Multiple sequence alignment - TraesCS5A01G173900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G173900 chr5A 100.000 8941 0 0 1 8941 367126005 367134945 0.000000e+00 16512.0
1 TraesCS5A01G173900 chr5A 91.954 87 7 0 5441 5527 688704965 688705051 1.220000e-23 122.0
2 TraesCS5A01G173900 chr5A 91.765 85 7 0 5441 5525 59700882 59700798 1.580000e-22 119.0
3 TraesCS5A01G173900 chr5B 95.770 4539 132 24 793 5296 315922446 315926959 0.000000e+00 7263.0
4 TraesCS5A01G173900 chr5B 92.529 1740 67 27 5524 7219 315927193 315928913 0.000000e+00 2435.0
5 TraesCS5A01G173900 chr5B 91.791 670 28 7 7253 7901 315928912 315929575 0.000000e+00 907.0
6 TraesCS5A01G173900 chr5B 84.278 776 65 20 1 735 315921686 315922445 0.000000e+00 704.0
7 TraesCS5A01G173900 chr5B 87.234 423 44 3 8320 8735 315941405 315941824 2.920000e-129 473.0
8 TraesCS5A01G173900 chr5B 91.729 266 16 1 8034 8293 315934104 315934369 1.830000e-96 364.0
9 TraesCS5A01G173900 chr5B 95.082 183 8 1 7864 8046 315929614 315929795 4.090000e-73 287.0
10 TraesCS5A01G173900 chr5B 97.315 149 4 0 5294 5442 315927046 315927194 4.140000e-63 254.0
11 TraesCS5A01G173900 chr5B 91.765 85 7 0 5441 5525 217907767 217907683 1.580000e-22 119.0
12 TraesCS5A01G173900 chr5D 96.494 3794 92 18 1536 5303 277816469 277820247 0.000000e+00 6231.0
13 TraesCS5A01G173900 chr5D 94.921 1575 45 14 5524 7068 277820470 277822039 0.000000e+00 2433.0
14 TraesCS5A01G173900 chr5D 95.018 823 33 3 7864 8679 277822821 277823642 0.000000e+00 1286.0
15 TraesCS5A01G173900 chr5D 93.363 663 27 6 7253 7901 277822161 277822820 0.000000e+00 965.0
16 TraesCS5A01G173900 chr5D 82.115 889 95 29 3 840 277814188 277815063 0.000000e+00 702.0
17 TraesCS5A01G173900 chr5D 96.450 338 7 2 837 1169 277815223 277815560 3.650000e-153 553.0
18 TraesCS5A01G173900 chr5D 94.637 317 16 1 1222 1537 277816071 277816387 2.900000e-134 490.0
19 TraesCS5A01G173900 chr5D 94.631 149 8 0 5294 5442 277820323 277820471 1.940000e-56 231.0
20 TraesCS5A01G173900 chr5D 94.167 120 6 1 7163 7281 322389036 322389155 1.980000e-41 182.0
21 TraesCS5A01G173900 chr5D 91.057 123 11 0 7097 7219 277822040 277822162 5.550000e-37 167.0
22 TraesCS5A01G173900 chr5D 91.765 85 7 0 5441 5525 188826619 188826535 1.580000e-22 119.0
23 TraesCS5A01G173900 chr6A 85.366 205 28 2 8729 8932 8790563 8790360 2.530000e-50 211.0
24 TraesCS5A01G173900 chr6A 90.152 132 13 0 7163 7294 8606346 8606477 1.190000e-38 172.0
25 TraesCS5A01G173900 chr7D 84.507 213 31 2 8729 8940 45538647 45538436 9.100000e-50 209.0
26 TraesCS5A01G173900 chr7D 86.842 152 12 4 7174 7322 44422904 44422758 7.180000e-36 163.0
27 TraesCS5A01G173900 chr7D 84.298 121 12 6 5434 5550 148142203 148142320 2.640000e-20 111.0
28 TraesCS5A01G173900 chr2D 83.721 215 32 2 8729 8941 178528738 178528525 5.470000e-47 200.0
29 TraesCS5A01G173900 chr2D 80.645 217 36 6 8729 8941 566479348 566479134 7.180000e-36 163.0
30 TraesCS5A01G173900 chr2D 89.109 101 7 4 5433 5532 512165931 512165834 1.220000e-23 122.0
31 TraesCS5A01G173900 chr7A 93.284 134 6 2 7163 7294 498590385 498590253 2.550000e-45 195.0
32 TraesCS5A01G173900 chr7A 82.326 215 34 4 8729 8941 14487270 14487058 5.510000e-42 183.0
33 TraesCS5A01G173900 chr3A 92.647 136 8 1 7154 7287 621323730 621323865 2.550000e-45 195.0
34 TraesCS5A01G173900 chr3A 91.304 138 9 2 7160 7294 332556163 332556300 1.530000e-42 185.0
35 TraesCS5A01G173900 chr2B 84.158 202 30 2 8729 8929 416184588 416184388 2.550000e-45 195.0
36 TraesCS5A01G173900 chr3D 87.805 164 18 2 8729 8891 613620824 613620986 3.290000e-44 191.0
37 TraesCS5A01G173900 chr3D 91.111 135 9 2 7163 7294 251316138 251316004 7.130000e-41 180.0
38 TraesCS5A01G173900 chr3D 82.723 191 28 5 8752 8939 475139567 475139755 2.000000e-36 165.0
39 TraesCS5A01G173900 chr3D 86.184 152 13 4 7174 7322 67426367 67426221 3.340000e-34 158.0
40 TraesCS5A01G173900 chr3D 94.737 38 1 1 415 451 107677185 107677148 3.490000e-04 58.4
41 TraesCS5A01G173900 chrUn 82.326 215 34 4 8729 8941 81428323 81428535 5.510000e-42 183.0
42 TraesCS5A01G173900 chr4A 92.308 130 6 3 7164 7290 477033207 477033335 1.980000e-41 182.0
43 TraesCS5A01G173900 chr6D 91.765 85 7 0 5441 5525 142148715 142148799 1.580000e-22 119.0
44 TraesCS5A01G173900 chr4D 90.110 91 9 0 5437 5527 477107836 477107926 1.580000e-22 119.0
45 TraesCS5A01G173900 chr1D 89.247 93 9 1 5441 5533 245893699 245893790 2.040000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G173900 chr5A 367126005 367134945 8940 False 16512.000000 16512 100.000000 1 8941 1 chr5A.!!$F1 8940
1 TraesCS5A01G173900 chr5B 315921686 315929795 8109 False 1975.000000 7263 92.794167 1 8046 6 chr5B.!!$F3 8045
2 TraesCS5A01G173900 chr5D 277814188 277823642 9454 False 1450.888889 6231 93.187333 3 8679 9 chr5D.!!$F2 8676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 479 0.179004 TCTGGACGGTGGCATGTTTT 60.179 50.000 0.00 0.00 0.00 2.43 F
1252 1930 0.033504 TTCTATCGGCTGAATCGGGC 59.966 55.000 5.46 5.46 0.00 6.13 F
1681 2443 1.456705 GTCCATCTCCGAGCTCCCT 60.457 63.158 8.47 0.00 0.00 4.20 F
2127 2890 2.103601 ACAAGCCAAAAATGCTGCTCTT 59.896 40.909 0.00 0.00 39.48 2.85 F
3907 4686 0.330604 AGCATCACCCATCTGCTGTT 59.669 50.000 0.00 0.00 44.21 3.16 F
4092 4871 0.889186 GCTGTGGTAGTGGGGTTGTG 60.889 60.000 0.00 0.00 0.00 3.33 F
4094 4873 1.142060 CTGTGGTAGTGGGGTTGTGAA 59.858 52.381 0.00 0.00 0.00 3.18 F
5083 5873 3.593442 TCAATGGGTTCTGTTCCAGTT 57.407 42.857 0.00 0.00 36.38 3.16 F
6766 7781 1.527034 ACATGCTTTGTGACGCTGAT 58.473 45.000 0.00 0.00 37.11 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 2594 1.265462 CGCGCTCTCGATCAACTAGC 61.265 60.000 5.56 0.0 38.1 3.42 R
2285 3048 3.430929 GCATACCTCGGCCATTATCCTAG 60.431 52.174 2.24 0.0 0.0 3.02 R
3457 4234 5.778241 TGTGAGGGACATTTCTGAGTAGTAA 59.222 40.000 0.00 0.0 0.0 2.24 R
4051 4830 1.654220 CACGAAAACCCCAGCACAG 59.346 57.895 0.00 0.0 0.0 3.66 R
5401 6368 2.028420 TATCTGCCATCACACACTGC 57.972 50.000 0.00 0.0 0.0 4.40 R
5911 6914 2.386661 TGAATCTTCTCGGCAAGGAC 57.613 50.000 0.00 0.0 0.0 3.85 R
6130 7136 6.704056 TCCAACTAAAAGGAAGAGGAAGAT 57.296 37.500 0.00 0.0 0.0 2.40 R
6982 7997 0.110056 CCTGTTCAACATGCTGCGTC 60.110 55.000 0.00 0.0 0.0 5.19 R
7961 9113 0.106894 GATGAGATCAACGGTCCCCC 59.893 60.000 0.00 0.0 0.0 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.163268 GGAAGCTCATCTCTAAGGAACCTT 59.837 45.833 10.97 10.97 39.83 3.50
40 41 5.537674 TCTCTAAGGAACCTTCACGTTAAGT 59.462 40.000 9.50 0.00 37.47 2.24
44 45 8.370182 TCTAAGGAACCTTCACGTTAAGTTTAT 58.630 33.333 9.50 0.00 37.47 1.40
45 46 9.643693 CTAAGGAACCTTCACGTTAAGTTTATA 57.356 33.333 9.50 0.00 37.47 0.98
47 48 9.511272 AAGGAACCTTCACGTTAAGTTTATATT 57.489 29.630 8.58 0.00 0.00 1.28
49 50 9.550811 GGAACCTTCACGTTAAGTTTATATTTG 57.449 33.333 8.58 0.00 0.00 2.32
50 51 8.959734 AACCTTCACGTTAAGTTTATATTTGC 57.040 30.769 8.58 0.00 0.00 3.68
51 52 7.238571 ACCTTCACGTTAAGTTTATATTTGCG 58.761 34.615 8.58 0.00 0.00 4.85
52 53 7.118101 ACCTTCACGTTAAGTTTATATTTGCGA 59.882 33.333 8.58 0.00 0.00 5.10
95 99 3.223435 ACTCAGGAGTTCTTTCGAGTGA 58.777 45.455 0.00 0.00 38.83 3.41
96 100 3.254657 ACTCAGGAGTTCTTTCGAGTGAG 59.745 47.826 0.00 0.00 38.83 3.51
97 101 3.487372 TCAGGAGTTCTTTCGAGTGAGA 58.513 45.455 0.00 0.00 0.00 3.27
98 102 4.082845 TCAGGAGTTCTTTCGAGTGAGAT 58.917 43.478 0.00 0.00 0.00 2.75
99 103 4.524714 TCAGGAGTTCTTTCGAGTGAGATT 59.475 41.667 0.00 0.00 0.00 2.40
100 104 5.011125 TCAGGAGTTCTTTCGAGTGAGATTT 59.989 40.000 0.00 0.00 0.00 2.17
101 105 5.698545 CAGGAGTTCTTTCGAGTGAGATTTT 59.301 40.000 0.00 0.00 0.00 1.82
162 178 4.350225 AGTCTAGATATCACCCCGTAGACA 59.650 45.833 20.83 0.00 39.13 3.41
185 201 4.265904 TCTTCGTGCCTTTACAATCTCA 57.734 40.909 0.00 0.00 0.00 3.27
215 233 7.755373 CCTTCATAATATCATCGACGAAAGCTA 59.245 37.037 0.00 0.00 0.00 3.32
227 245 4.694339 GACGAAAGCTATTGAGGGTGTAT 58.306 43.478 0.00 0.00 0.00 2.29
238 256 6.636454 ATTGAGGGTGTATTGTTTAGGAGA 57.364 37.500 0.00 0.00 0.00 3.71
241 259 4.091549 AGGGTGTATTGTTTAGGAGACGA 58.908 43.478 0.00 0.00 0.00 4.20
260 278 4.773013 ACGAACACCCTCAAGAGTAAAAA 58.227 39.130 0.00 0.00 0.00 1.94
308 327 3.118920 TCCGCAAAGGATCTTTCGACATA 60.119 43.478 0.93 0.00 45.98 2.29
398 418 2.237392 GCTTGTGAGGTTATGTCTCCCT 59.763 50.000 0.00 0.00 0.00 4.20
405 425 3.312890 AGGTTATGTCTCCCTGGATCTG 58.687 50.000 0.00 0.00 0.00 2.90
413 433 0.475632 TCCCTGGATCTGTGGTGGTT 60.476 55.000 0.00 0.00 0.00 3.67
459 479 0.179004 TCTGGACGGTGGCATGTTTT 60.179 50.000 0.00 0.00 0.00 2.43
464 484 1.737793 GACGGTGGCATGTTTTCTAGG 59.262 52.381 0.00 0.00 0.00 3.02
510 557 6.669741 GCCGTTGCTTAACAAATTTATTCTGC 60.670 38.462 0.00 0.00 40.82 4.26
513 560 7.116233 CGTTGCTTAACAAATTTATTCTGCCTT 59.884 33.333 0.00 0.00 40.82 4.35
550 597 0.820226 TCGAGAGGAGGCATCAACTG 59.180 55.000 0.00 0.00 0.00 3.16
610 657 4.026744 TGGTGTTGATTTTCCCAAAGACA 58.973 39.130 0.00 0.00 0.00 3.41
675 722 7.680730 ACTCTGTATTATGTTGGTCAGAAAGT 58.319 34.615 0.00 0.00 32.76 2.66
699 746 7.546667 AGTCCGCGAAGACATAATTAAGTAAAA 59.453 33.333 8.23 0.00 39.34 1.52
736 783 3.971245 AAAAAGTGTTTTGGGCAGTGA 57.029 38.095 0.00 0.00 35.58 3.41
739 786 2.435372 AGTGTTTTGGGCAGTGAGAA 57.565 45.000 0.00 0.00 0.00 2.87
757 804 4.037446 TGAGAAAACCCGAAAAAGTCATGG 59.963 41.667 0.00 0.00 0.00 3.66
769 816 7.335924 CCGAAAAAGTCATGGAACCTAAGATTA 59.664 37.037 0.00 0.00 0.00 1.75
973 1187 3.420482 CCAATTCTCCCCGCCCCT 61.420 66.667 0.00 0.00 0.00 4.79
1252 1930 0.033504 TTCTATCGGCTGAATCGGGC 59.966 55.000 5.46 5.46 0.00 6.13
1340 2018 3.798337 GGTTTTGACAATGTGAGCTTGTG 59.202 43.478 0.00 0.00 36.98 3.33
1463 2142 6.346838 GCAGTCTTGTTTAAAATTGACATGGC 60.347 38.462 14.14 0.00 0.00 4.40
1501 2180 5.066505 AGCTGGGCTAAATAAGAATGAAACG 59.933 40.000 0.00 0.00 36.99 3.60
1546 2308 9.937175 GGATGAACAGTAATATAGTTTTGAAGC 57.063 33.333 0.00 0.00 0.00 3.86
1681 2443 1.456705 GTCCATCTCCGAGCTCCCT 60.457 63.158 8.47 0.00 0.00 4.20
1832 2594 5.969423 AGCAAATTCAACACAATGATAGGG 58.031 37.500 0.00 0.00 0.00 3.53
2062 2825 7.317842 TCTGATACTACTGTAAAACTCCTCG 57.682 40.000 0.00 0.00 31.80 4.63
2127 2890 2.103601 ACAAGCCAAAAATGCTGCTCTT 59.896 40.909 0.00 0.00 39.48 2.85
2175 2938 4.692475 CGCGGAAAAGGTCGGGGT 62.692 66.667 0.00 0.00 35.52 4.95
2285 3048 7.275341 TGAACAATCTTGAATGTTTTGTGTGTC 59.725 33.333 5.66 0.00 39.73 3.67
2441 3204 6.193514 TGTGCAACATCACTGGTATTATTG 57.806 37.500 0.00 0.00 45.67 1.90
2596 3359 6.274157 ACCCTCTCATAAGAATGTATAGCG 57.726 41.667 0.00 0.00 34.50 4.26
2910 3674 6.056884 ACATTTTAGTTAGAACGGTTGTCCA 58.943 36.000 0.00 0.00 0.00 4.02
2959 3723 6.471233 TCTTCAATAGGGAGACATGTACAG 57.529 41.667 0.00 0.00 0.00 2.74
3091 3855 3.319122 GCAGACTTTGAACATTGGACCTT 59.681 43.478 0.00 0.00 0.00 3.50
3093 3857 5.682212 GCAGACTTTGAACATTGGACCTTTT 60.682 40.000 0.00 0.00 0.00 2.27
3379 4143 3.405831 CTTCTTGGTCAATGCTCTGTGA 58.594 45.455 0.00 0.00 0.00 3.58
3745 4522 3.896272 TCTCAGATGCAGCAGAGTATGAT 59.104 43.478 21.66 0.00 0.00 2.45
3769 4546 6.920569 TTTTCTTCTCTGGTACTTTGTGTC 57.079 37.500 0.00 0.00 0.00 3.67
3895 4674 2.227388 CCCACTTCTGACAAAGCATCAC 59.773 50.000 0.00 0.00 0.00 3.06
3907 4686 0.330604 AGCATCACCCATCTGCTGTT 59.669 50.000 0.00 0.00 44.21 3.16
4032 4811 7.171337 TGACCGTTTAATTGGTGAGTTACTTAC 59.829 37.037 4.01 0.00 38.99 2.34
4033 4812 7.219322 ACCGTTTAATTGGTGAGTTACTTACT 58.781 34.615 7.21 0.00 40.71 2.24
4034 4813 7.716560 ACCGTTTAATTGGTGAGTTACTTACTT 59.283 33.333 7.21 0.00 37.17 2.24
4035 4814 9.206870 CCGTTTAATTGGTGAGTTACTTACTTA 57.793 33.333 7.21 0.00 37.17 2.24
4051 4830 7.596749 ACTTACTTAGTTGTGTGATATGCAC 57.403 36.000 0.00 0.00 40.17 4.57
4092 4871 0.889186 GCTGTGGTAGTGGGGTTGTG 60.889 60.000 0.00 0.00 0.00 3.33
4094 4873 1.142060 CTGTGGTAGTGGGGTTGTGAA 59.858 52.381 0.00 0.00 0.00 3.18
4379 5161 7.034967 ACCTATGGTTGATACCTTTACCAAA 57.965 36.000 0.00 0.00 45.27 3.28
4576 5358 8.565896 TGATTTGTTAATCACTTATCAGCTGT 57.434 30.769 14.67 3.75 43.93 4.40
4765 5547 6.566079 TTAATCAGAGAATGTCCCAGATGT 57.434 37.500 0.00 0.00 0.00 3.06
4945 5731 7.496529 TTTCACAAGGAGTATTTTCTGTCTG 57.503 36.000 0.00 0.00 0.00 3.51
4947 5733 6.223852 TCACAAGGAGTATTTTCTGTCTGTC 58.776 40.000 0.00 0.00 0.00 3.51
4948 5734 5.991606 CACAAGGAGTATTTTCTGTCTGTCA 59.008 40.000 0.00 0.00 0.00 3.58
4949 5735 6.652481 CACAAGGAGTATTTTCTGTCTGTCAT 59.348 38.462 0.00 0.00 0.00 3.06
4950 5736 6.876257 ACAAGGAGTATTTTCTGTCTGTCATC 59.124 38.462 0.00 0.00 0.00 2.92
4952 5738 7.251321 AGGAGTATTTTCTGTCTGTCATCTT 57.749 36.000 0.00 0.00 0.00 2.40
4953 5739 8.367660 AGGAGTATTTTCTGTCTGTCATCTTA 57.632 34.615 0.00 0.00 0.00 2.10
4954 5740 8.816894 AGGAGTATTTTCTGTCTGTCATCTTAA 58.183 33.333 0.00 0.00 0.00 1.85
5083 5873 3.593442 TCAATGGGTTCTGTTCCAGTT 57.407 42.857 0.00 0.00 36.38 3.16
5095 5885 6.790232 TCTGTTCCAGTTTTCCTTTTGAAT 57.210 33.333 0.00 0.00 30.76 2.57
5401 6368 3.878086 TTGTTTTCTCGTAGCTGCTTG 57.122 42.857 7.79 0.74 0.00 4.01
5446 6413 9.643693 ATTGTGAATGTCAAAATTGATACTTCC 57.356 29.630 0.00 0.51 39.73 3.46
5447 6414 8.408043 TGTGAATGTCAAAATTGATACTTCCT 57.592 30.769 0.00 0.00 39.73 3.36
5448 6415 8.859090 TGTGAATGTCAAAATTGATACTTCCTT 58.141 29.630 0.00 0.00 39.73 3.36
5449 6416 9.346725 GTGAATGTCAAAATTGATACTTCCTTC 57.653 33.333 0.00 0.00 39.73 3.46
5450 6417 8.236586 TGAATGTCAAAATTGATACTTCCTTCG 58.763 33.333 0.00 0.00 39.73 3.79
5451 6418 7.687941 ATGTCAAAATTGATACTTCCTTCGT 57.312 32.000 0.00 0.00 39.73 3.85
5452 6419 7.129109 TGTCAAAATTGATACTTCCTTCGTC 57.871 36.000 0.00 0.00 39.73 4.20
5453 6420 6.148811 TGTCAAAATTGATACTTCCTTCGTCC 59.851 38.462 0.00 0.00 39.73 4.79
5454 6421 5.646360 TCAAAATTGATACTTCCTTCGTCCC 59.354 40.000 0.00 0.00 31.01 4.46
5455 6422 4.837093 AATTGATACTTCCTTCGTCCCA 57.163 40.909 0.00 0.00 0.00 4.37
5456 6423 5.373812 AATTGATACTTCCTTCGTCCCAT 57.626 39.130 0.00 0.00 0.00 4.00
5457 6424 6.494666 AATTGATACTTCCTTCGTCCCATA 57.505 37.500 0.00 0.00 0.00 2.74
5458 6425 5.943349 TTGATACTTCCTTCGTCCCATAA 57.057 39.130 0.00 0.00 0.00 1.90
5459 6426 6.494666 TTGATACTTCCTTCGTCCCATAAT 57.505 37.500 0.00 0.00 0.00 1.28
5460 6427 7.606135 TTGATACTTCCTTCGTCCCATAATA 57.394 36.000 0.00 0.00 0.00 0.98
5461 6428 7.792364 TGATACTTCCTTCGTCCCATAATAT 57.208 36.000 0.00 0.00 0.00 1.28
5462 6429 8.888836 TGATACTTCCTTCGTCCCATAATATA 57.111 34.615 0.00 0.00 0.00 0.86
5463 6430 9.316594 TGATACTTCCTTCGTCCCATAATATAA 57.683 33.333 0.00 0.00 0.00 0.98
5464 6431 9.804758 GATACTTCCTTCGTCCCATAATATAAG 57.195 37.037 0.00 0.00 0.00 1.73
5465 6432 7.850935 ACTTCCTTCGTCCCATAATATAAGA 57.149 36.000 0.00 0.00 0.00 2.10
5466 6433 7.668492 ACTTCCTTCGTCCCATAATATAAGAC 58.332 38.462 0.00 0.00 0.00 3.01
5474 6441 6.849305 CGTCCCATAATATAAGACGTTTTTGC 59.151 38.462 13.04 0.00 43.89 3.68
5475 6442 7.466185 CGTCCCATAATATAAGACGTTTTTGCA 60.466 37.037 13.04 0.00 43.89 4.08
5476 6443 8.185505 GTCCCATAATATAAGACGTTTTTGCAA 58.814 33.333 0.00 0.00 0.00 4.08
5477 6444 8.402472 TCCCATAATATAAGACGTTTTTGCAAG 58.598 33.333 0.00 0.00 0.00 4.01
5478 6445 7.167468 CCCATAATATAAGACGTTTTTGCAAGC 59.833 37.037 0.00 0.00 0.00 4.01
5479 6446 7.915397 CCATAATATAAGACGTTTTTGCAAGCT 59.085 33.333 0.00 0.00 0.00 3.74
5480 6447 9.929722 CATAATATAAGACGTTTTTGCAAGCTA 57.070 29.630 0.00 0.00 0.00 3.32
5482 6449 8.669394 AATATAAGACGTTTTTGCAAGCTAAC 57.331 30.769 0.00 5.28 0.00 2.34
5483 6450 4.364415 AAGACGTTTTTGCAAGCTAACA 57.636 36.364 16.37 0.00 0.00 2.41
5484 6451 4.568152 AGACGTTTTTGCAAGCTAACAT 57.432 36.364 16.37 5.95 0.00 2.71
5485 6452 5.682943 AGACGTTTTTGCAAGCTAACATA 57.317 34.783 16.37 0.00 0.00 2.29
5486 6453 5.689819 AGACGTTTTTGCAAGCTAACATAG 58.310 37.500 16.37 7.17 0.00 2.23
5501 6468 6.362632 CTAACATAGCTTGCAAAAACGTTC 57.637 37.500 0.00 0.00 0.00 3.95
5502 6469 4.568152 ACATAGCTTGCAAAAACGTTCT 57.432 36.364 0.00 0.00 0.00 3.01
5503 6470 5.682943 ACATAGCTTGCAAAAACGTTCTA 57.317 34.783 0.00 0.00 0.00 2.10
5504 6471 6.254281 ACATAGCTTGCAAAAACGTTCTAT 57.746 33.333 0.00 0.00 0.00 1.98
5505 6472 7.372451 ACATAGCTTGCAAAAACGTTCTATA 57.628 32.000 0.00 0.00 0.00 1.31
5506 6473 7.985476 ACATAGCTTGCAAAAACGTTCTATAT 58.015 30.769 0.00 0.00 0.00 0.86
5507 6474 8.458843 ACATAGCTTGCAAAAACGTTCTATATT 58.541 29.630 0.00 0.00 0.00 1.28
5508 6475 8.736742 CATAGCTTGCAAAAACGTTCTATATTG 58.263 33.333 0.00 4.02 0.00 1.90
5509 6476 6.677913 AGCTTGCAAAAACGTTCTATATTGT 58.322 32.000 0.00 0.00 0.00 2.71
5510 6477 6.582295 AGCTTGCAAAAACGTTCTATATTGTG 59.418 34.615 0.00 0.00 0.00 3.33
5511 6478 6.580791 GCTTGCAAAAACGTTCTATATTGTGA 59.419 34.615 0.00 0.00 0.00 3.58
5512 6479 7.201266 GCTTGCAAAAACGTTCTATATTGTGAG 60.201 37.037 0.00 6.29 0.00 3.51
5513 6480 7.428282 TGCAAAAACGTTCTATATTGTGAGA 57.572 32.000 0.00 0.00 0.00 3.27
5514 6481 8.039603 TGCAAAAACGTTCTATATTGTGAGAT 57.960 30.769 0.00 0.00 0.00 2.75
5515 6482 7.962373 TGCAAAAACGTTCTATATTGTGAGATG 59.038 33.333 0.00 0.00 0.00 2.90
5516 6483 7.429340 GCAAAAACGTTCTATATTGTGAGATGG 59.571 37.037 0.00 0.00 0.00 3.51
5517 6484 8.664798 CAAAAACGTTCTATATTGTGAGATGGA 58.335 33.333 0.00 0.00 0.00 3.41
5518 6485 8.425577 AAAACGTTCTATATTGTGAGATGGAG 57.574 34.615 0.00 0.00 0.00 3.86
5519 6486 6.090483 ACGTTCTATATTGTGAGATGGAGG 57.910 41.667 0.00 0.00 0.00 4.30
5520 6487 5.011125 ACGTTCTATATTGTGAGATGGAGGG 59.989 44.000 0.00 0.00 0.00 4.30
5521 6488 5.243954 CGTTCTATATTGTGAGATGGAGGGA 59.756 44.000 0.00 0.00 0.00 4.20
5522 6489 6.571344 CGTTCTATATTGTGAGATGGAGGGAG 60.571 46.154 0.00 0.00 0.00 4.30
5523 6490 5.970289 TCTATATTGTGAGATGGAGGGAGT 58.030 41.667 0.00 0.00 0.00 3.85
5524 6491 7.103745 TCTATATTGTGAGATGGAGGGAGTA 57.896 40.000 0.00 0.00 0.00 2.59
5781 6777 5.828328 GCTACCTGCATTTTTAAGATACCCT 59.172 40.000 0.00 0.00 42.31 4.34
5789 6785 6.417930 GCATTTTTAAGATACCCTTGAATCGC 59.582 38.462 0.00 0.00 36.34 4.58
5966 6969 9.857656 AATTTCCTTCTGATGATAGCAATTCTA 57.142 29.630 0.00 0.00 0.00 2.10
5969 6972 9.499479 TTCCTTCTGATGATAGCAATTCTATTC 57.501 33.333 0.00 0.00 38.09 1.75
6130 7136 6.419484 TGTTTGTCTCTTCCATTACTCTCA 57.581 37.500 0.00 0.00 0.00 3.27
6357 7364 4.689345 TCATCTGATATCAATCTGCTTGCG 59.311 41.667 6.90 0.00 34.66 4.85
6359 7366 2.806818 CTGATATCAATCTGCTTGCGCT 59.193 45.455 9.73 0.00 36.97 5.92
6505 7512 9.283768 GTTTTTATTGAATGTTCTTTGGGGATT 57.716 29.630 0.00 0.00 0.00 3.01
6552 7559 6.681777 AGATGTCAGGCTGTTTGTATTTTTC 58.318 36.000 15.27 0.00 0.00 2.29
6597 7604 3.625764 GGCATTTGCTCAATCATGCATTT 59.374 39.130 16.44 0.00 43.27 2.32
6598 7605 4.495679 GGCATTTGCTCAATCATGCATTTG 60.496 41.667 16.44 0.00 43.27 2.32
6661 7669 3.334583 TGCGAGATTTAGGCTCACTTT 57.665 42.857 0.00 0.00 32.67 2.66
6696 7706 6.093404 GGCAGTCTCCTTAATTTTAAGCAAC 58.907 40.000 4.82 3.31 38.99 4.17
6736 7751 5.361857 CAGGTTTGGGCTGATATTCAAAGAT 59.638 40.000 0.00 0.00 30.97 2.40
6766 7781 1.527034 ACATGCTTTGTGACGCTGAT 58.473 45.000 0.00 0.00 37.11 2.90
6790 7805 9.868277 GATACCAGATAATCCAGAATTAGACAG 57.132 37.037 0.00 0.00 33.38 3.51
6806 7821 7.842887 ATTAGACAGGGTCTTATCTTACTCC 57.157 40.000 3.98 0.00 40.28 3.85
6982 7997 8.295288 ACAGAAATGACTTTTAGAGATTGCTTG 58.705 33.333 0.00 0.00 0.00 4.01
7028 8043 4.383770 GGGCAAACCTAACACTCTAGCATA 60.384 45.833 0.00 0.00 35.85 3.14
7095 8110 1.113517 TCCCGTGCTCTATACAGCCC 61.114 60.000 0.00 0.00 38.80 5.19
7125 8140 5.722021 TGCATCTTTCTGTGACTACACTA 57.278 39.130 0.00 0.00 46.07 2.74
7152 8167 6.663093 TGCCACATAAAAGTCATATCTGGTTT 59.337 34.615 0.00 0.00 0.00 3.27
7172 8187 7.924541 TGGTTTACACAAATCTATTACCTCCT 58.075 34.615 0.00 0.00 0.00 3.69
7182 8197 9.640952 CAAATCTATTACCTCCTTCCCAAATTA 57.359 33.333 0.00 0.00 0.00 1.40
7183 8198 9.642343 AAATCTATTACCTCCTTCCCAAATTAC 57.358 33.333 0.00 0.00 0.00 1.89
7299 8314 7.039223 GGACGGAGGGAGTATATCTTTATGAAA 60.039 40.741 0.00 0.00 0.00 2.69
7342 8367 2.955660 CCTTTCTTGGTGCAAAGGTACA 59.044 45.455 4.69 0.00 42.62 2.90
7398 8425 2.328319 TGTACTACCTTCCACCGGTTT 58.672 47.619 2.97 0.00 35.98 3.27
7434 8465 3.173953 AGATTGATCTTGTTTGCCCCA 57.826 42.857 0.00 0.00 31.97 4.96
7467 8499 2.355756 CCAGGTTGACTATGAAATGGCG 59.644 50.000 0.00 0.00 0.00 5.69
7569 8601 2.579738 GTCGACTTCCAGAGCCCC 59.420 66.667 8.70 0.00 0.00 5.80
7637 8671 1.070134 CTTCCGTTCTCAGGTTGGTCA 59.930 52.381 0.00 0.00 0.00 4.02
7725 8763 3.065371 GGGATGATTTGTTAGGCTGTTCG 59.935 47.826 0.00 0.00 0.00 3.95
7746 8784 0.800300 GCTCGCAGCTGAGTGTAGAC 60.800 60.000 20.43 0.00 38.45 2.59
7772 8810 5.804979 GCATAAACATCGCAAGTGGTTTTAT 59.195 36.000 0.00 0.00 41.86 1.40
7774 8812 5.446143 AAACATCGCAAGTGGTTTTATGA 57.554 34.783 0.00 0.00 40.01 2.15
7961 9113 0.028505 CTCGCGATCCCAAATTGCTG 59.971 55.000 10.36 0.00 0.00 4.41
8048 9200 1.406539 CAGTTGGCATGTTAGGGCATC 59.593 52.381 0.00 0.00 40.74 3.91
8218 9376 1.283793 CTGCTGCAACTGGAAACCG 59.716 57.895 3.02 0.00 0.00 4.44
8262 9420 1.519455 CGACTCTTCCGATGGGTGC 60.519 63.158 0.00 0.00 33.83 5.01
8390 9548 0.250513 GGTGCGATTGAAGGAGGACT 59.749 55.000 0.00 0.00 0.00 3.85
8508 9666 4.612932 AATCGAGCAATTTCTCTTGAGC 57.387 40.909 3.60 0.00 0.00 4.26
8509 9667 3.044235 TCGAGCAATTTCTCTTGAGCA 57.956 42.857 3.60 0.00 0.00 4.26
8523 9681 0.187117 TGAGCATGTTTGGTTGGGGA 59.813 50.000 0.00 0.00 32.62 4.81
8540 9698 3.510360 TGGGGATAATTAGAGCTAGCGAC 59.490 47.826 9.55 7.96 0.00 5.19
8557 9715 5.344743 AGCGACTGAGAATTGAAGGAATA 57.655 39.130 0.00 0.00 0.00 1.75
8643 9801 3.772025 AGACTCGAGACTTCAATTCCCAT 59.228 43.478 21.68 0.00 0.00 4.00
8644 9802 4.223923 AGACTCGAGACTTCAATTCCCATT 59.776 41.667 21.68 0.00 0.00 3.16
8653 9811 9.143631 GAGACTTCAATTCCCATTGTTTTATTG 57.856 33.333 0.00 0.00 40.78 1.90
8675 9833 1.613630 GAGGAGGGGCAGGAGTTGA 60.614 63.158 0.00 0.00 0.00 3.18
8679 9837 0.693049 GAGGGGCAGGAGTTGAAAGA 59.307 55.000 0.00 0.00 0.00 2.52
8680 9838 0.695347 AGGGGCAGGAGTTGAAAGAG 59.305 55.000 0.00 0.00 0.00 2.85
8681 9839 0.693049 GGGGCAGGAGTTGAAAGAGA 59.307 55.000 0.00 0.00 0.00 3.10
8682 9840 1.073923 GGGGCAGGAGTTGAAAGAGAA 59.926 52.381 0.00 0.00 0.00 2.87
8683 9841 2.291217 GGGGCAGGAGTTGAAAGAGAAT 60.291 50.000 0.00 0.00 0.00 2.40
8684 9842 3.425659 GGGCAGGAGTTGAAAGAGAATT 58.574 45.455 0.00 0.00 0.00 2.17
8685 9843 3.192212 GGGCAGGAGTTGAAAGAGAATTG 59.808 47.826 0.00 0.00 0.00 2.32
8686 9844 3.823304 GGCAGGAGTTGAAAGAGAATTGT 59.177 43.478 0.00 0.00 0.00 2.71
8687 9845 4.279420 GGCAGGAGTTGAAAGAGAATTGTT 59.721 41.667 0.00 0.00 0.00 2.83
8688 9846 5.218139 GCAGGAGTTGAAAGAGAATTGTTG 58.782 41.667 0.00 0.00 0.00 3.33
8689 9847 5.221126 GCAGGAGTTGAAAGAGAATTGTTGT 60.221 40.000 0.00 0.00 0.00 3.32
8690 9848 6.017109 GCAGGAGTTGAAAGAGAATTGTTGTA 60.017 38.462 0.00 0.00 0.00 2.41
8691 9849 7.468631 GCAGGAGTTGAAAGAGAATTGTTGTAA 60.469 37.037 0.00 0.00 0.00 2.41
8692 9850 8.571336 CAGGAGTTGAAAGAGAATTGTTGTAAT 58.429 33.333 0.00 0.00 0.00 1.89
8693 9851 9.136323 AGGAGTTGAAAGAGAATTGTTGTAATT 57.864 29.630 0.00 0.00 0.00 1.40
8742 9900 7.881775 ACTTATGTTAATCTTTCATCCACCC 57.118 36.000 0.00 0.00 0.00 4.61
8743 9901 6.833933 ACTTATGTTAATCTTTCATCCACCCC 59.166 38.462 0.00 0.00 0.00 4.95
8744 9902 3.616219 TGTTAATCTTTCATCCACCCCG 58.384 45.455 0.00 0.00 0.00 5.73
8745 9903 2.341846 TAATCTTTCATCCACCCCGC 57.658 50.000 0.00 0.00 0.00 6.13
8746 9904 0.331278 AATCTTTCATCCACCCCGCA 59.669 50.000 0.00 0.00 0.00 5.69
8747 9905 0.552848 ATCTTTCATCCACCCCGCAT 59.447 50.000 0.00 0.00 0.00 4.73
8748 9906 1.208706 TCTTTCATCCACCCCGCATA 58.791 50.000 0.00 0.00 0.00 3.14
8749 9907 1.134220 TCTTTCATCCACCCCGCATAC 60.134 52.381 0.00 0.00 0.00 2.39
8750 9908 0.621082 TTTCATCCACCCCGCATACA 59.379 50.000 0.00 0.00 0.00 2.29
8751 9909 0.107410 TTCATCCACCCCGCATACAC 60.107 55.000 0.00 0.00 0.00 2.90
8752 9910 1.525995 CATCCACCCCGCATACACC 60.526 63.158 0.00 0.00 0.00 4.16
8753 9911 1.692749 ATCCACCCCGCATACACCT 60.693 57.895 0.00 0.00 0.00 4.00
8754 9912 1.279025 ATCCACCCCGCATACACCTT 61.279 55.000 0.00 0.00 0.00 3.50
8755 9913 0.618107 TCCACCCCGCATACACCTTA 60.618 55.000 0.00 0.00 0.00 2.69
8756 9914 0.472471 CCACCCCGCATACACCTTAT 59.528 55.000 0.00 0.00 0.00 1.73
8757 9915 1.133915 CCACCCCGCATACACCTTATT 60.134 52.381 0.00 0.00 0.00 1.40
8758 9916 2.650322 CACCCCGCATACACCTTATTT 58.350 47.619 0.00 0.00 0.00 1.40
8759 9917 2.616842 CACCCCGCATACACCTTATTTC 59.383 50.000 0.00 0.00 0.00 2.17
8760 9918 2.508300 ACCCCGCATACACCTTATTTCT 59.492 45.455 0.00 0.00 0.00 2.52
8761 9919 3.712733 ACCCCGCATACACCTTATTTCTA 59.287 43.478 0.00 0.00 0.00 2.10
8762 9920 4.202326 ACCCCGCATACACCTTATTTCTAG 60.202 45.833 0.00 0.00 0.00 2.43
8763 9921 4.202326 CCCCGCATACACCTTATTTCTAGT 60.202 45.833 0.00 0.00 0.00 2.57
8764 9922 5.365619 CCCGCATACACCTTATTTCTAGTT 58.634 41.667 0.00 0.00 0.00 2.24
8765 9923 6.463331 CCCCGCATACACCTTATTTCTAGTTA 60.463 42.308 0.00 0.00 0.00 2.24
8766 9924 6.645415 CCCGCATACACCTTATTTCTAGTTAG 59.355 42.308 0.00 0.00 0.00 2.34
8767 9925 7.208080 CCGCATACACCTTATTTCTAGTTAGT 58.792 38.462 0.00 0.00 0.00 2.24
8768 9926 7.709613 CCGCATACACCTTATTTCTAGTTAGTT 59.290 37.037 0.00 0.00 0.00 2.24
8769 9927 9.095065 CGCATACACCTTATTTCTAGTTAGTTT 57.905 33.333 0.00 0.00 0.00 2.66
8783 9941 8.718102 TCTAGTTAGTTTGACTAAATCATGGC 57.282 34.615 4.33 0.00 41.80 4.40
8784 9942 8.318412 TCTAGTTAGTTTGACTAAATCATGGCA 58.682 33.333 4.33 0.00 41.80 4.92
8785 9943 7.759489 AGTTAGTTTGACTAAATCATGGCAA 57.241 32.000 0.00 0.00 41.80 4.52
8786 9944 7.593825 AGTTAGTTTGACTAAATCATGGCAAC 58.406 34.615 0.00 0.00 41.80 4.17
8787 9945 7.230510 AGTTAGTTTGACTAAATCATGGCAACA 59.769 33.333 0.00 0.00 46.70 3.33
8789 9947 9.237187 TTAGTTTGACTAAATCATGGCAACATA 57.763 29.630 0.00 0.00 45.96 2.29
8840 9998 9.801873 AAAAATAAATATGAGGGAAATCACACG 57.198 29.630 0.00 0.00 30.46 4.49
8841 9999 4.900635 AAATATGAGGGAAATCACACGC 57.099 40.909 0.00 0.00 30.46 5.34
8842 10000 3.558931 ATATGAGGGAAATCACACGCA 57.441 42.857 0.00 0.00 30.46 5.24
8843 10001 2.198827 ATGAGGGAAATCACACGCAA 57.801 45.000 0.00 0.00 30.46 4.85
8844 10002 2.086869 ATGAGGGAAATCACACGCAAG 58.913 47.619 0.00 0.00 35.92 4.01
8845 10003 1.071542 TGAGGGAAATCACACGCAAGA 59.928 47.619 0.00 0.00 43.62 3.02
8846 10004 2.290260 TGAGGGAAATCACACGCAAGAT 60.290 45.455 0.00 0.00 43.62 2.40
8847 10005 2.086869 AGGGAAATCACACGCAAGATG 58.913 47.619 0.00 0.00 43.62 2.90
8848 10006 2.083774 GGGAAATCACACGCAAGATGA 58.916 47.619 0.00 0.00 43.62 2.92
8849 10007 2.684881 GGGAAATCACACGCAAGATGAT 59.315 45.455 0.00 0.00 44.52 2.45
8850 10008 3.876914 GGGAAATCACACGCAAGATGATA 59.123 43.478 0.00 0.00 42.80 2.15
8851 10009 4.516698 GGGAAATCACACGCAAGATGATAT 59.483 41.667 0.00 0.00 42.80 1.63
8852 10010 5.700832 GGGAAATCACACGCAAGATGATATA 59.299 40.000 0.00 0.00 42.80 0.86
8853 10011 6.372659 GGGAAATCACACGCAAGATGATATAT 59.627 38.462 0.00 0.00 42.80 0.86
8854 10012 7.549134 GGGAAATCACACGCAAGATGATATATA 59.451 37.037 0.00 0.00 42.80 0.86
8855 10013 9.102757 GGAAATCACACGCAAGATGATATATAT 57.897 33.333 0.00 0.00 42.80 0.86
8857 10015 9.657419 AAATCACACGCAAGATGATATATATCA 57.343 29.630 24.17 24.17 42.80 2.15
8871 10029 7.751732 TGATATATATCATCAAAAACTGCCGC 58.248 34.615 19.44 0.00 37.76 6.53
8872 10030 3.715628 ATATCATCAAAAACTGCCGCC 57.284 42.857 0.00 0.00 0.00 6.13
8873 10031 0.171007 ATCATCAAAAACTGCCGCCG 59.829 50.000 0.00 0.00 0.00 6.46
8874 10032 0.886938 TCATCAAAAACTGCCGCCGA 60.887 50.000 0.00 0.00 0.00 5.54
8875 10033 0.171007 CATCAAAAACTGCCGCCGAT 59.829 50.000 0.00 0.00 0.00 4.18
8876 10034 0.887933 ATCAAAAACTGCCGCCGATT 59.112 45.000 0.00 0.00 0.00 3.34
8877 10035 0.039617 TCAAAAACTGCCGCCGATTG 60.040 50.000 0.00 0.00 0.00 2.67
8878 10036 0.039617 CAAAAACTGCCGCCGATTGA 60.040 50.000 0.00 0.00 0.00 2.57
8879 10037 0.039527 AAAAACTGCCGCCGATTGAC 60.040 50.000 0.00 0.00 0.00 3.18
8880 10038 1.862602 AAAACTGCCGCCGATTGACC 61.863 55.000 0.00 0.00 0.00 4.02
8882 10040 4.812476 CTGCCGCCGATTGACCGA 62.812 66.667 0.00 0.00 0.00 4.69
8883 10041 4.380781 TGCCGCCGATTGACCGAA 62.381 61.111 0.00 0.00 0.00 4.30
8884 10042 3.122323 GCCGCCGATTGACCGAAA 61.122 61.111 0.00 0.00 0.00 3.46
8885 10043 3.089784 CCGCCGATTGACCGAAAG 58.910 61.111 0.00 0.00 0.00 2.62
8886 10044 1.447140 CCGCCGATTGACCGAAAGA 60.447 57.895 0.00 0.00 0.00 2.52
8887 10045 1.421410 CCGCCGATTGACCGAAAGAG 61.421 60.000 0.00 0.00 0.00 2.85
8888 10046 1.716172 GCCGATTGACCGAAAGAGC 59.284 57.895 0.00 0.00 0.00 4.09
8889 10047 1.999051 CCGATTGACCGAAAGAGCG 59.001 57.895 0.00 0.00 0.00 5.03
8896 10054 3.889227 CCGAAAGAGCGGCATTCA 58.111 55.556 1.45 0.00 45.38 2.57
8897 10055 2.397751 CCGAAAGAGCGGCATTCAT 58.602 52.632 1.45 0.00 45.38 2.57
8898 10056 0.734889 CCGAAAGAGCGGCATTCATT 59.265 50.000 1.45 0.00 45.38 2.57
8899 10057 1.268234 CCGAAAGAGCGGCATTCATTC 60.268 52.381 1.45 0.00 45.38 2.67
8900 10058 1.667724 CGAAAGAGCGGCATTCATTCT 59.332 47.619 1.45 0.00 0.00 2.40
8901 10059 2.096496 CGAAAGAGCGGCATTCATTCTT 59.904 45.455 1.45 0.00 0.00 2.52
8902 10060 3.426695 CGAAAGAGCGGCATTCATTCTTT 60.427 43.478 11.08 11.08 39.91 2.52
8903 10061 4.201812 CGAAAGAGCGGCATTCATTCTTTA 60.202 41.667 11.20 0.00 37.99 1.85
8904 10062 5.504665 CGAAAGAGCGGCATTCATTCTTTAT 60.505 40.000 11.20 0.00 37.99 1.40
8905 10063 5.841957 AAGAGCGGCATTCATTCTTTATT 57.158 34.783 1.45 0.00 0.00 1.40
8906 10064 5.179045 AGAGCGGCATTCATTCTTTATTG 57.821 39.130 1.45 0.00 0.00 1.90
8907 10065 4.641989 AGAGCGGCATTCATTCTTTATTGT 59.358 37.500 1.45 0.00 0.00 2.71
8908 10066 4.925068 AGCGGCATTCATTCTTTATTGTC 58.075 39.130 1.45 0.00 0.00 3.18
8909 10067 4.641989 AGCGGCATTCATTCTTTATTGTCT 59.358 37.500 1.45 0.00 0.00 3.41
8910 10068 5.126061 AGCGGCATTCATTCTTTATTGTCTT 59.874 36.000 1.45 0.00 0.00 3.01
8911 10069 5.807011 GCGGCATTCATTCTTTATTGTCTTT 59.193 36.000 0.00 0.00 0.00 2.52
8912 10070 6.972328 GCGGCATTCATTCTTTATTGTCTTTA 59.028 34.615 0.00 0.00 0.00 1.85
8913 10071 7.649306 GCGGCATTCATTCTTTATTGTCTTTAT 59.351 33.333 0.00 0.00 0.00 1.40
8914 10072 9.173939 CGGCATTCATTCTTTATTGTCTTTATC 57.826 33.333 0.00 0.00 0.00 1.75
8923 10081 8.251750 TCTTTATTGTCTTTATCACCTTGACG 57.748 34.615 0.00 0.00 0.00 4.35
8924 10082 7.876068 TCTTTATTGTCTTTATCACCTTGACGT 59.124 33.333 0.00 0.00 0.00 4.34
8925 10083 7.972832 TTATTGTCTTTATCACCTTGACGTT 57.027 32.000 0.00 0.00 0.00 3.99
8926 10084 5.666969 TTGTCTTTATCACCTTGACGTTG 57.333 39.130 0.00 0.00 0.00 4.10
8927 10085 4.699637 TGTCTTTATCACCTTGACGTTGT 58.300 39.130 0.00 0.00 0.00 3.32
8928 10086 4.748102 TGTCTTTATCACCTTGACGTTGTC 59.252 41.667 0.00 0.00 0.00 3.18
8929 10087 4.748102 GTCTTTATCACCTTGACGTTGTCA 59.252 41.667 0.00 0.00 41.09 3.58
8930 10088 4.988540 TCTTTATCACCTTGACGTTGTCAG 59.011 41.667 0.00 0.00 43.69 3.51
8931 10089 4.594123 TTATCACCTTGACGTTGTCAGA 57.406 40.909 0.00 0.00 43.69 3.27
8932 10090 2.971660 TCACCTTGACGTTGTCAGAA 57.028 45.000 0.00 0.00 43.69 3.02
8933 10091 3.469008 TCACCTTGACGTTGTCAGAAT 57.531 42.857 0.00 0.00 43.69 2.40
8934 10092 3.804036 TCACCTTGACGTTGTCAGAATT 58.196 40.909 0.00 0.00 43.69 2.17
8935 10093 3.807622 TCACCTTGACGTTGTCAGAATTC 59.192 43.478 0.00 0.00 43.69 2.17
8936 10094 3.559655 CACCTTGACGTTGTCAGAATTCA 59.440 43.478 8.44 0.00 43.69 2.57
8937 10095 3.560068 ACCTTGACGTTGTCAGAATTCAC 59.440 43.478 8.44 0.00 43.69 3.18
8938 10096 3.058914 CCTTGACGTTGTCAGAATTCACC 60.059 47.826 8.44 0.00 43.69 4.02
8939 10097 3.469008 TGACGTTGTCAGAATTCACCT 57.531 42.857 8.44 0.00 37.67 4.00
8940 10098 3.390135 TGACGTTGTCAGAATTCACCTC 58.610 45.455 8.44 0.00 37.67 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.709141 AGGTTCCTTAGAGATGAGCTTCC 59.291 47.826 0.00 0.00 0.00 3.46
30 31 9.904647 GTTATCGCAAATATAAACTTAACGTGA 57.095 29.630 0.00 0.00 0.00 4.35
40 41 8.783093 CCATCCTCAAGTTATCGCAAATATAAA 58.217 33.333 0.00 0.00 0.00 1.40
44 45 5.063204 CCCATCCTCAAGTTATCGCAAATA 58.937 41.667 0.00 0.00 0.00 1.40
45 46 3.885297 CCCATCCTCAAGTTATCGCAAAT 59.115 43.478 0.00 0.00 0.00 2.32
47 48 2.917933 CCCATCCTCAAGTTATCGCAA 58.082 47.619 0.00 0.00 0.00 4.85
49 50 1.230324 GCCCATCCTCAAGTTATCGC 58.770 55.000 0.00 0.00 0.00 4.58
50 51 1.068588 TCGCCCATCCTCAAGTTATCG 59.931 52.381 0.00 0.00 0.00 2.92
51 52 2.103263 AGTCGCCCATCCTCAAGTTATC 59.897 50.000 0.00 0.00 0.00 1.75
52 53 2.119495 AGTCGCCCATCCTCAAGTTAT 58.881 47.619 0.00 0.00 0.00 1.89
103 107 5.469421 CCAACATCAGGCTTTTATGCAAAAA 59.531 36.000 0.00 0.00 33.33 1.94
104 108 4.996122 CCAACATCAGGCTTTTATGCAAAA 59.004 37.500 0.00 0.00 32.73 2.44
105 109 4.040217 ACCAACATCAGGCTTTTATGCAAA 59.960 37.500 0.00 0.00 34.04 3.68
107 111 3.164268 ACCAACATCAGGCTTTTATGCA 58.836 40.909 0.00 0.00 34.04 3.96
162 178 5.245531 TGAGATTGTAAAGGCACGAAGATT 58.754 37.500 0.00 0.00 0.00 2.40
185 201 7.215719 TCGTCGATGATATTATGAAGGACTT 57.784 36.000 2.39 0.00 0.00 3.01
215 233 6.415573 GTCTCCTAAACAATACACCCTCAAT 58.584 40.000 0.00 0.00 0.00 2.57
227 245 2.701951 AGGGTGTTCGTCTCCTAAACAA 59.298 45.455 0.00 0.00 34.90 2.83
238 256 4.411256 TTTTACTCTTGAGGGTGTTCGT 57.589 40.909 2.55 0.00 0.00 3.85
260 278 6.665992 TCTACCGAGTGATTATGCCTTATT 57.334 37.500 0.00 0.00 0.00 1.40
266 284 5.847670 GGATTTCTACCGAGTGATTATGC 57.152 43.478 0.00 0.00 0.00 3.14
398 418 0.400213 GGACAACCACCACAGATCCA 59.600 55.000 0.00 0.00 35.97 3.41
413 433 2.176798 AGGTGATGAAAAGGGTTGGACA 59.823 45.455 0.00 0.00 0.00 4.02
431 451 0.969894 CACCGTCCAGAGAAGAAGGT 59.030 55.000 0.00 0.00 45.45 3.50
464 484 0.031721 AGAAAGTCACCGGTCACGAC 59.968 55.000 2.59 10.16 44.60 4.34
500 547 4.079253 ACACCGTTGAAGGCAGAATAAAT 58.921 39.130 0.00 0.00 33.69 1.40
510 557 1.336755 CCTCCAAAACACCGTTGAAGG 59.663 52.381 0.00 0.00 37.30 3.46
513 560 1.670791 GACCTCCAAAACACCGTTGA 58.329 50.000 0.00 0.00 0.00 3.18
648 695 9.823647 CTTTCTGACCAACATAATACAGAGTAT 57.176 33.333 0.00 0.00 36.13 2.12
649 696 8.812972 ACTTTCTGACCAACATAATACAGAGTA 58.187 33.333 0.00 0.00 36.13 2.59
650 697 7.680730 ACTTTCTGACCAACATAATACAGAGT 58.319 34.615 0.00 0.00 36.13 3.24
651 698 7.278868 GGACTTTCTGACCAACATAATACAGAG 59.721 40.741 0.00 0.00 36.13 3.35
652 699 7.103641 GGACTTTCTGACCAACATAATACAGA 58.896 38.462 0.00 0.00 33.53 3.41
653 700 6.036083 CGGACTTTCTGACCAACATAATACAG 59.964 42.308 0.00 0.00 0.00 2.74
654 701 5.872617 CGGACTTTCTGACCAACATAATACA 59.127 40.000 0.00 0.00 0.00 2.29
655 702 5.220605 GCGGACTTTCTGACCAACATAATAC 60.221 44.000 0.00 0.00 0.00 1.89
661 708 0.878523 CGCGGACTTTCTGACCAACA 60.879 55.000 0.00 0.00 0.00 3.33
665 712 0.038526 TCTTCGCGGACTTTCTGACC 60.039 55.000 6.13 0.00 0.00 4.02
675 722 7.331440 TGTTTTACTTAATTATGTCTTCGCGGA 59.669 33.333 6.13 0.00 0.00 5.54
722 769 2.167487 GGTTTTCTCACTGCCCAAAACA 59.833 45.455 8.05 0.00 39.48 2.83
735 782 4.277423 TCCATGACTTTTTCGGGTTTTCTC 59.723 41.667 0.00 0.00 0.00 2.87
736 783 4.211920 TCCATGACTTTTTCGGGTTTTCT 58.788 39.130 0.00 0.00 0.00 2.52
739 786 3.069016 GGTTCCATGACTTTTTCGGGTTT 59.931 43.478 0.00 0.00 0.00 3.27
973 1187 3.499021 GGTAAGCTAGGGTTTGGGTTCAA 60.499 47.826 0.00 0.00 0.00 2.69
1252 1930 2.362077 CAACACAGAAGTCCCAAAAGGG 59.638 50.000 0.00 0.00 35.67 3.95
1340 2018 5.233689 AGAGTAAACACAAACAGCGAGTTAC 59.766 40.000 0.00 0.00 40.26 2.50
1412 2091 2.173126 TCCAGGGGCAAATAAATGGG 57.827 50.000 0.00 0.00 0.00 4.00
1475 2154 5.636903 TCATTCTTATTTAGCCCAGCTCT 57.363 39.130 0.00 0.00 40.44 4.09
1478 2157 5.273944 CGTTTCATTCTTATTTAGCCCAGC 58.726 41.667 0.00 0.00 0.00 4.85
1546 2308 6.801539 TTGCTGACACCTAACAGAAATTAG 57.198 37.500 0.00 0.00 36.38 1.73
1595 2357 1.619827 CAAAGATTTTCCAGGCTGCCA 59.380 47.619 22.65 0.00 0.00 4.92
1832 2594 1.265462 CGCGCTCTCGATCAACTAGC 61.265 60.000 5.56 0.00 38.10 3.42
1996 2759 7.201732 CCAGACAGATAAATGGGTGTCAATAAC 60.202 40.741 4.30 0.00 41.52 1.89
2058 2821 3.712091 AGGCGTTTCTAAGTATCGAGG 57.288 47.619 0.00 0.00 0.00 4.63
2062 2825 7.424001 TCTTTAGCTAGGCGTTTCTAAGTATC 58.576 38.462 0.00 0.00 0.00 2.24
2127 2890 4.202430 GGAGTGTCCTTAACTTTCTTCCCA 60.202 45.833 0.00 0.00 32.53 4.37
2258 3021 7.601886 ACACACAAAACATTCAAGATTGTTCAA 59.398 29.630 9.86 0.00 34.84 2.69
2285 3048 3.430929 GCATACCTCGGCCATTATCCTAG 60.431 52.174 2.24 0.00 0.00 3.02
2441 3204 8.094798 TCCCGATAACACTGCATTAAAATATC 57.905 34.615 0.00 0.00 0.00 1.63
2458 3221 7.147983 CCTCAAACCATATTTTGTTCCCGATAA 60.148 37.037 0.93 0.00 37.66 1.75
2596 3359 7.041848 CCATTGTTTCTTTCAAAAGGAATGGAC 60.042 37.037 19.03 4.57 38.89 4.02
2946 3710 7.672738 CGTAAAACATAACTGTACATGTCTCC 58.327 38.462 0.00 0.00 34.32 3.71
2959 3723 9.012448 ACAAAGTTTACAAGCGTAAAACATAAC 57.988 29.630 10.76 0.00 46.46 1.89
3457 4234 5.778241 TGTGAGGGACATTTCTGAGTAGTAA 59.222 40.000 0.00 0.00 0.00 2.24
3745 4522 6.317893 GGACACAAAGTACCAGAGAAGAAAAA 59.682 38.462 0.00 0.00 0.00 1.94
3764 4541 9.905713 AGAAGATTATTAATTTAGCAGGACACA 57.094 29.630 0.00 0.00 0.00 3.72
3895 4674 1.822990 AGCAAATCAACAGCAGATGGG 59.177 47.619 0.00 0.00 0.00 4.00
4051 4830 1.654220 CACGAAAACCCCAGCACAG 59.346 57.895 0.00 0.00 0.00 3.66
4215 4995 7.593825 ACTCAAAACCATGTATAAAGCAAGAC 58.406 34.615 0.00 0.00 0.00 3.01
4403 5185 3.172339 CCCATTTCCCCTGTCAAATTGA 58.828 45.455 0.00 0.00 0.00 2.57
4953 5739 9.082313 AGACAGAACATGTTTTCAGGATATTTT 57.918 29.630 13.36 0.00 44.17 1.82
4954 5740 8.641498 AGACAGAACATGTTTTCAGGATATTT 57.359 30.769 13.36 0.00 44.17 1.40
5083 5873 5.556915 TCGGCTTCTCTATTCAAAAGGAAA 58.443 37.500 0.00 0.00 39.39 3.13
5095 5885 5.979288 AAAACTAGTTCTCGGCTTCTCTA 57.021 39.130 8.95 0.00 0.00 2.43
5184 5975 9.936329 ACAAAATAAACTATCCAATCCACCTAT 57.064 29.630 0.00 0.00 0.00 2.57
5401 6368 2.028420 TATCTGCCATCACACACTGC 57.972 50.000 0.00 0.00 0.00 4.40
5450 6417 7.699566 TGCAAAAACGTCTTATATTATGGGAC 58.300 34.615 0.00 0.00 0.00 4.46
5451 6418 7.867305 TGCAAAAACGTCTTATATTATGGGA 57.133 32.000 0.00 0.00 0.00 4.37
5452 6419 7.167468 GCTTGCAAAAACGTCTTATATTATGGG 59.833 37.037 0.00 0.00 0.00 4.00
5453 6420 7.915397 AGCTTGCAAAAACGTCTTATATTATGG 59.085 33.333 0.00 0.00 0.00 2.74
5454 6421 8.841444 AGCTTGCAAAAACGTCTTATATTATG 57.159 30.769 0.00 0.00 0.00 1.90
5456 6423 9.763465 GTTAGCTTGCAAAAACGTCTTATATTA 57.237 29.630 0.00 0.00 0.00 0.98
5457 6424 8.293867 TGTTAGCTTGCAAAAACGTCTTATATT 58.706 29.630 0.00 0.00 0.00 1.28
5458 6425 7.812648 TGTTAGCTTGCAAAAACGTCTTATAT 58.187 30.769 0.00 0.00 0.00 0.86
5459 6426 7.192148 TGTTAGCTTGCAAAAACGTCTTATA 57.808 32.000 0.00 0.00 0.00 0.98
5460 6427 6.067263 TGTTAGCTTGCAAAAACGTCTTAT 57.933 33.333 0.00 0.00 0.00 1.73
5461 6428 5.487153 TGTTAGCTTGCAAAAACGTCTTA 57.513 34.783 0.00 0.00 0.00 2.10
5462 6429 4.364415 TGTTAGCTTGCAAAAACGTCTT 57.636 36.364 0.00 0.00 0.00 3.01
5463 6430 4.568152 ATGTTAGCTTGCAAAAACGTCT 57.432 36.364 0.00 0.00 0.00 4.18
5464 6431 5.975138 CTATGTTAGCTTGCAAAAACGTC 57.025 39.130 13.85 0.43 0.00 4.34
5478 6445 6.142817 AGAACGTTTTTGCAAGCTATGTTAG 58.857 36.000 0.46 0.00 0.00 2.34
5479 6446 6.067263 AGAACGTTTTTGCAAGCTATGTTA 57.933 33.333 0.46 0.00 0.00 2.41
5480 6447 4.932146 AGAACGTTTTTGCAAGCTATGTT 58.068 34.783 0.46 12.21 0.00 2.71
5481 6448 4.568152 AGAACGTTTTTGCAAGCTATGT 57.432 36.364 0.46 0.00 0.00 2.29
5482 6449 8.736742 CAATATAGAACGTTTTTGCAAGCTATG 58.263 33.333 0.46 0.00 0.00 2.23
5483 6450 8.458843 ACAATATAGAACGTTTTTGCAAGCTAT 58.541 29.630 0.46 4.78 0.00 2.97
5484 6451 7.748683 CACAATATAGAACGTTTTTGCAAGCTA 59.251 33.333 0.46 0.00 0.00 3.32
5485 6452 6.582295 CACAATATAGAACGTTTTTGCAAGCT 59.418 34.615 0.46 0.00 0.00 3.74
5486 6453 6.580791 TCACAATATAGAACGTTTTTGCAAGC 59.419 34.615 0.46 0.00 0.00 4.01
5487 6454 8.015087 TCTCACAATATAGAACGTTTTTGCAAG 58.985 33.333 0.46 4.20 0.00 4.01
5488 6455 7.866729 TCTCACAATATAGAACGTTTTTGCAA 58.133 30.769 0.46 0.00 0.00 4.08
5489 6456 7.428282 TCTCACAATATAGAACGTTTTTGCA 57.572 32.000 0.46 0.00 0.00 4.08
5490 6457 7.429340 CCATCTCACAATATAGAACGTTTTTGC 59.571 37.037 0.46 0.00 0.00 3.68
5491 6458 8.664798 TCCATCTCACAATATAGAACGTTTTTG 58.335 33.333 0.46 4.97 0.00 2.44
5492 6459 8.786826 TCCATCTCACAATATAGAACGTTTTT 57.213 30.769 0.46 0.00 0.00 1.94
5493 6460 7.495934 CCTCCATCTCACAATATAGAACGTTTT 59.504 37.037 0.46 0.00 0.00 2.43
5494 6461 6.986817 CCTCCATCTCACAATATAGAACGTTT 59.013 38.462 0.46 0.00 0.00 3.60
5495 6462 6.463049 CCCTCCATCTCACAATATAGAACGTT 60.463 42.308 0.00 0.00 0.00 3.99
5496 6463 5.011125 CCCTCCATCTCACAATATAGAACGT 59.989 44.000 0.00 0.00 0.00 3.99
5497 6464 5.243954 TCCCTCCATCTCACAATATAGAACG 59.756 44.000 0.00 0.00 0.00 3.95
5498 6465 6.268847 ACTCCCTCCATCTCACAATATAGAAC 59.731 42.308 0.00 0.00 0.00 3.01
5499 6466 6.385443 ACTCCCTCCATCTCACAATATAGAA 58.615 40.000 0.00 0.00 0.00 2.10
5500 6467 5.970289 ACTCCCTCCATCTCACAATATAGA 58.030 41.667 0.00 0.00 0.00 1.98
5501 6468 6.951198 ACTACTCCCTCCATCTCACAATATAG 59.049 42.308 0.00 0.00 0.00 1.31
5502 6469 6.864421 ACTACTCCCTCCATCTCACAATATA 58.136 40.000 0.00 0.00 0.00 0.86
5503 6470 5.721225 ACTACTCCCTCCATCTCACAATAT 58.279 41.667 0.00 0.00 0.00 1.28
5504 6471 5.144159 ACTACTCCCTCCATCTCACAATA 57.856 43.478 0.00 0.00 0.00 1.90
5505 6472 4.000928 ACTACTCCCTCCATCTCACAAT 57.999 45.455 0.00 0.00 0.00 2.71
5506 6473 3.474798 ACTACTCCCTCCATCTCACAA 57.525 47.619 0.00 0.00 0.00 3.33
5507 6474 3.528078 ACTACTACTCCCTCCATCTCACA 59.472 47.826 0.00 0.00 0.00 3.58
5508 6475 4.173290 ACTACTACTCCCTCCATCTCAC 57.827 50.000 0.00 0.00 0.00 3.51
5509 6476 4.883021 AACTACTACTCCCTCCATCTCA 57.117 45.455 0.00 0.00 0.00 3.27
5510 6477 7.506261 TGAATAAACTACTACTCCCTCCATCTC 59.494 40.741 0.00 0.00 0.00 2.75
5511 6478 7.363031 TGAATAAACTACTACTCCCTCCATCT 58.637 38.462 0.00 0.00 0.00 2.90
5512 6479 7.598759 TGAATAAACTACTACTCCCTCCATC 57.401 40.000 0.00 0.00 0.00 3.51
5513 6480 7.989947 TTGAATAAACTACTACTCCCTCCAT 57.010 36.000 0.00 0.00 0.00 3.41
5514 6481 7.622081 TGATTGAATAAACTACTACTCCCTCCA 59.378 37.037 0.00 0.00 0.00 3.86
5515 6482 8.019656 TGATTGAATAAACTACTACTCCCTCC 57.980 38.462 0.00 0.00 0.00 4.30
5553 6520 6.370994 AGCAGAAATCTAACAGACACTTCATG 59.629 38.462 0.00 0.00 0.00 3.07
5688 6658 7.946381 TGCAAATTCATAAGGGTGTACATTA 57.054 32.000 0.00 0.00 0.00 1.90
5781 6777 6.757897 AAATCAGTAAATGGAGCGATTCAA 57.242 33.333 0.00 0.00 0.00 2.69
5911 6914 2.386661 TGAATCTTCTCGGCAAGGAC 57.613 50.000 0.00 0.00 0.00 3.85
6130 7136 6.704056 TCCAACTAAAAGGAAGAGGAAGAT 57.296 37.500 0.00 0.00 0.00 2.40
6357 7364 1.470494 GCTTAAGGGCTGACTGAAAGC 59.530 52.381 4.29 0.00 37.60 3.51
6359 7366 2.106511 ACTGCTTAAGGGCTGACTGAAA 59.893 45.455 4.29 0.00 35.59 2.69
6505 7512 3.244078 ACGCTCAAACTAGACATCACCAA 60.244 43.478 0.00 0.00 0.00 3.67
6552 7559 5.242393 CCCTGATTCAAAACATAGCCATAGG 59.758 44.000 0.00 0.00 0.00 2.57
6597 7604 6.207221 ACATCAACATTCAACAAGCACTATCA 59.793 34.615 0.00 0.00 0.00 2.15
6598 7605 6.615088 ACATCAACATTCAACAAGCACTATC 58.385 36.000 0.00 0.00 0.00 2.08
6661 7669 1.628846 GGAGACTGCCCTAAGTTTCCA 59.371 52.381 8.58 0.00 46.12 3.53
6696 7706 5.291614 CCAAACCTGTTCTTTCACACAAATG 59.708 40.000 0.00 0.00 0.00 2.32
6736 7751 7.061673 GCGTCACAAAGCATGTTTATAAATCAA 59.938 33.333 0.31 0.00 41.46 2.57
6745 7760 1.675483 TCAGCGTCACAAAGCATGTTT 59.325 42.857 0.00 0.00 41.46 2.83
6756 7771 4.238514 GGATTATCTGGTATCAGCGTCAC 58.761 47.826 0.00 0.00 40.69 3.67
6766 7781 7.235606 CCCTGTCTAATTCTGGATTATCTGGTA 59.764 40.741 11.84 0.00 30.10 3.25
6790 7805 6.487299 AATCACTGGAGTAAGATAAGACCC 57.513 41.667 0.00 0.00 0.00 4.46
6934 7949 7.447238 TCTGTCACTTCCTCCGAATTTATTTTT 59.553 33.333 0.00 0.00 0.00 1.94
6982 7997 0.110056 CCTGTTCAACATGCTGCGTC 60.110 55.000 0.00 0.00 0.00 5.19
7028 8043 6.054295 TGCTTTCATGCTTTGGTTTATGTTT 58.946 32.000 0.00 0.00 0.00 2.83
7095 8110 6.906659 AGTCACAGAAAGATGCAAAACTATG 58.093 36.000 0.00 0.00 0.00 2.23
7125 8140 5.824624 CCAGATATGACTTTTATGTGGCAGT 59.175 40.000 0.00 0.00 34.76 4.40
7152 8167 6.674861 TGGGAAGGAGGTAATAGATTTGTGTA 59.325 38.462 0.00 0.00 0.00 2.90
7172 8187 9.362151 ACAAATCTAAGACAAGTAATTTGGGAA 57.638 29.630 9.60 0.00 41.25 3.97
7237 8252 9.788889 TGTCTTAGATTTGTCTAGATACGGATA 57.211 33.333 0.00 0.00 0.00 2.59
7238 8253 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
7239 8254 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
7240 8255 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
7247 8262 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
7248 8263 7.549488 CCCGAATTACTTGTCTTAGATTTGTCT 59.451 37.037 0.00 0.00 0.00 3.41
7249 8264 7.548075 TCCCGAATTACTTGTCTTAGATTTGTC 59.452 37.037 0.00 0.00 0.00 3.18
7250 8265 7.333672 GTCCCGAATTACTTGTCTTAGATTTGT 59.666 37.037 0.00 0.00 0.00 2.83
7251 8266 7.464178 CGTCCCGAATTACTTGTCTTAGATTTG 60.464 40.741 0.00 0.00 0.00 2.32
7252 8267 6.534079 CGTCCCGAATTACTTGTCTTAGATTT 59.466 38.462 0.00 0.00 0.00 2.17
7253 8268 6.040878 CGTCCCGAATTACTTGTCTTAGATT 58.959 40.000 0.00 0.00 0.00 2.40
7254 8269 5.451520 CCGTCCCGAATTACTTGTCTTAGAT 60.452 44.000 0.00 0.00 0.00 1.98
7255 8270 4.142315 CCGTCCCGAATTACTTGTCTTAGA 60.142 45.833 0.00 0.00 0.00 2.10
7342 8367 1.700042 GCCGGGATTCAGGACTGGAT 61.700 60.000 2.18 0.00 32.23 3.41
7389 8416 3.484557 CGATAACAAATCGAAACCGGTGG 60.485 47.826 8.52 0.00 43.59 4.61
7398 8425 9.529325 AAGATCAATCTTACGATAACAAATCGA 57.471 29.630 13.78 0.00 44.80 3.59
7467 8499 0.179037 TCTGCATGGCATACTCCAGC 60.179 55.000 0.00 0.00 39.89 4.85
7569 8601 3.424433 GGATGAACCTAAACACGAAAGCG 60.424 47.826 0.00 0.00 38.50 4.68
7684 8718 2.835156 CCCGGTAACAATGGGGAAAATT 59.165 45.455 0.00 0.00 42.59 1.82
7689 8724 4.583431 TCCCGGTAACAATGGGGA 57.417 55.556 0.00 0.00 46.31 4.81
7746 8784 2.162208 ACCACTTGCGATGTTTATGCTG 59.838 45.455 0.00 0.00 0.00 4.41
7772 8810 2.083774 CCTCAATTACAGCGGCTTTCA 58.916 47.619 0.00 0.00 0.00 2.69
7774 8812 1.271926 ACCCTCAATTACAGCGGCTTT 60.272 47.619 0.00 0.00 0.00 3.51
7808 8846 4.013050 TCCAGAATGTTTTCACACACACA 58.987 39.130 0.00 0.00 35.03 3.72
7809 8847 4.630894 TCCAGAATGTTTTCACACACAC 57.369 40.909 0.00 0.00 35.03 3.82
7961 9113 0.106894 GATGAGATCAACGGTCCCCC 59.893 60.000 0.00 0.00 0.00 5.40
7968 9120 6.338146 TGGGTAACTTTAGATGAGATCAACG 58.662 40.000 0.00 0.00 0.00 4.10
8048 9200 0.321564 TTTGATGGACAGCGTGGGAG 60.322 55.000 0.00 0.00 0.00 4.30
8052 9204 0.110238 CCGTTTTGATGGACAGCGTG 60.110 55.000 0.00 0.00 0.00 5.34
8054 9206 2.539003 TCCGTTTTGATGGACAGCG 58.461 52.632 0.00 0.00 0.00 5.18
8158 9310 2.110967 ATGCAGCATCACTCGCCAC 61.111 57.895 0.52 0.00 0.00 5.01
8159 9311 2.110352 CATGCAGCATCACTCGCCA 61.110 57.895 4.38 0.00 0.00 5.69
8164 9316 1.107538 GCCATCCATGCAGCATCACT 61.108 55.000 4.38 0.00 0.00 3.41
8218 9376 2.649129 GCAACACCTGCCAATCCCC 61.649 63.158 0.00 0.00 46.13 4.81
8262 9420 2.606961 TTTCACAGCAAGAGCCGCG 61.607 57.895 0.00 0.00 43.56 6.46
8273 9431 2.253452 GCAGCAGCCGTTTCACAG 59.747 61.111 0.00 0.00 33.58 3.66
8390 9548 2.028567 TCTGTCATCACAATGCCACGTA 60.029 45.455 0.00 0.00 32.58 3.57
8450 9608 5.731599 CTAAACTAGCTGATTTCTGCAGG 57.268 43.478 15.13 0.00 42.33 4.85
8490 9648 3.126514 ACATGCTCAAGAGAAATTGCTCG 59.873 43.478 7.84 0.00 39.87 5.03
8507 9665 4.486125 AATTATCCCCAACCAAACATGC 57.514 40.909 0.00 0.00 0.00 4.06
8508 9666 6.461509 GCTCTAATTATCCCCAACCAAACATG 60.462 42.308 0.00 0.00 0.00 3.21
8509 9667 5.598417 GCTCTAATTATCCCCAACCAAACAT 59.402 40.000 0.00 0.00 0.00 2.71
8523 9681 6.885952 TTCTCAGTCGCTAGCTCTAATTAT 57.114 37.500 13.93 0.00 0.00 1.28
8540 9698 6.568869 AGTCTCGTATTCCTTCAATTCTCAG 58.431 40.000 0.00 0.00 0.00 3.35
8597 9755 9.599056 TCTCATGACTATCCTCTTATGAATTCT 57.401 33.333 7.05 0.00 0.00 2.40
8626 9784 5.376854 AAACAATGGGAATTGAAGTCTCG 57.623 39.130 5.49 0.00 35.60 4.04
8643 9801 4.662278 CCCCTCCTCTGTCAATAAAACAA 58.338 43.478 0.00 0.00 0.00 2.83
8644 9802 3.561313 GCCCCTCCTCTGTCAATAAAACA 60.561 47.826 0.00 0.00 0.00 2.83
8653 9811 2.039624 TCCTGCCCCTCCTCTGTC 59.960 66.667 0.00 0.00 0.00 3.51
8716 9874 9.403583 GGGTGGATGAAAGATTAACATAAGTTA 57.596 33.333 0.00 0.00 39.15 2.24
8717 9875 7.342026 GGGGTGGATGAAAGATTAACATAAGTT 59.658 37.037 0.00 0.00 41.74 2.66
8718 9876 6.833933 GGGGTGGATGAAAGATTAACATAAGT 59.166 38.462 0.00 0.00 0.00 2.24
8719 9877 6.017109 CGGGGTGGATGAAAGATTAACATAAG 60.017 42.308 0.00 0.00 0.00 1.73
8720 9878 5.825679 CGGGGTGGATGAAAGATTAACATAA 59.174 40.000 0.00 0.00 0.00 1.90
8721 9879 5.373222 CGGGGTGGATGAAAGATTAACATA 58.627 41.667 0.00 0.00 0.00 2.29
8722 9880 4.207165 CGGGGTGGATGAAAGATTAACAT 58.793 43.478 0.00 0.00 0.00 2.71
8723 9881 3.616219 CGGGGTGGATGAAAGATTAACA 58.384 45.455 0.00 0.00 0.00 2.41
8724 9882 2.357952 GCGGGGTGGATGAAAGATTAAC 59.642 50.000 0.00 0.00 0.00 2.01
8725 9883 2.025793 TGCGGGGTGGATGAAAGATTAA 60.026 45.455 0.00 0.00 0.00 1.40
8726 9884 1.562008 TGCGGGGTGGATGAAAGATTA 59.438 47.619 0.00 0.00 0.00 1.75
8727 9885 0.331278 TGCGGGGTGGATGAAAGATT 59.669 50.000 0.00 0.00 0.00 2.40
8728 9886 0.552848 ATGCGGGGTGGATGAAAGAT 59.447 50.000 0.00 0.00 0.00 2.40
8729 9887 1.134220 GTATGCGGGGTGGATGAAAGA 60.134 52.381 0.00 0.00 0.00 2.52
8730 9888 1.308998 GTATGCGGGGTGGATGAAAG 58.691 55.000 0.00 0.00 0.00 2.62
8731 9889 0.621082 TGTATGCGGGGTGGATGAAA 59.379 50.000 0.00 0.00 0.00 2.69
8732 9890 0.107410 GTGTATGCGGGGTGGATGAA 60.107 55.000 0.00 0.00 0.00 2.57
8733 9891 1.524961 GTGTATGCGGGGTGGATGA 59.475 57.895 0.00 0.00 0.00 2.92
8734 9892 1.525995 GGTGTATGCGGGGTGGATG 60.526 63.158 0.00 0.00 0.00 3.51
8735 9893 1.279025 AAGGTGTATGCGGGGTGGAT 61.279 55.000 0.00 0.00 0.00 3.41
8736 9894 0.618107 TAAGGTGTATGCGGGGTGGA 60.618 55.000 0.00 0.00 0.00 4.02
8737 9895 0.472471 ATAAGGTGTATGCGGGGTGG 59.528 55.000 0.00 0.00 0.00 4.61
8738 9896 2.341846 AATAAGGTGTATGCGGGGTG 57.658 50.000 0.00 0.00 0.00 4.61
8739 9897 2.508300 AGAAATAAGGTGTATGCGGGGT 59.492 45.455 0.00 0.00 0.00 4.95
8740 9898 3.208747 AGAAATAAGGTGTATGCGGGG 57.791 47.619 0.00 0.00 0.00 5.73
8741 9899 4.957296 ACTAGAAATAAGGTGTATGCGGG 58.043 43.478 0.00 0.00 0.00 6.13
8742 9900 7.208080 ACTAACTAGAAATAAGGTGTATGCGG 58.792 38.462 0.00 0.00 0.00 5.69
8743 9901 8.644318 AACTAACTAGAAATAAGGTGTATGCG 57.356 34.615 0.00 0.00 0.00 4.73
8757 9915 9.162764 GCCATGATTTAGTCAAACTAACTAGAA 57.837 33.333 0.00 0.00 40.12 2.10
8758 9916 8.318412 TGCCATGATTTAGTCAAACTAACTAGA 58.682 33.333 0.00 0.00 40.12 2.43
8759 9917 8.492673 TGCCATGATTTAGTCAAACTAACTAG 57.507 34.615 0.00 0.00 40.12 2.57
8760 9918 8.726988 GTTGCCATGATTTAGTCAAACTAACTA 58.273 33.333 0.00 0.00 40.12 2.24
8761 9919 7.230510 TGTTGCCATGATTTAGTCAAACTAACT 59.769 33.333 0.00 0.00 40.12 2.24
8762 9920 7.367285 TGTTGCCATGATTTAGTCAAACTAAC 58.633 34.615 0.00 0.00 40.12 2.34
8763 9921 7.517614 TGTTGCCATGATTTAGTCAAACTAA 57.482 32.000 0.00 0.00 40.97 2.24
8764 9922 7.701539 ATGTTGCCATGATTTAGTCAAACTA 57.298 32.000 0.00 0.00 40.97 2.24
8765 9923 6.594788 ATGTTGCCATGATTTAGTCAAACT 57.405 33.333 0.00 0.00 40.97 2.66
8766 9924 8.931385 ATTATGTTGCCATGATTTAGTCAAAC 57.069 30.769 0.00 0.00 40.97 2.93
8769 9927 9.407380 ACTAATTATGTTGCCATGATTTAGTCA 57.593 29.630 0.00 0.00 38.06 3.41
8770 9928 9.884465 GACTAATTATGTTGCCATGATTTAGTC 57.116 33.333 0.00 0.00 38.06 2.59
8771 9929 9.632638 AGACTAATTATGTTGCCATGATTTAGT 57.367 29.630 0.00 0.00 38.06 2.24
8814 9972 9.801873 CGTGTGATTTCCCTCATATTTATTTTT 57.198 29.630 0.00 0.00 0.00 1.94
8815 9973 7.920682 GCGTGTGATTTCCCTCATATTTATTTT 59.079 33.333 0.00 0.00 0.00 1.82
8816 9974 7.068103 TGCGTGTGATTTCCCTCATATTTATTT 59.932 33.333 0.00 0.00 0.00 1.40
8817 9975 6.545666 TGCGTGTGATTTCCCTCATATTTATT 59.454 34.615 0.00 0.00 0.00 1.40
8818 9976 6.061441 TGCGTGTGATTTCCCTCATATTTAT 58.939 36.000 0.00 0.00 0.00 1.40
8819 9977 5.432645 TGCGTGTGATTTCCCTCATATTTA 58.567 37.500 0.00 0.00 0.00 1.40
8820 9978 4.269183 TGCGTGTGATTTCCCTCATATTT 58.731 39.130 0.00 0.00 0.00 1.40
8821 9979 3.884895 TGCGTGTGATTTCCCTCATATT 58.115 40.909 0.00 0.00 0.00 1.28
8822 9980 3.558931 TGCGTGTGATTTCCCTCATAT 57.441 42.857 0.00 0.00 0.00 1.78
8823 9981 3.055458 TCTTGCGTGTGATTTCCCTCATA 60.055 43.478 0.00 0.00 0.00 2.15
8824 9982 2.086869 CTTGCGTGTGATTTCCCTCAT 58.913 47.619 0.00 0.00 0.00 2.90
8825 9983 1.071542 TCTTGCGTGTGATTTCCCTCA 59.928 47.619 0.00 0.00 0.00 3.86
8826 9984 1.808411 TCTTGCGTGTGATTTCCCTC 58.192 50.000 0.00 0.00 0.00 4.30
8827 9985 2.086869 CATCTTGCGTGTGATTTCCCT 58.913 47.619 0.00 0.00 0.00 4.20
8828 9986 2.083774 TCATCTTGCGTGTGATTTCCC 58.916 47.619 0.00 0.00 0.00 3.97
8829 9987 5.679734 ATATCATCTTGCGTGTGATTTCC 57.320 39.130 0.00 0.00 34.62 3.13
8831 9989 9.657419 TGATATATATCATCTTGCGTGTGATTT 57.343 29.630 19.44 0.00 37.76 2.17
8846 10004 7.148255 GGCGGCAGTTTTTGATGATATATATCA 60.148 37.037 24.17 24.17 45.78 2.15
8847 10005 7.189512 GGCGGCAGTTTTTGATGATATATATC 58.810 38.462 14.77 14.77 0.00 1.63
8848 10006 6.183360 CGGCGGCAGTTTTTGATGATATATAT 60.183 38.462 10.53 0.00 0.00 0.86
8849 10007 5.121611 CGGCGGCAGTTTTTGATGATATATA 59.878 40.000 10.53 0.00 0.00 0.86
8850 10008 4.083324 CGGCGGCAGTTTTTGATGATATAT 60.083 41.667 10.53 0.00 0.00 0.86
8851 10009 3.249799 CGGCGGCAGTTTTTGATGATATA 59.750 43.478 10.53 0.00 0.00 0.86
8852 10010 2.033299 CGGCGGCAGTTTTTGATGATAT 59.967 45.455 10.53 0.00 0.00 1.63
8853 10011 1.400142 CGGCGGCAGTTTTTGATGATA 59.600 47.619 10.53 0.00 0.00 2.15
8854 10012 0.171007 CGGCGGCAGTTTTTGATGAT 59.829 50.000 10.53 0.00 0.00 2.45
8855 10013 0.886938 TCGGCGGCAGTTTTTGATGA 60.887 50.000 10.53 0.00 0.00 2.92
8856 10014 0.171007 ATCGGCGGCAGTTTTTGATG 59.829 50.000 10.53 0.00 0.00 3.07
8857 10015 0.887933 AATCGGCGGCAGTTTTTGAT 59.112 45.000 10.53 0.00 0.00 2.57
8858 10016 0.039617 CAATCGGCGGCAGTTTTTGA 60.040 50.000 10.53 0.00 0.00 2.69
8859 10017 0.039617 TCAATCGGCGGCAGTTTTTG 60.040 50.000 10.53 5.00 0.00 2.44
8860 10018 0.039527 GTCAATCGGCGGCAGTTTTT 60.040 50.000 10.53 0.00 0.00 1.94
8861 10019 1.579429 GTCAATCGGCGGCAGTTTT 59.421 52.632 10.53 0.00 0.00 2.43
8862 10020 2.332654 GGTCAATCGGCGGCAGTTT 61.333 57.895 10.53 0.00 0.00 2.66
8863 10021 2.746277 GGTCAATCGGCGGCAGTT 60.746 61.111 10.53 0.00 0.00 3.16
8865 10023 4.812476 TCGGTCAATCGGCGGCAG 62.812 66.667 10.53 0.00 0.00 4.85
8866 10024 3.885538 TTTCGGTCAATCGGCGGCA 62.886 57.895 10.53 0.00 0.00 5.69
8867 10025 3.095898 CTTTCGGTCAATCGGCGGC 62.096 63.158 7.21 0.00 0.00 6.53
8868 10026 1.421410 CTCTTTCGGTCAATCGGCGG 61.421 60.000 7.21 0.00 0.00 6.13
8869 10027 1.999051 CTCTTTCGGTCAATCGGCG 59.001 57.895 0.00 0.00 0.00 6.46
8870 10028 1.716172 GCTCTTTCGGTCAATCGGC 59.284 57.895 0.00 0.00 0.00 5.54
8871 10029 1.421410 CCGCTCTTTCGGTCAATCGG 61.421 60.000 0.00 0.00 44.18 4.18
8872 10030 1.999051 CCGCTCTTTCGGTCAATCG 59.001 57.895 0.00 0.00 44.18 3.34
8880 10038 1.667724 AGAATGAATGCCGCTCTTTCG 59.332 47.619 0.00 0.00 34.06 3.46
8881 10039 3.772060 AAGAATGAATGCCGCTCTTTC 57.228 42.857 0.00 0.00 0.00 2.62
8882 10040 5.841957 ATAAAGAATGAATGCCGCTCTTT 57.158 34.783 7.82 7.82 39.18 2.52
8883 10041 5.126061 ACAATAAAGAATGAATGCCGCTCTT 59.874 36.000 0.00 0.00 0.00 2.85
8884 10042 4.641989 ACAATAAAGAATGAATGCCGCTCT 59.358 37.500 0.00 0.00 0.00 4.09
8885 10043 4.925068 ACAATAAAGAATGAATGCCGCTC 58.075 39.130 0.00 0.00 0.00 5.03
8886 10044 4.641989 AGACAATAAAGAATGAATGCCGCT 59.358 37.500 0.00 0.00 0.00 5.52
8887 10045 4.925068 AGACAATAAAGAATGAATGCCGC 58.075 39.130 0.00 0.00 0.00 6.53
8888 10046 9.173939 GATAAAGACAATAAAGAATGAATGCCG 57.826 33.333 0.00 0.00 0.00 5.69
8897 10055 8.717821 CGTCAAGGTGATAAAGACAATAAAGAA 58.282 33.333 0.00 0.00 0.00 2.52
8898 10056 7.876068 ACGTCAAGGTGATAAAGACAATAAAGA 59.124 33.333 0.00 0.00 0.00 2.52
8899 10057 8.029642 ACGTCAAGGTGATAAAGACAATAAAG 57.970 34.615 0.00 0.00 0.00 1.85
8900 10058 7.972832 ACGTCAAGGTGATAAAGACAATAAA 57.027 32.000 0.00 0.00 0.00 1.40
8901 10059 7.442969 ACAACGTCAAGGTGATAAAGACAATAA 59.557 33.333 0.00 0.00 40.93 1.40
8902 10060 6.932400 ACAACGTCAAGGTGATAAAGACAATA 59.068 34.615 0.00 0.00 40.93 1.90
8903 10061 5.763204 ACAACGTCAAGGTGATAAAGACAAT 59.237 36.000 0.00 0.00 40.93 2.71
8904 10062 5.120399 ACAACGTCAAGGTGATAAAGACAA 58.880 37.500 0.00 0.00 40.93 3.18
8905 10063 4.699637 ACAACGTCAAGGTGATAAAGACA 58.300 39.130 0.00 0.00 40.93 3.41
8906 10064 4.748102 TGACAACGTCAAGGTGATAAAGAC 59.252 41.667 0.00 0.00 40.93 3.01
8907 10065 4.951254 TGACAACGTCAAGGTGATAAAGA 58.049 39.130 0.00 0.00 40.93 2.52
8908 10066 4.988540 TCTGACAACGTCAAGGTGATAAAG 59.011 41.667 0.00 0.00 42.26 1.85
8909 10067 4.951254 TCTGACAACGTCAAGGTGATAAA 58.049 39.130 0.00 0.00 42.26 1.40
8910 10068 4.594123 TCTGACAACGTCAAGGTGATAA 57.406 40.909 0.00 0.00 42.26 1.75
8911 10069 4.594123 TTCTGACAACGTCAAGGTGATA 57.406 40.909 0.00 0.00 42.26 2.15
8912 10070 3.469008 TTCTGACAACGTCAAGGTGAT 57.531 42.857 0.00 0.00 42.26 3.06
8913 10071 2.971660 TTCTGACAACGTCAAGGTGA 57.028 45.000 0.00 0.00 42.26 4.02
8914 10072 3.559655 TGAATTCTGACAACGTCAAGGTG 59.440 43.478 7.05 0.00 42.26 4.00
8915 10073 3.560068 GTGAATTCTGACAACGTCAAGGT 59.440 43.478 7.05 0.00 42.26 3.50
8916 10074 3.058914 GGTGAATTCTGACAACGTCAAGG 60.059 47.826 7.05 0.00 42.26 3.61
8917 10075 3.809832 AGGTGAATTCTGACAACGTCAAG 59.190 43.478 7.05 0.00 42.26 3.02
8918 10076 3.804036 AGGTGAATTCTGACAACGTCAA 58.196 40.909 7.05 0.00 42.26 3.18
8919 10077 3.390135 GAGGTGAATTCTGACAACGTCA 58.610 45.455 7.05 0.00 40.50 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.