Multiple sequence alignment - TraesCS5A01G175500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G175500 chr5A 100.000 5137 0 0 1 5137 368879913 368874777 0.000000e+00 9487.0
1 TraesCS5A01G175500 chr5A 87.335 1137 111 21 889 2013 67210315 67211430 0.000000e+00 1271.0
2 TraesCS5A01G175500 chr5A 86.702 1143 116 19 889 2019 340225479 340224361 0.000000e+00 1236.0
3 TraesCS5A01G175500 chr5A 90.316 919 64 8 3291 4205 88481324 88482221 0.000000e+00 1181.0
4 TraesCS5A01G175500 chr5A 91.052 827 71 3 2014 2840 58440263 58441086 0.000000e+00 1114.0
5 TraesCS5A01G175500 chr5A 87.767 842 78 13 4211 5052 349425831 349425015 0.000000e+00 961.0
6 TraesCS5A01G175500 chr5A 90.000 620 52 4 1 618 67209711 67210322 0.000000e+00 793.0
7 TraesCS5A01G175500 chr5A 91.154 520 39 5 2807 3324 132179138 132178624 0.000000e+00 699.0
8 TraesCS5A01G175500 chr5A 87.223 587 60 12 2771 3352 622168875 622168299 0.000000e+00 654.0
9 TraesCS5A01G175500 chr5A 91.466 457 35 4 3752 4205 154602522 154602977 4.370000e-175 625.0
10 TraesCS5A01G175500 chr5A 98.929 280 3 0 617 896 556676571 556676850 7.680000e-138 501.0
11 TraesCS5A01G175500 chr5A 81.333 75 12 2 901 973 649987542 649987616 5.550000e-05 60.2
12 TraesCS5A01G175500 chr4A 89.488 1446 123 17 2771 4205 252295471 252296898 0.000000e+00 1801.0
13 TraesCS5A01G175500 chr4A 86.872 1135 117 20 889 2013 686229925 686231037 0.000000e+00 1242.0
14 TraesCS5A01G175500 chr4A 89.116 928 84 11 3286 4205 239101488 239100570 0.000000e+00 1138.0
15 TraesCS5A01G175500 chr4A 90.276 689 63 3 2771 3459 132939671 132938987 0.000000e+00 898.0
16 TraesCS5A01G175500 chr4A 90.177 621 54 4 1 619 686229315 686229930 0.000000e+00 802.0
17 TraesCS5A01G175500 chr4A 91.667 456 35 3 3752 4205 124809255 124808801 3.380000e-176 628.0
18 TraesCS5A01G175500 chr4A 86.348 293 39 1 3 295 523714556 523714847 8.300000e-83 318.0
19 TraesCS5A01G175500 chr4A 80.000 100 12 3 2443 2542 701112916 701113007 3.320000e-07 67.6
20 TraesCS5A01G175500 chr4A 79.787 94 11 3 2449 2542 581719090 581719005 1.540000e-05 62.1
21 TraesCS5A01G175500 chr6A 90.455 1320 106 13 2771 4083 510213941 510212635 0.000000e+00 1722.0
22 TraesCS5A01G175500 chr6A 89.242 1320 121 14 2771 4083 76838619 76837314 0.000000e+00 1631.0
23 TraesCS5A01G175500 chr6A 88.337 463 30 16 3754 4205 18012818 18012369 7.570000e-148 534.0
24 TraesCS5A01G175500 chr6A 90.541 370 34 1 3413 3782 430746030 430746398 5.980000e-134 488.0
25 TraesCS5A01G175500 chr6A 91.908 346 24 3 3864 4205 442837147 442836802 1.000000e-131 481.0
26 TraesCS5A01G175500 chr2A 89.598 1317 116 16 2771 4080 377416179 377417481 0.000000e+00 1653.0
27 TraesCS5A01G175500 chr2A 94.541 861 46 1 4193 5053 209176254 209177113 0.000000e+00 1328.0
28 TraesCS5A01G175500 chr2A 90.508 453 40 3 3756 4205 6619458 6619006 3.420000e-166 595.0
29 TraesCS5A01G175500 chr2A 98.944 284 2 1 614 896 768472021 768472304 1.650000e-139 507.0
30 TraesCS5A01G175500 chr2A 81.395 387 54 15 4666 5052 288967619 288967251 3.010000e-77 300.0
31 TraesCS5A01G175500 chr7A 88.729 1180 116 10 2906 4078 264200103 264201272 0.000000e+00 1426.0
32 TraesCS5A01G175500 chr7A 88.140 860 87 12 4193 5052 398189826 398190670 0.000000e+00 1009.0
33 TraesCS5A01G175500 chr7A 86.760 861 89 19 4193 5052 66073009 66073845 0.000000e+00 935.0
34 TraesCS5A01G175500 chr7A 86.605 866 85 22 4192 5052 549669837 549670676 0.000000e+00 928.0
35 TraesCS5A01G175500 chr7A 89.009 464 28 16 3752 4205 270392799 270393249 2.090000e-153 553.0
36 TraesCS5A01G175500 chr7A 98.936 282 3 0 618 899 529331796 529331515 5.940000e-139 505.0
37 TraesCS5A01G175500 chr7A 97.931 290 5 1 614 902 59434149 59433860 7.680000e-138 501.0
38 TraesCS5A01G175500 chr7A 95.114 307 12 3 622 927 603948704 603948400 1.000000e-131 481.0
39 TraesCS5A01G175500 chr7A 87.795 254 30 1 1 253 541961937 541962190 3.890000e-76 296.0
40 TraesCS5A01G175500 chr7A 79.787 94 11 3 2449 2542 345921909 345921824 1.540000e-05 62.1
41 TraesCS5A01G175500 chr2D 87.153 973 95 19 4081 5052 503883247 503884190 0.000000e+00 1077.0
42 TraesCS5A01G175500 chr2D 86.639 973 97 18 4081 5052 238995 239935 0.000000e+00 1046.0
43 TraesCS5A01G175500 chr3A 89.302 860 68 15 4193 5052 609213840 609213005 0.000000e+00 1057.0
44 TraesCS5A01G175500 chr3A 86.354 469 43 12 3752 4205 520673104 520672642 4.620000e-135 492.0
45 TraesCS5A01G175500 chr3D 88.297 863 80 18 4193 5052 342335960 342335116 0.000000e+00 1014.0
46 TraesCS5A01G175500 chr3D 85.083 181 27 0 1476 1656 489894026 489893846 8.780000e-43 185.0
47 TraesCS5A01G175500 chr5B 86.395 860 97 17 4195 5052 128919882 128919041 0.000000e+00 922.0
48 TraesCS5A01G175500 chr5B 99.639 277 1 0 620 896 423645003 423644727 1.650000e-139 507.0
49 TraesCS5A01G175500 chr1A 87.245 588 57 13 2771 3352 488677926 488678501 0.000000e+00 654.0
50 TraesCS5A01G175500 chr1A 85.246 305 42 2 1 305 462511211 462510910 1.390000e-80 311.0
51 TraesCS5A01G175500 chr6D 85.665 579 59 14 4474 5052 327906410 327905856 5.730000e-164 588.0
52 TraesCS5A01G175500 chr6D 85.172 580 61 15 4474 5052 120560804 120560249 5.770000e-159 571.0
53 TraesCS5A01G175500 chr6D 85.198 581 58 15 4474 5052 348704584 348705138 5.770000e-159 571.0
54 TraesCS5A01G175500 chr6D 90.642 374 34 1 3409 3782 272340290 272339918 3.570000e-136 496.0
55 TraesCS5A01G175500 chr6D 88.136 295 34 1 1 295 460655261 460655554 2.940000e-92 350.0
56 TraesCS5A01G175500 chr6D 87.162 296 35 3 1 295 234291331 234291038 2.960000e-87 333.0
57 TraesCS5A01G175500 chr6D 97.727 88 2 0 5050 5137 25150365 25150452 8.910000e-33 152.0
58 TraesCS5A01G175500 chr6D 97.727 88 2 0 5050 5137 114748496 114748409 8.910000e-33 152.0
59 TraesCS5A01G175500 chr6D 97.727 88 2 0 5050 5137 133787643 133787556 8.910000e-33 152.0
60 TraesCS5A01G175500 chr6D 97.727 88 2 0 5050 5137 143162084 143162171 8.910000e-33 152.0
61 TraesCS5A01G175500 chr6D 97.727 88 2 0 5050 5137 163249435 163249348 8.910000e-33 152.0
62 TraesCS5A01G175500 chr6D 97.727 88 2 0 5050 5137 201854960 201855047 8.910000e-33 152.0
63 TraesCS5A01G175500 chr7B 82.284 683 95 17 3752 4418 128414510 128415182 7.460000e-158 568.0
64 TraesCS5A01G175500 chr7B 98.592 284 4 0 618 901 503365593 503365310 2.130000e-138 503.0
65 TraesCS5A01G175500 chr7B 82.735 446 54 9 2014 2441 127607748 127607308 4.860000e-100 375.0
66 TraesCS5A01G175500 chr7B 80.844 308 38 11 3752 4038 742692121 742692428 6.690000e-54 222.0
67 TraesCS5A01G175500 chr7B 80.851 94 10 3 2449 2542 674631219 674631134 3.320000e-07 67.6
68 TraesCS5A01G175500 chr1D 88.025 476 42 7 2014 2474 46223614 46224089 2.700000e-152 549.0
69 TraesCS5A01G175500 chr1D 91.781 292 24 0 2466 2757 46226312 46226603 1.720000e-109 407.0
70 TraesCS5A01G175500 chr1D 88.514 296 32 2 1 295 326327132 326327426 1.760000e-94 357.0
71 TraesCS5A01G175500 chr1D 81.250 336 49 9 3757 4078 13161962 13161627 5.100000e-65 259.0
72 TraesCS5A01G175500 chrUn 84.602 578 58 19 4476 5052 101595973 101595426 3.500000e-151 545.0
73 TraesCS5A01G175500 chrUn 83.993 581 67 16 4473 5052 20235778 20235223 7.570000e-148 534.0
74 TraesCS5A01G175500 chrUn 83.877 583 61 17 4474 5052 11547863 11548416 4.560000e-145 525.0
75 TraesCS5A01G175500 chrUn 80.475 379 42 16 4677 5052 427647836 427648185 1.420000e-65 261.0
76 TraesCS5A01G175500 chrUn 97.727 88 2 0 5050 5137 175460868 175460955 8.910000e-33 152.0
77 TraesCS5A01G175500 chrUn 97.727 88 2 0 5050 5137 307369377 307369464 8.910000e-33 152.0
78 TraesCS5A01G175500 chrUn 97.727 88 2 0 5050 5137 333259169 333259256 8.910000e-33 152.0
79 TraesCS5A01G175500 chrUn 96.591 88 3 0 5050 5137 11548464 11548551 4.140000e-31 147.0
80 TraesCS5A01G175500 chrUn 96.591 88 3 0 5050 5137 20235175 20235088 4.140000e-31 147.0
81 TraesCS5A01G175500 chrUn 96.591 88 3 0 5050 5137 26642931 26643018 4.140000e-31 147.0
82 TraesCS5A01G175500 chrUn 96.591 88 3 0 5050 5137 101595378 101595291 4.140000e-31 147.0
83 TraesCS5A01G175500 chrUn 96.591 88 3 0 5050 5137 106022827 106022914 4.140000e-31 147.0
84 TraesCS5A01G175500 chrUn 96.591 88 3 0 5050 5137 115704331 115704244 4.140000e-31 147.0
85 TraesCS5A01G175500 chr6B 100.000 275 0 0 622 896 41455251 41454977 4.590000e-140 508.0
86 TraesCS5A01G175500 chr6B 99.283 279 2 0 618 896 279088094 279087816 5.940000e-139 505.0
87 TraesCS5A01G175500 chr6B 79.714 350 47 14 3751 4078 594704009 594704356 1.110000e-56 231.0
88 TraesCS5A01G175500 chr7D 87.879 297 33 2 1 295 209555837 209555542 3.810000e-91 346.0
89 TraesCS5A01G175500 chr7D 98.864 88 1 0 5050 5137 170637037 170637124 1.910000e-34 158.0
90 TraesCS5A01G175500 chr2B 81.159 345 42 10 3752 4075 636978004 636978346 6.600000e-64 255.0
91 TraesCS5A01G175500 chr2B 94.000 50 3 0 2587 2636 547113012 547113061 5.520000e-10 76.8
92 TraesCS5A01G175500 chr3B 88.293 205 24 0 3752 3956 303098193 303097989 3.970000e-61 246.0
93 TraesCS5A01G175500 chr5D 89.759 166 14 3 2015 2180 325330557 325330719 5.210000e-50 209.0
94 TraesCS5A01G175500 chr5D 98.864 88 1 0 5050 5137 129900657 129900570 1.910000e-34 158.0
95 TraesCS5A01G175500 chr1B 80.612 98 10 4 2449 2545 620008464 620008375 3.320000e-07 67.6
96 TraesCS5A01G175500 chr4B 79.787 94 11 3 2449 2542 92862082 92861997 1.540000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G175500 chr5A 368874777 368879913 5136 True 9487.0 9487 100.0000 1 5137 1 chr5A.!!$R4 5136
1 TraesCS5A01G175500 chr5A 340224361 340225479 1118 True 1236.0 1236 86.7020 889 2019 1 chr5A.!!$R2 1130
2 TraesCS5A01G175500 chr5A 88481324 88482221 897 False 1181.0 1181 90.3160 3291 4205 1 chr5A.!!$F2 914
3 TraesCS5A01G175500 chr5A 58440263 58441086 823 False 1114.0 1114 91.0520 2014 2840 1 chr5A.!!$F1 826
4 TraesCS5A01G175500 chr5A 67209711 67211430 1719 False 1032.0 1271 88.6675 1 2013 2 chr5A.!!$F6 2012
5 TraesCS5A01G175500 chr5A 349425015 349425831 816 True 961.0 961 87.7670 4211 5052 1 chr5A.!!$R3 841
6 TraesCS5A01G175500 chr5A 132178624 132179138 514 True 699.0 699 91.1540 2807 3324 1 chr5A.!!$R1 517
7 TraesCS5A01G175500 chr5A 622168299 622168875 576 True 654.0 654 87.2230 2771 3352 1 chr5A.!!$R5 581
8 TraesCS5A01G175500 chr4A 252295471 252296898 1427 False 1801.0 1801 89.4880 2771 4205 1 chr4A.!!$F1 1434
9 TraesCS5A01G175500 chr4A 239100570 239101488 918 True 1138.0 1138 89.1160 3286 4205 1 chr4A.!!$R3 919
10 TraesCS5A01G175500 chr4A 686229315 686231037 1722 False 1022.0 1242 88.5245 1 2013 2 chr4A.!!$F4 2012
11 TraesCS5A01G175500 chr4A 132938987 132939671 684 True 898.0 898 90.2760 2771 3459 1 chr4A.!!$R2 688
12 TraesCS5A01G175500 chr6A 510212635 510213941 1306 True 1722.0 1722 90.4550 2771 4083 1 chr6A.!!$R4 1312
13 TraesCS5A01G175500 chr6A 76837314 76838619 1305 True 1631.0 1631 89.2420 2771 4083 1 chr6A.!!$R2 1312
14 TraesCS5A01G175500 chr2A 377416179 377417481 1302 False 1653.0 1653 89.5980 2771 4080 1 chr2A.!!$F2 1309
15 TraesCS5A01G175500 chr2A 209176254 209177113 859 False 1328.0 1328 94.5410 4193 5053 1 chr2A.!!$F1 860
16 TraesCS5A01G175500 chr7A 264200103 264201272 1169 False 1426.0 1426 88.7290 2906 4078 1 chr7A.!!$F2 1172
17 TraesCS5A01G175500 chr7A 398189826 398190670 844 False 1009.0 1009 88.1400 4193 5052 1 chr7A.!!$F4 859
18 TraesCS5A01G175500 chr7A 66073009 66073845 836 False 935.0 935 86.7600 4193 5052 1 chr7A.!!$F1 859
19 TraesCS5A01G175500 chr7A 549669837 549670676 839 False 928.0 928 86.6050 4192 5052 1 chr7A.!!$F6 860
20 TraesCS5A01G175500 chr2D 503883247 503884190 943 False 1077.0 1077 87.1530 4081 5052 1 chr2D.!!$F2 971
21 TraesCS5A01G175500 chr2D 238995 239935 940 False 1046.0 1046 86.6390 4081 5052 1 chr2D.!!$F1 971
22 TraesCS5A01G175500 chr3A 609213005 609213840 835 True 1057.0 1057 89.3020 4193 5052 1 chr3A.!!$R2 859
23 TraesCS5A01G175500 chr3D 342335116 342335960 844 True 1014.0 1014 88.2970 4193 5052 1 chr3D.!!$R1 859
24 TraesCS5A01G175500 chr5B 128919041 128919882 841 True 922.0 922 86.3950 4195 5052 1 chr5B.!!$R1 857
25 TraesCS5A01G175500 chr1A 488677926 488678501 575 False 654.0 654 87.2450 2771 3352 1 chr1A.!!$F1 581
26 TraesCS5A01G175500 chr6D 327905856 327906410 554 True 588.0 588 85.6650 4474 5052 1 chr6D.!!$R7 578
27 TraesCS5A01G175500 chr6D 120560249 120560804 555 True 571.0 571 85.1720 4474 5052 1 chr6D.!!$R2 578
28 TraesCS5A01G175500 chr6D 348704584 348705138 554 False 571.0 571 85.1980 4474 5052 1 chr6D.!!$F4 578
29 TraesCS5A01G175500 chr7B 128414510 128415182 672 False 568.0 568 82.2840 3752 4418 1 chr7B.!!$F1 666
30 TraesCS5A01G175500 chr1D 46223614 46226603 2989 False 478.0 549 89.9030 2014 2757 2 chr1D.!!$F2 743
31 TraesCS5A01G175500 chrUn 101595291 101595973 682 True 346.0 545 90.5965 4476 5137 2 chrUn.!!$R3 661
32 TraesCS5A01G175500 chrUn 20235088 20235778 690 True 340.5 534 90.2920 4473 5137 2 chrUn.!!$R2 664
33 TraesCS5A01G175500 chrUn 11547863 11548551 688 False 336.0 525 90.2340 4474 5137 2 chrUn.!!$F7 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 901 0.043334 ACTCCCACTATGACCAGCCT 59.957 55.0 0.00 0.0 0.00 4.58 F
1183 1189 0.037326 TGGCCTTCAGCTTCAGTACG 60.037 55.0 3.32 0.0 43.05 3.67 F
2379 2412 0.462581 ACAGCATCCGTGGCATGTAG 60.463 55.0 5.89 0.0 0.00 2.74 F
3160 5427 0.176219 CCTATTCAACGTGCCGGGTA 59.824 55.0 2.18 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 2350 0.178975 CGGAGAGGGCAGAGGTAGAT 60.179 60.000 0.00 0.0 0.00 1.98 R
2665 4929 1.068472 CCGTACATAGCGGCCTTAGAG 60.068 57.143 0.00 0.0 42.82 2.43 R
3589 5860 0.034059 CTCAGGCAGACCAACGACTT 59.966 55.000 0.00 0.0 39.06 3.01 R
4958 7291 0.890996 GACCAAGGTCAAGCTGGGTG 60.891 60.000 12.94 0.0 44.02 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.537143 ACAAAGATGCGTTGGCCTCA 60.537 50.000 3.32 0.00 36.40 3.86
28 29 0.813184 CAAAGATGCGTTGGCCTCAT 59.187 50.000 3.32 1.93 36.40 2.90
38 39 2.093973 CGTTGGCCTCATGACTAAGTCT 60.094 50.000 3.32 0.00 33.15 3.24
45 46 4.322349 GCCTCATGACTAAGTCTTGACACT 60.322 45.833 0.00 0.00 40.24 3.55
46 47 5.105716 GCCTCATGACTAAGTCTTGACACTA 60.106 44.000 0.00 0.00 40.24 2.74
54 55 6.926313 ACTAAGTCTTGACACTAAGGACATC 58.074 40.000 3.49 0.00 0.00 3.06
68 69 1.812571 GGACATCTGCCGTGACAATTT 59.187 47.619 0.00 0.00 0.00 1.82
76 77 2.620585 TGCCGTGACAATTTCATGACAA 59.379 40.909 0.00 0.00 43.20 3.18
219 220 6.094603 CAGGATTTACTTTTGATCTGGGAGTG 59.905 42.308 0.00 0.00 0.00 3.51
273 274 1.363885 GATGTGCGCTGCTGTGATCA 61.364 55.000 9.73 6.29 0.00 2.92
276 277 0.169672 GTGCGCTGCTGTGATCAAAT 59.830 50.000 9.73 0.00 0.00 2.32
306 307 2.649531 AACCGGATCAACTTTCACCA 57.350 45.000 9.46 0.00 0.00 4.17
314 315 1.606668 TCAACTTTCACCATCGCCAAC 59.393 47.619 0.00 0.00 0.00 3.77
315 316 0.591170 AACTTTCACCATCGCCAACG 59.409 50.000 0.00 0.00 42.01 4.10
316 317 0.534203 ACTTTCACCATCGCCAACGT 60.534 50.000 0.00 0.00 41.18 3.99
330 331 2.159296 GCCAACGTGGACAGAAGTTTTT 60.159 45.455 8.04 0.00 40.96 1.94
331 332 3.434637 CCAACGTGGACAGAAGTTTTTG 58.565 45.455 0.00 0.00 40.96 2.44
336 337 3.002965 CGTGGACAGAAGTTTTTGGGTAC 59.997 47.826 0.00 0.00 0.00 3.34
341 342 5.878669 GGACAGAAGTTTTTGGGTACGATAT 59.121 40.000 0.00 0.00 0.00 1.63
389 390 7.439655 GCTTCAAGTCGTATCCTCATTCTTATT 59.560 37.037 0.00 0.00 0.00 1.40
440 442 2.842188 ATTGCATTGAGGGCGGCTGA 62.842 55.000 9.56 0.00 0.00 4.26
474 476 5.662211 GCAATCAAGTGTTGAAATTGCTT 57.338 34.783 15.76 0.00 45.39 3.91
509 512 0.326264 AGACCAAAGTAGCAGCCCTG 59.674 55.000 0.00 0.00 0.00 4.45
537 540 1.123928 TTGGCACGGGGTTCAAAAAT 58.876 45.000 0.00 0.00 0.00 1.82
538 541 1.996798 TGGCACGGGGTTCAAAAATA 58.003 45.000 0.00 0.00 0.00 1.40
539 542 2.317040 TGGCACGGGGTTCAAAAATAA 58.683 42.857 0.00 0.00 0.00 1.40
540 543 2.698797 TGGCACGGGGTTCAAAAATAAA 59.301 40.909 0.00 0.00 0.00 1.40
541 544 3.134081 TGGCACGGGGTTCAAAAATAAAA 59.866 39.130 0.00 0.00 0.00 1.52
542 545 4.127907 GGCACGGGGTTCAAAAATAAAAA 58.872 39.130 0.00 0.00 0.00 1.94
595 601 2.168728 GGACTTAATCTCTGCCTCCGTT 59.831 50.000 0.00 0.00 0.00 4.44
629 635 4.767255 CACCGCCTCAGGCTGGTC 62.767 72.222 24.30 3.17 46.52 4.02
634 640 2.216148 GCCTCAGGCTGGTCATAGT 58.784 57.895 15.73 0.00 46.69 2.12
635 641 0.179062 GCCTCAGGCTGGTCATAGTG 60.179 60.000 15.73 0.12 46.69 2.74
636 642 0.467384 CCTCAGGCTGGTCATAGTGG 59.533 60.000 15.73 1.12 0.00 4.00
637 643 0.467384 CTCAGGCTGGTCATAGTGGG 59.533 60.000 15.73 0.00 0.00 4.61
638 644 0.982852 TCAGGCTGGTCATAGTGGGG 60.983 60.000 15.73 0.00 0.00 4.96
639 645 0.982852 CAGGCTGGTCATAGTGGGGA 60.983 60.000 6.61 0.00 0.00 4.81
640 646 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
641 647 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
642 648 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
643 649 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
644 650 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
645 651 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
646 652 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
647 653 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
648 654 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
649 655 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
650 656 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
651 657 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
652 658 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
653 659 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
654 660 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
655 661 6.649041 AGTGGGGAGTAACTTAGACTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
656 662 7.037342 AGTGGGGAGTAACTTAGACTAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
657 663 6.889177 AGTGGGGAGTAACTTAGACTAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
658 664 6.660949 GTGGGGAGTAACTTAGACTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
659 665 7.341512 GTGGGGAGTAACTTAGACTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
660 666 8.560039 TGGGGAGTAACTTAGACTAGTAACATA 58.440 37.037 0.00 0.00 0.00 2.29
661 667 8.845227 GGGGAGTAACTTAGACTAGTAACATAC 58.155 40.741 0.00 0.00 0.00 2.39
662 668 9.401058 GGGAGTAACTTAGACTAGTAACATACA 57.599 37.037 0.00 0.00 0.00 2.29
698 704 9.364653 AGTCTATGTTACTACCTTTATAGTGGG 57.635 37.037 0.00 0.00 36.09 4.61
699 705 9.140874 GTCTATGTTACTACCTTTATAGTGGGT 57.859 37.037 0.00 0.00 36.09 4.51
707 713 7.598759 CTACCTTTATAGTGGGTAGTGTCAT 57.401 40.000 14.51 0.00 44.30 3.06
708 714 8.701908 CTACCTTTATAGTGGGTAGTGTCATA 57.298 38.462 14.51 0.00 44.30 2.15
709 715 7.598759 ACCTTTATAGTGGGTAGTGTCATAG 57.401 40.000 0.00 0.00 0.00 2.23
710 716 6.553852 ACCTTTATAGTGGGTAGTGTCATAGG 59.446 42.308 0.00 0.00 0.00 2.57
711 717 6.553852 CCTTTATAGTGGGTAGTGTCATAGGT 59.446 42.308 0.00 0.00 0.00 3.08
712 718 6.971726 TTATAGTGGGTAGTGTCATAGGTG 57.028 41.667 0.00 0.00 0.00 4.00
713 719 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
714 720 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
715 721 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
716 722 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
717 723 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
718 724 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
719 725 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
738 744 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
739 745 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
740 746 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
748 754 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
749 755 9.556030 GTTGCCTTCATTTATTACTTTGTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
750 756 9.515226 TTGCCTTCATTTATTACTTTGTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
751 757 9.162764 TGCCTTCATTTATTACTTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
752 758 9.162764 GCCTTCATTTATTACTTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
763 769 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
764 770 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
765 771 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
766 772 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
767 773 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
768 774 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
769 775 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
770 776 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
771 777 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
772 778 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
773 779 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
774 780 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
775 781 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
776 782 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
777 783 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
778 784 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
779 785 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
780 786 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
781 787 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
782 788 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
783 789 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
784 790 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
813 819 5.599999 TGTTACTCTATTTGCCTCTCTCC 57.400 43.478 0.00 0.00 0.00 3.71
814 820 5.273208 TGTTACTCTATTTGCCTCTCTCCT 58.727 41.667 0.00 0.00 0.00 3.69
815 821 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
816 822 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
817 823 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
818 824 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
819 825 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
820 826 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
821 827 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
822 828 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
823 829 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
824 830 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
825 831 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
826 832 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
827 833 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
828 834 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
829 835 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
830 836 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
831 837 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
832 838 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
833 839 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
834 840 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
835 841 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
836 842 5.824624 CCTCATTAACTACTTGCCACATCAT 59.175 40.000 0.00 0.00 0.00 2.45
837 843 6.017605 CCTCATTAACTACTTGCCACATCATC 60.018 42.308 0.00 0.00 0.00 2.92
838 844 6.413892 TCATTAACTACTTGCCACATCATCA 58.586 36.000 0.00 0.00 0.00 3.07
839 845 7.056006 TCATTAACTACTTGCCACATCATCAT 58.944 34.615 0.00 0.00 0.00 2.45
840 846 7.557358 TCATTAACTACTTGCCACATCATCATT 59.443 33.333 0.00 0.00 0.00 2.57
841 847 7.701539 TTAACTACTTGCCACATCATCATTT 57.298 32.000 0.00 0.00 0.00 2.32
842 848 6.594788 AACTACTTGCCACATCATCATTTT 57.405 33.333 0.00 0.00 0.00 1.82
843 849 6.594788 ACTACTTGCCACATCATCATTTTT 57.405 33.333 0.00 0.00 0.00 1.94
844 850 6.392354 ACTACTTGCCACATCATCATTTTTG 58.608 36.000 0.00 0.00 0.00 2.44
845 851 3.998341 ACTTGCCACATCATCATTTTTGC 59.002 39.130 0.00 0.00 0.00 3.68
846 852 3.965379 TGCCACATCATCATTTTTGCT 57.035 38.095 0.00 0.00 0.00 3.91
847 853 4.274602 TGCCACATCATCATTTTTGCTT 57.725 36.364 0.00 0.00 0.00 3.91
848 854 5.402997 TGCCACATCATCATTTTTGCTTA 57.597 34.783 0.00 0.00 0.00 3.09
849 855 5.979993 TGCCACATCATCATTTTTGCTTAT 58.020 33.333 0.00 0.00 0.00 1.73
850 856 5.813157 TGCCACATCATCATTTTTGCTTATG 59.187 36.000 0.00 0.00 0.00 1.90
851 857 5.813672 GCCACATCATCATTTTTGCTTATGT 59.186 36.000 0.00 0.00 0.00 2.29
852 858 6.237996 GCCACATCATCATTTTTGCTTATGTG 60.238 38.462 0.00 0.00 41.50 3.21
853 859 7.229228 CACATCATCATTTTTGCTTATGTGG 57.771 36.000 0.00 0.00 39.34 4.17
854 860 5.813672 ACATCATCATTTTTGCTTATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
855 861 5.402997 TCATCATTTTTGCTTATGTGGCA 57.597 34.783 0.00 0.00 37.97 4.92
856 862 5.979993 TCATCATTTTTGCTTATGTGGCAT 58.020 33.333 0.00 0.00 39.54 4.40
857 863 6.044046 TCATCATTTTTGCTTATGTGGCATC 58.956 36.000 0.00 0.00 39.54 3.91
858 864 5.664294 TCATTTTTGCTTATGTGGCATCT 57.336 34.783 0.00 0.00 39.54 2.90
859 865 6.772360 TCATTTTTGCTTATGTGGCATCTA 57.228 33.333 0.00 0.00 39.54 1.98
860 866 7.350744 TCATTTTTGCTTATGTGGCATCTAT 57.649 32.000 0.00 0.00 39.54 1.98
861 867 7.204604 TCATTTTTGCTTATGTGGCATCTATG 58.795 34.615 0.00 0.00 39.54 2.23
862 868 6.528537 TTTTTGCTTATGTGGCATCTATGT 57.471 33.333 0.00 0.00 39.54 2.29
863 869 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
864 870 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
865 871 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
866 872 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
867 873 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
868 874 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
869 875 6.369065 GCTTATGTGGCATCTATGTTACTACC 59.631 42.308 0.00 0.00 0.00 3.18
870 876 7.612065 TTATGTGGCATCTATGTTACTACCT 57.388 36.000 0.00 0.00 0.00 3.08
871 877 8.715190 TTATGTGGCATCTATGTTACTACCTA 57.285 34.615 0.00 0.00 0.00 3.08
872 878 7.798710 ATGTGGCATCTATGTTACTACCTAT 57.201 36.000 0.00 0.00 0.00 2.57
873 879 6.993079 TGTGGCATCTATGTTACTACCTATG 58.007 40.000 0.00 0.00 0.00 2.23
874 880 6.553476 TGTGGCATCTATGTTACTACCTATGT 59.447 38.462 0.00 0.00 0.00 2.29
875 881 7.070696 TGTGGCATCTATGTTACTACCTATGTT 59.929 37.037 0.00 0.00 0.00 2.71
876 882 8.582437 GTGGCATCTATGTTACTACCTATGTTA 58.418 37.037 0.00 0.00 0.00 2.41
877 883 8.582437 TGGCATCTATGTTACTACCTATGTTAC 58.418 37.037 0.00 0.00 0.00 2.50
878 884 8.804204 GGCATCTATGTTACTACCTATGTTACT 58.196 37.037 0.00 0.00 0.00 2.24
879 885 9.843334 GCATCTATGTTACTACCTATGTTACTC 57.157 37.037 0.00 0.00 0.00 2.59
881 887 8.930846 TCTATGTTACTACCTATGTTACTCCC 57.069 38.462 0.00 0.00 0.00 4.30
882 888 8.505246 TCTATGTTACTACCTATGTTACTCCCA 58.495 37.037 0.00 0.00 0.00 4.37
883 889 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
884 890 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
885 891 7.642186 TGTTACTACCTATGTTACTCCCACTA 58.358 38.462 0.00 0.00 0.00 2.74
886 892 8.284435 TGTTACTACCTATGTTACTCCCACTAT 58.716 37.037 0.00 0.00 0.00 2.12
887 893 8.574737 GTTACTACCTATGTTACTCCCACTATG 58.425 40.741 0.00 0.00 0.00 2.23
888 894 6.919158 ACTACCTATGTTACTCCCACTATGA 58.081 40.000 0.00 0.00 0.00 2.15
889 895 6.776603 ACTACCTATGTTACTCCCACTATGAC 59.223 42.308 0.00 0.00 0.00 3.06
890 896 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
891 897 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
892 898 5.011125 CCTATGTTACTCCCACTATGACCAG 59.989 48.000 0.00 0.00 0.00 4.00
893 899 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
894 900 1.789523 TACTCCCACTATGACCAGCC 58.210 55.000 0.00 0.00 0.00 4.85
895 901 0.043334 ACTCCCACTATGACCAGCCT 59.957 55.000 0.00 0.00 0.00 4.58
917 923 2.740055 CGCTTCCGACTGCTGCTT 60.740 61.111 0.00 0.00 36.29 3.91
921 927 3.182590 TTCCGACTGCTGCTTGGCT 62.183 57.895 0.00 0.00 0.00 4.75
923 929 2.667536 CGACTGCTGCTTGGCTGT 60.668 61.111 0.00 8.48 44.71 4.40
1032 1038 1.834856 CTCTCCCTCTGGCTGTTGCA 61.835 60.000 0.00 0.00 41.91 4.08
1096 1102 4.459089 GTGCCCTCTGCTCCGGAC 62.459 72.222 0.00 0.00 42.00 4.79
1098 1104 2.442272 GCCCTCTGCTCCGGACTA 60.442 66.667 0.00 0.00 36.87 2.59
1122 1128 4.838486 GCTGAGTCGCCTCGTCGG 62.838 72.222 0.00 0.00 40.85 4.79
1123 1129 3.432588 CTGAGTCGCCTCGTCGGT 61.433 66.667 0.00 0.00 40.85 4.69
1124 1130 3.384014 CTGAGTCGCCTCGTCGGTC 62.384 68.421 0.00 0.00 40.85 4.79
1130 1136 1.153823 CGCCTCGTCGGTCTGATTT 60.154 57.895 0.00 0.00 34.25 2.17
1146 1152 4.216257 TCTGATTTCTTTACTGCAAGCCAC 59.784 41.667 0.00 0.00 37.60 5.01
1147 1153 3.888323 TGATTTCTTTACTGCAAGCCACA 59.112 39.130 0.00 0.00 37.60 4.17
1148 1154 4.523943 TGATTTCTTTACTGCAAGCCACAT 59.476 37.500 0.00 0.00 37.60 3.21
1149 1155 4.503741 TTTCTTTACTGCAAGCCACATC 57.496 40.909 0.00 0.00 37.60 3.06
1150 1156 2.436417 TCTTTACTGCAAGCCACATCC 58.564 47.619 0.00 0.00 37.60 3.51
1151 1157 2.040278 TCTTTACTGCAAGCCACATCCT 59.960 45.455 0.00 0.00 37.60 3.24
1152 1158 2.113860 TTACTGCAAGCCACATCCTC 57.886 50.000 0.00 0.00 37.60 3.71
1153 1159 1.279496 TACTGCAAGCCACATCCTCT 58.721 50.000 0.00 0.00 37.60 3.69
1154 1160 1.279496 ACTGCAAGCCACATCCTCTA 58.721 50.000 0.00 0.00 37.60 2.43
1155 1161 1.065854 ACTGCAAGCCACATCCTCTAC 60.066 52.381 0.00 0.00 37.60 2.59
1156 1162 0.983467 TGCAAGCCACATCCTCTACA 59.017 50.000 0.00 0.00 0.00 2.74
1157 1163 1.561076 TGCAAGCCACATCCTCTACAT 59.439 47.619 0.00 0.00 0.00 2.29
1158 1164 2.216898 GCAAGCCACATCCTCTACATC 58.783 52.381 0.00 0.00 0.00 3.06
1159 1165 2.843701 CAAGCCACATCCTCTACATCC 58.156 52.381 0.00 0.00 0.00 3.51
1160 1166 2.171237 CAAGCCACATCCTCTACATCCA 59.829 50.000 0.00 0.00 0.00 3.41
1161 1167 2.481441 AGCCACATCCTCTACATCCAA 58.519 47.619 0.00 0.00 0.00 3.53
1162 1168 2.437281 AGCCACATCCTCTACATCCAAG 59.563 50.000 0.00 0.00 0.00 3.61
1163 1169 2.843701 CCACATCCTCTACATCCAAGC 58.156 52.381 0.00 0.00 0.00 4.01
1164 1170 2.437281 CCACATCCTCTACATCCAAGCT 59.563 50.000 0.00 0.00 0.00 3.74
1165 1171 3.464907 CACATCCTCTACATCCAAGCTG 58.535 50.000 0.00 0.00 0.00 4.24
1166 1172 2.437281 ACATCCTCTACATCCAAGCTGG 59.563 50.000 0.00 0.00 39.43 4.85
1167 1173 0.833287 TCCTCTACATCCAAGCTGGC 59.167 55.000 0.00 0.00 37.47 4.85
1168 1174 0.179034 CCTCTACATCCAAGCTGGCC 60.179 60.000 0.00 0.00 37.47 5.36
1169 1175 0.835941 CTCTACATCCAAGCTGGCCT 59.164 55.000 3.32 0.00 37.47 5.19
1182 1188 1.731720 CTGGCCTTCAGCTTCAGTAC 58.268 55.000 3.32 0.00 43.05 2.73
1183 1189 0.037326 TGGCCTTCAGCTTCAGTACG 60.037 55.000 3.32 0.00 43.05 3.67
1184 1190 0.741221 GGCCTTCAGCTTCAGTACGG 60.741 60.000 0.00 0.00 43.05 4.02
1185 1191 1.362406 GCCTTCAGCTTCAGTACGGC 61.362 60.000 0.00 0.00 38.99 5.68
1186 1192 1.078759 CCTTCAGCTTCAGTACGGCG 61.079 60.000 4.80 4.80 0.00 6.46
1187 1193 1.078759 CTTCAGCTTCAGTACGGCGG 61.079 60.000 13.24 0.00 0.00 6.13
1229 1237 2.738521 CTTGCCGACCTCACACCG 60.739 66.667 0.00 0.00 0.00 4.94
1230 1238 3.220999 CTTGCCGACCTCACACCGA 62.221 63.158 0.00 0.00 0.00 4.69
1231 1239 3.220999 TTGCCGACCTCACACCGAG 62.221 63.158 0.00 0.00 41.89 4.63
1232 1240 3.681835 GCCGACCTCACACCGAGT 61.682 66.667 0.00 0.00 40.48 4.18
1233 1241 2.567049 CCGACCTCACACCGAGTC 59.433 66.667 0.00 0.00 40.48 3.36
1235 1243 2.971452 GACCTCACACCGAGTCCC 59.029 66.667 0.00 0.00 40.48 4.46
1277 1286 2.835431 CCTGGCCTCGACTCCGAT 60.835 66.667 3.32 0.00 44.62 4.18
1313 1322 3.141488 CACCTCGCCTAGCCGTCT 61.141 66.667 0.00 0.00 0.00 4.18
1321 1330 2.023461 CTAGCCGTCTGAGTCGCG 59.977 66.667 0.00 0.00 0.00 5.87
1351 1360 4.020617 CGCCCCTGCTTCCAGTCA 62.021 66.667 0.00 0.00 37.38 3.41
1352 1361 2.360475 GCCCCTGCTTCCAGTCAC 60.360 66.667 0.00 0.00 37.38 3.67
1354 1363 2.528818 CCCCTGCTTCCAGTCACCA 61.529 63.158 0.00 0.00 37.38 4.17
1364 1373 0.758734 CCAGTCACCACCTCAAGTCA 59.241 55.000 0.00 0.00 0.00 3.41
1572 1581 4.421479 AGCCACGGTCTTCGCTCG 62.421 66.667 0.00 0.00 43.89 5.03
1577 1586 1.964891 ACGGTCTTCGCTCGAGTCA 60.965 57.895 15.13 0.00 43.89 3.41
1578 1587 1.512310 CGGTCTTCGCTCGAGTCAC 60.512 63.158 15.13 3.79 0.00 3.67
1621 1630 3.231736 ACAGTCGCGGTTCCACCT 61.232 61.111 6.13 0.00 35.66 4.00
1660 1669 4.314440 TTGCCTCGCGCCTCAAGT 62.314 61.111 0.00 0.00 36.24 3.16
1745 1754 1.520192 CCACCGTGGCTGCTGTATA 59.480 57.895 4.16 0.00 0.00 1.47
1805 1814 4.132336 GGGTTTTCCAATCTACGGATACC 58.868 47.826 0.00 0.00 42.91 2.73
1815 1824 7.897030 TCCAATCTACGGATACCCTTAATCATA 59.103 37.037 0.00 0.00 0.00 2.15
1895 1913 1.029681 TGCGATACATGCCGAGTACT 58.970 50.000 0.00 0.00 0.00 2.73
1907 1925 2.619646 GCCGAGTACTAGAGGAGGAAAG 59.380 54.545 13.79 0.00 0.00 2.62
1913 1931 2.448453 ACTAGAGGAGGAAAGGTGTCG 58.552 52.381 0.00 0.00 0.00 4.35
1921 1939 3.056035 GGAGGAAAGGTGTCGATTACTGT 60.056 47.826 0.00 0.00 0.00 3.55
1931 1949 4.935808 GTGTCGATTACTGTTCTCCCAAAT 59.064 41.667 0.00 0.00 0.00 2.32
1959 1977 5.823209 TGATTTTGACATACTGCTGATGG 57.177 39.130 0.00 0.00 0.00 3.51
1989 2007 0.679505 TGGAGTGGACACTACAGTGC 59.320 55.000 13.18 2.79 46.74 4.40
2013 2031 2.096496 GCAGCACAAACGAGCTATCAAT 59.904 45.455 0.00 0.00 39.50 2.57
2014 2032 3.786818 GCAGCACAAACGAGCTATCAATC 60.787 47.826 0.00 0.00 39.50 2.67
2058 2076 0.878961 GTCAAGTTGCCTCCGTCGTT 60.879 55.000 0.00 0.00 0.00 3.85
2061 2079 2.660258 AAGTTGCCTCCGTCGTTGCT 62.660 55.000 0.00 0.00 0.00 3.91
2070 2088 1.568612 CCGTCGTTGCTGCATTGAGT 61.569 55.000 1.84 0.00 0.00 3.41
2080 2098 2.480555 CATTGAGTTGTCGGCCGC 59.519 61.111 23.51 16.75 0.00 6.53
2105 2123 4.070552 AGCAAGACGCCTCGGTCC 62.071 66.667 0.00 0.00 44.04 4.46
2116 2134 1.542187 CCTCGGTCCCGTTTCCTCTT 61.542 60.000 5.52 0.00 40.74 2.85
2217 2250 1.111116 TCCGTTGTCCGTCTCCAACT 61.111 55.000 0.00 0.00 38.99 3.16
2267 2300 1.752436 CGACCTCACCTAGATGCCTCT 60.752 57.143 0.00 0.00 35.39 3.69
2374 2407 2.358615 GTCACAGCATCCGTGGCA 60.359 61.111 0.00 0.00 38.85 4.92
2379 2412 0.462581 ACAGCATCCGTGGCATGTAG 60.463 55.000 5.89 0.00 0.00 2.74
2447 2480 6.596106 TGTTTGCGAGTATATGGTACAAACAT 59.404 34.615 12.77 0.00 46.00 2.71
2502 4766 6.230472 TCAAGTTTTCTGATGCTAGTGCTAA 58.770 36.000 0.00 0.00 40.48 3.09
2564 4828 0.814010 GCATACGGCCAACCTCGATT 60.814 55.000 2.24 0.00 36.11 3.34
2582 4846 6.238211 CCTCGATTTCATATGAACCACTCAAC 60.238 42.308 17.76 0.74 37.67 3.18
2641 4905 4.016444 AGGAGCAGAGAAACAAAAACACA 58.984 39.130 0.00 0.00 0.00 3.72
2661 4925 3.244875 ACATGGACAAGGTTATGTGCTCA 60.245 43.478 0.00 0.00 41.65 4.26
2665 4929 3.375299 GGACAAGGTTATGTGCTCATCAC 59.625 47.826 4.19 4.54 45.82 3.06
2669 4933 5.187772 ACAAGGTTATGTGCTCATCACTCTA 59.812 40.000 4.19 0.00 45.81 2.43
2730 4994 3.448301 CACTGGATGGGTTGCAACATTAT 59.552 43.478 29.55 19.46 0.00 1.28
2737 5001 4.667573 TGGGTTGCAACATTATCAAGGTA 58.332 39.130 29.55 0.47 0.00 3.08
2765 5029 1.030457 ACGGTCCGTCTATCATCCAC 58.970 55.000 12.23 0.00 33.69 4.02
2767 5031 1.269102 CGGTCCGTCTATCATCCACAC 60.269 57.143 2.08 0.00 0.00 3.82
2795 5059 7.233389 TCAGGTGATATCCATCTAAGCTTAC 57.767 40.000 0.86 0.00 33.61 2.34
2797 5061 8.170730 TCAGGTGATATCCATCTAAGCTTACTA 58.829 37.037 0.86 0.00 33.61 1.82
2926 5193 1.219522 CCGCCCGTACAATTCGATCC 61.220 60.000 0.00 0.00 0.00 3.36
2937 5204 3.941483 ACAATTCGATCCACATCAACTCC 59.059 43.478 0.00 0.00 0.00 3.85
2980 5247 2.591715 GCCATCCGTGCGGCTTAT 60.592 61.111 5.64 0.00 45.29 1.73
3012 5279 1.264045 TGACTCATCATCCGCACCCA 61.264 55.000 0.00 0.00 0.00 4.51
3160 5427 0.176219 CCTATTCAACGTGCCGGGTA 59.824 55.000 2.18 0.00 0.00 3.69
3407 5678 3.827898 GAGTCGCCACTCCCGGAG 61.828 72.222 13.31 13.31 43.14 4.63
3426 5697 1.669115 GTCAGCACCATCACGCACT 60.669 57.895 0.00 0.00 0.00 4.40
3447 5718 1.426621 CGTCTGCGTCCGCTTACTA 59.573 57.895 13.31 0.00 42.51 1.82
3469 5740 1.724582 GGAACAGGTGTGCGCAAGTT 61.725 55.000 14.00 12.34 41.68 2.66
3472 5743 2.516930 AGGTGTGCGCAAGTTGCT 60.517 55.556 24.61 1.86 42.25 3.91
3473 5744 1.227823 AGGTGTGCGCAAGTTGCTA 60.228 52.632 24.61 11.49 42.25 3.49
3483 5754 0.884704 CAAGTTGCTACCCGTGCAGT 60.885 55.000 0.00 0.00 41.71 4.40
3560 5831 2.289257 GCCGGGGTTATATTAAGTCGCT 60.289 50.000 2.18 0.00 0.00 4.93
3570 5841 7.094463 GGTTATATTAAGTCGCTAGTCTGCCTA 60.094 40.741 0.00 0.00 0.00 3.93
3589 5860 3.194116 CCTAAGCCGCCGGAACTATATTA 59.806 47.826 7.68 0.00 0.00 0.98
3664 5935 4.929211 GTCCAAACAAATCAGGGCAATTAC 59.071 41.667 0.00 0.00 0.00 1.89
3745 6016 1.269206 GGTGGTCGTCGTTACTCAACA 60.269 52.381 0.00 0.00 34.05 3.33
3825 6118 4.023193 GGTTCAACCGTGATTGATTTCAGT 60.023 41.667 0.00 0.00 38.37 3.41
3826 6119 4.747540 TCAACCGTGATTGATTTCAGTG 57.252 40.909 0.00 0.00 33.62 3.66
3827 6120 4.133820 TCAACCGTGATTGATTTCAGTGT 58.866 39.130 0.00 0.00 33.62 3.55
3828 6121 4.213270 TCAACCGTGATTGATTTCAGTGTC 59.787 41.667 0.00 0.00 33.62 3.67
3829 6122 3.738982 ACCGTGATTGATTTCAGTGTCA 58.261 40.909 0.00 0.00 0.00 3.58
3830 6123 3.498397 ACCGTGATTGATTTCAGTGTCAC 59.502 43.478 0.00 0.00 34.35 3.67
3831 6124 3.120199 CCGTGATTGATTTCAGTGTCACC 60.120 47.826 0.00 0.00 34.26 4.02
3832 6125 3.423515 CGTGATTGATTTCAGTGTCACCG 60.424 47.826 0.00 0.00 34.26 4.94
3833 6126 2.483877 TGATTGATTTCAGTGTCACCGC 59.516 45.455 0.00 0.00 0.00 5.68
3834 6127 1.960417 TTGATTTCAGTGTCACCGCA 58.040 45.000 0.00 0.00 0.00 5.69
3835 6128 1.960417 TGATTTCAGTGTCACCGCAA 58.040 45.000 0.00 0.00 0.00 4.85
3951 6262 3.084786 GGCTTGTAAGTTCTCCAATGCT 58.915 45.455 0.00 0.00 0.00 3.79
3963 6274 2.157640 CCAATGCTGGATGGGGTTAA 57.842 50.000 0.00 0.00 46.92 2.01
4087 6399 0.895530 GACATGACTCGGGAACTCCA 59.104 55.000 0.00 0.00 37.91 3.86
4166 6480 5.523438 TTAAAGGCCGTCAGAAAATTGTT 57.477 34.783 0.00 0.00 0.00 2.83
4226 6540 2.742053 ACATTCGGTTCAAGGACAATCG 59.258 45.455 0.00 0.00 0.00 3.34
4235 6549 1.210478 CAAGGACAATCGGTCTCCCAT 59.790 52.381 0.00 0.00 46.16 4.00
4282 6599 5.749588 CGGTTTAAAGTTCCGGTTCAAAAAT 59.250 36.000 0.00 0.00 40.49 1.82
4354 6671 2.089980 GAGAACTTGCTGCCATGATGT 58.910 47.619 0.00 0.00 0.00 3.06
4735 7055 1.404391 AGAACATAGCTGTCGGTACCG 59.596 52.381 28.66 28.66 41.35 4.02
4796 7118 6.870965 ACATGATCGTATTTGAATCCTAGCTC 59.129 38.462 0.00 0.00 0.00 4.09
4800 7122 6.222038 TCGTATTTGAATCCTAGCTCAACT 57.778 37.500 0.00 0.00 31.41 3.16
4807 7129 4.532126 TGAATCCTAGCTCAACTCCTTTGA 59.468 41.667 0.00 0.00 42.26 2.69
4826 7148 7.118680 TCCTTTGAAACGGTTTACTGATCATAC 59.881 37.037 6.03 0.00 0.00 2.39
4856 7181 7.739498 TCAGAAACCTTACAATTTGGTCTAC 57.261 36.000 0.78 0.00 32.98 2.59
4958 7291 7.121315 AGGTGTTTTATGAGTGGCTTCTATTTC 59.879 37.037 0.00 0.00 0.00 2.17
4963 7297 2.642311 TGAGTGGCTTCTATTTCACCCA 59.358 45.455 0.00 0.00 0.00 4.51
4996 7330 2.094417 GTCAATAAGTTGCCAGCGTCTC 59.906 50.000 0.00 0.00 35.26 3.36
5108 7492 3.244353 CGCCAAGGGATCTTGTGATCTAT 60.244 47.826 6.08 0.00 46.65 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.271108 TGAGGCCAACGCATCTTTGTA 60.271 47.619 5.01 0.00 46.01 2.41
11 12 0.035152 TCATGAGGCCAACGCATCTT 60.035 50.000 5.01 0.00 46.01 2.40
27 28 6.493802 TGTCCTTAGTGTCAAGACTTAGTCAT 59.506 38.462 15.23 0.00 34.60 3.06
28 29 5.831525 TGTCCTTAGTGTCAAGACTTAGTCA 59.168 40.000 15.23 0.00 34.60 3.41
38 39 2.353704 CGGCAGATGTCCTTAGTGTCAA 60.354 50.000 0.00 0.00 0.00 3.18
45 46 1.262417 TGTCACGGCAGATGTCCTTA 58.738 50.000 0.00 0.00 0.00 2.69
46 47 0.396435 TTGTCACGGCAGATGTCCTT 59.604 50.000 0.00 0.00 0.00 3.36
54 55 2.226200 TGTCATGAAATTGTCACGGCAG 59.774 45.455 0.00 0.00 39.72 4.85
68 69 1.303970 TGGGCGCCAATTGTCATGA 60.304 52.632 30.85 0.00 0.00 3.07
118 119 4.444611 TCCCTAAGAAAGATCCCTCCAAA 58.555 43.478 0.00 0.00 0.00 3.28
153 154 5.412594 CGGTTCTTCTTCATCCAGAAAATCA 59.587 40.000 0.00 0.00 35.40 2.57
154 155 5.163713 CCGGTTCTTCTTCATCCAGAAAATC 60.164 44.000 0.00 0.00 35.40 2.17
306 307 0.670546 CTTCTGTCCACGTTGGCGAT 60.671 55.000 0.00 0.00 42.00 4.58
314 315 2.021457 ACCCAAAAACTTCTGTCCACG 58.979 47.619 0.00 0.00 0.00 4.94
315 316 3.002965 CGTACCCAAAAACTTCTGTCCAC 59.997 47.826 0.00 0.00 0.00 4.02
316 317 3.118334 TCGTACCCAAAAACTTCTGTCCA 60.118 43.478 0.00 0.00 0.00 4.02
330 331 7.762615 GCTGCTGTATATTAAATATCGTACCCA 59.237 37.037 0.00 0.00 0.00 4.51
331 332 7.224167 GGCTGCTGTATATTAAATATCGTACCC 59.776 40.741 0.00 0.00 0.00 3.69
336 337 8.256611 ACTTGGCTGCTGTATATTAAATATCG 57.743 34.615 0.00 0.00 0.00 2.92
341 342 4.272504 GCGACTTGGCTGCTGTATATTAAA 59.727 41.667 0.00 0.00 0.00 1.52
351 352 1.227943 TTGAAGCGACTTGGCTGCT 60.228 52.632 0.00 0.00 43.93 4.24
389 390 8.877864 ATTCACACATAGTTTCCTTCCATAAA 57.122 30.769 0.00 0.00 0.00 1.40
440 442 4.574828 ACACTTGATTGCTTTTACTCACGT 59.425 37.500 0.00 0.00 0.00 4.49
460 462 4.143347 CGCCATTACAAGCAATTTCAACAC 60.143 41.667 0.00 0.00 0.00 3.32
474 476 6.207810 ACTTTGGTCTTTTTATCGCCATTACA 59.792 34.615 0.00 0.00 0.00 2.41
509 512 2.438434 CCGTGCCAATCCAGGTCC 60.438 66.667 0.00 0.00 0.00 4.46
540 543 2.162681 CTTCCGTCATGGCTCCTTTTT 58.837 47.619 0.00 0.00 37.80 1.94
541 544 1.073923 ACTTCCGTCATGGCTCCTTTT 59.926 47.619 0.00 0.00 37.80 2.27
542 545 0.693049 ACTTCCGTCATGGCTCCTTT 59.307 50.000 0.00 0.00 37.80 3.11
543 546 0.036010 CACTTCCGTCATGGCTCCTT 60.036 55.000 0.00 0.00 37.80 3.36
552 558 1.596934 GCCTCATCCACTTCCGTCA 59.403 57.895 0.00 0.00 0.00 4.35
619 625 0.982852 CCCCACTATGACCAGCCTGA 60.983 60.000 0.00 0.00 0.00 3.86
620 626 0.982852 TCCCCACTATGACCAGCCTG 60.983 60.000 0.00 0.00 0.00 4.85
621 627 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
622 628 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
623 629 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
624 630 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
625 631 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
626 632 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
627 633 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
628 634 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
629 635 7.061688 ACTAGTCTAAGTTACTCCCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
630 636 7.223472 ACTAGTCTAAGTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
631 637 6.649041 ACTAGTCTAAGTTACTCCCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
632 638 5.533333 ACTAGTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
633 639 6.660949 TGTTACTAGTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
634 640 6.793478 TGTTACTAGTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
635 641 7.894753 ATGTTACTAGTCTAAGTTACTCCCC 57.105 40.000 0.00 0.00 31.82 4.81
636 642 9.401058 TGTATGTTACTAGTCTAAGTTACTCCC 57.599 37.037 0.00 0.00 31.82 4.30
672 678 9.364653 CCCACTATAAAGGTAGTAACATAGACT 57.635 37.037 0.00 0.00 33.29 3.24
673 679 9.140874 ACCCACTATAAAGGTAGTAACATAGAC 57.859 37.037 0.00 0.00 33.29 2.59
684 690 7.727186 CCTATGACACTACCCACTATAAAGGTA 59.273 40.741 0.00 0.00 35.02 3.08
685 691 6.553852 CCTATGACACTACCCACTATAAAGGT 59.446 42.308 0.00 0.00 37.69 3.50
686 692 6.553852 ACCTATGACACTACCCACTATAAAGG 59.446 42.308 0.00 0.00 0.00 3.11
687 693 7.069578 ACACCTATGACACTACCCACTATAAAG 59.930 40.741 0.00 0.00 0.00 1.85
688 694 6.899075 ACACCTATGACACTACCCACTATAAA 59.101 38.462 0.00 0.00 0.00 1.40
689 695 6.322969 CACACCTATGACACTACCCACTATAA 59.677 42.308 0.00 0.00 0.00 0.98
690 696 5.831525 CACACCTATGACACTACCCACTATA 59.168 44.000 0.00 0.00 0.00 1.31
691 697 4.649674 CACACCTATGACACTACCCACTAT 59.350 45.833 0.00 0.00 0.00 2.12
692 698 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
693 699 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
694 700 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
695 701 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
696 702 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
697 703 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
698 704 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
699 705 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
700 706 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
701 707 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
702 708 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
703 709 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
704 710 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
705 711 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
706 712 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
707 713 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
708 714 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
723 729 9.556030 GTCTACAAAGTAATAAATGAAGGCAAC 57.444 33.333 0.00 0.00 0.00 4.17
724 730 9.515226 AGTCTACAAAGTAATAAATGAAGGCAA 57.485 29.630 0.00 0.00 0.00 4.52
725 731 9.162764 GAGTCTACAAAGTAATAAATGAAGGCA 57.837 33.333 0.00 0.00 0.00 4.75
726 732 9.162764 TGAGTCTACAAAGTAATAAATGAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
737 743 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
738 744 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
739 745 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
740 746 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
741 747 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
742 748 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
743 749 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
744 750 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
745 751 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
746 752 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
747 753 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
748 754 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
749 755 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
750 756 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
751 757 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
752 758 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
753 759 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
754 760 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
755 761 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
756 762 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
757 763 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
758 764 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
759 765 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
760 766 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
761 767 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
762 768 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
763 769 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
764 770 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
765 771 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
766 772 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
767 773 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
768 774 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
787 793 8.371699 GGAGAGAGGCAAATAGAGTAACATAAT 58.628 37.037 0.00 0.00 0.00 1.28
788 794 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
789 795 7.069986 AGGAGAGAGGCAAATAGAGTAACATA 58.930 38.462 0.00 0.00 0.00 2.29
790 796 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
791 797 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
792 798 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
793 799 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
794 800 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
795 801 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
796 802 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
797 803 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
798 804 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
799 805 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
800 806 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
801 807 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
802 808 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
803 809 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
804 810 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
805 811 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
806 812 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
807 813 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
808 814 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
809 815 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
810 816 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
811 817 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
812 818 5.185454 TGATGTGGCAAGTAGTTAATGAGG 58.815 41.667 0.00 0.00 0.00 3.86
813 819 6.539826 TGATGATGTGGCAAGTAGTTAATGAG 59.460 38.462 0.00 0.00 0.00 2.90
814 820 6.413892 TGATGATGTGGCAAGTAGTTAATGA 58.586 36.000 0.00 0.00 0.00 2.57
815 821 6.682423 TGATGATGTGGCAAGTAGTTAATG 57.318 37.500 0.00 0.00 0.00 1.90
816 822 7.886629 AATGATGATGTGGCAAGTAGTTAAT 57.113 32.000 0.00 0.00 0.00 1.40
817 823 7.701539 AAATGATGATGTGGCAAGTAGTTAA 57.298 32.000 0.00 0.00 0.00 2.01
818 824 7.701539 AAAATGATGATGTGGCAAGTAGTTA 57.298 32.000 0.00 0.00 0.00 2.24
819 825 6.594788 AAAATGATGATGTGGCAAGTAGTT 57.405 33.333 0.00 0.00 0.00 2.24
820 826 6.392354 CAAAAATGATGATGTGGCAAGTAGT 58.608 36.000 0.00 0.00 0.00 2.73
821 827 5.290158 GCAAAAATGATGATGTGGCAAGTAG 59.710 40.000 0.00 0.00 0.00 2.57
822 828 5.047164 AGCAAAAATGATGATGTGGCAAGTA 60.047 36.000 0.00 0.00 0.00 2.24
823 829 3.998341 GCAAAAATGATGATGTGGCAAGT 59.002 39.130 0.00 0.00 0.00 3.16
824 830 4.250464 AGCAAAAATGATGATGTGGCAAG 58.750 39.130 0.00 0.00 0.00 4.01
825 831 4.274602 AGCAAAAATGATGATGTGGCAA 57.725 36.364 0.00 0.00 0.00 4.52
826 832 3.965379 AGCAAAAATGATGATGTGGCA 57.035 38.095 0.00 0.00 0.00 4.92
827 833 5.813672 ACATAAGCAAAAATGATGATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
828 834 7.229228 CACATAAGCAAAAATGATGATGTGG 57.771 36.000 14.08 0.34 39.34 4.17
829 835 6.237996 GCCACATAAGCAAAAATGATGATGTG 60.238 38.462 14.69 14.69 41.53 3.21
830 836 5.813672 GCCACATAAGCAAAAATGATGATGT 59.186 36.000 0.00 0.00 0.00 3.06
831 837 5.813157 TGCCACATAAGCAAAAATGATGATG 59.187 36.000 0.00 0.00 37.28 3.07
832 838 5.979993 TGCCACATAAGCAAAAATGATGAT 58.020 33.333 0.00 0.00 37.28 2.45
833 839 5.402997 TGCCACATAAGCAAAAATGATGA 57.597 34.783 0.00 0.00 37.28 2.92
834 840 6.046593 AGATGCCACATAAGCAAAAATGATG 58.953 36.000 0.00 0.00 44.83 3.07
835 841 6.229936 AGATGCCACATAAGCAAAAATGAT 57.770 33.333 0.00 0.00 44.83 2.45
836 842 5.664294 AGATGCCACATAAGCAAAAATGA 57.336 34.783 0.00 0.00 44.83 2.57
837 843 6.982141 ACATAGATGCCACATAAGCAAAAATG 59.018 34.615 0.00 0.00 44.83 2.32
838 844 7.116075 ACATAGATGCCACATAAGCAAAAAT 57.884 32.000 0.00 0.00 44.83 1.82
839 845 6.528537 ACATAGATGCCACATAAGCAAAAA 57.471 33.333 0.00 0.00 44.83 1.94
840 846 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
841 847 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
842 848 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
843 849 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
844 850 6.369065 GGTAGTAACATAGATGCCACATAAGC 59.631 42.308 0.00 0.00 0.00 3.09
845 851 7.671302 AGGTAGTAACATAGATGCCACATAAG 58.329 38.462 0.00 0.00 0.00 1.73
846 852 7.612065 AGGTAGTAACATAGATGCCACATAA 57.388 36.000 0.00 0.00 0.00 1.90
847 853 8.749354 CATAGGTAGTAACATAGATGCCACATA 58.251 37.037 0.00 0.00 0.00 2.29
848 854 7.235606 ACATAGGTAGTAACATAGATGCCACAT 59.764 37.037 0.00 0.00 0.00 3.21
849 855 6.553476 ACATAGGTAGTAACATAGATGCCACA 59.447 38.462 0.00 0.00 0.00 4.17
850 856 6.994221 ACATAGGTAGTAACATAGATGCCAC 58.006 40.000 0.00 0.00 0.00 5.01
851 857 7.612065 AACATAGGTAGTAACATAGATGCCA 57.388 36.000 0.00 0.00 0.00 4.92
852 858 8.804204 AGTAACATAGGTAGTAACATAGATGCC 58.196 37.037 0.00 0.00 0.00 4.40
853 859 9.843334 GAGTAACATAGGTAGTAACATAGATGC 57.157 37.037 0.00 0.00 0.00 3.91
855 861 9.531158 GGGAGTAACATAGGTAGTAACATAGAT 57.469 37.037 0.00 0.00 0.00 1.98
856 862 8.505246 TGGGAGTAACATAGGTAGTAACATAGA 58.495 37.037 0.00 0.00 0.00 1.98
857 863 8.574737 GTGGGAGTAACATAGGTAGTAACATAG 58.425 40.741 0.00 0.00 0.00 2.23
858 864 8.284435 AGTGGGAGTAACATAGGTAGTAACATA 58.716 37.037 0.00 0.00 0.00 2.29
859 865 7.130775 AGTGGGAGTAACATAGGTAGTAACAT 58.869 38.462 0.00 0.00 0.00 2.71
860 866 6.496743 AGTGGGAGTAACATAGGTAGTAACA 58.503 40.000 0.00 0.00 0.00 2.41
861 867 8.574737 CATAGTGGGAGTAACATAGGTAGTAAC 58.425 40.741 0.00 0.00 0.00 2.50
862 868 8.505246 TCATAGTGGGAGTAACATAGGTAGTAA 58.495 37.037 0.00 0.00 0.00 2.24
863 869 7.941238 GTCATAGTGGGAGTAACATAGGTAGTA 59.059 40.741 0.00 0.00 0.00 1.82
864 870 6.776603 GTCATAGTGGGAGTAACATAGGTAGT 59.223 42.308 0.00 0.00 0.00 2.73
865 871 6.208994 GGTCATAGTGGGAGTAACATAGGTAG 59.791 46.154 0.00 0.00 0.00 3.18
866 872 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
867 873 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
868 874 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
869 875 5.509840 GCTGGTCATAGTGGGAGTAACATAG 60.510 48.000 0.00 0.00 0.00 2.23
870 876 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
871 877 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
872 878 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
873 879 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
874 880 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
875 881 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
876 882 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
877 883 0.467384 CAGGCTGGTCATAGTGGGAG 59.533 60.000 6.61 0.00 0.00 4.30
878 884 0.042581 TCAGGCTGGTCATAGTGGGA 59.957 55.000 15.73 0.00 0.00 4.37
879 885 0.179000 GTCAGGCTGGTCATAGTGGG 59.821 60.000 15.73 0.00 0.00 4.61
880 886 0.904649 TGTCAGGCTGGTCATAGTGG 59.095 55.000 15.73 0.00 0.00 4.00
881 887 1.737029 CGTGTCAGGCTGGTCATAGTG 60.737 57.143 15.73 3.46 0.00 2.74
882 888 0.532573 CGTGTCAGGCTGGTCATAGT 59.467 55.000 15.73 0.00 0.00 2.12
883 889 0.807667 GCGTGTCAGGCTGGTCATAG 60.808 60.000 15.73 12.76 0.00 2.23
884 890 1.218047 GCGTGTCAGGCTGGTCATA 59.782 57.895 15.73 0.00 0.00 2.15
885 891 2.046892 GCGTGTCAGGCTGGTCAT 60.047 61.111 15.73 0.00 0.00 3.06
886 892 2.715532 GAAGCGTGTCAGGCTGGTCA 62.716 60.000 20.10 11.60 38.53 4.02
887 893 2.029844 GAAGCGTGTCAGGCTGGTC 61.030 63.158 20.10 11.46 38.53 4.02
888 894 2.031163 GAAGCGTGTCAGGCTGGT 59.969 61.111 20.10 6.12 38.53 4.00
889 895 2.743928 GGAAGCGTGTCAGGCTGG 60.744 66.667 20.10 0.00 38.53 4.85
890 896 3.114616 CGGAAGCGTGTCAGGCTG 61.115 66.667 20.10 8.58 38.53 4.85
891 897 3.303135 TCGGAAGCGTGTCAGGCT 61.303 61.111 14.19 14.19 41.64 4.58
892 898 3.112709 GTCGGAAGCGTGTCAGGC 61.113 66.667 9.52 9.52 0.00 4.85
893 899 1.734477 CAGTCGGAAGCGTGTCAGG 60.734 63.158 0.00 0.00 0.00 3.86
894 900 2.375766 GCAGTCGGAAGCGTGTCAG 61.376 63.158 0.00 0.00 0.00 3.51
895 901 2.355837 GCAGTCGGAAGCGTGTCA 60.356 61.111 0.00 0.00 0.00 3.58
1007 1013 3.522731 CCAGAGGGAGAGGCGACG 61.523 72.222 0.00 0.00 35.59 5.12
1046 1052 1.909228 ACCTGGTGGTTCAACGACA 59.091 52.632 4.95 0.00 46.05 4.35
1047 1053 4.870190 ACCTGGTGGTTCAACGAC 57.130 55.556 0.00 0.00 46.05 4.34
1122 1128 4.216257 TGGCTTGCAGTAAAGAAATCAGAC 59.784 41.667 0.00 0.00 0.00 3.51
1123 1129 4.216257 GTGGCTTGCAGTAAAGAAATCAGA 59.784 41.667 0.00 0.00 0.00 3.27
1124 1130 4.022935 TGTGGCTTGCAGTAAAGAAATCAG 60.023 41.667 0.00 0.00 0.00 2.90
1130 1136 2.040278 AGGATGTGGCTTGCAGTAAAGA 59.960 45.455 0.00 0.00 0.00 2.52
1146 1152 2.809665 GCCAGCTTGGATGTAGAGGATG 60.810 54.545 6.40 0.00 40.96 3.51
1147 1153 1.419387 GCCAGCTTGGATGTAGAGGAT 59.581 52.381 6.40 0.00 40.96 3.24
1148 1154 0.833287 GCCAGCTTGGATGTAGAGGA 59.167 55.000 6.40 0.00 40.96 3.71
1149 1155 0.179034 GGCCAGCTTGGATGTAGAGG 60.179 60.000 0.00 0.00 40.96 3.69
1150 1156 0.835941 AGGCCAGCTTGGATGTAGAG 59.164 55.000 5.01 0.00 40.96 2.43
1151 1157 1.210478 GAAGGCCAGCTTGGATGTAGA 59.790 52.381 5.01 0.00 40.96 2.59
1152 1158 1.065199 TGAAGGCCAGCTTGGATGTAG 60.065 52.381 5.01 0.00 40.96 2.74
1153 1159 0.991146 TGAAGGCCAGCTTGGATGTA 59.009 50.000 5.01 0.00 40.96 2.29
1154 1160 0.323178 CTGAAGGCCAGCTTGGATGT 60.323 55.000 5.01 0.00 40.96 3.06
1155 1161 2.490165 CTGAAGGCCAGCTTGGATG 58.510 57.895 5.01 0.00 40.96 3.51
1163 1169 1.731720 GTACTGAAGCTGAAGGCCAG 58.268 55.000 5.01 0.00 45.67 4.85
1164 1170 0.037326 CGTACTGAAGCTGAAGGCCA 60.037 55.000 5.01 0.00 43.05 5.36
1165 1171 0.741221 CCGTACTGAAGCTGAAGGCC 60.741 60.000 0.00 0.00 43.05 5.19
1166 1172 1.362406 GCCGTACTGAAGCTGAAGGC 61.362 60.000 0.00 0.00 42.19 4.35
1167 1173 1.078759 CGCCGTACTGAAGCTGAAGG 61.079 60.000 0.00 0.00 0.00 3.46
1168 1174 1.078759 CCGCCGTACTGAAGCTGAAG 61.079 60.000 0.00 0.00 0.00 3.02
1169 1175 1.080093 CCGCCGTACTGAAGCTGAA 60.080 57.895 0.00 0.00 0.00 3.02
1176 1182 2.872557 CGACTTCCGCCGTACTGA 59.127 61.111 0.00 0.00 0.00 3.41
1212 1220 2.738521 CGGTGTGAGGTCGGCAAG 60.739 66.667 0.00 0.00 0.00 4.01
1229 1237 0.250338 AGCAAGAACAACGGGGACTC 60.250 55.000 0.00 0.00 0.00 3.36
1230 1238 0.535102 CAGCAAGAACAACGGGGACT 60.535 55.000 0.00 0.00 0.00 3.85
1231 1239 1.949257 CAGCAAGAACAACGGGGAC 59.051 57.895 0.00 0.00 0.00 4.46
1232 1240 1.896660 GCAGCAAGAACAACGGGGA 60.897 57.895 0.00 0.00 0.00 4.81
1233 1241 2.644992 GCAGCAAGAACAACGGGG 59.355 61.111 0.00 0.00 0.00 5.73
1235 1243 0.102120 TTTGGCAGCAAGAACAACGG 59.898 50.000 0.00 0.00 0.00 4.44
1297 1306 3.141488 CAGACGGCTAGGCGAGGT 61.141 66.667 40.86 22.14 0.00 3.85
1310 1319 2.574736 GCTCGACGCGACTCAGAC 60.575 66.667 15.93 0.00 0.00 3.51
1351 1360 1.072331 GTGATGGTGACTTGAGGTGGT 59.928 52.381 0.00 0.00 0.00 4.16
1352 1361 1.611673 GGTGATGGTGACTTGAGGTGG 60.612 57.143 0.00 0.00 0.00 4.61
1354 1363 0.321671 CGGTGATGGTGACTTGAGGT 59.678 55.000 0.00 0.00 0.00 3.85
1399 1408 1.971695 GGCTTAAAGCTGGCCACGT 60.972 57.895 0.00 0.00 44.69 4.49
1454 1463 2.507992 CTGCGCTCAAGTCGGAGG 60.508 66.667 9.73 0.00 40.85 4.30
1460 1469 3.360340 GCAAGGCTGCGCTCAAGT 61.360 61.111 9.73 0.00 39.20 3.16
1534 1543 1.228657 GGACAGGCAGGTTTGACGTC 61.229 60.000 9.11 9.11 37.43 4.34
1535 1544 1.227853 GGACAGGCAGGTTTGACGT 60.228 57.895 0.00 0.00 37.43 4.34
1536 1545 2.317609 CGGACAGGCAGGTTTGACG 61.318 63.158 0.00 0.00 37.43 4.35
1559 1568 1.964891 TGACTCGAGCGAAGACCGT 60.965 57.895 13.61 0.00 41.15 4.83
1572 1581 2.276116 TGCGGAGACCCAGTGACTC 61.276 63.158 0.00 0.00 0.00 3.36
1577 1586 2.932234 CGAAGTGCGGAGACCCAGT 61.932 63.158 0.00 0.00 36.03 4.00
1578 1587 2.125912 CGAAGTGCGGAGACCCAG 60.126 66.667 0.00 0.00 36.03 4.45
1704 1713 2.629617 AGAACGGAAAAAGAGTCGGGTA 59.370 45.455 0.00 0.00 0.00 3.69
1706 1715 1.798813 CAGAACGGAAAAAGAGTCGGG 59.201 52.381 0.00 0.00 0.00 5.14
1745 1754 1.003355 CTCGCCCTTGTGACCATGT 60.003 57.895 0.00 0.00 0.00 3.21
1862 1871 1.957668 ATCGCATGAGCAGCAACATA 58.042 45.000 0.00 0.00 42.27 2.29
1863 1872 1.600957 GTATCGCATGAGCAGCAACAT 59.399 47.619 0.00 0.00 42.27 2.71
1864 1873 1.009078 GTATCGCATGAGCAGCAACA 58.991 50.000 0.00 0.00 42.27 3.33
1895 1913 2.893215 TCGACACCTTTCCTCCTCTA 57.107 50.000 0.00 0.00 0.00 2.43
1907 1925 2.232941 TGGGAGAACAGTAATCGACACC 59.767 50.000 0.00 0.00 0.00 4.16
1941 1959 6.763135 GTCTTATCCATCAGCAGTATGTCAAA 59.237 38.462 0.00 0.00 39.31 2.69
1942 1960 6.127083 TGTCTTATCCATCAGCAGTATGTCAA 60.127 38.462 0.00 0.00 39.31 3.18
1959 1977 5.491982 AGTGTCCACTCCAAATGTCTTATC 58.508 41.667 0.00 0.00 36.92 1.75
1989 2007 0.950555 TAGCTCGTTTGTGCTGCCTG 60.951 55.000 0.00 0.00 44.20 4.85
2001 2019 1.418334 AGGCAGGATTGATAGCTCGT 58.582 50.000 0.00 0.00 0.00 4.18
2058 2076 1.855213 GCCGACAACTCAATGCAGCA 61.855 55.000 0.00 0.00 0.00 4.41
2061 2079 2.324330 CGGCCGACAACTCAATGCA 61.324 57.895 24.07 0.00 0.00 3.96
2063 2081 2.034879 AGCGGCCGACAACTCAATG 61.035 57.895 33.48 0.00 0.00 2.82
2064 2082 2.034879 CAGCGGCCGACAACTCAAT 61.035 57.895 33.48 0.00 0.00 2.57
2070 2088 4.382320 GGGTACAGCGGCCGACAA 62.382 66.667 33.48 7.70 0.00 3.18
2094 2112 4.368543 GAAACGGGACCGAGGCGT 62.369 66.667 18.80 2.73 42.83 5.68
2105 2123 2.391389 GCTCGGCAAGAGGAAACGG 61.391 63.158 9.94 0.00 46.91 4.44
2156 2174 4.812476 CGGTCGGCGCCTCAATGA 62.812 66.667 26.68 11.29 0.00 2.57
2202 2235 1.006571 GCGAGTTGGAGACGGACAA 60.007 57.895 0.00 0.00 0.00 3.18
2227 2260 4.595538 ACCGCGACGCCTCAACAA 62.596 61.111 15.34 0.00 0.00 2.83
2267 2300 2.163509 AGTAGAAGCGAGTCAGAGCAA 58.836 47.619 0.00 0.00 35.48 3.91
2317 2350 0.178975 CGGAGAGGGCAGAGGTAGAT 60.179 60.000 0.00 0.00 0.00 1.98
2324 2357 3.138798 GTACGCGGAGAGGGCAGA 61.139 66.667 12.47 0.00 36.05 4.26
2362 2395 1.146930 CCTACATGCCACGGATGCT 59.853 57.895 0.00 0.00 0.00 3.79
2447 2480 2.291605 TGCTACTCCCTTCACTCTGCTA 60.292 50.000 0.00 0.00 0.00 3.49
2502 4766 5.846203 AGCTAGCAAACATGAAAACACAAT 58.154 33.333 18.83 0.00 0.00 2.71
2564 4828 3.006940 GCCGTTGAGTGGTTCATATGAA 58.993 45.455 14.23 14.23 35.27 2.57
2582 4846 4.997395 AGTAGGTAATTGCATTGATAGCCG 59.003 41.667 0.00 0.00 0.00 5.52
2641 4905 3.719268 TGAGCACATAACCTTGTCCAT 57.281 42.857 0.00 0.00 0.00 3.41
2661 4925 2.320781 ACATAGCGGCCTTAGAGTGAT 58.679 47.619 0.00 0.00 0.00 3.06
2665 4929 1.068472 CCGTACATAGCGGCCTTAGAG 60.068 57.143 0.00 0.00 42.82 2.43
2730 4994 2.232941 GACCGTCCACAGATTACCTTGA 59.767 50.000 0.00 0.00 0.00 3.02
2737 5001 3.787394 ACGGACCGTCCACAGATT 58.213 55.556 15.37 0.00 33.69 2.40
2765 5029 5.144692 AGATGGATATCACCTGATTCGTG 57.855 43.478 4.83 0.00 35.70 4.35
2767 5031 5.809562 GCTTAGATGGATATCACCTGATTCG 59.190 44.000 4.83 0.00 35.70 3.34
2860 5127 5.147330 ACAAACGATGAGTCATTGTCCTA 57.853 39.130 23.48 0.00 37.48 2.94
2871 5138 2.349438 CCGTCCAACAACAAACGATGAG 60.349 50.000 0.00 0.00 37.31 2.90
2904 5171 2.509786 GAATTGTACGGGCGGCGA 60.510 61.111 12.98 0.00 0.00 5.54
2915 5182 3.941483 GGAGTTGATGTGGATCGAATTGT 59.059 43.478 0.00 0.00 0.00 2.71
2926 5193 2.546795 GCGATCCTAGGGAGTTGATGTG 60.547 54.545 9.46 0.00 34.05 3.21
2980 5247 3.982372 GAGTCAATCGTGGGCGCGA 62.982 63.158 12.10 5.34 45.32 5.87
3138 5405 3.098555 GGCACGTTGAATAGGCCG 58.901 61.111 0.00 0.00 34.56 6.13
3160 5427 1.457346 CTACCGGTGTCCGTTAGTCT 58.543 55.000 19.93 0.00 46.80 3.24
3407 5678 2.358615 TGCGTGATGGTGCTGACC 60.359 61.111 0.00 0.00 43.48 4.02
3437 5708 2.835764 ACCTGTTCCATTAGTAAGCGGA 59.164 45.455 0.64 0.64 0.00 5.54
3447 5718 1.106351 TTGCGCACACCTGTTCCATT 61.106 50.000 11.12 0.00 0.00 3.16
3469 5740 2.027561 AGATTAAACTGCACGGGTAGCA 60.028 45.455 1.35 0.00 40.19 3.49
3472 5743 4.804868 TGTAGATTAAACTGCACGGGTA 57.195 40.909 0.00 0.00 0.00 3.69
3473 5744 3.688694 TGTAGATTAAACTGCACGGGT 57.311 42.857 0.00 0.00 0.00 5.28
3483 5754 3.199677 CGGCGGGTTGATGTAGATTAAA 58.800 45.455 0.00 0.00 0.00 1.52
3560 5831 2.782222 CGGCGGCTTAGGCAGACTA 61.782 63.158 7.61 0.00 39.52 2.59
3570 5841 3.070590 ACTTAATATAGTTCCGGCGGCTT 59.929 43.478 23.83 11.51 0.00 4.35
3589 5860 0.034059 CTCAGGCAGACCAACGACTT 59.966 55.000 0.00 0.00 39.06 3.01
3825 6118 2.399916 TGATGATCATTGCGGTGACA 57.600 45.000 10.14 0.00 0.00 3.58
3826 6119 2.679837 AGTTGATGATCATTGCGGTGAC 59.320 45.455 10.14 2.02 0.00 3.67
3827 6120 2.989909 AGTTGATGATCATTGCGGTGA 58.010 42.857 10.14 0.00 0.00 4.02
3828 6121 3.127376 TGAAGTTGATGATCATTGCGGTG 59.873 43.478 10.14 0.00 0.00 4.94
3829 6122 3.127548 GTGAAGTTGATGATCATTGCGGT 59.872 43.478 10.14 0.00 0.00 5.68
3830 6123 3.688272 GTGAAGTTGATGATCATTGCGG 58.312 45.455 10.14 0.00 0.00 5.69
3831 6124 3.348309 CGTGAAGTTGATGATCATTGCG 58.652 45.455 10.14 2.85 0.00 4.85
3832 6125 3.127548 ACCGTGAAGTTGATGATCATTGC 59.872 43.478 10.14 3.52 0.00 3.56
3833 6126 4.437794 CCACCGTGAAGTTGATGATCATTG 60.438 45.833 10.14 0.00 0.00 2.82
3834 6127 3.691118 CCACCGTGAAGTTGATGATCATT 59.309 43.478 10.14 0.00 0.00 2.57
3835 6128 3.055167 TCCACCGTGAAGTTGATGATCAT 60.055 43.478 8.25 8.25 0.00 2.45
3951 6262 5.885352 CGCAATGATATATTAACCCCATCCA 59.115 40.000 0.00 0.00 0.00 3.41
3955 6266 7.667635 TCAAATCGCAATGATATATTAACCCCA 59.332 33.333 0.00 0.00 35.84 4.96
3963 6274 7.879677 TGAGTCCTTCAAATCGCAATGATATAT 59.120 33.333 0.00 0.00 35.84 0.86
4166 6480 6.658188 AACCGGAATCTTTATTTTGAACCA 57.342 33.333 9.46 0.00 0.00 3.67
4226 6540 6.239317 AAAGCTTCAAAACTTTATGGGAGACC 60.239 38.462 0.00 0.00 41.99 3.85
4354 6671 2.088423 GATACCCATGTTTGAACCGCA 58.912 47.619 0.00 0.00 0.00 5.69
4463 6780 5.301805 CCCCCAAGTGACCATATACATTTTC 59.698 44.000 0.00 0.00 0.00 2.29
4469 6786 1.774856 AGCCCCCAAGTGACCATATAC 59.225 52.381 0.00 0.00 0.00 1.47
4735 7055 2.750888 GCGTTGCCCCGATCAAGAC 61.751 63.158 0.00 0.00 0.00 3.01
4796 7118 5.065474 TCAGTAAACCGTTTCAAAGGAGTTG 59.935 40.000 0.00 0.00 38.71 3.16
4800 7122 5.369833 TGATCAGTAAACCGTTTCAAAGGA 58.630 37.500 0.00 0.00 0.00 3.36
4807 7129 5.957798 TCGAGTATGATCAGTAAACCGTTT 58.042 37.500 0.09 1.40 0.00 3.60
4826 7148 7.023575 CCAAATTGTAAGGTTTCTGATTCGAG 58.976 38.462 0.00 0.00 0.00 4.04
4958 7291 0.890996 GACCAAGGTCAAGCTGGGTG 60.891 60.000 12.94 0.00 44.02 4.61
5108 7492 5.222079 TGTAGTCTTATCCTGCACACAAA 57.778 39.130 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.