Multiple sequence alignment - TraesCS5A01G175200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G175200 chr5A 100.000 4468 0 0 1 4468 368544842 368549309 0.000000e+00 8251.0
1 TraesCS5A01G175200 chr5A 84.848 66 8 2 809 873 6209211 6209147 1.040000e-06 65.8
2 TraesCS5A01G175200 chr5B 94.527 2631 103 28 875 3483 317313200 317310589 0.000000e+00 4023.0
3 TraesCS5A01G175200 chr5B 90.883 691 41 13 3796 4467 317309795 317309108 0.000000e+00 907.0
4 TraesCS5A01G175200 chr5B 95.872 218 7 1 3472 3687 317310520 317310303 7.110000e-93 351.0
5 TraesCS5A01G175200 chr5B 98.214 112 1 1 3683 3793 317310048 317309937 1.270000e-45 195.0
6 TraesCS5A01G175200 chr5D 93.286 2413 107 26 1403 3793 279315227 279312848 0.000000e+00 3507.0
7 TraesCS5A01G175200 chr5D 91.763 692 34 9 3796 4467 279312704 279312016 0.000000e+00 941.0
8 TraesCS5A01G175200 chr5D 95.941 542 10 5 875 1405 279315849 279315309 0.000000e+00 869.0
9 TraesCS5A01G175200 chr5D 93.902 82 5 0 1 82 279315927 279315846 1.690000e-24 124.0
10 TraesCS5A01G175200 chr4B 84.627 644 93 3 230 867 270201673 270201030 1.750000e-178 636.0
11 TraesCS5A01G175200 chr4B 78.777 556 86 19 3796 4322 622315689 622315137 1.190000e-90 344.0
12 TraesCS5A01G175200 chr4B 78.456 557 86 21 3796 4322 134360449 134361001 2.580000e-87 333.0
13 TraesCS5A01G175200 chr7B 79.676 556 81 19 3796 4322 742266588 742267140 5.460000e-99 372.0
14 TraesCS5A01G175200 chr7A 79.385 553 80 21 3796 4318 113454308 113453760 4.250000e-95 359.0
15 TraesCS5A01G175200 chr7A 94.545 55 2 1 4413 4467 595810267 595810214 2.860000e-12 84.2
16 TraesCS5A01G175200 chr6D 79.091 550 86 21 3796 4322 386159562 386159019 7.110000e-93 351.0
17 TraesCS5A01G175200 chr6D 90.909 55 4 1 4413 4467 319010671 319010618 6.200000e-09 73.1
18 TraesCS5A01G175200 chr7D 78.456 557 86 21 3796 4322 1490028 1489476 2.580000e-87 333.0
19 TraesCS5A01G175200 chr7D 78.159 554 86 22 3796 4322 384066529 384065984 2.010000e-83 320.0
20 TraesCS5A01G175200 chr7D 94.231 52 2 1 4416 4467 384065985 384065935 1.330000e-10 78.7
21 TraesCS5A01G175200 chr2B 78.159 554 88 19 3796 4322 45563682 45563135 5.580000e-84 322.0
22 TraesCS5A01G175200 chr4D 78.588 425 61 16 475 871 464518445 464518867 2.060000e-63 254.0
23 TraesCS5A01G175200 chr2D 85.455 220 27 3 661 875 402937531 402937312 1.620000e-54 224.0
24 TraesCS5A01G175200 chr6A 92.727 55 3 1 4413 4467 106681827 106681774 1.330000e-10 78.7
25 TraesCS5A01G175200 chr3B 92.727 55 3 1 4413 4467 125940168 125940115 1.330000e-10 78.7
26 TraesCS5A01G175200 chr2A 92.727 55 3 1 4413 4467 364500459 364500406 1.330000e-10 78.7
27 TraesCS5A01G175200 chr1D 92.727 55 3 1 4413 4467 107596716 107596769 1.330000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G175200 chr5A 368544842 368549309 4467 False 8251.00 8251 100.000 1 4468 1 chr5A.!!$F1 4467
1 TraesCS5A01G175200 chr5B 317309108 317313200 4092 True 1369.00 4023 94.874 875 4467 4 chr5B.!!$R1 3592
2 TraesCS5A01G175200 chr5D 279312016 279315927 3911 True 1360.25 3507 93.723 1 4467 4 chr5D.!!$R1 4466
3 TraesCS5A01G175200 chr4B 270201030 270201673 643 True 636.00 636 84.627 230 867 1 chr4B.!!$R1 637
4 TraesCS5A01G175200 chr4B 622315137 622315689 552 True 344.00 344 78.777 3796 4322 1 chr4B.!!$R2 526
5 TraesCS5A01G175200 chr4B 134360449 134361001 552 False 333.00 333 78.456 3796 4322 1 chr4B.!!$F1 526
6 TraesCS5A01G175200 chr7B 742266588 742267140 552 False 372.00 372 79.676 3796 4322 1 chr7B.!!$F1 526
7 TraesCS5A01G175200 chr7A 113453760 113454308 548 True 359.00 359 79.385 3796 4318 1 chr7A.!!$R1 522
8 TraesCS5A01G175200 chr6D 386159019 386159562 543 True 351.00 351 79.091 3796 4322 1 chr6D.!!$R2 526
9 TraesCS5A01G175200 chr7D 1489476 1490028 552 True 333.00 333 78.456 3796 4322 1 chr7D.!!$R1 526
10 TraesCS5A01G175200 chr2B 45563135 45563682 547 True 322.00 322 78.159 3796 4322 1 chr2B.!!$R1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
497 499 0.034059 AGCTCAACTTGTCTGGACCG 59.966 55.0 0.00 0.00 0.0 4.79 F
500 502 0.391597 TCAACTTGTCTGGACCGGTC 59.608 55.0 27.04 27.04 0.0 4.79 F
1875 1978 0.098200 CTGTCATGCTTGTGATGCCG 59.902 55.0 0.00 0.00 0.0 5.69 F
1933 2036 0.613260 TCTTCCTAACATGCCGCTGT 59.387 50.0 0.00 0.00 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 1708 0.371989 TTATTCGGTGATGCAACGCG 59.628 50.000 3.53 3.53 44.89 6.01 R
2424 2543 0.743688 ACCGCAACATGCTTGAACAA 59.256 45.000 6.60 0.00 42.25 2.83 R
3356 3476 1.210234 CCATATGCCTCAGTGACACCA 59.790 52.381 0.84 0.00 0.00 4.17 R
3487 3689 1.725641 TTGCATTCTCACAGGTAGCG 58.274 50.000 0.00 0.00 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.524053 TCATCTTCTAGAAGCGACACCTA 58.476 43.478 25.04 8.00 38.28 3.08
66 67 6.806249 TGAAAGCTTATTTGCGTAAAATCAGG 59.194 34.615 1.94 0.00 39.29 3.86
71 72 6.403855 GCTTATTTGCGTAAAATCAGGGTACA 60.404 38.462 1.94 0.00 39.29 2.90
78 79 5.671493 CGTAAAATCAGGGTACAGAGGATT 58.329 41.667 0.00 0.00 0.00 3.01
79 80 5.753921 CGTAAAATCAGGGTACAGAGGATTC 59.246 44.000 0.00 0.00 0.00 2.52
80 81 5.779241 AAAATCAGGGTACAGAGGATTCA 57.221 39.130 0.00 0.00 0.00 2.57
81 82 5.779241 AAATCAGGGTACAGAGGATTCAA 57.221 39.130 0.00 0.00 0.00 2.69
82 83 5.983333 AATCAGGGTACAGAGGATTCAAT 57.017 39.130 0.00 0.00 0.00 2.57
83 84 5.559148 ATCAGGGTACAGAGGATTCAATC 57.441 43.478 0.00 0.00 0.00 2.67
84 85 4.624913 TCAGGGTACAGAGGATTCAATCT 58.375 43.478 0.00 0.00 0.00 2.40
85 86 5.777449 TCAGGGTACAGAGGATTCAATCTA 58.223 41.667 0.00 0.00 0.00 1.98
86 87 6.385443 TCAGGGTACAGAGGATTCAATCTAT 58.615 40.000 0.00 0.00 0.00 1.98
87 88 6.846505 TCAGGGTACAGAGGATTCAATCTATT 59.153 38.462 0.00 0.00 0.00 1.73
88 89 7.015682 TCAGGGTACAGAGGATTCAATCTATTC 59.984 40.741 0.00 0.00 0.00 1.75
89 90 6.271159 AGGGTACAGAGGATTCAATCTATTCC 59.729 42.308 0.00 0.00 0.00 3.01
90 91 6.043243 GGGTACAGAGGATTCAATCTATTCCA 59.957 42.308 0.00 0.00 0.00 3.53
91 92 7.256835 GGGTACAGAGGATTCAATCTATTCCAT 60.257 40.741 0.00 0.00 0.00 3.41
92 93 8.160106 GGTACAGAGGATTCAATCTATTCCATT 58.840 37.037 0.00 0.00 0.00 3.16
93 94 9.213799 GTACAGAGGATTCAATCTATTCCATTC 57.786 37.037 0.00 0.00 0.00 2.67
94 95 7.809238 ACAGAGGATTCAATCTATTCCATTCA 58.191 34.615 0.00 0.00 0.00 2.57
95 96 8.446394 ACAGAGGATTCAATCTATTCCATTCAT 58.554 33.333 0.00 0.00 0.00 2.57
96 97 8.731605 CAGAGGATTCAATCTATTCCATTCATG 58.268 37.037 0.00 0.00 0.00 3.07
108 109 3.728076 CCATTCATGGCTTTGATCCAG 57.272 47.619 0.00 0.00 41.75 3.86
109 110 3.028850 CCATTCATGGCTTTGATCCAGT 58.971 45.455 0.00 0.00 41.75 4.00
110 111 3.449737 CCATTCATGGCTTTGATCCAGTT 59.550 43.478 0.00 0.00 41.75 3.16
111 112 4.430007 CATTCATGGCTTTGATCCAGTTG 58.570 43.478 0.00 0.00 36.98 3.16
112 113 3.438216 TCATGGCTTTGATCCAGTTGA 57.562 42.857 0.00 0.00 36.98 3.18
113 114 3.972133 TCATGGCTTTGATCCAGTTGAT 58.028 40.909 0.00 0.00 36.98 2.57
114 115 3.697542 TCATGGCTTTGATCCAGTTGATG 59.302 43.478 0.00 0.00 36.98 3.07
115 116 1.820519 TGGCTTTGATCCAGTTGATGC 59.179 47.619 0.00 0.00 32.41 3.91
116 117 1.820519 GGCTTTGATCCAGTTGATGCA 59.179 47.619 0.00 0.00 32.41 3.96
117 118 2.416431 GGCTTTGATCCAGTTGATGCAC 60.416 50.000 0.00 0.00 32.41 4.57
118 119 2.730090 GCTTTGATCCAGTTGATGCACG 60.730 50.000 0.00 0.00 32.41 5.34
119 120 2.183478 TTGATCCAGTTGATGCACGT 57.817 45.000 0.00 0.00 32.41 4.49
120 121 3.326836 TTGATCCAGTTGATGCACGTA 57.673 42.857 0.00 0.00 32.41 3.57
121 122 3.326836 TGATCCAGTTGATGCACGTAA 57.673 42.857 0.00 0.00 32.41 3.18
122 123 3.872696 TGATCCAGTTGATGCACGTAAT 58.127 40.909 0.00 0.00 32.41 1.89
123 124 5.017294 TGATCCAGTTGATGCACGTAATA 57.983 39.130 0.00 0.00 32.41 0.98
124 125 4.808895 TGATCCAGTTGATGCACGTAATAC 59.191 41.667 0.00 0.00 32.41 1.89
125 126 4.195225 TCCAGTTGATGCACGTAATACA 57.805 40.909 0.00 0.00 0.00 2.29
126 127 4.765273 TCCAGTTGATGCACGTAATACAT 58.235 39.130 0.00 0.00 0.00 2.29
127 128 4.570369 TCCAGTTGATGCACGTAATACATG 59.430 41.667 0.00 0.00 0.00 3.21
128 129 4.274069 CAGTTGATGCACGTAATACATGC 58.726 43.478 4.34 4.34 39.88 4.06
134 135 3.433709 TGCACGTAATACATGCAATTGC 58.566 40.909 23.69 23.69 45.96 3.56
135 136 3.128415 TGCACGTAATACATGCAATTGCT 59.872 39.130 29.37 13.50 45.96 3.91
136 137 4.333926 TGCACGTAATACATGCAATTGCTA 59.666 37.500 29.37 16.96 45.96 3.49
137 138 5.008514 TGCACGTAATACATGCAATTGCTAT 59.991 36.000 29.37 18.34 45.96 2.97
138 139 6.203723 TGCACGTAATACATGCAATTGCTATA 59.796 34.615 29.37 18.76 45.96 1.31
139 140 6.738200 GCACGTAATACATGCAATTGCTATAG 59.262 38.462 29.37 18.26 42.66 1.31
140 141 7.571244 GCACGTAATACATGCAATTGCTATAGT 60.571 37.037 29.37 22.21 42.66 2.12
141 142 7.741652 CACGTAATACATGCAATTGCTATAGTG 59.258 37.037 29.37 21.45 42.66 2.74
142 143 7.655732 ACGTAATACATGCAATTGCTATAGTGA 59.344 33.333 29.37 9.35 42.66 3.41
143 144 8.495148 CGTAATACATGCAATTGCTATAGTGAA 58.505 33.333 29.37 8.59 42.66 3.18
144 145 9.599322 GTAATACATGCAATTGCTATAGTGAAC 57.401 33.333 29.37 15.22 42.66 3.18
145 146 7.806409 ATACATGCAATTGCTATAGTGAACA 57.194 32.000 29.37 7.09 42.66 3.18
146 147 6.127810 ACATGCAATTGCTATAGTGAACAG 57.872 37.500 29.37 10.27 42.66 3.16
147 148 5.882000 ACATGCAATTGCTATAGTGAACAGA 59.118 36.000 29.37 6.35 42.66 3.41
148 149 6.037940 ACATGCAATTGCTATAGTGAACAGAG 59.962 38.462 29.37 9.12 42.66 3.35
149 150 5.733676 TGCAATTGCTATAGTGAACAGAGA 58.266 37.500 29.37 1.93 42.66 3.10
150 151 6.351711 TGCAATTGCTATAGTGAACAGAGAT 58.648 36.000 29.37 0.00 42.66 2.75
151 152 6.259387 TGCAATTGCTATAGTGAACAGAGATG 59.741 38.462 29.37 0.00 42.66 2.90
152 153 6.259608 GCAATTGCTATAGTGAACAGAGATGT 59.740 38.462 23.21 0.00 38.21 3.06
153 154 7.201679 GCAATTGCTATAGTGAACAGAGATGTT 60.202 37.037 23.21 0.00 38.21 2.71
154 155 7.783090 ATTGCTATAGTGAACAGAGATGTTG 57.217 36.000 0.84 0.00 31.35 3.33
155 156 6.530019 TGCTATAGTGAACAGAGATGTTGA 57.470 37.500 0.84 0.00 31.35 3.18
156 157 6.567959 TGCTATAGTGAACAGAGATGTTGAG 58.432 40.000 0.84 0.00 31.35 3.02
157 158 5.982516 GCTATAGTGAACAGAGATGTTGAGG 59.017 44.000 0.84 0.00 31.35 3.86
158 159 3.051081 AGTGAACAGAGATGTTGAGGC 57.949 47.619 0.00 0.00 31.35 4.70
159 160 2.636893 AGTGAACAGAGATGTTGAGGCT 59.363 45.455 0.00 0.00 31.35 4.58
160 161 2.740981 GTGAACAGAGATGTTGAGGCTG 59.259 50.000 0.00 0.00 31.35 4.85
161 162 2.634453 TGAACAGAGATGTTGAGGCTGA 59.366 45.455 0.00 0.00 31.35 4.26
162 163 3.071457 TGAACAGAGATGTTGAGGCTGAA 59.929 43.478 0.00 0.00 31.35 3.02
163 164 3.331478 ACAGAGATGTTGAGGCTGAAG 57.669 47.619 0.00 0.00 0.00 3.02
164 165 2.902486 ACAGAGATGTTGAGGCTGAAGA 59.098 45.455 0.00 0.00 0.00 2.87
165 166 3.260740 CAGAGATGTTGAGGCTGAAGAC 58.739 50.000 0.00 0.00 0.00 3.01
166 167 2.094286 AGAGATGTTGAGGCTGAAGACG 60.094 50.000 0.00 0.00 0.00 4.18
167 168 1.620819 AGATGTTGAGGCTGAAGACGT 59.379 47.619 0.00 0.00 0.00 4.34
168 169 2.037772 AGATGTTGAGGCTGAAGACGTT 59.962 45.455 0.00 0.00 0.00 3.99
169 170 2.325583 TGTTGAGGCTGAAGACGTTT 57.674 45.000 0.00 0.00 0.00 3.60
170 171 2.639065 TGTTGAGGCTGAAGACGTTTT 58.361 42.857 0.00 0.00 0.00 2.43
171 172 2.612212 TGTTGAGGCTGAAGACGTTTTC 59.388 45.455 11.69 11.69 0.00 2.29
172 173 2.612212 GTTGAGGCTGAAGACGTTTTCA 59.388 45.455 19.20 19.20 35.83 2.69
173 174 2.210116 TGAGGCTGAAGACGTTTTCAC 58.790 47.619 16.80 13.23 33.71 3.18
174 175 2.158957 TGAGGCTGAAGACGTTTTCACT 60.159 45.455 16.80 13.37 33.71 3.41
175 176 2.872858 GAGGCTGAAGACGTTTTCACTT 59.127 45.455 16.80 10.58 33.71 3.16
176 177 2.614057 AGGCTGAAGACGTTTTCACTTG 59.386 45.455 16.80 9.35 33.71 3.16
177 178 2.287009 GGCTGAAGACGTTTTCACTTGG 60.287 50.000 16.80 9.03 33.71 3.61
178 179 2.854805 GCTGAAGACGTTTTCACTTGGC 60.855 50.000 16.80 14.53 33.71 4.52
179 180 1.673920 TGAAGACGTTTTCACTTGGCC 59.326 47.619 16.80 0.00 32.39 5.36
180 181 1.001706 GAAGACGTTTTCACTTGGCCC 60.002 52.381 13.53 0.00 0.00 5.80
181 182 1.164041 AGACGTTTTCACTTGGCCCG 61.164 55.000 0.00 0.00 0.00 6.13
182 183 2.050442 CGTTTTCACTTGGCCCGC 60.050 61.111 0.00 0.00 0.00 6.13
183 184 2.840066 CGTTTTCACTTGGCCCGCA 61.840 57.895 0.00 0.00 0.00 5.69
184 185 1.665442 GTTTTCACTTGGCCCGCAT 59.335 52.632 0.00 0.00 0.00 4.73
185 186 0.388520 GTTTTCACTTGGCCCGCATC 60.389 55.000 0.00 0.00 0.00 3.91
186 187 1.531739 TTTTCACTTGGCCCGCATCC 61.532 55.000 0.00 0.00 0.00 3.51
187 188 2.705312 TTTCACTTGGCCCGCATCCA 62.705 55.000 0.00 0.00 0.00 3.41
188 189 2.440796 CACTTGGCCCGCATCCAT 60.441 61.111 0.00 0.00 32.92 3.41
189 190 2.124151 ACTTGGCCCGCATCCATC 60.124 61.111 0.00 0.00 32.92 3.51
190 191 2.124193 CTTGGCCCGCATCCATCA 60.124 61.111 0.00 0.00 32.92 3.07
191 192 2.440065 TTGGCCCGCATCCATCAC 60.440 61.111 0.00 0.00 32.92 3.06
192 193 4.504596 TGGCCCGCATCCATCACC 62.505 66.667 0.00 0.00 0.00 4.02
194 195 4.545706 GCCCGCATCCATCACCGA 62.546 66.667 0.00 0.00 0.00 4.69
195 196 2.280389 CCCGCATCCATCACCGAG 60.280 66.667 0.00 0.00 0.00 4.63
196 197 2.796193 CCCGCATCCATCACCGAGA 61.796 63.158 0.00 0.00 0.00 4.04
197 198 1.300465 CCGCATCCATCACCGAGAG 60.300 63.158 0.00 0.00 0.00 3.20
198 199 1.439228 CGCATCCATCACCGAGAGT 59.561 57.895 0.00 0.00 0.00 3.24
199 200 0.179100 CGCATCCATCACCGAGAGTT 60.179 55.000 0.00 0.00 0.00 3.01
200 201 1.067060 CGCATCCATCACCGAGAGTTA 59.933 52.381 0.00 0.00 0.00 2.24
201 202 2.474816 GCATCCATCACCGAGAGTTAC 58.525 52.381 0.00 0.00 0.00 2.50
202 203 2.101582 GCATCCATCACCGAGAGTTACT 59.898 50.000 0.00 0.00 0.00 2.24
203 204 3.797184 GCATCCATCACCGAGAGTTACTC 60.797 52.174 3.85 3.85 41.79 2.59
204 205 3.367646 TCCATCACCGAGAGTTACTCT 57.632 47.619 15.44 15.44 44.28 3.24
205 206 3.017442 TCCATCACCGAGAGTTACTCTG 58.983 50.000 20.52 8.83 41.35 3.35
206 207 2.480416 CCATCACCGAGAGTTACTCTGC 60.480 54.545 20.52 10.17 41.35 4.26
207 208 1.174783 TCACCGAGAGTTACTCTGCC 58.825 55.000 20.52 5.32 41.35 4.85
208 209 0.888619 CACCGAGAGTTACTCTGCCA 59.111 55.000 20.52 0.00 41.35 4.92
209 210 1.272490 CACCGAGAGTTACTCTGCCAA 59.728 52.381 20.52 0.00 41.35 4.52
210 211 1.968493 ACCGAGAGTTACTCTGCCAAA 59.032 47.619 20.52 0.00 41.35 3.28
211 212 2.567615 ACCGAGAGTTACTCTGCCAAAT 59.432 45.455 20.52 0.00 41.35 2.32
212 213 3.190874 CCGAGAGTTACTCTGCCAAATC 58.809 50.000 20.52 2.62 41.35 2.17
213 214 3.190874 CGAGAGTTACTCTGCCAAATCC 58.809 50.000 20.52 1.59 41.35 3.01
214 215 3.368427 CGAGAGTTACTCTGCCAAATCCA 60.368 47.826 20.52 0.00 41.35 3.41
215 216 3.935828 GAGAGTTACTCTGCCAAATCCAC 59.064 47.826 20.52 0.00 41.35 4.02
216 217 3.327757 AGAGTTACTCTGCCAAATCCACA 59.672 43.478 14.73 0.00 39.62 4.17
217 218 4.018960 AGAGTTACTCTGCCAAATCCACAT 60.019 41.667 14.73 0.00 39.62 3.21
218 219 5.189736 AGAGTTACTCTGCCAAATCCACATA 59.810 40.000 14.73 0.00 39.62 2.29
219 220 6.006275 AGTTACTCTGCCAAATCCACATAT 57.994 37.500 0.00 0.00 0.00 1.78
220 221 7.071196 AGAGTTACTCTGCCAAATCCACATATA 59.929 37.037 14.73 0.00 39.62 0.86
221 222 6.992715 AGTTACTCTGCCAAATCCACATATAC 59.007 38.462 0.00 0.00 0.00 1.47
222 223 4.718961 ACTCTGCCAAATCCACATATACC 58.281 43.478 0.00 0.00 0.00 2.73
223 224 4.413520 ACTCTGCCAAATCCACATATACCT 59.586 41.667 0.00 0.00 0.00 3.08
224 225 4.717877 TCTGCCAAATCCACATATACCTG 58.282 43.478 0.00 0.00 0.00 4.00
225 226 4.165950 TCTGCCAAATCCACATATACCTGT 59.834 41.667 0.00 0.00 0.00 4.00
226 227 4.460263 TGCCAAATCCACATATACCTGTC 58.540 43.478 0.00 0.00 0.00 3.51
227 228 4.165950 TGCCAAATCCACATATACCTGTCT 59.834 41.667 0.00 0.00 0.00 3.41
228 229 4.516698 GCCAAATCCACATATACCTGTCTG 59.483 45.833 0.00 0.00 0.00 3.51
254 255 4.578105 CCAAGGCATGAAGAAATCTCCTAC 59.422 45.833 0.00 0.00 0.00 3.18
260 261 4.478206 TGAAGAAATCTCCTACAGCTGG 57.522 45.455 19.93 0.00 0.00 4.85
261 262 2.998316 AGAAATCTCCTACAGCTGGC 57.002 50.000 19.93 0.00 0.00 4.85
271 272 2.125673 CAGCTGGCTGCATTTGGC 60.126 61.111 18.84 0.00 45.94 4.52
288 289 1.614241 GGCGAAGTTGGGCTCCTCTA 61.614 60.000 4.09 0.00 0.00 2.43
292 293 2.742589 CGAAGTTGGGCTCCTCTAAAAC 59.257 50.000 0.00 0.00 0.00 2.43
293 294 2.474410 AGTTGGGCTCCTCTAAAACG 57.526 50.000 0.00 0.00 0.00 3.60
315 316 2.735663 CAAAATATTTGCGTGGCTTGCA 59.264 40.909 0.39 0.06 41.38 4.08
336 337 1.298340 CCAATACCGCCTGTGGACA 59.702 57.895 3.27 0.00 32.54 4.02
339 340 0.179084 AATACCGCCTGTGGACATCG 60.179 55.000 3.27 0.00 0.00 3.84
348 349 2.036475 CCTGTGGACATCGGATAGAAGG 59.964 54.545 0.00 0.00 0.00 3.46
349 350 1.412710 TGTGGACATCGGATAGAAGGC 59.587 52.381 0.00 0.00 0.00 4.35
350 351 1.689273 GTGGACATCGGATAGAAGGCT 59.311 52.381 0.00 0.00 0.00 4.58
351 352 1.964223 TGGACATCGGATAGAAGGCTC 59.036 52.381 0.00 0.00 0.00 4.70
352 353 2.243810 GGACATCGGATAGAAGGCTCT 58.756 52.381 0.00 0.00 35.52 4.09
357 359 0.596083 CGGATAGAAGGCTCTGCACG 60.596 60.000 0.00 0.00 32.70 5.34
391 393 1.327690 CCCTCCGCTTGCTACACCTA 61.328 60.000 0.00 0.00 0.00 3.08
398 400 2.611971 CGCTTGCTACACCTACCTTCAA 60.612 50.000 0.00 0.00 0.00 2.69
422 424 8.900781 CAAGAGGAAGACAATGTTGATCATATT 58.099 33.333 0.00 0.00 35.48 1.28
430 432 9.671279 AGACAATGTTGATCATATTCTTACACA 57.329 29.630 0.00 0.00 35.48 3.72
452 454 4.281182 CAGTGTGTGTACCCTAGAGAAGTT 59.719 45.833 0.00 0.00 0.00 2.66
454 456 5.365895 AGTGTGTGTACCCTAGAGAAGTTTT 59.634 40.000 0.00 0.00 0.00 2.43
458 460 4.451435 GTGTACCCTAGAGAAGTTTTGCAC 59.549 45.833 0.00 0.00 0.00 4.57
474 476 0.658536 GCACACTTGCTTCGACTTGC 60.659 55.000 0.00 0.00 46.17 4.01
476 478 2.135139 CACACTTGCTTCGACTTGCTA 58.865 47.619 5.94 0.00 0.00 3.49
480 482 1.127582 CTTGCTTCGACTTGCTACAGC 59.872 52.381 5.94 0.00 42.50 4.40
482 484 0.995728 GCTTCGACTTGCTACAGCTC 59.004 55.000 2.44 0.00 42.66 4.09
486 488 1.613925 TCGACTTGCTACAGCTCAACT 59.386 47.619 2.44 0.00 42.66 3.16
489 491 3.134458 GACTTGCTACAGCTCAACTTGT 58.866 45.455 2.44 0.00 42.66 3.16
497 499 0.034059 AGCTCAACTTGTCTGGACCG 59.966 55.000 0.00 0.00 0.00 4.79
500 502 0.391597 TCAACTTGTCTGGACCGGTC 59.608 55.000 27.04 27.04 0.00 4.79
503 505 2.915659 TTGTCTGGACCGGTCGCT 60.916 61.111 27.68 0.00 0.00 4.93
504 506 3.220999 TTGTCTGGACCGGTCGCTG 62.221 63.158 27.68 21.88 0.00 5.18
506 508 3.371063 TCTGGACCGGTCGCTGAC 61.371 66.667 27.68 14.25 0.00 3.51
530 532 1.963515 ACCTTTGTTGATTGGTGGCTC 59.036 47.619 0.00 0.00 0.00 4.70
532 534 2.029649 CCTTTGTTGATTGGTGGCTCAG 60.030 50.000 0.00 0.00 0.00 3.35
536 538 2.158623 TGTTGATTGGTGGCTCAGAACT 60.159 45.455 0.00 0.00 0.00 3.01
548 550 3.118920 GGCTCAGAACTAGGAAGAGGTTC 60.119 52.174 0.00 0.00 39.43 3.62
553 555 5.244178 TCAGAACTAGGAAGAGGTTCAAGAC 59.756 44.000 0.00 0.00 40.97 3.01
554 556 5.245075 CAGAACTAGGAAGAGGTTCAAGACT 59.755 44.000 0.00 0.00 40.97 3.24
560 562 5.337788 AGGAAGAGGTTCAAGACTAGTGAT 58.662 41.667 0.00 0.00 33.93 3.06
562 564 6.605594 AGGAAGAGGTTCAAGACTAGTGATAG 59.394 42.308 0.00 0.00 33.93 2.08
565 567 3.381908 AGGTTCAAGACTAGTGATAGGCG 59.618 47.826 0.00 0.00 0.00 5.52
566 568 3.130693 GGTTCAAGACTAGTGATAGGCGT 59.869 47.826 0.00 0.00 0.00 5.68
573 575 2.293677 ACTAGTGATAGGCGTGGATTCG 59.706 50.000 0.00 0.00 0.00 3.34
575 577 1.067212 AGTGATAGGCGTGGATTCGAC 59.933 52.381 0.00 0.00 39.37 4.20
583 587 1.626654 CGTGGATTCGACACTGGTGC 61.627 60.000 0.17 0.00 36.71 5.01
590 594 2.032681 GACACTGGTGCTGGGGAC 59.967 66.667 0.17 0.00 0.00 4.46
625 629 2.299013 TGAAAGCAGAGGAACGCTAGAA 59.701 45.455 0.00 0.00 35.27 2.10
627 631 2.880963 AGCAGAGGAACGCTAGAATC 57.119 50.000 0.00 0.00 35.27 2.52
635 639 4.363999 AGGAACGCTAGAATCTTCAATCG 58.636 43.478 0.00 0.00 0.00 3.34
640 644 2.408050 CTAGAATCTTCAATCGCCCGG 58.592 52.381 0.00 0.00 0.00 5.73
643 647 2.158755 AGAATCTTCAATCGCCCGGAAT 60.159 45.455 0.73 0.00 0.00 3.01
649 653 1.001974 TCAATCGCCCGGAATAGATGG 59.998 52.381 0.73 0.00 0.00 3.51
669 673 1.999634 AACAGCTGTTGGGTCTGGCT 62.000 55.000 30.66 2.58 36.80 4.75
682 686 2.434336 GGTCTGGCTATGTGTATCACCA 59.566 50.000 0.00 0.00 32.73 4.17
695 699 3.967326 TGTATCACCAGTGAGATTAGGGG 59.033 47.826 6.63 0.00 43.61 4.79
696 700 1.879575 TCACCAGTGAGATTAGGGGG 58.120 55.000 0.00 0.00 34.14 5.40
708 712 3.731886 TAGGGGGTGGAGGGATGCC 62.732 68.421 0.00 0.00 0.00 4.40
710 714 3.813724 GGGGTGGAGGGATGCCAG 61.814 72.222 5.86 0.00 35.77 4.85
748 755 6.660094 AGGTCTAGATCGTTTGAGAAGTTAGT 59.340 38.462 0.00 0.00 0.00 2.24
749 756 7.177041 AGGTCTAGATCGTTTGAGAAGTTAGTT 59.823 37.037 0.00 0.00 0.00 2.24
829 836 6.207614 GGGTTCTTGTAAATCTTTTGCTCTCT 59.792 38.462 0.00 0.00 0.00 3.10
850 857 8.517062 TCTCTTCTATAAAAGTAAGGTACGCT 57.483 34.615 0.00 0.00 0.00 5.07
870 877 5.898630 GCTTTTGGCGTATTCTTGAAAAA 57.101 34.783 0.00 0.00 0.00 1.94
1087 1095 3.568853 CGGAGGTTCTACCACGAGATTAT 59.431 47.826 7.03 0.00 41.95 1.28
1221 1236 1.592223 CGACTGTCCCCTTGACCTC 59.408 63.158 1.55 0.00 43.78 3.85
1368 1384 5.633830 AAACCTTGTCATAGCACAATCTG 57.366 39.130 0.00 0.00 35.70 2.90
1446 1548 6.065976 TGACATGTTATGGAATTCTGTCCT 57.934 37.500 15.24 0.00 38.62 3.85
1507 1609 2.202797 CTGATCCGGTGCGTCCTG 60.203 66.667 0.00 0.00 0.00 3.86
1546 1648 7.333323 TGATATAGCTAATGGACATGGTCATG 58.667 38.462 9.19 9.19 44.15 3.07
1606 1708 4.182339 GTGAGTCCCTCGGTCTATTTTTC 58.818 47.826 0.00 0.00 32.35 2.29
1613 1715 1.127213 TCGGTCTATTTTTCGCGTTGC 59.873 47.619 5.77 0.00 0.00 4.17
1688 1791 7.880160 ATATGCTTTAGTTGCCTTGAATGTA 57.120 32.000 0.00 0.00 0.00 2.29
1756 1859 4.334552 TCCATTTGAACTGCTTGCAGATA 58.665 39.130 26.71 10.89 0.00 1.98
1780 1883 6.102663 ACAGTTATGTTGATGTCTCAGCTAC 58.897 40.000 0.00 0.00 35.63 3.58
1784 1887 4.607293 TGTTGATGTCTCAGCTACAACT 57.393 40.909 0.00 0.00 33.41 3.16
1793 1896 7.096884 TGTCTCAGCTACAACTTTATACGAT 57.903 36.000 0.00 0.00 0.00 3.73
1795 1898 8.033038 TGTCTCAGCTACAACTTTATACGATTT 58.967 33.333 0.00 0.00 0.00 2.17
1810 1913 9.594478 TTTATACGATTTGTATCTCTTTGCAGA 57.406 29.630 0.00 0.00 42.81 4.26
1875 1978 0.098200 CTGTCATGCTTGTGATGCCG 59.902 55.000 0.00 0.00 0.00 5.69
1899 2002 1.271656 AGTTGCTTGGCAGAAGAATGC 59.728 47.619 0.00 0.00 45.74 3.56
1933 2036 0.613260 TCTTCCTAACATGCCGCTGT 59.387 50.000 0.00 0.00 0.00 4.40
1985 2088 6.823689 ACTGTTGGAGGTAATATCACATTGTC 59.176 38.462 0.00 0.00 0.00 3.18
2000 2109 3.935203 ACATTGTCAAGGATCTTAGCACG 59.065 43.478 3.86 0.00 0.00 5.34
2008 2117 5.128827 TCAAGGATCTTAGCACGTAGGAAAT 59.871 40.000 0.00 0.00 0.00 2.17
2061 2170 2.884012 CAGCCCAACACTACACAATTGA 59.116 45.455 13.59 0.00 0.00 2.57
2107 2222 6.922247 ATACTTCATCAACATCTTGAGCAG 57.078 37.500 0.00 0.00 39.83 4.24
2119 2234 8.833493 CAACATCTTGAGCAGTTATGAATATCA 58.167 33.333 0.00 0.00 0.00 2.15
2120 2235 8.969260 ACATCTTGAGCAGTTATGAATATCAA 57.031 30.769 0.00 0.00 0.00 2.57
2121 2236 9.399797 ACATCTTGAGCAGTTATGAATATCAAA 57.600 29.630 0.00 0.00 0.00 2.69
2122 2237 9.661187 CATCTTGAGCAGTTATGAATATCAAAC 57.339 33.333 0.00 0.00 0.00 2.93
2124 2239 9.399797 TCTTGAGCAGTTATGAATATCAAACAT 57.600 29.630 0.00 0.00 0.00 2.71
2163 2281 5.643379 TTTTTGAACTGCTGACAACTTCT 57.357 34.783 0.00 0.00 0.00 2.85
2169 2287 1.345741 CTGCTGACAACTTCTGGGAGA 59.654 52.381 0.00 0.00 0.00 3.71
2171 2289 1.937108 GCTGACAACTTCTGGGAGACG 60.937 57.143 0.00 0.00 0.00 4.18
2257 2375 9.378551 GTGTGTGTCATATTGTATTAGAAGGAA 57.621 33.333 0.00 0.00 0.00 3.36
2261 2379 8.276325 GTGTCATATTGTATTAGAAGGAAAGCG 58.724 37.037 0.00 0.00 0.00 4.68
2264 2382 3.620427 TGTATTAGAAGGAAAGCGCCA 57.380 42.857 2.29 0.00 0.00 5.69
2296 2414 5.163794 ACAAAGTACAACTCAACGAAACCAG 60.164 40.000 0.00 0.00 0.00 4.00
2303 2421 4.073293 ACTCAACGAAACCAGAGACATT 57.927 40.909 0.00 0.00 32.59 2.71
2305 2423 3.804036 TCAACGAAACCAGAGACATTGT 58.196 40.909 0.00 0.00 0.00 2.71
2319 2437 3.494626 AGACATTGTGCAAGTACAACTCG 59.505 43.478 5.88 1.59 42.74 4.18
2339 2457 5.182380 ACTCGAGAAAACCAAAGACAAACAA 59.818 36.000 21.68 0.00 0.00 2.83
2365 2483 2.920490 TCACGTTTGTCTTTTTGCTTGC 59.080 40.909 0.00 0.00 0.00 4.01
2409 2528 8.788325 AAACAGTGTATGTATCCTTAAAGACC 57.212 34.615 0.00 0.00 43.00 3.85
2410 2529 7.735326 ACAGTGTATGTATCCTTAAAGACCT 57.265 36.000 0.00 0.00 41.60 3.85
2479 2598 8.099537 CCTATATGACTATTTCTGCCAATGACT 58.900 37.037 0.00 0.00 0.00 3.41
2495 2614 5.693104 CCAATGACTGTTTCTTTTGTGATGG 59.307 40.000 0.00 0.00 0.00 3.51
2523 2642 5.885230 TTCCATCATGCTCTTGTTTGTAG 57.115 39.130 0.00 0.00 0.00 2.74
2554 2673 9.751542 AATGACATATGCAGTAGTTACTACTTC 57.248 33.333 21.03 17.20 43.82 3.01
2555 2674 8.288689 TGACATATGCAGTAGTTACTACTTCA 57.711 34.615 22.62 22.62 43.82 3.02
2565 2684 9.938670 CAGTAGTTACTACTTCATACTGCTTAG 57.061 37.037 21.03 3.28 43.82 2.18
2591 2710 6.449830 ACCCTTGGTTATTCTGTAAGTTCT 57.550 37.500 0.00 0.00 27.29 3.01
2623 2742 1.277557 GTCTCTCTGGAGGTGCAACAT 59.722 52.381 3.64 0.00 39.98 2.71
2656 2775 8.360390 ACTTTAGATTGAACAATTCAGAAACCC 58.640 33.333 1.56 0.00 41.38 4.11
2659 2778 5.835280 AGATTGAACAATTCAGAAACCCTGT 59.165 36.000 1.56 0.00 43.38 4.00
2717 2836 3.777465 AAGCTTAACGATCAGCTACGA 57.223 42.857 0.00 0.00 46.01 3.43
2753 2872 4.528206 TCACTGAGAAGACAAGCCAAGATA 59.472 41.667 0.00 0.00 0.00 1.98
2759 2878 5.679601 AGAAGACAAGCCAAGATAGAATCC 58.320 41.667 0.00 0.00 0.00 3.01
3023 3142 8.617809 GGCATGAATTTCATTTATCATTTGCTT 58.382 29.630 9.19 0.00 34.28 3.91
3045 3164 5.029650 TGTACGCACATTTGAAACTGATC 57.970 39.130 0.00 0.00 0.00 2.92
3060 3179 1.926510 CTGATCGTGCTTTGATGCGTA 59.073 47.619 0.00 0.00 35.36 4.42
3115 3234 1.341285 CCCTCCTGAACATGCCAATGA 60.341 52.381 0.00 0.00 37.24 2.57
3221 3340 6.403092 GCATTGTGGTGCCCATTTTTATTTAC 60.403 38.462 0.00 0.00 39.18 2.01
3356 3476 3.710677 CCAAGATGACTGGAGAGGATTCT 59.289 47.826 0.00 0.00 36.01 2.40
3470 3590 5.535783 TGCAAGATTGGAGAATGACTGAAAA 59.464 36.000 0.00 0.00 0.00 2.29
3483 3685 3.108144 GACTGAAAATGTGTGTGTGTGC 58.892 45.455 0.00 0.00 0.00 4.57
3485 3687 0.845768 GAAAATGTGTGTGTGTGCGC 59.154 50.000 0.00 0.00 0.00 6.09
3487 3689 3.805385 AATGTGTGTGTGTGCGCGC 62.805 57.895 27.26 27.26 36.27 6.86
3523 3725 3.851098 TGCAAACACCGCTAAACTTTTT 58.149 36.364 0.00 0.00 0.00 1.94
3547 3749 8.932945 TTGTTCTTCACTAGTCATATGATGTC 57.067 34.615 9.02 0.00 0.00 3.06
3793 4257 6.945435 TCCTTTGCCACTTCTCATATTTGTAA 59.055 34.615 0.00 0.00 0.00 2.41
3794 4258 7.615365 TCCTTTGCCACTTCTCATATTTGTAAT 59.385 33.333 0.00 0.00 0.00 1.89
3891 4500 3.120792 GTCGAGTCACAAGTGTAAGCAA 58.879 45.455 0.00 0.00 0.00 3.91
3942 4556 4.530710 TCTCAACCGTAAGTGCTAACAT 57.469 40.909 0.00 0.00 0.00 2.71
3983 4599 5.386060 TCAGATATCCGTAGTGATGTCCTT 58.614 41.667 0.00 0.00 34.46 3.36
3984 4600 5.241728 TCAGATATCCGTAGTGATGTCCTTG 59.758 44.000 0.00 0.00 34.46 3.61
3985 4601 2.604046 ATCCGTAGTGATGTCCTTGC 57.396 50.000 0.00 0.00 0.00 4.01
3986 4602 1.262417 TCCGTAGTGATGTCCTTGCA 58.738 50.000 0.00 0.00 0.00 4.08
3987 4603 1.204704 TCCGTAGTGATGTCCTTGCAG 59.795 52.381 0.00 0.00 0.00 4.41
3988 4604 1.066858 CCGTAGTGATGTCCTTGCAGT 60.067 52.381 0.00 0.00 0.00 4.40
3989 4605 1.995484 CGTAGTGATGTCCTTGCAGTG 59.005 52.381 0.00 0.00 0.00 3.66
3990 4606 2.610479 CGTAGTGATGTCCTTGCAGTGT 60.610 50.000 0.00 0.00 0.00 3.55
3991 4607 2.175878 AGTGATGTCCTTGCAGTGTC 57.824 50.000 0.00 0.00 0.00 3.67
3992 4608 1.160137 GTGATGTCCTTGCAGTGTCC 58.840 55.000 0.00 0.00 0.00 4.02
3993 4609 1.059098 TGATGTCCTTGCAGTGTCCT 58.941 50.000 0.00 0.00 0.00 3.85
4005 4621 3.638627 TGCAGTGTCCTCATAGTATCAGG 59.361 47.826 0.00 0.00 0.00 3.86
4089 4725 5.187967 AGTGGTTCTCTTCGTCCAAATCTAT 59.812 40.000 0.00 0.00 0.00 1.98
4129 4766 0.031721 GCTTGATGGCATTGGCTAGC 59.968 55.000 6.04 6.04 40.87 3.42
4158 4795 6.371809 TGTTGAAGTAGGTGACATCAAAAC 57.628 37.500 0.00 0.00 44.87 2.43
4173 4810 5.518812 CATCAAAACCAAGATGTTTGACGA 58.481 37.500 0.51 0.00 38.41 4.20
4232 4875 7.175119 GGCTAAGAGGGAATATAATTTCGCTTT 59.825 37.037 6.99 0.39 45.61 3.51
4256 4899 6.425735 TGAATTCTTCATGATGGTGGTATGT 58.574 36.000 7.05 0.00 34.08 2.29
4261 4904 6.484288 TCTTCATGATGGTGGTATGTTCTTT 58.516 36.000 8.60 0.00 0.00 2.52
4406 5059 1.748244 GCTGGATTGCACATGGCTCTA 60.748 52.381 0.00 0.00 45.15 2.43
4464 5117 5.165911 CAAAGATGCACTATTGTAGGCTG 57.834 43.478 0.00 0.00 0.00 4.85
4465 5118 3.482156 AGATGCACTATTGTAGGCTGG 57.518 47.619 0.00 0.00 0.00 4.85
4466 5119 3.041211 AGATGCACTATTGTAGGCTGGA 58.959 45.455 0.00 0.00 0.00 3.86
4467 5120 3.455910 AGATGCACTATTGTAGGCTGGAA 59.544 43.478 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.584563 CGCTTCTAGAAGATGATAAAGTAGGC 59.415 42.308 32.16 13.66 40.79 3.93
22 23 4.794278 TCACATTTAGGTGTCGCTTCTA 57.206 40.909 0.00 0.00 39.76 2.10
36 37 7.938563 TTTACGCAAATAAGCTTTCACATTT 57.061 28.000 3.20 1.23 0.00 2.32
66 67 7.067496 TGGAATAGATTGAATCCTCTGTACC 57.933 40.000 0.75 0.00 33.02 3.34
71 72 8.865420 CATGAATGGAATAGATTGAATCCTCT 57.135 34.615 0.75 0.00 33.02 3.69
88 89 9.972038 CATCAACTGGATCAAAGCCATGAATGG 62.972 44.444 4.87 4.87 41.95 3.16
89 90 4.158949 TCAACTGGATCAAAGCCATGAATG 59.841 41.667 0.00 0.00 34.33 2.67
90 91 4.346730 TCAACTGGATCAAAGCCATGAAT 58.653 39.130 0.00 0.00 34.33 2.57
91 92 3.765381 TCAACTGGATCAAAGCCATGAA 58.235 40.909 0.00 0.00 34.33 2.57
92 93 3.438216 TCAACTGGATCAAAGCCATGA 57.562 42.857 0.00 0.00 34.33 3.07
93 94 3.737047 GCATCAACTGGATCAAAGCCATG 60.737 47.826 0.00 0.00 34.33 3.66
94 95 2.429610 GCATCAACTGGATCAAAGCCAT 59.570 45.455 0.00 0.00 34.33 4.40
95 96 1.820519 GCATCAACTGGATCAAAGCCA 59.179 47.619 0.00 0.00 32.57 4.75
96 97 1.820519 TGCATCAACTGGATCAAAGCC 59.179 47.619 0.00 0.00 32.57 4.35
97 98 2.730090 CGTGCATCAACTGGATCAAAGC 60.730 50.000 0.00 0.00 32.57 3.51
98 99 2.485426 ACGTGCATCAACTGGATCAAAG 59.515 45.455 0.00 0.00 32.57 2.77
99 100 2.503331 ACGTGCATCAACTGGATCAAA 58.497 42.857 0.00 0.00 32.57 2.69
100 101 2.183478 ACGTGCATCAACTGGATCAA 57.817 45.000 0.00 0.00 32.57 2.57
101 102 3.326836 TTACGTGCATCAACTGGATCA 57.673 42.857 0.00 0.00 32.57 2.92
102 103 4.808895 TGTATTACGTGCATCAACTGGATC 59.191 41.667 0.00 0.00 32.57 3.36
103 104 4.765273 TGTATTACGTGCATCAACTGGAT 58.235 39.130 0.00 0.00 36.39 3.41
104 105 4.195225 TGTATTACGTGCATCAACTGGA 57.805 40.909 0.00 0.00 0.00 3.86
105 106 4.836455 CATGTATTACGTGCATCAACTGG 58.164 43.478 0.00 0.00 30.03 4.00
115 116 7.741652 CACTATAGCAATTGCATGTATTACGTG 59.258 37.037 30.89 19.93 45.16 4.49
116 117 7.655732 TCACTATAGCAATTGCATGTATTACGT 59.344 33.333 30.89 14.37 45.16 3.57
117 118 8.017587 TCACTATAGCAATTGCATGTATTACG 57.982 34.615 30.89 13.86 45.16 3.18
118 119 9.599322 GTTCACTATAGCAATTGCATGTATTAC 57.401 33.333 30.89 15.57 45.16 1.89
119 120 9.336171 TGTTCACTATAGCAATTGCATGTATTA 57.664 29.630 30.89 14.45 45.16 0.98
120 121 8.224389 TGTTCACTATAGCAATTGCATGTATT 57.776 30.769 30.89 12.66 45.16 1.89
121 122 7.716560 TCTGTTCACTATAGCAATTGCATGTAT 59.283 33.333 30.89 21.12 45.16 2.29
122 123 7.047271 TCTGTTCACTATAGCAATTGCATGTA 58.953 34.615 30.89 15.89 45.16 2.29
123 124 5.882000 TCTGTTCACTATAGCAATTGCATGT 59.118 36.000 30.89 19.43 45.16 3.21
124 125 6.259387 TCTCTGTTCACTATAGCAATTGCATG 59.741 38.462 30.89 19.34 45.16 4.06
125 126 6.351711 TCTCTGTTCACTATAGCAATTGCAT 58.648 36.000 30.89 22.44 45.16 3.96
126 127 5.733676 TCTCTGTTCACTATAGCAATTGCA 58.266 37.500 30.89 17.58 45.16 4.08
127 128 6.259608 ACATCTCTGTTCACTATAGCAATTGC 59.740 38.462 23.05 23.05 34.66 3.56
128 129 7.783090 ACATCTCTGTTCACTATAGCAATTG 57.217 36.000 0.00 0.00 28.70 2.32
129 130 8.043113 TCAACATCTCTGTTCACTATAGCAATT 58.957 33.333 0.00 0.00 43.76 2.32
130 131 7.559486 TCAACATCTCTGTTCACTATAGCAAT 58.441 34.615 0.00 0.00 43.76 3.56
131 132 6.935167 TCAACATCTCTGTTCACTATAGCAA 58.065 36.000 0.00 0.00 43.76 3.91
132 133 6.406288 CCTCAACATCTCTGTTCACTATAGCA 60.406 42.308 0.00 0.00 43.76 3.49
133 134 5.982516 CCTCAACATCTCTGTTCACTATAGC 59.017 44.000 0.00 0.00 43.76 2.97
134 135 5.982516 GCCTCAACATCTCTGTTCACTATAG 59.017 44.000 0.00 0.00 43.76 1.31
135 136 5.658634 AGCCTCAACATCTCTGTTCACTATA 59.341 40.000 0.00 0.00 43.76 1.31
136 137 4.469227 AGCCTCAACATCTCTGTTCACTAT 59.531 41.667 0.00 0.00 43.76 2.12
137 138 3.834813 AGCCTCAACATCTCTGTTCACTA 59.165 43.478 0.00 0.00 43.76 2.74
138 139 2.636893 AGCCTCAACATCTCTGTTCACT 59.363 45.455 0.00 0.00 43.76 3.41
139 140 2.740981 CAGCCTCAACATCTCTGTTCAC 59.259 50.000 0.00 0.00 43.76 3.18
140 141 2.634453 TCAGCCTCAACATCTCTGTTCA 59.366 45.455 0.00 0.00 43.76 3.18
141 142 3.325293 TCAGCCTCAACATCTCTGTTC 57.675 47.619 0.00 0.00 43.76 3.18
142 143 3.326006 TCTTCAGCCTCAACATCTCTGTT 59.674 43.478 0.00 0.00 46.54 3.16
143 144 2.902486 TCTTCAGCCTCAACATCTCTGT 59.098 45.455 0.00 0.00 37.12 3.41
144 145 3.260740 GTCTTCAGCCTCAACATCTCTG 58.739 50.000 0.00 0.00 0.00 3.35
145 146 2.094286 CGTCTTCAGCCTCAACATCTCT 60.094 50.000 0.00 0.00 0.00 3.10
146 147 2.266554 CGTCTTCAGCCTCAACATCTC 58.733 52.381 0.00 0.00 0.00 2.75
147 148 1.620819 ACGTCTTCAGCCTCAACATCT 59.379 47.619 0.00 0.00 0.00 2.90
148 149 2.086054 ACGTCTTCAGCCTCAACATC 57.914 50.000 0.00 0.00 0.00 3.06
149 150 2.550830 AACGTCTTCAGCCTCAACAT 57.449 45.000 0.00 0.00 0.00 2.71
150 151 2.325583 AAACGTCTTCAGCCTCAACA 57.674 45.000 0.00 0.00 0.00 3.33
151 152 2.612212 TGAAAACGTCTTCAGCCTCAAC 59.388 45.455 0.00 0.00 31.67 3.18
152 153 2.612212 GTGAAAACGTCTTCAGCCTCAA 59.388 45.455 4.14 0.00 36.01 3.02
153 154 2.158957 AGTGAAAACGTCTTCAGCCTCA 60.159 45.455 4.14 0.00 36.01 3.86
154 155 2.484889 AGTGAAAACGTCTTCAGCCTC 58.515 47.619 4.14 0.00 36.01 4.70
155 156 2.614057 CAAGTGAAAACGTCTTCAGCCT 59.386 45.455 4.14 0.00 36.01 4.58
156 157 2.287009 CCAAGTGAAAACGTCTTCAGCC 60.287 50.000 4.14 0.00 36.01 4.85
157 158 2.854805 GCCAAGTGAAAACGTCTTCAGC 60.855 50.000 4.14 1.05 36.01 4.26
158 159 2.287009 GGCCAAGTGAAAACGTCTTCAG 60.287 50.000 4.14 0.00 36.01 3.02
159 160 1.673920 GGCCAAGTGAAAACGTCTTCA 59.326 47.619 0.00 0.00 32.89 3.02
160 161 1.001706 GGGCCAAGTGAAAACGTCTTC 60.002 52.381 4.39 0.00 0.00 2.87
161 162 1.029681 GGGCCAAGTGAAAACGTCTT 58.970 50.000 4.39 0.00 0.00 3.01
162 163 1.164041 CGGGCCAAGTGAAAACGTCT 61.164 55.000 4.39 0.00 0.00 4.18
163 164 1.281656 CGGGCCAAGTGAAAACGTC 59.718 57.895 4.39 0.00 0.00 4.34
164 165 2.841160 GCGGGCCAAGTGAAAACGT 61.841 57.895 4.39 0.00 0.00 3.99
165 166 2.050442 GCGGGCCAAGTGAAAACG 60.050 61.111 4.39 0.00 0.00 3.60
166 167 0.388520 GATGCGGGCCAAGTGAAAAC 60.389 55.000 4.39 0.00 0.00 2.43
167 168 1.531739 GGATGCGGGCCAAGTGAAAA 61.532 55.000 4.39 0.00 0.00 2.29
168 169 1.976474 GGATGCGGGCCAAGTGAAA 60.976 57.895 4.39 0.00 0.00 2.69
169 170 2.361104 GGATGCGGGCCAAGTGAA 60.361 61.111 4.39 0.00 0.00 3.18
170 171 2.891941 GATGGATGCGGGCCAAGTGA 62.892 60.000 4.39 0.00 39.21 3.41
171 172 2.440796 ATGGATGCGGGCCAAGTG 60.441 61.111 4.39 0.00 39.21 3.16
172 173 2.124151 GATGGATGCGGGCCAAGT 60.124 61.111 4.39 0.00 39.21 3.16
173 174 2.124193 TGATGGATGCGGGCCAAG 60.124 61.111 4.39 0.00 39.21 3.61
174 175 2.440065 GTGATGGATGCGGGCCAA 60.440 61.111 4.39 0.00 39.21 4.52
175 176 4.504596 GGTGATGGATGCGGGCCA 62.505 66.667 4.39 0.00 40.24 5.36
177 178 4.545706 TCGGTGATGGATGCGGGC 62.546 66.667 0.00 0.00 0.00 6.13
178 179 2.280389 CTCGGTGATGGATGCGGG 60.280 66.667 0.00 0.00 0.00 6.13
179 180 1.300465 CTCTCGGTGATGGATGCGG 60.300 63.158 0.00 0.00 0.00 5.69
180 181 0.179100 AACTCTCGGTGATGGATGCG 60.179 55.000 0.00 0.00 0.00 4.73
181 182 2.101582 AGTAACTCTCGGTGATGGATGC 59.898 50.000 0.00 0.00 0.00 3.91
182 183 3.634448 AGAGTAACTCTCGGTGATGGATG 59.366 47.826 0.00 0.00 46.86 3.51
183 184 3.634448 CAGAGTAACTCTCGGTGATGGAT 59.366 47.826 0.00 0.00 46.86 3.41
184 185 3.017442 CAGAGTAACTCTCGGTGATGGA 58.983 50.000 0.00 0.00 46.86 3.41
185 186 2.480416 GCAGAGTAACTCTCGGTGATGG 60.480 54.545 0.00 0.00 46.86 3.51
186 187 2.480416 GGCAGAGTAACTCTCGGTGATG 60.480 54.545 0.00 0.00 46.86 3.07
187 188 1.751924 GGCAGAGTAACTCTCGGTGAT 59.248 52.381 0.00 0.00 46.86 3.06
188 189 1.174783 GGCAGAGTAACTCTCGGTGA 58.825 55.000 0.00 0.00 46.86 4.02
189 190 0.888619 TGGCAGAGTAACTCTCGGTG 59.111 55.000 0.00 0.00 46.86 4.94
190 191 1.629043 TTGGCAGAGTAACTCTCGGT 58.371 50.000 0.00 0.00 46.86 4.69
191 192 2.743636 TTTGGCAGAGTAACTCTCGG 57.256 50.000 0.00 0.00 46.86 4.63
192 193 3.190874 GGATTTGGCAGAGTAACTCTCG 58.809 50.000 0.00 0.00 46.86 4.04
193 194 3.935828 GTGGATTTGGCAGAGTAACTCTC 59.064 47.826 0.00 0.00 38.99 3.20
194 195 3.327757 TGTGGATTTGGCAGAGTAACTCT 59.672 43.478 0.00 0.00 42.11 3.24
195 196 3.674997 TGTGGATTTGGCAGAGTAACTC 58.325 45.455 0.00 0.00 0.00 3.01
196 197 3.788227 TGTGGATTTGGCAGAGTAACT 57.212 42.857 0.00 0.00 0.00 2.24
197 198 6.204882 GGTATATGTGGATTTGGCAGAGTAAC 59.795 42.308 0.00 0.00 0.00 2.50
198 199 6.101150 AGGTATATGTGGATTTGGCAGAGTAA 59.899 38.462 0.00 0.00 0.00 2.24
199 200 5.606749 AGGTATATGTGGATTTGGCAGAGTA 59.393 40.000 0.00 0.00 0.00 2.59
200 201 4.413520 AGGTATATGTGGATTTGGCAGAGT 59.586 41.667 0.00 0.00 0.00 3.24
201 202 4.758674 CAGGTATATGTGGATTTGGCAGAG 59.241 45.833 0.00 0.00 0.00 3.35
202 203 4.165950 ACAGGTATATGTGGATTTGGCAGA 59.834 41.667 0.00 0.00 30.46 4.26
203 204 4.464008 ACAGGTATATGTGGATTTGGCAG 58.536 43.478 0.00 0.00 30.46 4.85
204 205 4.165950 AGACAGGTATATGTGGATTTGGCA 59.834 41.667 0.00 0.00 32.25 4.92
205 206 4.516698 CAGACAGGTATATGTGGATTTGGC 59.483 45.833 0.00 0.00 32.25 4.52
206 207 5.528690 CACAGACAGGTATATGTGGATTTGG 59.471 44.000 0.00 0.00 39.45 3.28
207 208 5.008019 GCACAGACAGGTATATGTGGATTTG 59.992 44.000 6.33 0.00 42.56 2.32
208 209 5.126067 GCACAGACAGGTATATGTGGATTT 58.874 41.667 6.33 0.00 42.56 2.17
209 210 4.444876 GGCACAGACAGGTATATGTGGATT 60.445 45.833 6.33 0.00 42.56 3.01
210 211 3.071602 GGCACAGACAGGTATATGTGGAT 59.928 47.826 6.33 0.00 42.56 3.41
211 212 2.434336 GGCACAGACAGGTATATGTGGA 59.566 50.000 6.33 0.00 42.56 4.02
212 213 2.170397 TGGCACAGACAGGTATATGTGG 59.830 50.000 6.33 0.00 42.56 4.17
213 214 3.541996 TGGCACAGACAGGTATATGTG 57.458 47.619 0.00 0.00 44.58 3.21
214 215 3.118261 CCTTGGCACAGACAGGTATATGT 60.118 47.826 0.00 0.00 42.39 2.29
215 216 3.470709 CCTTGGCACAGACAGGTATATG 58.529 50.000 0.00 0.00 42.39 1.78
216 217 2.158755 GCCTTGGCACAGACAGGTATAT 60.159 50.000 6.79 0.00 42.39 0.86
217 218 1.209504 GCCTTGGCACAGACAGGTATA 59.790 52.381 6.79 0.00 42.39 1.47
218 219 0.035056 GCCTTGGCACAGACAGGTAT 60.035 55.000 6.79 0.00 42.39 2.73
219 220 1.374947 GCCTTGGCACAGACAGGTA 59.625 57.895 6.79 0.00 42.39 3.08
220 221 2.072874 ATGCCTTGGCACAGACAGGT 62.073 55.000 17.22 0.00 42.39 4.00
221 222 1.303888 ATGCCTTGGCACAGACAGG 60.304 57.895 17.22 0.00 42.39 4.00
222 223 0.607217 TCATGCCTTGGCACAGACAG 60.607 55.000 17.22 3.52 42.39 3.51
223 224 0.178995 TTCATGCCTTGGCACAGACA 60.179 50.000 17.22 6.60 42.39 3.41
224 225 0.524862 CTTCATGCCTTGGCACAGAC 59.475 55.000 17.22 0.00 42.39 3.51
225 226 0.401356 TCTTCATGCCTTGGCACAGA 59.599 50.000 17.22 14.52 42.39 3.41
226 227 1.250328 TTCTTCATGCCTTGGCACAG 58.750 50.000 17.22 12.44 42.39 3.66
227 228 1.702182 TTTCTTCATGCCTTGGCACA 58.298 45.000 17.22 3.72 0.00 4.57
228 229 2.494870 AGATTTCTTCATGCCTTGGCAC 59.505 45.455 17.22 0.83 0.00 5.01
241 242 2.843113 AGCCAGCTGTAGGAGATTTCTT 59.157 45.455 13.81 0.00 0.00 2.52
242 243 2.170187 CAGCCAGCTGTAGGAGATTTCT 59.830 50.000 13.81 0.00 39.10 2.52
245 246 0.179936 GCAGCCAGCTGTAGGAGATT 59.820 55.000 20.11 0.00 45.24 2.40
249 250 0.329261 AAATGCAGCCAGCTGTAGGA 59.671 50.000 20.11 3.37 45.24 2.94
254 255 2.125673 GCCAAATGCAGCCAGCTG 60.126 61.111 15.34 15.34 45.94 4.24
260 261 1.010419 CCAACTTCGCCAAATGCAGC 61.010 55.000 0.00 0.00 41.33 5.25
261 262 0.388907 CCCAACTTCGCCAAATGCAG 60.389 55.000 0.00 0.00 41.33 4.41
267 268 2.282180 GGAGCCCAACTTCGCCAA 60.282 61.111 0.00 0.00 0.00 4.52
271 272 2.742589 GTTTTAGAGGAGCCCAACTTCG 59.257 50.000 0.00 0.00 0.00 3.79
273 274 2.779506 CGTTTTAGAGGAGCCCAACTT 58.220 47.619 0.00 0.00 0.00 2.66
275 276 0.803117 GCGTTTTAGAGGAGCCCAAC 59.197 55.000 0.00 0.00 0.00 3.77
276 277 0.398696 TGCGTTTTAGAGGAGCCCAA 59.601 50.000 0.00 0.00 0.00 4.12
293 294 2.474361 GCAAGCCACGCAAATATTTTGC 60.474 45.455 13.54 13.54 41.71 3.68
312 313 3.727258 AGGCGGTATTGGGCTGCA 61.727 61.111 0.50 0.00 39.82 4.41
315 316 2.272146 CACAGGCGGTATTGGGCT 59.728 61.111 0.00 0.00 41.50 5.19
318 319 0.107214 ATGTCCACAGGCGGTATTGG 60.107 55.000 0.00 0.00 0.00 3.16
336 337 1.342819 GTGCAGAGCCTTCTATCCGAT 59.657 52.381 0.00 0.00 30.73 4.18
339 340 0.249657 CCGTGCAGAGCCTTCTATCC 60.250 60.000 0.00 0.00 30.73 2.59
357 359 1.680249 GGAGGGTGAGTCTTGCAATCC 60.680 57.143 0.00 0.00 0.00 3.01
368 370 1.153549 GTAGCAAGCGGAGGGTGAG 60.154 63.158 0.00 0.00 0.00 3.51
371 373 2.663196 GTGTAGCAAGCGGAGGGT 59.337 61.111 0.00 0.00 0.00 4.34
398 400 8.492782 AGAATATGATCAACATTGTCTTCCTCT 58.507 33.333 0.00 0.00 40.07 3.69
407 409 9.712359 CACTGTGTAAGAATATGATCAACATTG 57.288 33.333 0.00 0.00 40.07 2.82
413 415 7.832503 CACACACTGTGTAAGAATATGATCA 57.167 36.000 14.53 0.00 45.65 2.92
430 432 4.115398 ACTTCTCTAGGGTACACACACT 57.885 45.455 0.00 0.00 42.59 3.55
441 443 4.555511 GCAAGTGTGCAAAACTTCTCTAGG 60.556 45.833 12.02 3.45 41.65 3.02
443 445 4.199310 AGCAAGTGTGCAAAACTTCTCTA 58.801 39.130 12.02 0.00 41.65 2.43
458 460 2.135139 TGTAGCAAGTCGAAGCAAGTG 58.865 47.619 8.24 0.00 0.00 3.16
474 476 3.321497 GTCCAGACAAGTTGAGCTGTAG 58.679 50.000 20.74 11.85 0.00 2.74
476 478 1.202698 GGTCCAGACAAGTTGAGCTGT 60.203 52.381 20.74 0.00 0.00 4.40
480 482 0.393077 ACCGGTCCAGACAAGTTGAG 59.607 55.000 10.54 0.00 0.00 3.02
482 484 0.944311 CGACCGGTCCAGACAAGTTG 60.944 60.000 28.52 6.71 0.00 3.16
486 488 2.915659 AGCGACCGGTCCAGACAA 60.916 61.111 28.52 0.00 0.00 3.18
489 491 3.371063 GTCAGCGACCGGTCCAGA 61.371 66.667 28.52 19.79 0.00 3.86
500 502 2.333926 TCAACAAAGGTATCGTCAGCG 58.666 47.619 0.00 0.00 39.92 5.18
503 505 4.454161 CACCAATCAACAAAGGTATCGTCA 59.546 41.667 0.00 0.00 32.01 4.35
504 506 4.142687 CCACCAATCAACAAAGGTATCGTC 60.143 45.833 0.00 0.00 32.01 4.20
506 508 3.427503 GCCACCAATCAACAAAGGTATCG 60.428 47.826 0.00 0.00 32.01 2.92
510 512 1.963515 GAGCCACCAATCAACAAAGGT 59.036 47.619 0.00 0.00 33.91 3.50
530 532 5.245075 AGTCTTGAACCTCTTCCTAGTTCTG 59.755 44.000 0.00 0.00 40.42 3.02
532 534 5.731957 AGTCTTGAACCTCTTCCTAGTTC 57.268 43.478 0.00 0.00 40.23 3.01
536 538 5.888901 TCACTAGTCTTGAACCTCTTCCTA 58.111 41.667 0.00 0.00 0.00 2.94
548 550 2.688446 TCCACGCCTATCACTAGTCTTG 59.312 50.000 0.00 0.00 0.00 3.02
553 555 2.552743 TCGAATCCACGCCTATCACTAG 59.447 50.000 0.00 0.00 0.00 2.57
554 556 2.292569 GTCGAATCCACGCCTATCACTA 59.707 50.000 0.00 0.00 0.00 2.74
560 562 0.172578 CAGTGTCGAATCCACGCCTA 59.827 55.000 0.00 0.00 37.88 3.93
562 564 2.100631 CCAGTGTCGAATCCACGCC 61.101 63.158 0.00 0.00 37.88 5.68
565 567 0.320771 AGCACCAGTGTCGAATCCAC 60.321 55.000 0.00 0.00 0.00 4.02
566 568 0.320683 CAGCACCAGTGTCGAATCCA 60.321 55.000 0.00 0.00 0.00 3.41
573 575 2.032681 GTCCCCAGCACCAGTGTC 59.967 66.667 0.00 0.00 0.00 3.67
575 577 4.704833 CCGTCCCCAGCACCAGTG 62.705 72.222 0.00 0.00 0.00 3.66
590 594 0.526096 CTTTCAAATCGCCCATGCCG 60.526 55.000 0.00 0.00 0.00 5.69
601 605 2.508526 AGCGTTCCTCTGCTTTCAAAT 58.491 42.857 0.00 0.00 38.57 2.32
603 607 2.299013 TCTAGCGTTCCTCTGCTTTCAA 59.701 45.455 0.00 0.00 42.48 2.69
606 610 3.196685 AGATTCTAGCGTTCCTCTGCTTT 59.803 43.478 0.00 0.00 42.48 3.51
625 629 2.632996 TCTATTCCGGGCGATTGAAGAT 59.367 45.455 0.00 0.00 0.00 2.40
627 631 2.526304 TCTATTCCGGGCGATTGAAG 57.474 50.000 0.00 0.00 0.00 3.02
635 639 1.884235 CTGTTCCATCTATTCCGGGC 58.116 55.000 0.00 0.00 0.00 6.13
640 644 3.629398 CCCAACAGCTGTTCCATCTATTC 59.371 47.826 28.97 0.00 35.83 1.75
643 647 1.985159 ACCCAACAGCTGTTCCATCTA 59.015 47.619 28.97 0.00 35.83 1.98
649 653 1.518903 GCCAGACCCAACAGCTGTTC 61.519 60.000 28.97 17.95 35.83 3.18
656 660 1.064003 ACACATAGCCAGACCCAACA 58.936 50.000 0.00 0.00 0.00 3.33
657 661 3.118408 TGATACACATAGCCAGACCCAAC 60.118 47.826 0.00 0.00 0.00 3.77
662 666 3.133003 ACTGGTGATACACATAGCCAGAC 59.867 47.826 14.35 0.00 44.40 3.51
663 667 3.132824 CACTGGTGATACACATAGCCAGA 59.867 47.826 14.35 0.00 44.40 3.86
669 673 6.267699 CCCTAATCTCACTGGTGATACACATA 59.732 42.308 3.80 0.00 39.13 2.29
682 686 1.344496 CCTCCACCCCCTAATCTCACT 60.344 57.143 0.00 0.00 0.00 3.41
695 699 2.750657 CCTCTGGCATCCCTCCACC 61.751 68.421 0.00 0.00 0.00 4.61
696 700 1.997874 ACCTCTGGCATCCCTCCAC 60.998 63.158 0.00 0.00 0.00 4.02
708 712 1.187087 GACCTCCTACACCACCTCTG 58.813 60.000 0.00 0.00 0.00 3.35
710 714 2.241685 TCTAGACCTCCTACACCACCTC 59.758 54.545 0.00 0.00 0.00 3.85
748 755 3.968649 TCCACACACCCACTAGTCTAAAA 59.031 43.478 0.00 0.00 0.00 1.52
749 756 3.576982 CTCCACACACCCACTAGTCTAAA 59.423 47.826 0.00 0.00 0.00 1.85
829 836 8.938906 CCAAAAGCGTACCTTACTTTTATAGAA 58.061 33.333 9.09 0.00 40.63 2.10
902 909 5.163703 TGTTATTTTGCACATATGACCCGAC 60.164 40.000 10.38 0.00 0.00 4.79
910 917 5.678616 GCCTCGGTTGTTATTTTGCACATAT 60.679 40.000 0.00 0.00 0.00 1.78
1087 1095 2.514592 CTCGGGGAGTACGGCGTA 60.515 66.667 16.97 16.97 0.00 4.42
1221 1236 2.621998 CTGGAAAGCATTAGAGGCATGG 59.378 50.000 0.00 0.00 0.00 3.66
1280 1295 5.991328 ATTATGACAAGCATACCGAAGTG 57.009 39.130 0.00 0.00 39.14 3.16
1368 1384 4.992381 AAGAAACAGTCGATGCAGTAAC 57.008 40.909 0.00 0.00 0.00 2.50
1446 1548 2.221169 ACAAGAAACATTCGCTCTGCA 58.779 42.857 0.00 0.00 34.02 4.41
1507 1609 3.495001 GCTATATCAAAGTTGTCGCTCCC 59.505 47.826 0.00 0.00 0.00 4.30
1546 1648 8.177119 AGATCAGATGTAGACTTGATAAGGAC 57.823 38.462 0.00 0.00 0.00 3.85
1606 1708 0.371989 TTATTCGGTGATGCAACGCG 59.628 50.000 3.53 3.53 44.89 6.01
1613 1715 5.180117 GGTCCATCTTGATTATTCGGTGATG 59.820 44.000 0.00 0.00 0.00 3.07
1729 1832 1.831580 AGCAGTTCAAATGGAGCTCC 58.168 50.000 26.78 26.78 34.49 4.70
1730 1833 2.670509 GCAAGCAGTTCAAATGGAGCTC 60.671 50.000 4.71 4.71 34.49 4.09
1756 1859 5.157940 AGCTGAGACATCAACATAACTGT 57.842 39.130 0.00 0.00 34.23 3.55
1784 1887 9.594478 TCTGCAAAGAGATACAAATCGTATAAA 57.406 29.630 0.00 0.00 41.06 1.40
1793 1896 5.532406 ACAGCTTTCTGCAAAGAGATACAAA 59.468 36.000 2.23 0.00 44.10 2.83
1795 1898 4.645535 ACAGCTTTCTGCAAAGAGATACA 58.354 39.130 2.23 0.00 44.10 2.29
1810 1913 4.455877 CCCGAAACAAGAAGATACAGCTTT 59.544 41.667 0.00 0.00 0.00 3.51
1899 2002 1.379576 AAGAGAGTACCCCGGGTCG 60.380 63.158 21.85 7.60 37.09 4.79
1933 2036 1.742831 GACCATGGCTATCGCAAACAA 59.257 47.619 13.04 0.00 38.10 2.83
1953 2056 0.892755 TACCTCCAACAGTAGCACCG 59.107 55.000 0.00 0.00 0.00 4.94
1985 2088 4.386867 TTCCTACGTGCTAAGATCCTTG 57.613 45.455 0.00 0.00 0.00 3.61
2000 2109 4.217550 TGCTAGCCACAAACAATTTCCTAC 59.782 41.667 13.29 0.00 0.00 3.18
2026 2135 4.518970 TGTTGGGCTGAAACTTAAAGCTAG 59.481 41.667 0.00 0.00 37.12 3.42
2037 2146 2.719531 TGTGTAGTGTTGGGCTGAAA 57.280 45.000 0.00 0.00 0.00 2.69
2081 2196 8.791327 TGCTCAAGATGTTGATGAAGTATTAA 57.209 30.769 5.65 0.00 41.96 1.40
2083 2198 6.883217 ACTGCTCAAGATGTTGATGAAGTATT 59.117 34.615 5.65 0.00 41.96 1.89
2091 2206 7.876936 ATTCATAACTGCTCAAGATGTTGAT 57.123 32.000 5.65 0.00 41.96 2.57
2097 2212 9.399797 TGTTTGATATTCATAACTGCTCAAGAT 57.600 29.630 0.00 0.00 0.00 2.40
2141 2259 5.401550 CAGAAGTTGTCAGCAGTTCAAAAA 58.598 37.500 0.00 0.00 0.00 1.94
2142 2260 4.142403 CCAGAAGTTGTCAGCAGTTCAAAA 60.142 41.667 0.00 0.00 0.00 2.44
2143 2261 3.378112 CCAGAAGTTGTCAGCAGTTCAAA 59.622 43.478 0.00 0.00 0.00 2.69
2163 2281 5.455872 AGATTAGATTTCTACCGTCTCCCA 58.544 41.667 0.00 0.00 0.00 4.37
2169 2287 5.834204 AGGCTGTAGATTAGATTTCTACCGT 59.166 40.000 8.04 0.00 43.17 4.83
2209 2327 0.757188 TGGGGCGCTTTTGGAGAAAA 60.757 50.000 7.64 0.00 0.00 2.29
2212 2330 1.152652 TTTGGGGCGCTTTTGGAGA 60.153 52.632 7.64 0.00 0.00 3.71
2264 2382 4.523083 TGAGTTGTACTTTGTGCCTTCTT 58.477 39.130 0.00 0.00 0.00 2.52
2296 2414 4.376413 CGAGTTGTACTTGCACAATGTCTC 60.376 45.833 0.00 0.00 40.36 3.36
2303 2421 3.446310 TTCTCGAGTTGTACTTGCACA 57.554 42.857 13.13 0.00 29.55 4.57
2305 2423 3.558418 GGTTTTCTCGAGTTGTACTTGCA 59.442 43.478 13.13 0.00 29.55 4.08
2319 2437 7.595311 ATGTTTGTTTGTCTTTGGTTTTCTC 57.405 32.000 0.00 0.00 0.00 2.87
2339 2457 5.167845 AGCAAAAAGACAAACGTGAATGTT 58.832 33.333 0.00 0.00 0.00 2.71
2375 2493 9.162764 AGGATACATACACTGTTTTTCATGTAC 57.837 33.333 4.54 0.00 39.39 2.90
2376 2494 9.733556 AAGGATACATACACTGTTTTTCATGTA 57.266 29.630 4.82 4.82 39.39 2.29
2377 2495 8.635765 AAGGATACATACACTGTTTTTCATGT 57.364 30.769 0.00 1.22 39.39 3.21
2387 2505 7.782049 TCAGGTCTTTAAGGATACATACACTG 58.218 38.462 0.00 0.00 41.41 3.66
2388 2506 7.973048 TCAGGTCTTTAAGGATACATACACT 57.027 36.000 0.00 0.00 41.41 3.55
2424 2543 0.743688 ACCGCAACATGCTTGAACAA 59.256 45.000 6.60 0.00 42.25 2.83
2437 2556 1.898902 TAGGCAAAAGCTAACCGCAA 58.101 45.000 0.00 0.00 42.61 4.85
2441 2560 8.622948 AATAGTCATATAGGCAAAAGCTAACC 57.377 34.615 0.00 0.00 0.00 2.85
2469 2588 4.159321 TCACAAAAGAAACAGTCATTGGCA 59.841 37.500 0.00 0.00 32.45 4.92
2479 2598 2.028130 ACGGCCATCACAAAAGAAACA 58.972 42.857 2.24 0.00 0.00 2.83
2495 2614 1.098050 AGAGCATGATGGAAAACGGC 58.902 50.000 0.00 0.00 0.00 5.68
2523 2642 9.319143 AGTAACTACTGCATATGTCATTTTCTC 57.681 33.333 4.29 0.00 34.72 2.87
2550 2669 6.407202 CAAGGGTAACTAAGCAGTATGAAGT 58.593 40.000 0.00 0.00 39.69 3.01
2552 2671 5.249852 ACCAAGGGTAACTAAGCAGTATGAA 59.750 40.000 0.00 0.00 32.56 2.57
2554 2673 5.099042 ACCAAGGGTAACTAAGCAGTATG 57.901 43.478 0.00 0.00 33.84 2.39
2555 2674 5.774102 AACCAAGGGTAACTAAGCAGTAT 57.226 39.130 0.00 0.00 33.12 2.12
2560 2679 6.178324 ACAGAATAACCAAGGGTAACTAAGC 58.822 40.000 0.00 0.00 33.12 3.09
2565 2684 7.881751 AGAACTTACAGAATAACCAAGGGTAAC 59.118 37.037 0.00 0.00 33.12 2.50
2568 2687 6.183361 ACAGAACTTACAGAATAACCAAGGGT 60.183 38.462 0.00 0.00 37.65 4.34
2591 2710 6.440647 ACCTCCAGAGAGACAAACATATTACA 59.559 38.462 0.00 0.00 43.39 2.41
2604 2723 1.649321 ATGTTGCACCTCCAGAGAGA 58.351 50.000 0.00 0.00 43.39 3.10
2656 2775 1.142748 CTCGCAAGGAGCCCTACAG 59.857 63.158 0.00 0.00 41.38 2.74
2659 2778 0.902984 TTGTCTCGCAAGGAGCCCTA 60.903 55.000 0.00 0.00 42.82 3.53
2717 2836 6.981762 CTTCTCAGTGAAGCATTTATCTGT 57.018 37.500 0.00 0.00 44.62 3.41
2753 2872 3.457380 TCAAAGCAGGAGCATAGGATTCT 59.543 43.478 0.00 0.00 45.49 2.40
3023 3142 4.376920 CGATCAGTTTCAAATGTGCGTACA 60.377 41.667 9.28 9.28 41.89 2.90
3045 3164 1.524986 CGAAGTACGCATCAAAGCACG 60.525 52.381 0.00 0.00 34.51 5.34
3097 3216 4.458397 ACTATCATTGGCATGTTCAGGAG 58.542 43.478 0.00 0.00 0.00 3.69
3221 3340 4.739716 CCGTCAGTTGGATTTCACAAAAAG 59.260 41.667 0.00 0.00 0.00 2.27
3356 3476 1.210234 CCATATGCCTCAGTGACACCA 59.790 52.381 0.84 0.00 0.00 4.17
3470 3590 4.312231 GCGCGCACACACACACAT 62.312 61.111 29.10 0.00 0.00 3.21
3483 3685 3.964221 TTCTCACAGGTAGCGCGCG 62.964 63.158 28.44 28.44 0.00 6.86
3485 3687 1.756375 GCATTCTCACAGGTAGCGCG 61.756 60.000 0.00 0.00 0.00 6.86
3487 3689 1.725641 TTGCATTCTCACAGGTAGCG 58.274 50.000 0.00 0.00 0.00 4.26
3523 3725 8.298729 AGACATCATATGACTAGTGAAGAACA 57.701 34.615 7.78 0.00 33.67 3.18
3690 4153 2.813754 CAAGTCGGAAAGCTGGATTTCA 59.186 45.455 12.32 0.00 40.29 2.69
3793 4257 4.037208 CACTTGAGCAGAAAACCTTCACAT 59.963 41.667 0.00 0.00 33.64 3.21
3794 4258 3.378112 CACTTGAGCAGAAAACCTTCACA 59.622 43.478 0.00 0.00 33.64 3.58
3891 4500 4.099573 CAGTCCTTTCTCATATGTACCCGT 59.900 45.833 1.90 0.00 0.00 5.28
3942 4556 1.144708 TGAGTCATCACCAAAAGGCCA 59.855 47.619 5.01 0.00 0.00 5.36
3983 4599 3.638627 CCTGATACTATGAGGACACTGCA 59.361 47.826 0.00 0.00 35.45 4.41
3984 4600 3.553922 GCCTGATACTATGAGGACACTGC 60.554 52.174 5.77 0.00 35.45 4.40
3985 4601 3.638627 TGCCTGATACTATGAGGACACTG 59.361 47.826 5.77 0.00 35.45 3.66
3986 4602 3.916035 TGCCTGATACTATGAGGACACT 58.084 45.455 5.77 0.00 35.45 3.55
3987 4603 4.672587 TTGCCTGATACTATGAGGACAC 57.327 45.455 5.77 0.00 35.45 3.67
3988 4604 4.101585 CCTTTGCCTGATACTATGAGGACA 59.898 45.833 5.77 1.20 35.45 4.02
3989 4605 4.101741 ACCTTTGCCTGATACTATGAGGAC 59.898 45.833 5.77 0.00 35.45 3.85
3990 4606 4.101585 CACCTTTGCCTGATACTATGAGGA 59.898 45.833 5.77 0.00 35.45 3.71
3991 4607 4.101585 TCACCTTTGCCTGATACTATGAGG 59.898 45.833 0.00 0.00 36.66 3.86
3992 4608 5.282055 TCACCTTTGCCTGATACTATGAG 57.718 43.478 0.00 0.00 0.00 2.90
3993 4609 5.674525 CTTCACCTTTGCCTGATACTATGA 58.325 41.667 0.00 0.00 0.00 2.15
4005 4621 0.109597 CATCCACGCTTCACCTTTGC 60.110 55.000 0.00 0.00 0.00 3.68
4089 4725 6.001449 AGCATATAGGCTAACCAAACTCAA 57.999 37.500 10.76 0.00 43.70 3.02
4129 4766 4.562082 TGTCACCTACTTCAACAATACGG 58.438 43.478 0.00 0.00 0.00 4.02
4158 4795 5.147162 GCTTAACTTCGTCAAACATCTTGG 58.853 41.667 0.00 0.00 0.00 3.61
4182 4819 0.956633 CACATGCCTGACAAAGCACT 59.043 50.000 2.11 0.00 42.84 4.40
4184 4821 1.661480 GCACATGCCTGACAAAGCA 59.339 52.632 2.54 2.54 44.45 3.91
4185 4822 4.565531 GCACATGCCTGACAAAGC 57.434 55.556 0.00 0.00 34.31 3.51
4256 4899 4.984295 TGGTCCTCATCACAATGAAAGAA 58.016 39.130 0.00 0.00 41.33 2.52
4261 4904 3.776417 TCTCATGGTCCTCATCACAATGA 59.224 43.478 0.00 0.00 39.63 2.57
4324 4975 2.676121 CCAAGGTCCGCCAATGCA 60.676 61.111 0.00 0.00 37.32 3.96
4406 5059 0.671251 GAAGCCGTCCTCTCATCGAT 59.329 55.000 0.00 0.00 0.00 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.