0.00 | 0.00 | 0.00 | 2.27 |
143 | 144 | 5.306937 | TGATGTACTCCCTCTGTCTGAAAAA | 59.693 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
144 | 145 | 4.838423 | TGATGTACTCCCTCTGTCTGAAAA | 59.162 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
145 | 146 | 4.416516 | TGATGTACTCCCTCTGTCTGAAA | 58.583 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
146 | 147 | 4.019858 | CTGATGTACTCCCTCTGTCTGAA | 58.980 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
147 | 148 | 3.267031 | TCTGATGTACTCCCTCTGTCTGA | 59.733 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
148 | 149 | 3.625853 | TCTGATGTACTCCCTCTGTCTG | 58.374 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
149 | 150 | 4.017958 | TCTTCTGATGTACTCCCTCTGTCT | 60.018 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
150 | 151 | 4.274147 | TCTTCTGATGTACTCCCTCTGTC | 58.726 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
151 | 152 | 4.323569 | TCTTCTGATGTACTCCCTCTGT | 57.676 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
152 | 153 | 4.280677 | GGATCTTCTGATGTACTCCCTCTG | 59.719 | 50.000 | 0.00 | 0.00 | 32.19 | 3.35 |
153 | 154 | 4.169856 | AGGATCTTCTGATGTACTCCCTCT | 59.830 | 45.833 | 0.00 | 0.00 | 32.19 | 3.69 |
154 | 155 | 4.479158 | AGGATCTTCTGATGTACTCCCTC | 58.521 | 47.826 | 0.00 | 0.00 | 32.19 | 4.30 |
155 | 156 | 4.551215 | AGGATCTTCTGATGTACTCCCT | 57.449 | 45.455 | 0.00 | 0.00 | 32.19 | 4.20 |
156 | 157 | 6.732896 | TTTAGGATCTTCTGATGTACTCCC | 57.267 | 41.667 | 0.00 | 0.00 | 32.19 | 4.30 |
157 | 158 | 7.875554 | GGATTTTAGGATCTTCTGATGTACTCC | 59.124 | 40.741 | 0.00 | 0.00 | 32.19 | 3.85 |
158 | 159 | 8.646900 | AGGATTTTAGGATCTTCTGATGTACTC | 58.353 | 37.037 | 0.00 | 0.00 | 32.19 | 2.59 |
159 | 160 | 8.560124 | AGGATTTTAGGATCTTCTGATGTACT | 57.440 | 34.615 | 0.00 | 0.00 | 32.19 | 2.73 |
160 | 161 | 8.646900 | AGAGGATTTTAGGATCTTCTGATGTAC | 58.353 | 37.037 | 0.00 | 0.00 | 39.95 | 2.90 |
161 | 162 | 8.789767 | AGAGGATTTTAGGATCTTCTGATGTA | 57.210 | 34.615 | 0.00 | 0.00 | 39.95 | 2.29 |
162 | 163 | 7.688918 | AGAGGATTTTAGGATCTTCTGATGT | 57.311 | 36.000 | 0.00 | 0.00 | 39.95 | 3.06 |
163 | 164 | 8.977267 | AAAGAGGATTTTAGGATCTTCTGATG | 57.023 | 34.615 | 1.05 | 0.00 | 40.38 | 3.07 |
165 | 166 | 8.198109 | CGTAAAGAGGATTTTAGGATCTTCTGA | 58.802 | 37.037 | 1.05 | 0.00 | 40.38 | 3.27 |
166 | 167 | 7.439655 | CCGTAAAGAGGATTTTAGGATCTTCTG | 59.560 | 40.741 | 1.05 | 0.00 | 40.38 | 3.02 |
167 | 168 | 7.125963 | ACCGTAAAGAGGATTTTAGGATCTTCT | 59.874 | 37.037 | 0.00 | 0.00 | 42.29 | 2.85 |
168 | 169 | 7.273712 | ACCGTAAAGAGGATTTTAGGATCTTC | 58.726 | 38.462 | 0.00 | 0.00 | 32.79 | 2.87 |
169 | 170 | 7.196637 | ACCGTAAAGAGGATTTTAGGATCTT | 57.803 | 36.000 | 0.00 | 0.00 | 32.79 | 2.40 |
170 | 171 | 6.809976 | ACCGTAAAGAGGATTTTAGGATCT | 57.190 | 37.500 | 0.00 | 0.00 | 32.79 | 2.75 |
171 | 172 | 7.724287 | ACTACCGTAAAGAGGATTTTAGGATC | 58.276 | 38.462 | 0.00 | 0.00 | 32.79 | 3.36 |
172 | 173 | 7.201983 | GGACTACCGTAAAGAGGATTTTAGGAT | 60.202 | 40.741 | 1.16 | 0.00 | 32.79 | 3.24 |
173 | 174 | 6.097412 | GGACTACCGTAAAGAGGATTTTAGGA | 59.903 | 42.308 | 1.16 | 0.00 | 32.79 | 2.94 |
174 | 175 | 6.127253 | TGGACTACCGTAAAGAGGATTTTAGG | 60.127 | 42.308 | 0.00 | 0.00 | 39.42 | 2.69 |
175 | 176 | 6.870769 | TGGACTACCGTAAAGAGGATTTTAG | 58.129 | 40.000 | 0.00 | 0.00 | 39.42 | 1.85 |
176 | 177 | 6.855763 | TGGACTACCGTAAAGAGGATTTTA | 57.144 | 37.500 | 0.00 | 0.00 | 39.42 | 1.52 |
177 | 178 | 5.750352 | TGGACTACCGTAAAGAGGATTTT | 57.250 | 39.130 | 0.00 | 0.00 | 39.42 | 1.82 |
178 | 179 | 5.451520 | CGATGGACTACCGTAAAGAGGATTT | 60.452 | 44.000 | 0.00 | 0.00 | 39.42 | 2.17 |
179 | 180 | 4.037684 | CGATGGACTACCGTAAAGAGGATT | 59.962 | 45.833 | 0.00 | 0.00 | 39.42 | 3.01 |
180 | 181 | 3.568853 | CGATGGACTACCGTAAAGAGGAT | 59.431 | 47.826 | 0.00 | 0.00 | 39.42 | 3.24 |
181 | 182 | 2.947652 | CGATGGACTACCGTAAAGAGGA | 59.052 | 50.000 | 0.00 | 0.00 | 39.42 | 3.71 |
182 | 183 | 2.543238 | GCGATGGACTACCGTAAAGAGG | 60.543 | 54.545 | 0.00 | 0.00 | 39.42 | 3.69 |
183 | 184 | 2.543238 | GGCGATGGACTACCGTAAAGAG | 60.543 | 54.545 | 0.00 | 0.00 | 39.42 | 2.85 |
184 | 185 | 1.406539 | GGCGATGGACTACCGTAAAGA | 59.593 | 52.381 | 0.00 | 0.00 | 39.42 | 2.52 |
185 | 186 | 1.135527 | TGGCGATGGACTACCGTAAAG | 59.864 | 52.381 | 0.00 | 0.00 | 39.42 | 1.85 |
186 | 187 | 1.135024 | GTGGCGATGGACTACCGTAAA | 60.135 | 52.381 | 0.00 | 0.00 | 39.42 | 2.01 |
187 | 188 | 0.457035 | GTGGCGATGGACTACCGTAA | 59.543 | 55.000 | 0.00 | 0.00 | 39.42 | 3.18 |
188 | 189 | 0.680601 | TGTGGCGATGGACTACCGTA | 60.681 | 55.000 | 0.00 | 0.00 | 39.42 | 4.02 |
189 | 190 | 1.537814 | TTGTGGCGATGGACTACCGT | 61.538 | 55.000 | 0.00 | 0.00 | 39.42 | 4.83 |
190 | 191 | 0.179084 | ATTGTGGCGATGGACTACCG | 60.179 | 55.000 | 0.00 | 0.00 | 39.42 | 4.02 |
191 | 192 | 2.038387 | AATTGTGGCGATGGACTACC | 57.962 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
192 | 193 | 3.190535 | ACAAAATTGTGGCGATGGACTAC | 59.809 | 43.478 | 0.00 | 0.00 | 40.49 | 2.73 |
193 | 194 | 3.417101 | ACAAAATTGTGGCGATGGACTA | 58.583 | 40.909 | 0.00 | 0.00 | 40.49 | 2.59 |
218 | 219 | 6.009589 | TGTGGTTCATTCTAAACATGTCCAT | 58.990 | 36.000 | 0.00 | 0.00 | 33.20 | 3.41 |
268 | 275 | 5.132897 | ACAGAGAGCAAGACTAGTGAAAG | 57.867 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
305 | 312 | 5.185056 | CCCGGATCTTTAATTCCTGTTGTTT | 59.815 | 40.000 | 0.73 | 0.00 | 0.00 | 2.83 |
314 | 321 | 1.145119 | AGGGCCCCGGATCTTTAATTC | 59.855 | 52.381 | 21.43 | 0.00 | 0.00 | 2.17 |
318 | 325 | 2.076184 | CCAGGGCCCCGGATCTTTA | 61.076 | 63.158 | 20.77 | 0.00 | 0.00 | 1.85 |
331 | 338 | 3.625897 | TGAGGTGTCGTGCCAGGG | 61.626 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
430 | 2365 | 1.369091 | ATTTGTCTGGTGATCCGCGC | 61.369 | 55.000 | 0.00 | 0.00 | 36.30 | 6.86 |
435 | 2370 | 6.650807 | TCTGTTCAGTAATTTGTCTGGTGATC | 59.349 | 38.462 | 0.00 | 0.00 | 33.13 | 2.92 |
594 | 2699 | 5.336372 | GCTGTCTTGTCAGTATTGTCTCTCT | 60.336 | 44.000 | 0.00 | 0.00 | 37.70 | 3.10 |
686 | 2791 | 3.179443 | AGGAGTACGTACATTGCATGG | 57.821 | 47.619 | 26.55 | 0.00 | 33.60 | 3.66 |
699 | 2804 | 5.131594 | ACGGAGAAAGTTTGTAGGAGTAC | 57.868 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
700 | 2805 | 5.069516 | ACAACGGAGAAAGTTTGTAGGAGTA | 59.930 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
701 | 2806 | 4.141779 | ACAACGGAGAAAGTTTGTAGGAGT | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
702 | 2807 | 4.377897 | ACAACGGAGAAAGTTTGTAGGAG | 58.622 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
703 | 2808 | 4.411256 | ACAACGGAGAAAGTTTGTAGGA | 57.589 | 40.909 | 0.00 | 0.00 | 0.00 | 2.94 |
704 | 2809 | 5.296035 | AGAAACAACGGAGAAAGTTTGTAGG | 59.704 | 40.000 | 0.00 | 0.00 | 34.62 | 3.18 |
705 | 2810 | 6.359480 | AGAAACAACGGAGAAAGTTTGTAG | 57.641 | 37.500 | 0.00 | 0.00 | 34.62 | 2.74 |
832 | 2941 | 4.090761 | TCCTTGATAATGGACATGAGGC | 57.909 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
888 | 2997 | 3.009473 | ACAGTAGGATTGCATCTGTGGTT | 59.991 | 43.478 | 0.00 | 0.00 | 37.85 | 3.67 |
971 | 3081 | 4.499183 | GATGAGTAGTGGAAGACAACAGG | 58.501 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
987 | 3097 | 1.274703 | AAGCCATGACCGGGATGAGT | 61.275 | 55.000 | 15.47 | 1.74 | 0.00 | 3.41 |
988 | 3098 | 0.816825 | CAAGCCATGACCGGGATGAG | 60.817 | 60.000 | 15.47 | 8.07 | 0.00 | 2.90 |
989 | 3099 | 1.224315 | CAAGCCATGACCGGGATGA | 59.776 | 57.895 | 15.47 | 0.00 | 0.00 | 2.92 |
1133 | 3243 | 2.583319 | CCATCATCGCGCTGTCGT | 60.583 | 61.111 | 10.07 | 0.00 | 38.14 | 4.34 |
1261 | 3371 | 2.182030 | CTTGGAGGAGGCGACGAC | 59.818 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
1281 | 3391 | 1.811266 | CACCATCAGCTCGAACCCG | 60.811 | 63.158 | 0.00 | 0.00 | 37.07 | 5.28 |
1549 | 3670 | 1.333702 | CGTGCAACACTTACGCAATGT | 60.334 | 47.619 | 0.00 | 0.00 | 37.41 | 2.71 |
1588 | 3709 | 2.057137 | ACACAAGGTGCAACACTCAT | 57.943 | 45.000 | 3.64 | 0.00 | 39.98 | 2.90 |
1615 | 3736 | 0.179225 | CACAAACATCCACGTAGCGC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 5.92 |
1645 | 3769 | 7.584987 | AGAATGACAAGATAAAAGAAACACGG | 58.415 | 34.615 | 0.00 | 0.00 | 0.00 | 4.94 |
1646 | 3770 | 9.450807 | AAAGAATGACAAGATAAAAGAAACACG | 57.549 | 29.630 | 0.00 | 0.00 | 0.00 | 4.49 |
1655 | 3779 | 9.528018 | GACCAACAAAAAGAATGACAAGATAAA | 57.472 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
1681 | 3835 | 5.175856 | GCTCATAATCCGTTGCACTTAGTAG | 59.824 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1682 | 3836 | 5.047847 | GCTCATAATCCGTTGCACTTAGTA | 58.952 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
1683 | 3837 | 3.871594 | GCTCATAATCCGTTGCACTTAGT | 59.128 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
1901 | 4062 | 1.946650 | GCGGATGTCACTCTAGCGC | 60.947 | 63.158 | 0.00 | 0.00 | 0.00 | 5.92 |
1902 | 4063 | 0.031314 | ATGCGGATGTCACTCTAGCG | 59.969 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1938 | 4099 | 4.796231 | GAGACATCGGCGCCACGT | 62.796 | 66.667 | 28.98 | 19.81 | 34.94 | 4.49 |
1942 | 4103 | 2.336809 | CTAGGAGACATCGGCGCC | 59.663 | 66.667 | 19.07 | 19.07 | 0.00 | 6.53 |
1995 | 4171 | 4.382320 | CCGAGGAAAACCGGCCGA | 62.382 | 66.667 | 30.73 | 0.00 | 39.22 | 5.54 |
2068 | 4257 | 4.722700 | CACAGGAAGGTGGGCCCG | 62.723 | 72.222 | 19.37 | 1.73 | 38.74 | 6.13 |
2101 | 4290 | 4.473643 | GCAATATGGCGCCCACTA | 57.526 | 55.556 | 26.77 | 13.54 | 35.80 | 2.74 |
2122 | 4331 | 2.509336 | CTGTCACGGGCGGCTTAG | 60.509 | 66.667 | 9.56 | 3.37 | 0.00 | 2.18 |
2127 | 4336 | 4.742201 | CTCACCTGTCACGGGCGG | 62.742 | 72.222 | 1.07 | 0.00 | 32.02 | 6.13 |
2190 | 4403 | 3.122250 | GAGTCGGGCGTATGCGAGT | 62.122 | 63.158 | 7.60 | 0.00 | 44.10 | 4.18 |
2231 | 4461 | 4.148696 | CGCTTTTGCTTTATTGTGTTGGAG | 59.851 | 41.667 | 0.00 | 0.00 | 44.80 | 3.86 |
2232 | 4462 | 4.047822 | CGCTTTTGCTTTATTGTGTTGGA | 58.952 | 39.130 | 0.00 | 0.00 | 44.80 | 3.53 |
2233 | 4463 | 3.184178 | CCGCTTTTGCTTTATTGTGTTGG | 59.816 | 43.478 | 0.00 | 0.00 | 44.80 | 3.77 |
2234 | 4464 | 3.184178 | CCCGCTTTTGCTTTATTGTGTTG | 59.816 | 43.478 | 0.00 | 0.00 | 44.80 | 3.33 |
2235 | 4465 | 3.068873 | TCCCGCTTTTGCTTTATTGTGTT | 59.931 | 39.130 | 0.00 | 0.00 | 44.80 | 3.32 |
2236 | 4466 | 2.625790 | TCCCGCTTTTGCTTTATTGTGT | 59.374 | 40.909 | 0.00 | 0.00 | 44.80 | 3.72 |
2237 | 4467 | 2.986479 | GTCCCGCTTTTGCTTTATTGTG | 59.014 | 45.455 | 0.00 | 0.00 | 44.80 | 3.33 |
2238 | 4468 | 2.625790 | TGTCCCGCTTTTGCTTTATTGT | 59.374 | 40.909 | 0.00 | 0.00 | 44.80 | 2.71 |
2239 | 4469 | 3.296322 | TGTCCCGCTTTTGCTTTATTG | 57.704 | 42.857 | 0.00 | 0.00 | 44.80 | 1.90 |
2240 | 4470 | 5.852282 | ATATGTCCCGCTTTTGCTTTATT | 57.148 | 34.783 | 0.00 | 0.00 | 44.80 | 1.40 |
2241 | 4471 | 6.017109 | CACTATATGTCCCGCTTTTGCTTTAT | 60.017 | 38.462 | 0.00 | 0.00 | 44.80 | 1.40 |
2242 | 4472 | 5.295787 | CACTATATGTCCCGCTTTTGCTTTA | 59.704 | 40.000 | 0.00 | 0.00 | 44.80 | 1.85 |
2243 | 4473 | 4.096382 | CACTATATGTCCCGCTTTTGCTTT | 59.904 | 41.667 | 0.00 | 0.00 | 44.80 | 3.51 |
2244 | 4474 | 3.627577 | CACTATATGTCCCGCTTTTGCTT | 59.372 | 43.478 | 0.00 | 0.00 | 44.80 | 3.91 |
2245 | 4475 | 3.206150 | CACTATATGTCCCGCTTTTGCT | 58.794 | 45.455 | 0.00 | 0.00 | 44.80 | 3.91 |
2246 | 4476 | 2.943033 | ACACTATATGTCCCGCTTTTGC | 59.057 | 45.455 | 0.00 | 0.00 | 36.54 | 3.68 |
2247 | 4477 | 5.560966 | AAACACTATATGTCCCGCTTTTG | 57.439 | 39.130 | 0.00 | 0.00 | 42.31 | 2.44 |
2248 | 4478 | 6.882678 | AGTAAAACACTATATGTCCCGCTTTT | 59.117 | 34.615 | 0.00 | 0.00 | 42.31 | 2.27 |
2249 | 4479 | 6.412214 | AGTAAAACACTATATGTCCCGCTTT | 58.588 | 36.000 | 0.00 | 0.00 | 42.31 | 3.51 |
2250 | 4480 | 5.985911 | AGTAAAACACTATATGTCCCGCTT | 58.014 | 37.500 | 0.00 | 0.00 | 42.31 | 4.68 |
2251 | 4481 | 5.452917 | GGAGTAAAACACTATATGTCCCGCT | 60.453 | 44.000 | 0.00 | 0.00 | 42.31 | 5.52 |
2252 | 4482 | 4.748600 | GGAGTAAAACACTATATGTCCCGC | 59.251 | 45.833 | 0.00 | 0.00 | 42.31 | 6.13 |
2253 | 4483 | 5.070047 | AGGGAGTAAAACACTATATGTCCCG | 59.930 | 44.000 | 0.00 | 0.00 | 42.31 | 5.14 |
2254 | 4484 | 6.099269 | TGAGGGAGTAAAACACTATATGTCCC | 59.901 | 42.308 | 0.00 | 0.00 | 42.31 | 4.46 |
2255 | 4485 | 7.120923 | TGAGGGAGTAAAACACTATATGTCC | 57.879 | 40.000 | 0.00 | 0.00 | 42.31 | 4.02 |
2256 | 4486 | 9.614792 | AATTGAGGGAGTAAAACACTATATGTC | 57.385 | 33.333 | 0.00 | 0.00 | 42.31 | 3.06 |
2257 | 4487 | 9.975218 | AAATTGAGGGAGTAAAACACTATATGT | 57.025 | 29.630 | 0.00 | 0.00 | 46.42 | 2.29 |
2261 | 4491 | 9.588096 | AAAGAAATTGAGGGAGTAAAACACTAT | 57.412 | 29.630 | 0.00 | 0.00 | 37.72 | 2.12 |
2262 | 4492 | 8.990163 | AAAGAAATTGAGGGAGTAAAACACTA | 57.010 | 30.769 | 0.00 | 0.00 | 37.72 | 2.74 |
2263 | 4493 | 7.898014 | AAAGAAATTGAGGGAGTAAAACACT | 57.102 | 32.000 | 0.00 | 0.00 | 41.47 | 3.55 |
2264 | 4494 | 8.194769 | TGAAAAGAAATTGAGGGAGTAAAACAC | 58.805 | 33.333 | 0.00 | 0.00 | 0.00 | 3.32 |
2265 | 4495 | 8.299990 | TGAAAAGAAATTGAGGGAGTAAAACA | 57.700 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
2266 | 4496 | 8.414003 | ACTGAAAAGAAATTGAGGGAGTAAAAC | 58.586 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
2267 | 4497 | 8.533569 | ACTGAAAAGAAATTGAGGGAGTAAAA | 57.466 | 30.769 | 0.00 | 0.00 | 0.00 | 1.52 |
2268 | 4498 | 8.533569 | AACTGAAAAGAAATTGAGGGAGTAAA | 57.466 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
2269 | 4499 | 8.413229 | CAAACTGAAAAGAAATTGAGGGAGTAA | 58.587 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2270 | 4500 | 7.470009 | GCAAACTGAAAAGAAATTGAGGGAGTA | 60.470 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2271 | 4501 | 6.683861 | GCAAACTGAAAAGAAATTGAGGGAGT | 60.684 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
2272 | 4502 | 5.693555 | GCAAACTGAAAAGAAATTGAGGGAG | 59.306 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2273 | 4503 | 5.128499 | TGCAAACTGAAAAGAAATTGAGGGA | 59.872 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2274 | 4504 | 5.358922 | TGCAAACTGAAAAGAAATTGAGGG | 58.641 | 37.500 | 0.00 | 0.00 | 0.00 | 4.30 |
2275 | 4505 | 8.767478 | ATATGCAAACTGAAAAGAAATTGAGG | 57.233 | 30.769 | 0.00 | 0.00 | 0.00 | 3.86 |
2283 | 4513 | 9.859427 | CCAAATCTTATATGCAAACTGAAAAGA | 57.141 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
2284 | 4514 | 9.643693 | ACCAAATCTTATATGCAAACTGAAAAG | 57.356 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
2285 | 4515 | 9.638239 | GACCAAATCTTATATGCAAACTGAAAA | 57.362 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
2286 | 4516 | 8.801299 | TGACCAAATCTTATATGCAAACTGAAA | 58.199 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
2287 | 4517 | 8.347004 | TGACCAAATCTTATATGCAAACTGAA | 57.653 | 30.769 | 0.00 | 0.00 | 0.00 | 3.02 |
2288 | 4518 | 7.936496 | TGACCAAATCTTATATGCAAACTGA | 57.064 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2289 | 4519 | 8.984891 | TTTGACCAAATCTTATATGCAAACTG | 57.015 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
2290 | 4520 | 9.643693 | CTTTTGACCAAATCTTATATGCAAACT | 57.356 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
2291 | 4521 | 9.423061 | ACTTTTGACCAAATCTTATATGCAAAC | 57.577 | 29.630 | 0.00 | 0.00 | 0.00 | 2.93 |
2292 | 4522 | 9.638239 | GACTTTTGACCAAATCTTATATGCAAA | 57.362 | 29.630 | 0.00 | 0.00 | 0.00 | 3.68 |
2293 | 4523 | 8.801299 | TGACTTTTGACCAAATCTTATATGCAA | 58.199 | 29.630 | 0.00 | 0.00 | 0.00 | 4.08 |
2294 | 4524 | 8.347004 | TGACTTTTGACCAAATCTTATATGCA | 57.653 | 30.769 | 0.00 | 0.00 | 0.00 | 3.96 |
2295 | 4525 | 9.638239 | TTTGACTTTTGACCAAATCTTATATGC | 57.362 | 29.630 | 0.00 | 0.00 | 0.00 | 3.14 |
2300 | 4530 | 9.364989 | CAAAGTTTGACTTTTGACCAAATCTTA | 57.635 | 29.630 | 10.19 | 0.00 | 45.38 | 2.10 |
2301 | 4531 | 7.877612 | ACAAAGTTTGACTTTTGACCAAATCTT | 59.122 | 29.630 | 22.23 | 0.00 | 45.38 | 2.40 |
2302 | 4532 | 7.386059 | ACAAAGTTTGACTTTTGACCAAATCT | 58.614 | 30.769 | 22.23 | 0.00 | 45.38 | 2.40 |
2303 | 4533 | 7.595311 | ACAAAGTTTGACTTTTGACCAAATC | 57.405 | 32.000 | 22.23 | 0.00 | 45.38 | 2.17 |
2304 | 4534 | 9.495572 | TTTACAAAGTTTGACTTTTGACCAAAT | 57.504 | 25.926 | 22.23 | 0.00 | 45.38 | 2.32 |
2305 | 4535 | 8.888579 | TTTACAAAGTTTGACTTTTGACCAAA | 57.111 | 26.923 | 22.23 | 3.97 | 45.38 | 3.28 |
2306 | 4536 | 8.145122 | ACTTTACAAAGTTTGACTTTTGACCAA | 58.855 | 29.630 | 22.23 | 0.00 | 45.38 | 3.67 |
2307 | 4537 | 7.662897 | ACTTTACAAAGTTTGACTTTTGACCA | 58.337 | 30.769 | 22.23 | 0.00 | 45.38 | 4.02 |
2322 | 4552 | 9.651718 | CTACAAAGCTAGTCAAACTTTACAAAG | 57.348 | 33.333 | 0.13 | 0.13 | 41.73 | 2.77 |
2323 | 4553 | 8.617809 | CCTACAAAGCTAGTCAAACTTTACAAA | 58.382 | 33.333 | 0.00 | 0.00 | 32.54 | 2.83 |
2324 | 4554 | 7.988599 | TCCTACAAAGCTAGTCAAACTTTACAA | 59.011 | 33.333 | 0.00 | 0.00 | 32.54 | 2.41 |
2325 | 4555 | 7.502696 | TCCTACAAAGCTAGTCAAACTTTACA | 58.497 | 34.615 | 0.00 | 0.00 | 32.54 | 2.41 |
2326 | 4556 | 7.958053 | TCCTACAAAGCTAGTCAAACTTTAC | 57.042 | 36.000 | 0.00 | 0.00 | 32.54 | 2.01 |
2327 | 4557 | 8.967664 | TTTCCTACAAAGCTAGTCAAACTTTA | 57.032 | 30.769 | 0.00 | 0.00 | 32.54 | 1.85 |
2328 | 4558 | 7.875327 | TTTCCTACAAAGCTAGTCAAACTTT | 57.125 | 32.000 | 0.00 | 0.00 | 34.03 | 2.66 |
2329 | 4559 | 7.773690 | TCTTTTCCTACAAAGCTAGTCAAACTT | 59.226 | 33.333 | 0.00 | 0.00 | 34.26 | 2.66 |
2330 | 4560 | 7.280356 | TCTTTTCCTACAAAGCTAGTCAAACT | 58.720 | 34.615 | 0.00 | 0.00 | 34.26 | 2.66 |
2331 | 4561 | 7.492352 | TCTTTTCCTACAAAGCTAGTCAAAC | 57.508 | 36.000 | 0.00 | 0.00 | 34.26 | 2.93 |
2332 | 4562 | 9.959721 | ATATCTTTTCCTACAAAGCTAGTCAAA | 57.040 | 29.630 | 0.00 | 0.00 | 34.26 | 2.69 |
2333 | 4563 | 9.601217 | GATATCTTTTCCTACAAAGCTAGTCAA | 57.399 | 33.333 | 0.00 | 0.00 | 34.26 | 3.18 |
2334 | 4564 | 8.758829 | TGATATCTTTTCCTACAAAGCTAGTCA | 58.241 | 33.333 | 3.98 | 0.00 | 34.26 | 3.41 |
2335 | 4565 | 9.601217 | TTGATATCTTTTCCTACAAAGCTAGTC | 57.399 | 33.333 | 3.98 | 0.00 | 34.26 | 2.59 |
2448 | 4678 | 1.342474 | TGAAGTCTGCCCCCACAAAAA | 60.342 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
2449 | 4679 | 0.260230 | TGAAGTCTGCCCCCACAAAA | 59.740 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
2450 | 4680 | 0.467290 | GTGAAGTCTGCCCCCACAAA | 60.467 | 55.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2451 | 4681 | 1.150536 | GTGAAGTCTGCCCCCACAA | 59.849 | 57.895 | 0.00 | 0.00 | 0.00 | 3.33 |
2452 | 4682 | 2.829384 | GGTGAAGTCTGCCCCCACA | 61.829 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
2453 | 4683 | 2.034221 | GGTGAAGTCTGCCCCCAC | 59.966 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
2454 | 4684 | 1.774217 | AAGGTGAAGTCTGCCCCCA | 60.774 | 57.895 | 0.00 | 0.00 | 0.00 | 4.96 |
2455 | 4685 | 1.002011 | GAAGGTGAAGTCTGCCCCC | 60.002 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
2456 | 4686 | 0.329596 | ATGAAGGTGAAGTCTGCCCC | 59.670 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
2457 | 4687 | 3.567478 | ATATGAAGGTGAAGTCTGCCC | 57.433 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
2458 | 4688 | 4.508124 | CGTTATATGAAGGTGAAGTCTGCC | 59.492 | 45.833 | 0.00 | 0.00 | 0.00 | 4.85 |
2459 | 4689 | 5.109903 | ACGTTATATGAAGGTGAAGTCTGC | 58.890 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
2460 | 4690 | 7.222224 | GGTTACGTTATATGAAGGTGAAGTCTG | 59.778 | 40.741 | 0.00 | 0.00 | 0.00 | 3.51 |
2461 | 4691 | 7.263496 | GGTTACGTTATATGAAGGTGAAGTCT | 58.737 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
2462 | 4692 | 6.197842 | CGGTTACGTTATATGAAGGTGAAGTC | 59.802 | 42.308 | 0.00 | 0.00 | 34.81 | 3.01 |
2463 | 4693 | 6.038356 | CGGTTACGTTATATGAAGGTGAAGT | 58.962 | 40.000 | 0.00 | 0.00 | 34.81 | 3.01 |
2464 | 4694 | 6.506464 | CGGTTACGTTATATGAAGGTGAAG | 57.494 | 41.667 | 0.00 | 0.00 | 34.81 | 3.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.