AutoCloner

Multiple sequence alignment - TraesCS5A01G173300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G173300	chr5A	100.000	5928	0	0	1	5928	366638749	366632822	0.000000e+00	10948.0
1	TraesCS5A01G173300	chr5A	91.083	157	14	0	3266	3422	86662175	86662019	4.650000e-51	213.0
2	TraesCS5A01G173300	chr5A	89.062	64	6	1	3154	3216	313876828	313876891	1.770000e-10	78.7
3	TraesCS5A01G173300	chr5D	96.029	5767	174	24	178	5928	277564674	277558947	0.000000e+00	9330.0
4	TraesCS5A01G173300	chr5D	87.845	181	17	4	1	178	277565420	277565242	2.170000e-49	207.0
5	TraesCS5A01G173300	chr5D	89.062	64	6	1	3154	3216	240088125	240088062	1.770000e-10	78.7
6	TraesCS5A01G173300	chr5D	80.556	108	10	7	3114	3216	286187644	286187543	8.240000e-09	73.1
7	TraesCS5A01G173300	chr5B	95.444	2568	85	7	3374	5928	315615623	315613075	0.000000e+00	4065.0
8	TraesCS5A01G173300	chr5B	96.426	1511	40	8	1728	3232	315617156	315615654	0.000000e+00	2479.0
9	TraesCS5A01G173300	chr5B	93.577	1557	63	16	187	1710	315618761	315617209	0.000000e+00	2287.0
10	TraesCS5A01G173300	chr5B	83.654	104	13	3	3006	3108	505213156	505213056	1.760000e-15	95.3
11	TraesCS5A01G173300	chr5B	85.057	87	12	1	3159	3245	710654471	710654556	2.940000e-13	87.9
12	TraesCS5A01G173300	chr5B	89.831	59	6	0	3158	3216	263518835	263518893	6.370000e-10	76.8
13	TraesCS5A01G173300	chr7A	91.139	158	11	3	3267	3422	609383408	609383564	1.670000e-50	211.0
14	TraesCS5A01G173300	chr7A	91.216	148	12	1	3276	3422	201987149	201987002	3.620000e-47	200.0
15	TraesCS5A01G173300	chr7A	89.744	156	16	0	3267	3422	462978584	462978739	3.620000e-47	200.0
16	TraesCS5A01G173300	chr7B	89.873	158	13	3	3267	3422	567998859	567999015	3.620000e-47	200.0
17	TraesCS5A01G173300	chr7B	84.071	113	14	1	3160	3272	675998769	675998877	8.130000e-19	106.0
18	TraesCS5A01G173300	chr7B	87.879	66	8	0	3194	3259	89917599	89917534	1.770000e-10	78.7
19	TraesCS5A01G173300	chr7B	78.302	106	19	4	4	106	685662363	685662259	1.380000e-06	65.8
20	TraesCS5A01G173300	chr2D	90.260	154	14	1	3270	3422	88290055	88290208	3.620000e-47	200.0
21	TraesCS5A01G173300	chr2A	89.375	160	15	1	3265	3424	329688177	329688020	3.620000e-47	200.0
22	TraesCS5A01G173300	chr2A	95.745	47	2	0	3057	3103	707078236	707078282	6.370000e-10	76.8
23	TraesCS5A01G173300	chr2A	91.304	46	4	0	3054	3099	677046834	677046879	4.960000e-06	63.9
24	TraesCS5A01G173300	chr3A	89.677	155	16	0	3267	3421	466791005	466791159	1.300000e-46	198.0
25	TraesCS5A01G173300	chr6A	80.000	140	21	6	1	135	554782133	554782270	4.890000e-16	97.1
26	TraesCS5A01G173300	chr3B	87.654	81	10	0	5	85	425723447	425723527	1.760000e-15	95.3
27	TraesCS5A01G173300	chr3B	94.595	37	2	0	3065	3101	788164154	788164118	2.310000e-04	58.4
28	TraesCS5A01G173300	chr4D	81.197	117	17	4	9	122	318926896	318927010	8.180000e-14	89.8
29	TraesCS5A01G173300	chr1B	80.672	119	18	5	4	119	567980535	567980419	2.940000e-13	87.9
30	TraesCS5A01G173300	chr6B	86.842	76	10	0	10	85	715394913	715394988	1.060000e-12	86.1
31	TraesCS5A01G173300	chr3D	81.373	102	14	5	9	106	457017453	457017553	1.770000e-10	78.7
32	TraesCS5A01G173300	chr7D	83.529	85	8	4	4	85	554369228	554369309	2.290000e-09	75.0
33	TraesCS5A01G173300	chrUn	92.857	42	3	0	3140	3181	32248345	32248304	1.780000e-05	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G173300	chr5A	366632822	366638749	5927	True	10948.000000	10948	100.000	1	5928	1	chr5A.!!$R2	5927
1	TraesCS5A01G173300	chr5D	277558947	277565420	6473	True	4768.500000	9330	91.937	1	5928	2	chr5D.!!$R3	5927
2	TraesCS5A01G173300	chr5B	315613075	315618761	5686	True	2943.666667	4065	95.149	187	5928	3	chr5B.!!$R2	5741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
647	1241	0.523072	TTCTTCCATTGCTGCTTCGC	59.477	50.000	0.00	0.00	4.70	F
1284	1892	0.725118	CGAACGTGGTCACTCTCGTC	60.725	60.000	0.00	35.49	4.20	F
1533	2141	1.732259	GCTGTGTGAAATGTCTACGGG	59.268	52.381	0.00	0.00	5.28	F
2652	3295	2.633967	TGCTTGATTGGCCATTCACTTT	59.366	40.909	26.08	0.00	2.66	F
3636	4286	4.635223	TGGTCAAGAGACAATGTGAGAAG	58.365	43.478	0.00	46.80	2.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1981	2624	0.394352	CCTTTAGGTCCCTGCGCATT	60.394	55.000	12.24	0.00	0.00	3.56	R
2960	3603	1.154469	GGTAAGCTTTCGCGTGTGC	60.154	57.895	3.20	8.95	42.32	4.57	R
3411	4061	0.970937	CTTGCGTCCTACTCCCTCCA	60.971	60.000	0.00	0.00	0.00	3.86	R
3652	4302	1.142870	TGTGACCTCAAACTGGAAGGG	59.857	52.381	0.00	0.00	39.30	3.95	R
5039	5695	0.114954	TGGGCTCATTTTGCTCCCTT	59.885	50.000	0.00	0.00	37.83	3.95	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
34	35	3.366440	GTTCTGACGACAGTAGTGGTT	57.634	47.619	14.38	0.00	43.81	3.67
38	39	3.131577	TCTGACGACAGTAGTGGTTGTTT	59.868	43.478	14.38	0.00	43.81	2.83
44	45	2.025699	ACAGTAGTGGTTGTTTGGTGGT	60.026	45.455	1.92	0.00	0.00	4.16
47	48	1.931635	AGTGGTTGTTTGGTGGTGTT	58.068	45.000	0.00	0.00	0.00	3.32
49	50	0.898320	TGGTTGTTTGGTGGTGTTGG	59.102	50.000	0.00	0.00	0.00	3.77
53	54	3.369997	GGTTGTTTGGTGGTGTTGGAATT	60.370	43.478	0.00	0.00	0.00	2.17
54	55	3.810310	TGTTTGGTGGTGTTGGAATTC	57.190	42.857	0.00	0.00	0.00	2.17
56	57	1.323412	TTGGTGGTGTTGGAATTCCG	58.677	50.000	19.57	0.00	39.43	4.30
63	64	4.398044	GTGGTGTTGGAATTCCGATGTAAT	59.602	41.667	17.71	0.00	39.43	1.89
98	99	9.856488	TGTTTGAGATACTCTAATACAGTGAAC	57.144	33.333	0.00	0.00	29.44	3.18
173	175	6.094186	AGGAAGAAAACACAGAAGAAAGTGAC	59.906	38.462	0.00	0.00	39.03	3.67
181	751	3.873952	ACAGAAGAAAGTGACTGTGAAGC	59.126	43.478	0.00	0.00	41.16	3.86
211	781	3.660621	GTGCAACTGACCAGCCTC	58.339	61.111	0.00	0.00	0.00	4.70
212	782	1.072159	GTGCAACTGACCAGCCTCT	59.928	57.895	0.00	0.00	0.00	3.69
305	882	0.958876	GGCGACGGAAATCCCACTTT	60.959	55.000	0.00	0.00	34.14	2.66
393	983	1.065928	CGCTAACCCCTACGAGCAG	59.934	63.158	0.00	0.00	34.49	4.24
398	988	2.125106	CCCCTACGAGCAGGCAAC	60.125	66.667	0.00	0.00	34.02	4.17
418	1008	1.693640	CCTCCAGCCCCAAAGACAT	59.306	57.895	0.00	0.00	0.00	3.06
461	1052	4.452733	GAGTTGGCGAGTCCCGGG	62.453	72.222	16.85	16.85	39.04	5.73
647	1241	0.523072	TTCTTCCATTGCTGCTTCGC	59.477	50.000	0.00	0.00	0.00	4.70
711	1319	4.560743	GGGGCTGCTGAGCTAGGC	62.561	72.222	17.52	17.52	45.44	3.93
729	1337	2.046892	TGCTCGCTGGCTTCTTCC	60.047	61.111	0.00	0.00	0.00	3.46
785	1393	4.547367	GGAGGGACGGCCATTCGG	62.547	72.222	11.00	0.00	35.15	4.30
852	1460	1.016130	CGATCACTGTTCTGCCGCTT	61.016	55.000	0.00	0.00	0.00	4.68
947	1555	1.840635	ACATAGGAGGTTTCTGAGGCC	59.159	52.381	0.00	0.00	0.00	5.19
1044	1652	3.068729	GCCCAAAGAGCATTCCGGC	62.069	63.158	0.00	0.00	0.00	6.13
1092	1700	1.802069	TCGATGTCGGCAATGTGAAA	58.198	45.000	0.00	0.00	40.29	2.69
1188	1796	2.456119	GCAGTACGCGCTCAAGCAT	61.456	57.895	5.73	0.00	42.21	3.79
1200	1808	2.426024	GCTCAAGCATGTCATTGTCCAT	59.574	45.455	0.00	0.00	41.59	3.41
1278	1886	2.420043	CACCCGAACGTGGTCACT	59.580	61.111	0.00	0.00	32.46	3.41
1284	1892	0.725118	CGAACGTGGTCACTCTCGTC	60.725	60.000	0.00	0.00	35.49	4.20
1290	1898	2.202492	GTCACTCTCGTCGCGCAT	60.202	61.111	8.75	0.00	0.00	4.73
1533	2141	1.732259	GCTGTGTGAAATGTCTACGGG	59.268	52.381	0.00	0.00	0.00	5.28
1648	2256	4.940046	CAGGAAATCATGTGCTAGTCACTT	59.060	41.667	15.28	8.61	45.81	3.16
1649	2257	5.413833	CAGGAAATCATGTGCTAGTCACTTT	59.586	40.000	15.28	9.18	45.81	2.66
1718	2326	5.582550	TGCTCTCTGATGTACATCGTTAAG	58.417	41.667	26.56	21.30	40.63	1.85
1736	2379	6.916387	TCGTTAAGAGCTAAATTATCAGGACG	59.084	38.462	0.00	0.00	0.00	4.79
1883	2526	6.563422	TGGCTGTAGATTGCAATTGAATAAC	58.437	36.000	14.33	6.60	0.00	1.89
1888	2531	9.661187	CTGTAGATTGCAATTGAATAACTCATC	57.339	33.333	14.33	0.00	32.78	2.92
1945	2588	4.894784	TCCTTCAAGAAATTGCTACGTCT	58.105	39.130	0.00	0.00	0.00	4.18
1981	2624	4.529897	AGGCATCACAGCAAATCTATTCA	58.470	39.130	0.00	0.00	35.83	2.57
1985	2628	5.175126	GCATCACAGCAAATCTATTCAATGC	59.825	40.000	0.00	0.00	37.28	3.56
2125	2768	7.310664	GCATTGAAGAAGATGTCATCAGAAAA	58.689	34.615	15.20	2.60	35.48	2.29
2256	2899	3.264193	ACTGATTGCAGATGTGGGACTTA	59.736	43.478	0.00	0.00	45.17	2.24
2326	2969	6.406177	CCATCTTTGCAGCCATTACACTATTT	60.406	38.462	0.00	0.00	0.00	1.40
2327	2970	7.201812	CCATCTTTGCAGCCATTACACTATTTA	60.202	37.037	0.00	0.00	0.00	1.40
2366	3009	9.444600	TGTATTACCTATCTTGTTCTTTGAACC	57.555	33.333	7.81	0.00	0.00	3.62
2652	3295	2.633967	TGCTTGATTGGCCATTCACTTT	59.366	40.909	26.08	0.00	0.00	2.66
2713	3356	5.520649	CGAATTAGCCTTCCAGTTCTCTAAC	59.479	44.000	0.00	0.00	35.72	2.34
3029	3672	9.477484	AGTATATTTCATGAGATTCGGTTGTAC	57.523	33.333	3.78	0.00	0.00	2.90
3030	3673	9.477484	GTATATTTCATGAGATTCGGTTGTACT	57.523	33.333	3.78	0.00	0.00	2.73
3338	3988	5.221244	TGGACTACATACGGATTGACATGAG	60.221	44.000	0.00	0.00	0.00	2.90
3506	4156	8.142994	AGCCATTTTGTTATAGTAGTTCATCG	57.857	34.615	0.00	0.00	0.00	3.84
3527	4177	6.249911	TCGGATCTTTCTTCTCTAGGTCTA	57.750	41.667	0.00	0.00	0.00	2.59
3532	4182	7.201875	GGATCTTTCTTCTCTAGGTCTAAGTGG	60.202	44.444	0.00	0.00	0.00	4.00
3608	4258	5.104259	ACAATGTATTTCAGGACCCTCTC	57.896	43.478	0.00	0.00	0.00	3.20
3636	4286	4.635223	TGGTCAAGAGACAATGTGAGAAG	58.365	43.478	0.00	0.00	46.80	2.85
4325	4975	5.477291	ACTCCGGTATGATTACTCCTACATG	59.523	44.000	0.00	0.00	0.00	3.21
4328	4978	5.477291	CCGGTATGATTACTCCTACATGTCT	59.523	44.000	0.00	0.00	0.00	3.41
4351	5001	9.777575	GTCTTAACTAATCTTCTCACTGTACTC	57.222	37.037	0.00	0.00	0.00	2.59
4668	5324	3.660621	GCCGAAAGCTCAAGCAGT	58.339	55.556	4.59	0.00	45.16	4.40
4676	5332	5.215160	CGAAAGCTCAAGCAGTTGTAAAAT	58.785	37.500	4.59	0.00	45.16	1.82
4727	5383	2.170187	AGGGCATCACAAAGCAACAAAA	59.830	40.909	0.00	0.00	0.00	2.44
4751	5407	2.413453	GGCTCGCTTAGTCAGTCAAAAG	59.587	50.000	0.00	0.00	0.00	2.27
4767	5423	0.751643	AAAGCAAACTCTGGTGCCGT	60.752	50.000	0.00	0.00	41.88	5.68
5099	5755	1.632422	CGTAGGTACGTTCGCCAATT	58.368	50.000	0.00	0.00	44.13	2.32
5100	5756	2.796304	CGTAGGTACGTTCGCCAATTA	58.204	47.619	0.00	0.00	44.13	1.40
5183	5839	6.190954	GTTTCACTGAAACCTGTAAGTTGT	57.809	37.500	19.98	0.00	44.04	3.32
5462	6128	4.784177	TGCAAGCATGAGAATCCATCTTA	58.216	39.130	0.00	0.00	38.96	2.10
5482	6148	2.270352	TTCGTCAGGTTTCCTTGCAT	57.730	45.000	0.00	0.00	0.00	3.96
5537	6203	2.115266	CACGCAGGAAAAGGGGGT	59.885	61.111	0.00	0.00	0.00	4.95
5772	6438	2.009681	CCCAAACCTAAGCCCAAGTT	57.990	50.000	0.00	0.00	0.00	2.66
5836	6502	7.346471	ACATGGTACTATGATTTTTGCCTACT	58.654	34.615	24.30	0.00	0.00	2.57
5912	6578	5.809001	AGATCTCCATCTTGTTGCACTTTA	58.191	37.500	0.00	0.00	35.67	1.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
34	35	2.432510	GGAATTCCAACACCACCAAACA	59.567	45.455	20.04	0.00	35.64	2.83
38	39	0.474614	TCGGAATTCCAACACCACCA	59.525	50.000	24.09	0.00	35.14	4.17
181	751	0.110509	GTTGCACTGTCGCATCTGTG	60.111	55.000	5.90	9.58	42.62	3.66
202	772	1.599576	GAAGGGACAGAGGCTGGTC	59.400	63.158	0.00	0.00	35.51	4.02
211	781	0.777446	TGGGGAAAAGGAAGGGACAG	59.223	55.000	0.00	0.00	0.00	3.51
212	782	0.777446	CTGGGGAAAAGGAAGGGACA	59.223	55.000	0.00	0.00	0.00	4.02
398	988	2.941025	TCTTTGGGGCTGGAGGGG	60.941	66.667	0.00	0.00	0.00	4.79
402	992	0.623723	GGTATGTCTTTGGGGCTGGA	59.376	55.000	0.00	0.00	0.00	3.86
461	1052	2.045926	CAGCAGGTGTGGTAGGGC	60.046	66.667	0.00	0.00	31.49	5.19
499	1090	2.114411	GAAGCGACCAACCCCCAA	59.886	61.111	0.00	0.00	0.00	4.12
711	1319	2.105466	GGAAGAAGCCAGCGAGCAG	61.105	63.158	3.80	0.00	34.23	4.24
729	1337	1.908066	GCTTACCGCCGAACACCAAG	61.908	60.000	0.00	0.00	0.00	3.61
785	1393	0.804989	AGCTTTGATACGGCAACTGC	59.195	50.000	0.00	0.00	41.14	4.40
793	1401	5.157781	GCCTGTCTATCTAGCTTTGATACG	58.842	45.833	0.00	0.00	0.00	3.06
852	1460	0.323629	GAATCAACAGGGTCCGTCCA	59.676	55.000	0.00	0.00	38.11	4.02
947	1555	1.082104	GTCAAAAGCGCCTGGTTCG	60.082	57.895	2.29	0.00	33.97	3.95
994	1602	4.503910	CTGAACGGTTTCCACATGATCTA	58.496	43.478	0.00	0.00	0.00	1.98
996	1604	2.420022	CCTGAACGGTTTCCACATGATC	59.580	50.000	0.00	0.00	0.00	2.92
1007	1615	0.957395	CATGAGCTGCCTGAACGGTT	60.957	55.000	0.00	0.00	34.25	4.44
1092	1700	4.681978	GCTTCCCGGACGTGCACT	62.682	66.667	16.19	1.46	0.00	4.40
1125	1733	0.793478	CGAGGTACACGCACGAGAAG	60.793	60.000	0.00	0.00	34.76	2.85
1149	1757	3.637273	GCCGGGTTGGTCAGGTCT	61.637	66.667	2.18	0.00	41.21	3.85
1200	1808	1.666011	GTCCAGCGACTCCTTGTCA	59.334	57.895	0.00	0.00	45.60	3.58
1278	1886	3.132481	TATGGCATGCGCGACGAGA	62.132	57.895	12.10	0.00	39.92	4.04
1419	2027	1.337635	GCATTGCAAACATCCCGGAAA	60.338	47.619	0.73	0.00	0.00	3.13
1533	2141	1.795286	CCAACGACAGAGAACTGCTTC	59.205	52.381	0.00	0.00	46.95	3.86
1718	2326	4.811557	ACTTGCGTCCTGATAATTTAGCTC	59.188	41.667	0.00	0.00	0.00	4.09
1913	2556	6.403418	GCAATTTCTTGAAGGATCAGACTGAG	60.403	42.308	11.52	0.00	36.78	3.35
1945	2588	7.038799	TGCTGTGATGCCTCTATAATGAAGATA	60.039	37.037	0.00	0.00	0.00	1.98
1981	2624	0.394352	CCTTTAGGTCCCTGCGCATT	60.394	55.000	12.24	0.00	0.00	3.56
1985	2628	1.450312	CAGCCTTTAGGTCCCTGCG	60.450	63.158	0.00	0.00	37.57	5.18
2125	2768	4.202367	GCCCTATAAGCAGGAGTTGTATGT	60.202	45.833	0.00	0.00	38.00	2.29
2256	2899	7.363031	TCTCACTAATAACTTCCCTCCTGTAT	58.637	38.462	0.00	0.00	0.00	2.29
2366	3009	6.950545	TCAGATACAACAAAGTAAAACACCG	58.049	36.000	0.00	0.00	0.00	4.94
2399	3042	6.187682	ACCACCTTAGCTTATGCAGTTATTT	58.812	36.000	0.00	0.00	42.74	1.40
2652	3295	9.667107	CTAACTAAGACCAACCTAAATTCATGA	57.333	33.333	0.00	0.00	0.00	3.07
2713	3356	7.734924	ACCTATAACAGTACATGCATCAATG	57.265	36.000	0.00	0.00	0.00	2.82
2960	3603	1.154469	GGTAAGCTTTCGCGTGTGC	60.154	57.895	3.20	8.95	42.32	4.57
2963	3606	1.992170	AGTAGGTAAGCTTTCGCGTG	58.008	50.000	3.20	0.00	42.32	5.34
3004	3647	9.477484	AGTACAACCGAATCTCATGAAATATAC	57.523	33.333	0.00	0.00	0.00	1.47
3029	3672	9.874205	ATTGAACCAAATGTTTATGTTCCATAG	57.126	29.630	13.16	0.00	37.29	2.23
3274	3924	5.531634	ACGTTTTACAATAGTGAACGGAGA	58.468	37.500	16.52	0.00	45.03	3.71
3293	3943	6.866248	GTCCATATTGAAACATCCAAAACGTT	59.134	34.615	0.00	0.00	0.00	3.99
3338	3988	5.658674	CACGTTTTAGTGTGTTTGTTCAC	57.341	39.130	0.00	0.00	37.35	3.18
3411	4061	0.970937	CTTGCGTCCTACTCCCTCCA	60.971	60.000	0.00	0.00	0.00	3.86
3506	4156	7.201875	CCACTTAGACCTAGAGAAGAAAGATCC	60.202	44.444	0.00	0.00	0.00	3.36
3527	4177	5.640147	TCTCATATGGAACCAAAACCACTT	58.360	37.500	2.13	0.00	39.06	3.16
3532	4182	8.831715	AAATTGTTCTCATATGGAACCAAAAC	57.168	30.769	23.15	11.01	41.42	2.43
3608	4258	4.095932	CACATTGTCTCTTGACCATGATGG	59.904	45.833	10.53	10.53	44.40	3.51
3652	4302	1.142870	TGTGACCTCAAACTGGAAGGG	59.857	52.381	0.00	0.00	39.30	3.95
3976	4626	4.072131	CTGCCACAAAGGAGCTAAAAGTA	58.928	43.478	0.00	0.00	41.22	2.24
4325	4975	9.777575	GAGTACAGTGAGAAGATTAGTTAAGAC	57.222	37.037	0.00	0.00	0.00	3.01
4668	5324	1.867919	CGGGCGGGCACATTTTACAA	61.868	55.000	3.27	0.00	0.00	2.41
4727	5383	1.935327	GACTGACTAAGCGAGCCGGT	61.935	60.000	1.90	0.00	40.00	5.28
4751	5407	2.617274	GGACGGCACCAGAGTTTGC	61.617	63.158	0.00	0.00	38.06	3.68
5039	5695	0.114954	TGGGCTCATTTTGCTCCCTT	59.885	50.000	0.00	0.00	37.83	3.95
5265	5921	5.065602	CCATGTCACATGTGTCCAGATTTAG	59.934	44.000	24.63	9.78	0.00	1.85
5462	6128	2.270352	TGCAAGGAAACCTGACGAAT	57.730	45.000	0.00	0.00	32.13	3.34
5520	6186	1.530655	AACCCCCTTTTCCTGCGTG	60.531	57.895	0.00	0.00	0.00	5.34
5527	6193	3.296854	ACTGTTCTTCAACCCCCTTTTC	58.703	45.455	0.00	0.00	0.00	2.29
5588	6254	6.988580	CACTTTGTCTAATCATATGAGCCTCA	59.011	38.462	11.78	0.00	0.00	3.86
5891	6557	4.393062	CGTAAAGTGCAACAAGATGGAGAT	59.607	41.667	0.00	0.00	41.43	2.75

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.