Multiple sequence alignment - TraesCS5A01G172100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G172100 chr5A 100.000 3791 0 0 1 3791 365252554 365256344 0.000000e+00 7001.0
1 TraesCS5A01G172100 chr5A 91.269 1970 93 36 904 2841 365599388 365601310 0.000000e+00 2612.0
2 TraesCS5A01G172100 chr5A 82.766 441 50 12 3347 3771 365602363 365602793 1.660000e-98 370.0
3 TraesCS5A01G172100 chr5D 90.799 2402 130 38 555 2893 276917025 276919398 0.000000e+00 3127.0
4 TraesCS5A01G172100 chr5D 90.044 2049 138 40 904 2917 276924748 276926765 0.000000e+00 2593.0
5 TraesCS5A01G172100 chr5D 90.110 364 18 5 213 570 276916248 276916599 1.240000e-124 457.0
6 TraesCS5A01G172100 chr5D 82.090 134 4 4 296 422 276924491 276924611 3.120000e-16 97.1
7 TraesCS5A01G172100 chr5D 95.745 47 2 0 623 669 276924620 276924666 4.060000e-10 76.8
8 TraesCS5A01G172100 chr5D 97.500 40 1 0 230 269 276924183 276924222 6.800000e-08 69.4
9 TraesCS5A01G172100 chr5B 91.872 1907 106 34 928 2816 314276590 314278465 0.000000e+00 2617.0
10 TraesCS5A01G172100 chr5B 90.474 1942 104 28 204 2099 314194801 314192895 0.000000e+00 2486.0
11 TraesCS5A01G172100 chr5B 89.644 927 61 15 2096 3016 314192811 314191914 0.000000e+00 1147.0
12 TraesCS5A01G172100 chr5B 95.745 47 2 0 623 669 314276471 314276517 4.060000e-10 76.8
13 TraesCS5A01G172100 chr7B 78.337 517 95 14 1303 1812 409712037 409711531 6.110000e-83 318.0
14 TraesCS5A01G172100 chr7D 78.185 518 94 16 1303 1812 400171046 400170540 2.840000e-81 313.0
15 TraesCS5A01G172100 chr7D 84.326 319 48 2 2458 2775 400170101 400169784 1.020000e-80 311.0
16 TraesCS5A01G172100 chr6D 78.535 396 68 17 1304 1692 54238653 54239038 1.050000e-60 244.0
17 TraesCS5A01G172100 chr6A 78.283 396 69 17 1304 1692 61007507 61007122 4.890000e-59 239.0
18 TraesCS5A01G172100 chr1D 78.919 370 61 17 1319 1679 56530515 56530154 6.330000e-58 235.0
19 TraesCS5A01G172100 chr7A 85.034 147 17 4 1302 1444 158395270 158395415 1.100000e-30 145.0
20 TraesCS5A01G172100 chr3D 79.221 154 32 0 2 155 24194384 24194537 1.440000e-19 108.0
21 TraesCS5A01G172100 chr3D 82.258 124 18 2 2938 3057 602226571 602226694 1.860000e-18 104.0
22 TraesCS5A01G172100 chr3D 91.304 46 2 2 2872 2917 149234717 149234760 1.140000e-05 62.1
23 TraesCS5A01G172100 chr3B 80.620 129 21 2 2939 3063 809224882 809224754 3.120000e-16 97.1
24 TraesCS5A01G172100 chr2A 96.970 33 0 1 2872 2904 699574132 699574163 2.000000e-03 54.7
25 TraesCS5A01G172100 chr1A 100.000 28 0 0 2872 2899 552323079 552323106 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G172100 chr5A 365252554 365256344 3790 False 7001.000 7001 100.00000 1 3791 1 chr5A.!!$F1 3790
1 TraesCS5A01G172100 chr5A 365599388 365602793 3405 False 1491.000 2612 87.01750 904 3771 2 chr5A.!!$F2 2867
2 TraesCS5A01G172100 chr5D 276916248 276919398 3150 False 1792.000 3127 90.45450 213 2893 2 chr5D.!!$F1 2680
3 TraesCS5A01G172100 chr5D 276924183 276926765 2582 False 709.075 2593 91.34475 230 2917 4 chr5D.!!$F2 2687
4 TraesCS5A01G172100 chr5B 314191914 314194801 2887 True 1816.500 2486 90.05900 204 3016 2 chr5B.!!$R1 2812
5 TraesCS5A01G172100 chr5B 314276471 314278465 1994 False 1346.900 2617 93.80850 623 2816 2 chr5B.!!$F1 2193
6 TraesCS5A01G172100 chr7B 409711531 409712037 506 True 318.000 318 78.33700 1303 1812 1 chr7B.!!$R1 509
7 TraesCS5A01G172100 chr7D 400169784 400171046 1262 True 312.000 313 81.25550 1303 2775 2 chr7D.!!$R1 1472

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.180171 CGGGACTGATGCACCCATTA 59.82 55.0 9.8 0.0 43.4 1.90 F
1026 1784 0.169672 CCTCCAAAGCTTGCATGTCG 59.83 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1859 2638 0.371989 TGTGTTGACGTGCAGTTTCG 59.628 50.0 0.00 0.0 0.0 3.46 R
2997 4097 0.537143 AAGACAGATGCGCCAACCAA 60.537 50.0 4.18 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.116772 AGGTCAGACGAACCGGGA 59.883 61.111 6.32 0.00 41.89 5.14
18 19 1.305046 AGGTCAGACGAACCGGGAT 60.305 57.895 6.32 0.00 41.89 3.85
19 20 0.903454 AGGTCAGACGAACCGGGATT 60.903 55.000 6.32 0.00 41.89 3.01
20 21 0.739813 GGTCAGACGAACCGGGATTG 60.740 60.000 6.32 0.00 0.00 2.67
21 22 0.739813 GTCAGACGAACCGGGATTGG 60.740 60.000 6.32 0.00 0.00 3.16
22 23 1.189524 TCAGACGAACCGGGATTGGT 61.190 55.000 6.32 0.00 46.67 3.67
23 24 1.019278 CAGACGAACCGGGATTGGTG 61.019 60.000 6.32 0.00 42.89 4.17
24 25 1.004200 GACGAACCGGGATTGGTGT 60.004 57.895 6.32 0.00 42.89 4.16
25 26 1.004200 ACGAACCGGGATTGGTGTC 60.004 57.895 6.32 0.00 42.89 3.67
26 27 1.295423 CGAACCGGGATTGGTGTCT 59.705 57.895 6.32 0.00 42.89 3.41
27 28 0.533491 CGAACCGGGATTGGTGTCTA 59.467 55.000 6.32 0.00 42.89 2.59
28 29 1.738030 CGAACCGGGATTGGTGTCTAC 60.738 57.143 6.32 0.00 42.89 2.59
29 30 0.616891 AACCGGGATTGGTGTCTACC 59.383 55.000 6.32 0.00 42.89 3.18
67 68 4.021925 GCTGCTTGACCCGGGACT 62.022 66.667 32.02 4.94 0.00 3.85
68 69 2.046892 CTGCTTGACCCGGGACTG 60.047 66.667 32.02 18.95 0.00 3.51
69 70 2.525629 TGCTTGACCCGGGACTGA 60.526 61.111 32.02 13.41 0.00 3.41
70 71 1.903877 CTGCTTGACCCGGGACTGAT 61.904 60.000 32.02 2.86 0.00 2.90
71 72 1.450312 GCTTGACCCGGGACTGATG 60.450 63.158 32.02 13.47 0.00 3.07
72 73 1.450312 CTTGACCCGGGACTGATGC 60.450 63.158 32.02 7.46 0.00 3.91
73 74 2.184020 CTTGACCCGGGACTGATGCA 62.184 60.000 32.02 10.12 0.00 3.96
74 75 2.125106 GACCCGGGACTGATGCAC 60.125 66.667 32.02 2.67 0.00 4.57
75 76 3.682292 GACCCGGGACTGATGCACC 62.682 68.421 32.02 0.00 0.00 5.01
76 77 4.489771 CCCGGGACTGATGCACCC 62.490 72.222 18.48 0.00 40.17 4.61
77 78 3.716195 CCGGGACTGATGCACCCA 61.716 66.667 9.80 0.57 43.40 4.51
78 79 2.591753 CGGGACTGATGCACCCAT 59.408 61.111 9.80 0.00 43.40 4.00
79 80 1.077501 CGGGACTGATGCACCCATT 60.078 57.895 9.80 0.00 43.40 3.16
80 81 0.180171 CGGGACTGATGCACCCATTA 59.820 55.000 9.80 0.00 43.40 1.90
81 82 1.811558 CGGGACTGATGCACCCATTAG 60.812 57.143 9.80 0.00 43.40 1.73
84 85 2.717639 ACTGATGCACCCATTAGTCC 57.282 50.000 0.00 0.00 42.61 3.85
85 86 1.212935 ACTGATGCACCCATTAGTCCC 59.787 52.381 0.00 0.00 42.61 4.46
86 87 1.212688 CTGATGCACCCATTAGTCCCA 59.787 52.381 0.00 0.00 32.16 4.37
87 88 1.212688 TGATGCACCCATTAGTCCCAG 59.787 52.381 0.00 0.00 0.00 4.45
88 89 1.212935 GATGCACCCATTAGTCCCAGT 59.787 52.381 0.00 0.00 0.00 4.00
89 90 1.072266 TGCACCCATTAGTCCCAGTT 58.928 50.000 0.00 0.00 0.00 3.16
90 91 1.004277 TGCACCCATTAGTCCCAGTTC 59.996 52.381 0.00 0.00 0.00 3.01
91 92 2.012051 GCACCCATTAGTCCCAGTTCG 61.012 57.143 0.00 0.00 0.00 3.95
92 93 1.278127 CACCCATTAGTCCCAGTTCGT 59.722 52.381 0.00 0.00 0.00 3.85
93 94 2.498481 CACCCATTAGTCCCAGTTCGTA 59.502 50.000 0.00 0.00 0.00 3.43
94 95 3.055675 CACCCATTAGTCCCAGTTCGTAA 60.056 47.826 0.00 0.00 0.00 3.18
95 96 3.778629 ACCCATTAGTCCCAGTTCGTAAT 59.221 43.478 0.00 0.00 0.00 1.89
96 97 4.964262 ACCCATTAGTCCCAGTTCGTAATA 59.036 41.667 0.00 0.00 0.00 0.98
97 98 5.605488 ACCCATTAGTCCCAGTTCGTAATAT 59.395 40.000 0.00 0.00 0.00 1.28
98 99 5.932303 CCCATTAGTCCCAGTTCGTAATATG 59.068 44.000 0.00 0.00 0.00 1.78
99 100 6.239487 CCCATTAGTCCCAGTTCGTAATATGA 60.239 42.308 0.00 0.00 0.00 2.15
100 101 7.386851 CCATTAGTCCCAGTTCGTAATATGAT 58.613 38.462 0.00 0.00 0.00 2.45
101 102 7.545965 CCATTAGTCCCAGTTCGTAATATGATC 59.454 40.741 0.00 0.00 0.00 2.92
102 103 5.122512 AGTCCCAGTTCGTAATATGATCG 57.877 43.478 0.00 0.00 0.00 3.69
103 104 4.825634 AGTCCCAGTTCGTAATATGATCGA 59.174 41.667 0.00 0.00 0.00 3.59
104 105 5.048643 AGTCCCAGTTCGTAATATGATCGAG 60.049 44.000 0.00 0.00 35.13 4.04
105 106 5.048921 GTCCCAGTTCGTAATATGATCGAGA 60.049 44.000 0.00 0.00 35.13 4.04
106 107 5.048921 TCCCAGTTCGTAATATGATCGAGAC 60.049 44.000 0.00 0.00 35.13 3.36
107 108 5.048643 CCCAGTTCGTAATATGATCGAGACT 60.049 44.000 0.00 0.00 35.13 3.24
108 109 6.148976 CCCAGTTCGTAATATGATCGAGACTA 59.851 42.308 0.00 0.00 35.13 2.59
109 110 7.308408 CCCAGTTCGTAATATGATCGAGACTAA 60.308 40.741 0.00 0.00 35.13 2.24
110 111 8.237949 CCAGTTCGTAATATGATCGAGACTAAT 58.762 37.037 0.00 0.00 35.13 1.73
111 112 9.056306 CAGTTCGTAATATGATCGAGACTAATG 57.944 37.037 0.00 0.00 35.13 1.90
112 113 7.751348 AGTTCGTAATATGATCGAGACTAATGC 59.249 37.037 0.00 0.00 35.13 3.56
113 114 7.379098 TCGTAATATGATCGAGACTAATGCT 57.621 36.000 0.00 0.00 0.00 3.79
114 115 8.488651 TCGTAATATGATCGAGACTAATGCTA 57.511 34.615 0.00 0.00 0.00 3.49
115 116 9.110502 TCGTAATATGATCGAGACTAATGCTAT 57.889 33.333 0.00 0.00 0.00 2.97
116 117 9.163903 CGTAATATGATCGAGACTAATGCTATG 57.836 37.037 0.00 0.00 0.00 2.23
119 120 9.964303 AATATGATCGAGACTAATGCTATGATC 57.036 33.333 0.00 0.00 32.35 2.92
120 121 7.643569 ATGATCGAGACTAATGCTATGATCT 57.356 36.000 0.00 0.00 32.67 2.75
121 122 6.850555 TGATCGAGACTAATGCTATGATCTG 58.149 40.000 0.00 0.00 32.67 2.90
122 123 6.656693 TGATCGAGACTAATGCTATGATCTGA 59.343 38.462 0.00 0.00 32.67 3.27
123 124 6.247727 TCGAGACTAATGCTATGATCTGAC 57.752 41.667 0.00 0.00 0.00 3.51
124 125 5.182190 TCGAGACTAATGCTATGATCTGACC 59.818 44.000 0.00 0.00 0.00 4.02
125 126 5.048434 CGAGACTAATGCTATGATCTGACCA 60.048 44.000 0.00 0.00 0.00 4.02
126 127 6.343716 AGACTAATGCTATGATCTGACCAG 57.656 41.667 0.00 0.00 0.00 4.00
127 128 5.245751 AGACTAATGCTATGATCTGACCAGG 59.754 44.000 0.00 0.00 0.00 4.45
128 129 5.150715 ACTAATGCTATGATCTGACCAGGA 58.849 41.667 0.00 0.00 0.00 3.86
129 130 4.348863 AATGCTATGATCTGACCAGGAC 57.651 45.455 0.00 0.00 0.00 3.85
130 131 2.042464 TGCTATGATCTGACCAGGACC 58.958 52.381 0.00 0.00 0.00 4.46
131 132 2.042464 GCTATGATCTGACCAGGACCA 58.958 52.381 0.00 0.00 0.00 4.02
132 133 2.435805 GCTATGATCTGACCAGGACCAA 59.564 50.000 0.00 0.00 0.00 3.67
133 134 3.118261 GCTATGATCTGACCAGGACCAAA 60.118 47.826 0.00 0.00 0.00 3.28
134 135 4.626287 GCTATGATCTGACCAGGACCAAAA 60.626 45.833 0.00 0.00 0.00 2.44
135 136 3.140325 TGATCTGACCAGGACCAAAAC 57.860 47.619 0.00 0.00 0.00 2.43
136 137 2.224769 TGATCTGACCAGGACCAAAACC 60.225 50.000 0.00 0.00 0.00 3.27
137 138 0.476771 TCTGACCAGGACCAAAACCC 59.523 55.000 0.00 0.00 0.00 4.11
138 139 0.478507 CTGACCAGGACCAAAACCCT 59.521 55.000 0.00 0.00 0.00 4.34
140 141 0.185175 GACCAGGACCAAAACCCTGT 59.815 55.000 0.00 0.00 46.47 4.00
141 142 0.634465 ACCAGGACCAAAACCCTGTT 59.366 50.000 0.00 0.00 46.47 3.16
142 143 1.007842 ACCAGGACCAAAACCCTGTTT 59.992 47.619 0.00 0.00 46.47 2.83
143 144 2.115427 CCAGGACCAAAACCCTGTTTT 58.885 47.619 0.00 0.00 46.47 2.43
144 145 2.102420 CCAGGACCAAAACCCTGTTTTC 59.898 50.000 0.00 0.00 46.47 2.29
145 146 3.031013 CAGGACCAAAACCCTGTTTTCT 58.969 45.455 2.14 0.00 43.71 2.52
146 147 4.211920 CAGGACCAAAACCCTGTTTTCTA 58.788 43.478 2.14 0.00 43.71 2.10
147 148 4.037565 CAGGACCAAAACCCTGTTTTCTAC 59.962 45.833 2.14 0.00 43.71 2.59
148 149 3.319972 GGACCAAAACCCTGTTTTCTACC 59.680 47.826 2.14 3.30 0.00 3.18
149 150 3.955551 GACCAAAACCCTGTTTTCTACCA 59.044 43.478 2.14 0.00 0.00 3.25
150 151 3.958147 ACCAAAACCCTGTTTTCTACCAG 59.042 43.478 2.14 0.00 0.00 4.00
151 152 3.958147 CCAAAACCCTGTTTTCTACCAGT 59.042 43.478 2.14 0.00 0.00 4.00
152 153 4.202111 CCAAAACCCTGTTTTCTACCAGTG 60.202 45.833 2.14 0.00 0.00 3.66
153 154 2.271944 ACCCTGTTTTCTACCAGTGC 57.728 50.000 0.00 0.00 0.00 4.40
154 155 1.493022 ACCCTGTTTTCTACCAGTGCA 59.507 47.619 0.00 0.00 0.00 4.57
155 156 2.092103 ACCCTGTTTTCTACCAGTGCAA 60.092 45.455 0.00 0.00 0.00 4.08
156 157 2.554032 CCCTGTTTTCTACCAGTGCAAG 59.446 50.000 0.00 0.00 0.00 4.01
157 158 3.476552 CCTGTTTTCTACCAGTGCAAGA 58.523 45.455 0.00 0.00 0.00 3.02
158 159 4.074970 CCTGTTTTCTACCAGTGCAAGAT 58.925 43.478 0.00 0.00 0.00 2.40
159 160 4.520492 CCTGTTTTCTACCAGTGCAAGATT 59.480 41.667 0.00 0.00 0.00 2.40
160 161 5.437289 TGTTTTCTACCAGTGCAAGATTG 57.563 39.130 0.00 0.00 0.00 2.67
161 162 4.887071 TGTTTTCTACCAGTGCAAGATTGT 59.113 37.500 0.00 0.00 0.00 2.71
162 163 5.008613 TGTTTTCTACCAGTGCAAGATTGTC 59.991 40.000 0.00 0.00 0.00 3.18
163 164 4.623932 TTCTACCAGTGCAAGATTGTCT 57.376 40.909 0.00 0.00 0.00 3.41
164 165 4.193826 TCTACCAGTGCAAGATTGTCTC 57.806 45.455 0.00 0.00 0.00 3.36
165 166 3.834813 TCTACCAGTGCAAGATTGTCTCT 59.165 43.478 0.00 0.00 34.96 3.10
166 167 5.016831 TCTACCAGTGCAAGATTGTCTCTA 58.983 41.667 0.00 0.00 32.41 2.43
167 168 4.199432 ACCAGTGCAAGATTGTCTCTAG 57.801 45.455 0.00 0.00 32.41 2.43
168 169 3.580458 ACCAGTGCAAGATTGTCTCTAGT 59.420 43.478 0.00 0.00 32.41 2.57
169 170 4.180057 CCAGTGCAAGATTGTCTCTAGTC 58.820 47.826 0.00 0.00 32.41 2.59
170 171 4.322273 CCAGTGCAAGATTGTCTCTAGTCA 60.322 45.833 0.00 0.00 32.41 3.41
171 172 5.417811 CAGTGCAAGATTGTCTCTAGTCAT 58.582 41.667 0.00 0.00 32.41 3.06
172 173 6.406288 CCAGTGCAAGATTGTCTCTAGTCATA 60.406 42.308 0.00 0.00 32.41 2.15
173 174 6.475076 CAGTGCAAGATTGTCTCTAGTCATAC 59.525 42.308 0.00 0.00 32.41 2.39
174 175 5.457148 GTGCAAGATTGTCTCTAGTCATACG 59.543 44.000 0.00 0.00 32.41 3.06
175 176 5.125578 TGCAAGATTGTCTCTAGTCATACGT 59.874 40.000 0.00 0.00 32.41 3.57
176 177 6.037098 GCAAGATTGTCTCTAGTCATACGTT 58.963 40.000 0.00 0.00 32.41 3.99
177 178 6.197468 GCAAGATTGTCTCTAGTCATACGTTC 59.803 42.308 0.00 0.00 32.41 3.95
178 179 6.380095 AGATTGTCTCTAGTCATACGTTCC 57.620 41.667 0.00 0.00 30.26 3.62
179 180 6.123651 AGATTGTCTCTAGTCATACGTTCCT 58.876 40.000 0.00 0.00 30.26 3.36
180 181 6.603997 AGATTGTCTCTAGTCATACGTTCCTT 59.396 38.462 0.00 0.00 30.26 3.36
181 182 7.774157 AGATTGTCTCTAGTCATACGTTCCTTA 59.226 37.037 0.00 0.00 30.26 2.69
182 183 7.876936 TTGTCTCTAGTCATACGTTCCTTAT 57.123 36.000 0.00 0.00 0.00 1.73
183 184 7.260558 TGTCTCTAGTCATACGTTCCTTATG 57.739 40.000 0.00 0.00 0.00 1.90
184 185 6.262496 TGTCTCTAGTCATACGTTCCTTATGG 59.738 42.308 0.00 0.00 0.00 2.74
185 186 5.768662 TCTCTAGTCATACGTTCCTTATGGG 59.231 44.000 0.00 0.00 0.00 4.00
186 187 3.470645 AGTCATACGTTCCTTATGGGC 57.529 47.619 0.00 0.00 34.39 5.36
187 188 3.039011 AGTCATACGTTCCTTATGGGCT 58.961 45.455 0.00 0.00 34.39 5.19
188 189 4.220724 AGTCATACGTTCCTTATGGGCTA 58.779 43.478 0.00 0.00 34.39 3.93
189 190 4.038883 AGTCATACGTTCCTTATGGGCTAC 59.961 45.833 0.00 0.00 34.39 3.58
190 191 4.038883 GTCATACGTTCCTTATGGGCTACT 59.961 45.833 0.00 0.00 34.39 2.57
191 192 5.242393 GTCATACGTTCCTTATGGGCTACTA 59.758 44.000 0.00 0.00 34.39 1.82
192 193 5.475909 TCATACGTTCCTTATGGGCTACTAG 59.524 44.000 0.00 0.00 34.39 2.57
193 194 3.639952 ACGTTCCTTATGGGCTACTAGT 58.360 45.455 0.00 0.00 34.39 2.57
194 195 4.796606 ACGTTCCTTATGGGCTACTAGTA 58.203 43.478 1.89 1.89 34.39 1.82
195 196 4.582240 ACGTTCCTTATGGGCTACTAGTAC 59.418 45.833 0.00 0.00 34.39 2.73
196 197 4.022503 CGTTCCTTATGGGCTACTAGTACC 60.023 50.000 0.00 5.81 34.39 3.34
197 198 4.819702 TCCTTATGGGCTACTAGTACCA 57.180 45.455 13.13 13.13 37.41 3.25
198 199 5.349738 TCCTTATGGGCTACTAGTACCAT 57.650 43.478 22.14 22.14 45.19 3.55
199 200 5.084519 TCCTTATGGGCTACTAGTACCATG 58.915 45.833 25.07 14.66 43.22 3.66
200 201 4.223032 CCTTATGGGCTACTAGTACCATGG 59.777 50.000 25.07 18.16 43.22 3.66
201 202 1.420430 TGGGCTACTAGTACCATGGC 58.580 55.000 13.04 12.19 0.00 4.40
202 203 1.343580 TGGGCTACTAGTACCATGGCA 60.344 52.381 13.04 0.00 0.00 4.92
209 210 4.744795 ACTAGTACCATGGCAGAAAGAG 57.255 45.455 13.04 2.88 0.00 2.85
273 274 3.508840 CAAGTCCCGCGGCCAATC 61.509 66.667 22.85 7.39 0.00 2.67
336 579 4.320641 CGCAGAAAGCTACTCCTCCTATAC 60.321 50.000 0.00 0.00 42.61 1.47
337 580 4.320641 GCAGAAAGCTACTCCTCCTATACG 60.321 50.000 0.00 0.00 41.15 3.06
338 581 5.064558 CAGAAAGCTACTCCTCCTATACGA 58.935 45.833 0.00 0.00 0.00 3.43
339 582 5.180492 CAGAAAGCTACTCCTCCTATACGAG 59.820 48.000 0.00 0.00 0.00 4.18
340 583 4.710313 AAGCTACTCCTCCTATACGAGT 57.290 45.455 0.00 0.00 40.00 4.18
341 584 5.822132 AAGCTACTCCTCCTATACGAGTA 57.178 43.478 0.00 0.00 37.93 2.59
346 589 7.466746 CTACTCCTCCTATACGAGTAGTACT 57.533 44.000 1.37 1.37 45.76 2.73
383 626 1.002366 ATTAAGCAGAGCGCAGTTCG 58.998 50.000 11.47 0.00 44.46 3.95
450 705 2.595655 GCCCTTAATCCCGTGCCT 59.404 61.111 0.00 0.00 0.00 4.75
453 708 2.180204 CCTTAATCCCGTGCCTGCG 61.180 63.158 0.00 0.00 0.00 5.18
509 764 4.812476 TCTGGATTCACGCCGGCG 62.812 66.667 44.88 44.88 46.03 6.46
561 821 3.385433 ACTGATGAGCCATTCTCTCTCTG 59.615 47.826 0.00 0.00 42.38 3.35
571 1272 4.441792 CATTCTCTCTCTGTCTCTCTCGA 58.558 47.826 0.00 0.00 0.00 4.04
572 1273 4.545208 TTCTCTCTCTGTCTCTCTCGAA 57.455 45.455 0.00 0.00 0.00 3.71
605 1306 4.612486 CGCAACAAAAAGCAACCAAAAAGT 60.612 37.500 0.00 0.00 0.00 2.66
677 1406 0.739813 AAGGCGAACATCACGTAGCC 60.740 55.000 0.00 0.00 46.38 3.93
681 1410 1.421410 CGAACATCACGTAGCCTGCC 61.421 60.000 0.00 0.00 0.00 4.85
727 1456 7.749377 ATGAATCCCATCCCGTTCTATAATA 57.251 36.000 0.00 0.00 0.00 0.98
728 1457 7.562259 TGAATCCCATCCCGTTCTATAATAA 57.438 36.000 0.00 0.00 0.00 1.40
729 1458 8.158025 TGAATCCCATCCCGTTCTATAATAAT 57.842 34.615 0.00 0.00 0.00 1.28
730 1459 8.265055 TGAATCCCATCCCGTTCTATAATAATC 58.735 37.037 0.00 0.00 0.00 1.75
886 1618 4.625742 CGAACAACTACCATAACTGTCAGG 59.374 45.833 4.53 0.00 0.00 3.86
940 1694 1.846782 GTCGAATCAACTGATCGACCG 59.153 52.381 21.30 11.94 42.36 4.79
1026 1784 0.169672 CCTCCAAAGCTTGCATGTCG 59.830 55.000 0.00 0.00 0.00 4.35
1030 1788 1.135859 CCAAAGCTTGCATGTCGACTC 60.136 52.381 17.92 6.60 0.00 3.36
1194 1952 3.148279 GACTCCGCCCTGTCCGAT 61.148 66.667 0.00 0.00 0.00 4.18
1250 2012 0.250901 AAGTCCTGGACACATGCCAC 60.251 55.000 27.48 0.00 34.60 5.01
1600 2379 2.049802 CCGCGTACAAGGTGACGT 60.050 61.111 4.92 0.00 41.13 4.34
1822 2601 1.002773 CCGGCTACCAGGTAAACAACT 59.997 52.381 0.00 0.00 0.00 3.16
1831 2610 3.951680 CCAGGTAAACAACTCAACAACCT 59.048 43.478 0.00 0.00 36.31 3.50
1832 2611 4.920376 CAGGTAAACAACTCAACAACCTG 58.080 43.478 4.37 4.37 44.55 4.00
1835 2614 5.712917 AGGTAAACAACTCAACAACCTGAAA 59.287 36.000 0.00 0.00 34.64 2.69
1836 2615 5.803461 GGTAAACAACTCAACAACCTGAAAC 59.197 40.000 0.00 0.00 0.00 2.78
1838 2617 4.701956 ACAACTCAACAACCTGAAACTG 57.298 40.909 0.00 0.00 0.00 3.16
1839 2618 3.119495 ACAACTCAACAACCTGAAACTGC 60.119 43.478 0.00 0.00 0.00 4.40
1840 2619 2.722094 ACTCAACAACCTGAAACTGCA 58.278 42.857 0.00 0.00 0.00 4.41
1842 2621 1.400142 TCAACAACCTGAAACTGCACG 59.600 47.619 0.00 0.00 0.00 5.34
1843 2622 0.738389 AACAACCTGAAACTGCACGG 59.262 50.000 0.00 0.00 0.00 4.94
1844 2623 1.008538 CAACCTGAAACTGCACGGC 60.009 57.895 0.00 0.00 0.00 5.68
1845 2624 1.453015 AACCTGAAACTGCACGGCA 60.453 52.632 0.00 0.00 36.92 5.69
1857 2636 3.485947 TGCACGGCAGATATGTTTTTC 57.514 42.857 0.00 0.00 33.32 2.29
1858 2637 3.081061 TGCACGGCAGATATGTTTTTCT 58.919 40.909 0.00 0.00 33.32 2.52
1859 2638 3.126858 TGCACGGCAGATATGTTTTTCTC 59.873 43.478 0.00 0.00 33.32 2.87
1860 2639 3.785505 GCACGGCAGATATGTTTTTCTCG 60.786 47.826 0.00 0.00 0.00 4.04
1861 2640 3.616821 CACGGCAGATATGTTTTTCTCGA 59.383 43.478 0.00 0.00 0.00 4.04
2024 2860 0.606401 ACTCCAACGGGCACAATCTG 60.606 55.000 0.00 0.00 0.00 2.90
2124 3047 4.658786 AGAACCGGGTGGAGGGCT 62.659 66.667 6.32 0.00 39.21 5.19
2380 3306 1.235724 GCCAAGAAGCAGGTACGTTT 58.764 50.000 0.00 0.00 0.00 3.60
2381 3307 1.069227 GCCAAGAAGCAGGTACGTTTG 60.069 52.381 0.00 0.00 0.00 2.93
2382 3308 2.489971 CCAAGAAGCAGGTACGTTTGA 58.510 47.619 0.00 0.00 0.00 2.69
2383 3309 2.223377 CCAAGAAGCAGGTACGTTTGAC 59.777 50.000 0.00 0.00 0.00 3.18
2406 3332 1.076118 CCATGCATGGCCCCTACAA 60.076 57.895 31.95 0.00 41.75 2.41
2410 3336 0.972883 TGCATGGCCCCTACAAAAAC 59.027 50.000 0.00 0.00 0.00 2.43
2411 3337 0.249120 GCATGGCCCCTACAAAAACC 59.751 55.000 0.00 0.00 0.00 3.27
2426 3357 5.550290 ACAAAAACCATTAAGATTGGCAGG 58.450 37.500 0.00 0.00 37.81 4.85
2427 3358 5.306678 ACAAAAACCATTAAGATTGGCAGGA 59.693 36.000 0.00 0.00 37.81 3.86
2455 3386 0.611618 ATCGGTCATTTTGGCTGGCA 60.612 50.000 0.00 0.00 0.00 4.92
2837 3778 1.262950 TGCGATGGTTGAACTTGAACG 59.737 47.619 0.00 0.00 0.00 3.95
2844 3785 3.810941 TGGTTGAACTTGAACGGTGTATC 59.189 43.478 0.00 0.00 0.00 2.24
2845 3786 4.062991 GGTTGAACTTGAACGGTGTATCT 58.937 43.478 0.00 0.00 0.00 1.98
2846 3787 4.084013 GGTTGAACTTGAACGGTGTATCTG 60.084 45.833 0.00 0.00 0.00 2.90
2847 3788 4.330944 TGAACTTGAACGGTGTATCTGT 57.669 40.909 0.00 0.00 37.22 3.41
2848 3789 4.055360 TGAACTTGAACGGTGTATCTGTG 58.945 43.478 0.00 0.00 35.59 3.66
2849 3790 3.746045 ACTTGAACGGTGTATCTGTGT 57.254 42.857 0.00 0.00 35.59 3.72
2850 3791 4.859304 ACTTGAACGGTGTATCTGTGTA 57.141 40.909 0.00 0.00 35.59 2.90
2851 3792 5.401531 ACTTGAACGGTGTATCTGTGTAT 57.598 39.130 0.00 0.00 35.59 2.29
2864 3805 8.371053 GTGTATCTGTGTATGTACGAGTTTTTC 58.629 37.037 0.00 0.00 0.00 2.29
2868 3809 8.428186 TCTGTGTATGTACGAGTTTTTCTTTT 57.572 30.769 0.00 0.00 0.00 2.27
2892 3833 3.060602 GCTTGCTAAAACTCAGTCGACT 58.939 45.455 13.58 13.58 0.00 4.18
2933 3874 6.038603 GTCTCAGTCAATTGCATAGCCATTAA 59.961 38.462 0.00 0.00 0.00 1.40
2936 3877 7.784037 TCAGTCAATTGCATAGCCATTAAATT 58.216 30.769 0.00 0.00 0.00 1.82
2951 3916 5.581874 CCATTAAATTTGAGCACCATCCAAC 59.418 40.000 0.00 0.00 0.00 3.77
2958 3923 2.332654 GCACCATCCAACGGACCAC 61.333 63.158 0.00 0.00 32.98 4.16
2994 4094 4.072131 ACACCGTTTGCAACATATCTTCT 58.928 39.130 0.00 0.00 0.00 2.85
2996 4096 4.853196 CACCGTTTGCAACATATCTTCTTG 59.147 41.667 0.00 0.00 0.00 3.02
2997 4097 4.518970 ACCGTTTGCAACATATCTTCTTGT 59.481 37.500 0.00 0.00 0.00 3.16
3005 4105 5.163513 CAACATATCTTCTTGTTGGTTGGC 58.836 41.667 7.69 0.00 45.63 4.52
3011 4111 0.537143 TCTTGTTGGTTGGCGCATCT 60.537 50.000 10.83 0.00 0.00 2.90
3046 4705 8.243426 GGTTGTAGCATTTTATTTCATCAGACA 58.757 33.333 0.00 0.00 0.00 3.41
3057 4716 5.518848 TTTCATCAGACACAACATTTGCT 57.481 34.783 0.00 0.00 0.00 3.91
3076 4735 2.092838 GCTCTCGTTGATTGTAGCACAC 59.907 50.000 0.00 0.00 0.00 3.82
3078 4737 2.036604 TCTCGTTGATTGTAGCACACCA 59.963 45.455 0.00 0.00 0.00 4.17
3089 4748 0.322975 AGCACACCATCTCACCAGTC 59.677 55.000 0.00 0.00 0.00 3.51
3097 4756 1.662629 CATCTCACCAGTCGCAACATC 59.337 52.381 0.00 0.00 0.00 3.06
3099 4758 0.320683 CTCACCAGTCGCAACATCCA 60.321 55.000 0.00 0.00 0.00 3.41
3100 4759 0.602638 TCACCAGTCGCAACATCCAC 60.603 55.000 0.00 0.00 0.00 4.02
3108 4767 3.378112 AGTCGCAACATCCACCATTAATG 59.622 43.478 8.58 8.58 0.00 1.90
3125 4784 6.183360 CCATTAATGGTTGCATCGTTTAGTCT 60.183 38.462 24.12 0.00 43.05 3.24
3126 4785 4.946784 AATGGTTGCATCGTTTAGTCTC 57.053 40.909 0.00 0.00 0.00 3.36
3130 4789 3.496884 GGTTGCATCGTTTAGTCTCAACA 59.503 43.478 0.00 0.00 35.40 3.33
3138 4797 5.526115 TCGTTTAGTCTCAACAGTTGTAGG 58.474 41.667 13.14 5.46 0.00 3.18
3144 4803 3.574826 GTCTCAACAGTTGTAGGGTCTCT 59.425 47.826 13.14 0.00 0.00 3.10
3150 4809 3.454812 ACAGTTGTAGGGTCTCTTGTTGT 59.545 43.478 0.00 0.00 0.00 3.32
3151 4810 4.080526 ACAGTTGTAGGGTCTCTTGTTGTT 60.081 41.667 0.00 0.00 0.00 2.83
3159 4818 2.542411 GGTCTCTTGTTGTTGCTTGCAG 60.542 50.000 0.00 0.00 0.00 4.41
3160 4819 1.066002 TCTCTTGTTGTTGCTTGCAGC 59.934 47.619 2.51 2.51 42.82 5.25
3169 4828 3.663176 GCTTGCAGCACCGCTCAA 61.663 61.111 0.00 0.00 41.89 3.02
3170 4829 2.253452 CTTGCAGCACCGCTCAAC 59.747 61.111 0.00 0.00 36.40 3.18
3171 4830 2.515757 TTGCAGCACCGCTCAACA 60.516 55.556 0.00 0.00 36.40 3.33
3190 4851 5.473846 TCAACATTTTTCATACCGGTAGCAA 59.526 36.000 20.91 11.88 0.00 3.91
3191 4852 5.305139 ACATTTTTCATACCGGTAGCAAC 57.695 39.130 20.91 0.00 0.00 4.17
3192 4853 5.007682 ACATTTTTCATACCGGTAGCAACT 58.992 37.500 20.91 0.00 0.00 3.16
3193 4854 5.106317 ACATTTTTCATACCGGTAGCAACTG 60.106 40.000 20.91 12.86 0.00 3.16
3198 4859 2.662596 CCGGTAGCAACTGGCAGA 59.337 61.111 23.66 0.00 45.18 4.26
3199 4860 1.448540 CCGGTAGCAACTGGCAGAG 60.449 63.158 23.66 14.16 45.18 3.35
3204 4865 2.064185 GTAGCAACTGGCAGAGCTACG 61.064 57.143 35.98 17.36 46.56 3.51
3205 4866 1.374758 GCAACTGGCAGAGCTACGT 60.375 57.895 23.66 0.00 43.97 3.57
3206 4867 0.951040 GCAACTGGCAGAGCTACGTT 60.951 55.000 23.66 0.09 43.97 3.99
3207 4868 0.792640 CAACTGGCAGAGCTACGTTG 59.207 55.000 23.66 10.28 0.00 4.10
3208 4869 0.679505 AACTGGCAGAGCTACGTTGA 59.320 50.000 23.66 0.00 0.00 3.18
3209 4870 0.244994 ACTGGCAGAGCTACGTTGAG 59.755 55.000 23.66 0.00 0.00 3.02
3210 4871 0.459237 CTGGCAGAGCTACGTTGAGG 60.459 60.000 9.42 0.00 0.00 3.86
3211 4872 1.811679 GGCAGAGCTACGTTGAGGC 60.812 63.158 0.00 0.00 0.00 4.70
3212 4873 1.079819 GCAGAGCTACGTTGAGGCA 60.080 57.895 0.00 0.00 0.00 4.75
3213 4874 0.670546 GCAGAGCTACGTTGAGGCAA 60.671 55.000 0.00 0.00 0.00 4.52
3214 4875 1.795768 CAGAGCTACGTTGAGGCAAA 58.204 50.000 0.00 0.00 0.00 3.68
3215 4876 2.143122 CAGAGCTACGTTGAGGCAAAA 58.857 47.619 0.00 0.00 0.00 2.44
3216 4877 2.096218 CAGAGCTACGTTGAGGCAAAAC 60.096 50.000 0.00 0.00 0.00 2.43
3217 4878 2.143925 GAGCTACGTTGAGGCAAAACT 58.856 47.619 0.00 0.00 0.00 2.66
3218 4879 3.006537 AGAGCTACGTTGAGGCAAAACTA 59.993 43.478 0.00 0.00 0.00 2.24
3219 4880 3.933332 GAGCTACGTTGAGGCAAAACTAT 59.067 43.478 0.00 0.00 0.00 2.12
3220 4881 3.684788 AGCTACGTTGAGGCAAAACTATG 59.315 43.478 0.00 0.00 0.00 2.23
3221 4882 2.989422 ACGTTGAGGCAAAACTATGC 57.011 45.000 0.00 0.00 45.67 3.14
3228 4889 3.367678 GCAAAACTATGCCATGGCC 57.632 52.632 33.44 16.23 40.49 5.36
3229 4890 0.179076 GCAAAACTATGCCATGGCCC 60.179 55.000 33.44 8.46 40.49 5.80
3230 4891 1.193323 CAAAACTATGCCATGGCCCA 58.807 50.000 33.44 19.71 41.09 5.36
3231 4892 1.134729 CAAAACTATGCCATGGCCCAC 60.135 52.381 33.44 7.24 41.09 4.61
3232 4893 0.687427 AAACTATGCCATGGCCCACC 60.687 55.000 33.44 6.83 41.09 4.61
3233 4894 2.203538 CTATGCCATGGCCCACCC 60.204 66.667 33.44 6.02 41.09 4.61
3241 4902 2.946774 TGGCCCACCCAATCCAAA 59.053 55.556 0.00 0.00 41.82 3.28
3242 4903 1.229145 TGGCCCACCCAATCCAAAG 60.229 57.895 0.00 0.00 41.82 2.77
3243 4904 2.659063 GGCCCACCCAATCCAAAGC 61.659 63.158 0.00 0.00 0.00 3.51
3244 4905 1.912763 GCCCACCCAATCCAAAGCA 60.913 57.895 0.00 0.00 0.00 3.91
3245 4906 1.479368 GCCCACCCAATCCAAAGCAA 61.479 55.000 0.00 0.00 0.00 3.91
3246 4907 1.278537 CCCACCCAATCCAAAGCAAT 58.721 50.000 0.00 0.00 0.00 3.56
3247 4908 1.629861 CCCACCCAATCCAAAGCAATT 59.370 47.619 0.00 0.00 0.00 2.32
3248 4909 2.616001 CCCACCCAATCCAAAGCAATTG 60.616 50.000 0.00 0.00 38.84 2.32
3249 4910 2.078392 CACCCAATCCAAAGCAATTGC 58.922 47.619 23.05 23.05 37.73 3.56
3259 4920 4.697828 TCCAAAGCAATTGCGTGAGTAATA 59.302 37.500 28.34 8.95 45.84 0.98
3260 4921 5.356751 TCCAAAGCAATTGCGTGAGTAATAT 59.643 36.000 28.34 7.69 45.84 1.28
3261 4922 5.456497 CCAAAGCAATTGCGTGAGTAATATG 59.544 40.000 28.34 17.00 45.84 1.78
3262 4923 4.214980 AGCAATTGCGTGAGTAATATGC 57.785 40.909 24.02 0.00 45.84 3.14
3263 4924 3.879295 AGCAATTGCGTGAGTAATATGCT 59.121 39.130 24.02 0.00 45.84 3.79
3264 4925 5.056480 AGCAATTGCGTGAGTAATATGCTA 58.944 37.500 24.02 0.00 46.63 3.49
3265 4926 5.050091 AGCAATTGCGTGAGTAATATGCTAC 60.050 40.000 24.02 0.00 46.63 3.58
3266 4927 5.050091 GCAATTGCGTGAGTAATATGCTACT 60.050 40.000 15.87 0.00 45.84 2.57
3267 4928 6.511767 GCAATTGCGTGAGTAATATGCTACTT 60.512 38.462 15.87 0.00 45.84 2.24
3268 4929 7.307160 GCAATTGCGTGAGTAATATGCTACTTA 60.307 37.037 15.87 0.00 45.84 2.24
3269 4930 7.875316 ATTGCGTGAGTAATATGCTACTTAG 57.125 36.000 0.00 0.00 44.72 2.18
3270 4931 6.387041 TGCGTGAGTAATATGCTACTTAGT 57.613 37.500 0.00 0.00 32.14 2.24
3271 4932 6.206498 TGCGTGAGTAATATGCTACTTAGTG 58.794 40.000 0.00 0.00 32.14 2.74
3272 4933 5.117287 GCGTGAGTAATATGCTACTTAGTGC 59.883 44.000 0.00 0.00 32.14 4.40
3273 4934 5.339875 CGTGAGTAATATGCTACTTAGTGCG 59.660 44.000 0.00 0.00 32.14 5.34
3274 4935 6.436261 GTGAGTAATATGCTACTTAGTGCGA 58.564 40.000 0.00 0.00 32.14 5.10
3275 4936 6.916387 GTGAGTAATATGCTACTTAGTGCGAA 59.084 38.462 0.00 0.00 32.14 4.70
3276 4937 7.434307 GTGAGTAATATGCTACTTAGTGCGAAA 59.566 37.037 0.00 0.00 32.14 3.46
3277 4938 7.977293 TGAGTAATATGCTACTTAGTGCGAAAA 59.023 33.333 0.00 0.00 32.14 2.29
3278 4939 8.712285 AGTAATATGCTACTTAGTGCGAAAAA 57.288 30.769 0.00 0.00 0.00 1.94
3279 4940 8.601476 AGTAATATGCTACTTAGTGCGAAAAAC 58.399 33.333 0.00 0.00 0.00 2.43
3280 4941 6.978343 ATATGCTACTTAGTGCGAAAAACA 57.022 33.333 0.00 0.00 0.00 2.83
3281 4942 5.682943 ATGCTACTTAGTGCGAAAAACAA 57.317 34.783 0.00 0.00 0.00 2.83
3282 4943 4.839796 TGCTACTTAGTGCGAAAAACAAC 58.160 39.130 0.00 0.00 0.00 3.32
3283 4944 3.898361 GCTACTTAGTGCGAAAAACAACG 59.102 43.478 0.00 0.00 0.00 4.10
3293 4954 3.400995 CGAAAAACAACGCCTATGTACG 58.599 45.455 0.00 0.00 0.00 3.67
3294 4955 3.121611 CGAAAAACAACGCCTATGTACGA 59.878 43.478 0.00 0.00 0.00 3.43
3295 4956 4.634991 GAAAAACAACGCCTATGTACGAG 58.365 43.478 0.00 0.00 0.00 4.18
3296 4957 3.308438 AAACAACGCCTATGTACGAGT 57.692 42.857 0.00 0.00 0.00 4.18
3297 4958 3.308438 AACAACGCCTATGTACGAGTT 57.692 42.857 0.00 0.00 0.00 3.01
3298 4959 4.439305 AACAACGCCTATGTACGAGTTA 57.561 40.909 0.00 0.00 32.53 2.24
3299 4960 4.439305 ACAACGCCTATGTACGAGTTAA 57.561 40.909 0.00 0.00 0.00 2.01
3300 4961 4.808558 ACAACGCCTATGTACGAGTTAAA 58.191 39.130 0.00 0.00 0.00 1.52
3301 4962 4.860907 ACAACGCCTATGTACGAGTTAAAG 59.139 41.667 0.00 0.00 0.00 1.85
3302 4963 3.442100 ACGCCTATGTACGAGTTAAAGC 58.558 45.455 0.00 0.00 0.00 3.51
3303 4964 3.119388 ACGCCTATGTACGAGTTAAAGCA 60.119 43.478 0.00 0.00 0.00 3.91
3304 4965 4.049186 CGCCTATGTACGAGTTAAAGCAT 58.951 43.478 0.00 0.00 0.00 3.79
3305 4966 5.217393 CGCCTATGTACGAGTTAAAGCATA 58.783 41.667 0.00 0.00 0.00 3.14
3306 4967 5.342525 CGCCTATGTACGAGTTAAAGCATAG 59.657 44.000 0.00 0.00 36.95 2.23
3307 4968 6.444633 GCCTATGTACGAGTTAAAGCATAGA 58.555 40.000 9.97 0.00 38.49 1.98
3308 4969 6.362820 GCCTATGTACGAGTTAAAGCATAGAC 59.637 42.308 9.97 0.00 38.49 2.59
3309 4970 7.649973 CCTATGTACGAGTTAAAGCATAGACT 58.350 38.462 9.97 0.00 38.49 3.24
3310 4971 7.591795 CCTATGTACGAGTTAAAGCATAGACTG 59.408 40.741 9.97 0.00 38.49 3.51
3311 4972 5.647589 TGTACGAGTTAAAGCATAGACTGG 58.352 41.667 0.00 0.00 0.00 4.00
3312 4973 4.803098 ACGAGTTAAAGCATAGACTGGT 57.197 40.909 0.00 0.00 37.10 4.00
3313 4974 4.745649 ACGAGTTAAAGCATAGACTGGTC 58.254 43.478 0.00 0.00 33.48 4.02
3314 4975 4.113354 CGAGTTAAAGCATAGACTGGTCC 58.887 47.826 0.00 0.00 33.48 4.46
3315 4976 4.113354 GAGTTAAAGCATAGACTGGTCCG 58.887 47.826 0.00 0.00 33.48 4.79
3316 4977 2.596904 TAAAGCATAGACTGGTCCGC 57.403 50.000 0.00 0.00 33.48 5.54
3317 4978 0.107654 AAAGCATAGACTGGTCCGCC 60.108 55.000 0.00 0.00 33.48 6.13
3318 4979 1.972660 AAGCATAGACTGGTCCGCCC 61.973 60.000 0.00 0.00 33.48 6.13
3319 4980 2.731571 GCATAGACTGGTCCGCCCA 61.732 63.158 0.00 0.00 42.51 5.36
3326 4987 3.246687 TGGTCCGCCCAGACTTTT 58.753 55.556 0.00 0.00 38.72 2.27
3327 4988 1.534697 TGGTCCGCCCAGACTTTTT 59.465 52.632 0.00 0.00 38.72 1.94
3328 4989 0.821711 TGGTCCGCCCAGACTTTTTG 60.822 55.000 0.00 0.00 38.72 2.44
3329 4990 0.822121 GGTCCGCCCAGACTTTTTGT 60.822 55.000 0.00 0.00 36.95 2.83
3330 4991 1.029681 GTCCGCCCAGACTTTTTGTT 58.970 50.000 0.00 0.00 33.79 2.83
3331 4992 1.028905 TCCGCCCAGACTTTTTGTTG 58.971 50.000 0.00 0.00 0.00 3.33
3332 4993 0.744281 CCGCCCAGACTTTTTGTTGT 59.256 50.000 0.00 0.00 0.00 3.32
3333 4994 1.950909 CCGCCCAGACTTTTTGTTGTA 59.049 47.619 0.00 0.00 0.00 2.41
3334 4995 2.031157 CCGCCCAGACTTTTTGTTGTAG 60.031 50.000 0.00 0.00 0.00 2.74
3335 4996 2.604614 CGCCCAGACTTTTTGTTGTAGC 60.605 50.000 0.00 0.00 0.00 3.58
3336 4997 2.623416 GCCCAGACTTTTTGTTGTAGCT 59.377 45.455 0.00 0.00 0.00 3.32
3337 4998 3.304726 GCCCAGACTTTTTGTTGTAGCTC 60.305 47.826 0.00 0.00 0.00 4.09
3338 4999 4.137543 CCCAGACTTTTTGTTGTAGCTCT 58.862 43.478 0.00 0.00 0.00 4.09
3339 5000 4.023707 CCCAGACTTTTTGTTGTAGCTCTG 60.024 45.833 0.00 0.00 0.00 3.35
3340 5001 4.531332 CAGACTTTTTGTTGTAGCTCTGC 58.469 43.478 0.00 0.00 0.00 4.26
3341 5002 3.565902 AGACTTTTTGTTGTAGCTCTGCC 59.434 43.478 0.00 0.00 0.00 4.85
3342 5003 2.290641 ACTTTTTGTTGTAGCTCTGCCG 59.709 45.455 0.00 0.00 0.00 5.69
3343 5004 0.591170 TTTTGTTGTAGCTCTGCCGC 59.409 50.000 0.00 0.00 0.00 6.53
3344 5005 0.250295 TTTGTTGTAGCTCTGCCGCT 60.250 50.000 0.00 0.00 43.83 5.52
3345 5006 0.950555 TTGTTGTAGCTCTGCCGCTG 60.951 55.000 0.00 0.00 41.12 5.18
3346 5007 2.434884 TTGTAGCTCTGCCGCTGC 60.435 61.111 0.00 0.00 41.12 5.25
3347 5008 3.958147 TTGTAGCTCTGCCGCTGCC 62.958 63.158 0.00 0.00 41.21 4.85
3366 5027 2.100252 GCCGGTAGCACATCTAGTTGTA 59.900 50.000 1.90 0.00 42.97 2.41
3368 5029 3.380637 CCGGTAGCACATCTAGTTGTACT 59.619 47.826 10.75 10.75 0.00 2.73
3372 5033 4.116747 AGCACATCTAGTTGTACTGCTC 57.883 45.455 6.13 0.00 0.00 4.26
3377 5038 5.739630 CACATCTAGTTGTACTGCTCGTAAG 59.260 44.000 6.13 0.00 0.00 2.34
3380 5041 4.999311 TCTAGTTGTACTGCTCGTAAGACA 59.001 41.667 0.00 0.00 45.01 3.41
3389 5050 4.202080 ACTGCTCGTAAGACAACAACTACA 60.202 41.667 0.00 0.00 45.01 2.74
3391 5052 3.427863 GCTCGTAAGACAACAACTACACC 59.572 47.826 0.00 0.00 45.01 4.16
3398 5059 1.406539 ACAACAACTACACCGACGTCT 59.593 47.619 14.70 0.00 0.00 4.18
3414 5075 3.661944 ACGTCTCTCGACTTAAGTCTCA 58.338 45.455 28.30 16.31 42.66 3.27
3415 5076 4.063689 ACGTCTCTCGACTTAAGTCTCAA 58.936 43.478 28.30 15.33 42.66 3.02
3422 5083 4.971008 TCGACTTAAGTCTCAATCGACTG 58.029 43.478 28.30 12.30 43.14 3.51
3424 5085 5.180680 TCGACTTAAGTCTCAATCGACTGAA 59.819 40.000 28.30 1.20 43.14 3.02
3427 5088 7.253486 CGACTTAAGTCTCAATCGACTGAATTC 60.253 40.741 28.30 0.00 43.14 2.17
3441 5102 5.153950 ACTGAATTCTAGACACACCCTTC 57.846 43.478 7.05 0.00 0.00 3.46
3446 5107 3.936372 TCTAGACACACCCTTCTTTCG 57.064 47.619 0.00 0.00 0.00 3.46
3448 5109 4.087182 TCTAGACACACCCTTCTTTCGAT 58.913 43.478 0.00 0.00 0.00 3.59
3482 5143 5.185442 TGTGCATGCATAGGATCTTCAAAAA 59.815 36.000 25.64 0.00 0.00 1.94
3485 5146 6.153170 TGCATGCATAGGATCTTCAAAAAGAA 59.847 34.615 18.46 0.00 44.49 2.52
3486 5147 7.037438 GCATGCATAGGATCTTCAAAAAGAAA 58.963 34.615 14.21 0.00 44.49 2.52
3487 5148 7.222224 GCATGCATAGGATCTTCAAAAAGAAAG 59.778 37.037 14.21 0.00 44.49 2.62
3489 5150 8.408043 TGCATAGGATCTTCAAAAAGAAAGAA 57.592 30.769 0.00 0.00 44.49 2.52
3490 5151 9.028284 TGCATAGGATCTTCAAAAAGAAAGAAT 57.972 29.630 0.00 0.00 44.49 2.40
3491 5152 9.866798 GCATAGGATCTTCAAAAAGAAAGAATT 57.133 29.630 0.00 0.00 44.49 2.17
3525 5186 7.628234 ACTGATTAGTCATGATGTCCTCTTTT 58.372 34.615 0.00 0.00 32.98 2.27
3575 5236 8.026341 AGAAAGTATCTTTTTACGTGCCTTAC 57.974 34.615 0.00 0.00 33.39 2.34
3590 5251 6.283161 GTGCCTTACGGTATATTTTGTCTC 57.717 41.667 0.00 0.00 0.00 3.36
3596 5257 7.813148 CCTTACGGTATATTTTGTCTCGATGAT 59.187 37.037 0.00 0.00 0.00 2.45
3598 5259 9.836076 TTACGGTATATTTTGTCTCGATGATAG 57.164 33.333 0.00 0.00 0.00 2.08
3609 5270 5.305386 TGTCTCGATGATAGATTTGGATGGT 59.695 40.000 0.00 0.00 0.00 3.55
3612 5273 5.928976 TCGATGATAGATTTGGATGGTTGT 58.071 37.500 0.00 0.00 0.00 3.32
3617 5278 3.524095 AGATTTGGATGGTTGTGGACA 57.476 42.857 0.00 0.00 0.00 4.02
3621 5282 3.454719 TTGGATGGTTGTGGACATCAT 57.545 42.857 6.94 0.00 44.01 2.45
3622 5283 3.003394 TGGATGGTTGTGGACATCATC 57.997 47.619 6.94 11.91 44.01 2.92
3628 5289 5.178096 TGGTTGTGGACATCATCAACTAT 57.822 39.130 13.84 0.00 37.45 2.12
3701 5377 7.325660 TCTGGTTCAGATGATAAATTTGAGC 57.674 36.000 0.00 0.00 35.39 4.26
3706 5382 6.122850 TCAGATGATAAATTTGAGCGGTTG 57.877 37.500 0.00 0.00 0.00 3.77
3725 5401 2.050918 TGTGGACATCACCAACTACCA 58.949 47.619 0.00 0.00 45.48 3.25
3774 5450 9.319143 TGTTTGGTTTGTAAAAACTAATGGATG 57.681 29.630 8.01 0.00 34.02 3.51
3775 5451 9.535878 GTTTGGTTTGTAAAAACTAATGGATGA 57.464 29.630 8.01 0.00 34.02 2.92
3777 5453 9.703892 TTGGTTTGTAAAAACTAATGGATGATG 57.296 29.630 8.41 0.00 29.93 3.07
3778 5454 9.083422 TGGTTTGTAAAAACTAATGGATGATGA 57.917 29.630 8.41 0.00 33.37 2.92
3787 5463 7.912056 AACTAATGGATGATGATATTCACGG 57.088 36.000 0.00 0.00 0.00 4.94
3788 5464 7.009179 ACTAATGGATGATGATATTCACGGT 57.991 36.000 0.00 0.00 0.00 4.83
3789 5465 7.099764 ACTAATGGATGATGATATTCACGGTC 58.900 38.462 0.00 0.00 0.00 4.79
3790 5466 4.953940 TGGATGATGATATTCACGGTCA 57.046 40.909 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.903454 AATCCCGGTTCGTCTGACCT 60.903 55.000 0.00 0.00 34.95 3.85
1 2 0.739813 CAATCCCGGTTCGTCTGACC 60.740 60.000 0.00 0.00 0.00 4.02
2 3 0.739813 CCAATCCCGGTTCGTCTGAC 60.740 60.000 0.00 0.00 0.00 3.51
3 4 1.189524 ACCAATCCCGGTTCGTCTGA 61.190 55.000 0.00 0.00 34.91 3.27
4 5 1.019278 CACCAATCCCGGTTCGTCTG 61.019 60.000 0.00 0.00 37.07 3.51
5 6 1.295423 CACCAATCCCGGTTCGTCT 59.705 57.895 0.00 0.00 37.07 4.18
6 7 1.004200 ACACCAATCCCGGTTCGTC 60.004 57.895 0.00 0.00 37.07 4.20
7 8 1.004200 GACACCAATCCCGGTTCGT 60.004 57.895 0.00 0.00 37.07 3.85
8 9 0.533491 TAGACACCAATCCCGGTTCG 59.467 55.000 0.00 0.00 37.07 3.95
9 10 1.406477 GGTAGACACCAATCCCGGTTC 60.406 57.143 0.00 0.00 45.04 3.62
10 11 0.616891 GGTAGACACCAATCCCGGTT 59.383 55.000 0.00 0.00 45.04 4.44
11 12 2.293877 GGTAGACACCAATCCCGGT 58.706 57.895 0.00 0.00 45.04 5.28
20 21 1.299976 CCAGGCCTTGGTAGACACC 59.700 63.158 0.00 0.00 46.00 4.16
50 51 4.021925 AGTCCCGGGTCAAGCAGC 62.022 66.667 22.86 1.88 0.00 5.25
51 52 1.903877 ATCAGTCCCGGGTCAAGCAG 61.904 60.000 22.86 4.96 0.00 4.24
52 53 1.918293 ATCAGTCCCGGGTCAAGCA 60.918 57.895 22.86 0.00 0.00 3.91
53 54 1.450312 CATCAGTCCCGGGTCAAGC 60.450 63.158 22.86 7.01 0.00 4.01
54 55 1.450312 GCATCAGTCCCGGGTCAAG 60.450 63.158 22.86 12.08 0.00 3.02
55 56 2.220586 TGCATCAGTCCCGGGTCAA 61.221 57.895 22.86 7.91 0.00 3.18
56 57 2.606213 TGCATCAGTCCCGGGTCA 60.606 61.111 22.86 0.00 0.00 4.02
57 58 2.125106 GTGCATCAGTCCCGGGTC 60.125 66.667 22.86 16.35 0.00 4.46
58 59 3.717294 GGTGCATCAGTCCCGGGT 61.717 66.667 22.86 0.00 0.00 5.28
59 60 4.489771 GGGTGCATCAGTCCCGGG 62.490 72.222 16.85 16.85 0.00 5.73
60 61 2.556840 AATGGGTGCATCAGTCCCGG 62.557 60.000 0.00 0.00 43.75 5.73
61 62 0.180171 TAATGGGTGCATCAGTCCCG 59.820 55.000 0.00 0.00 43.75 5.14
62 63 1.212935 ACTAATGGGTGCATCAGTCCC 59.787 52.381 0.00 0.00 41.41 4.46
63 64 2.565841 GACTAATGGGTGCATCAGTCC 58.434 52.381 0.00 0.00 0.00 3.85
64 65 2.565841 GGACTAATGGGTGCATCAGTC 58.434 52.381 6.63 6.63 33.31 3.51
65 66 1.212935 GGGACTAATGGGTGCATCAGT 59.787 52.381 0.00 0.00 0.00 3.41
66 67 1.212688 TGGGACTAATGGGTGCATCAG 59.787 52.381 0.00 0.00 0.00 2.90
67 68 1.212688 CTGGGACTAATGGGTGCATCA 59.787 52.381 0.00 0.00 0.00 3.07
68 69 1.212935 ACTGGGACTAATGGGTGCATC 59.787 52.381 0.00 0.00 0.00 3.91
69 70 1.298953 ACTGGGACTAATGGGTGCAT 58.701 50.000 0.00 0.00 0.00 3.96
70 71 1.004277 GAACTGGGACTAATGGGTGCA 59.996 52.381 0.00 0.00 0.00 4.57
71 72 1.751437 GAACTGGGACTAATGGGTGC 58.249 55.000 0.00 0.00 0.00 5.01
72 73 1.278127 ACGAACTGGGACTAATGGGTG 59.722 52.381 0.00 0.00 0.00 4.61
73 74 1.652947 ACGAACTGGGACTAATGGGT 58.347 50.000 0.00 0.00 0.00 4.51
74 75 3.899052 TTACGAACTGGGACTAATGGG 57.101 47.619 0.00 0.00 0.00 4.00
75 76 6.755206 TCATATTACGAACTGGGACTAATGG 58.245 40.000 0.00 0.00 0.00 3.16
76 77 7.273598 CGATCATATTACGAACTGGGACTAATG 59.726 40.741 0.00 0.00 0.00 1.90
77 78 7.176165 TCGATCATATTACGAACTGGGACTAAT 59.824 37.037 0.00 0.00 33.20 1.73
78 79 6.487668 TCGATCATATTACGAACTGGGACTAA 59.512 38.462 0.00 0.00 33.20 2.24
79 80 5.999600 TCGATCATATTACGAACTGGGACTA 59.000 40.000 0.00 0.00 33.20 2.59
80 81 4.825634 TCGATCATATTACGAACTGGGACT 59.174 41.667 0.00 0.00 33.20 3.85
81 82 5.048921 TCTCGATCATATTACGAACTGGGAC 60.049 44.000 0.00 0.00 35.70 4.46
82 83 5.048921 GTCTCGATCATATTACGAACTGGGA 60.049 44.000 0.00 0.00 35.70 4.37
83 84 5.048643 AGTCTCGATCATATTACGAACTGGG 60.049 44.000 0.00 0.00 35.70 4.45
84 85 6.003234 AGTCTCGATCATATTACGAACTGG 57.997 41.667 0.00 0.00 35.70 4.00
85 86 9.056306 CATTAGTCTCGATCATATTACGAACTG 57.944 37.037 0.00 0.00 35.70 3.16
86 87 7.751348 GCATTAGTCTCGATCATATTACGAACT 59.249 37.037 0.00 0.00 35.70 3.01
87 88 7.751348 AGCATTAGTCTCGATCATATTACGAAC 59.249 37.037 0.00 0.00 35.70 3.95
88 89 7.817641 AGCATTAGTCTCGATCATATTACGAA 58.182 34.615 0.00 0.00 35.70 3.85
89 90 7.379098 AGCATTAGTCTCGATCATATTACGA 57.621 36.000 0.00 0.00 34.90 3.43
90 91 9.163903 CATAGCATTAGTCTCGATCATATTACG 57.836 37.037 0.00 0.00 0.00 3.18
93 94 9.964303 GATCATAGCATTAGTCTCGATCATATT 57.036 33.333 0.00 0.00 0.00 1.28
94 95 9.353431 AGATCATAGCATTAGTCTCGATCATAT 57.647 33.333 0.00 0.00 32.35 1.78
95 96 8.619546 CAGATCATAGCATTAGTCTCGATCATA 58.380 37.037 0.00 0.00 32.35 2.15
96 97 7.338957 TCAGATCATAGCATTAGTCTCGATCAT 59.661 37.037 0.00 0.00 32.35 2.45
97 98 6.656693 TCAGATCATAGCATTAGTCTCGATCA 59.343 38.462 0.00 0.00 32.35 2.92
98 99 6.966632 GTCAGATCATAGCATTAGTCTCGATC 59.033 42.308 0.00 0.00 0.00 3.69
99 100 6.127758 GGTCAGATCATAGCATTAGTCTCGAT 60.128 42.308 0.00 0.00 0.00 3.59
100 101 5.182190 GGTCAGATCATAGCATTAGTCTCGA 59.818 44.000 0.00 0.00 0.00 4.04
101 102 5.048434 TGGTCAGATCATAGCATTAGTCTCG 60.048 44.000 0.00 0.00 0.00 4.04
102 103 6.338214 TGGTCAGATCATAGCATTAGTCTC 57.662 41.667 0.00 0.00 0.00 3.36
103 104 5.245751 CCTGGTCAGATCATAGCATTAGTCT 59.754 44.000 0.00 0.00 0.00 3.24
104 105 5.244851 TCCTGGTCAGATCATAGCATTAGTC 59.755 44.000 0.00 0.00 0.00 2.59
105 106 5.011533 GTCCTGGTCAGATCATAGCATTAGT 59.988 44.000 0.00 0.00 0.00 2.24
106 107 5.477510 GTCCTGGTCAGATCATAGCATTAG 58.522 45.833 0.00 0.00 0.00 1.73
107 108 4.284490 GGTCCTGGTCAGATCATAGCATTA 59.716 45.833 0.00 0.00 0.00 1.90
108 109 3.072184 GGTCCTGGTCAGATCATAGCATT 59.928 47.826 0.00 0.00 0.00 3.56
109 110 2.636893 GGTCCTGGTCAGATCATAGCAT 59.363 50.000 0.00 0.00 0.00 3.79
110 111 2.042464 GGTCCTGGTCAGATCATAGCA 58.958 52.381 0.00 0.00 0.00 3.49
111 112 2.042464 TGGTCCTGGTCAGATCATAGC 58.958 52.381 0.00 0.00 0.00 2.97
112 113 4.760530 TTTGGTCCTGGTCAGATCATAG 57.239 45.455 0.00 0.00 0.00 2.23
113 114 4.324254 GGTTTTGGTCCTGGTCAGATCATA 60.324 45.833 0.00 0.00 0.00 2.15
114 115 3.562176 GGTTTTGGTCCTGGTCAGATCAT 60.562 47.826 0.00 0.00 0.00 2.45
115 116 2.224769 GGTTTTGGTCCTGGTCAGATCA 60.225 50.000 0.00 0.00 0.00 2.92
116 117 2.437413 GGTTTTGGTCCTGGTCAGATC 58.563 52.381 0.00 0.00 0.00 2.75
117 118 1.075536 GGGTTTTGGTCCTGGTCAGAT 59.924 52.381 0.00 0.00 0.00 2.90
118 119 0.476771 GGGTTTTGGTCCTGGTCAGA 59.523 55.000 0.00 0.00 0.00 3.27
119 120 0.478507 AGGGTTTTGGTCCTGGTCAG 59.521 55.000 0.00 0.00 31.11 3.51
120 121 0.184933 CAGGGTTTTGGTCCTGGTCA 59.815 55.000 0.00 0.00 44.99 4.02
121 122 3.036431 CAGGGTTTTGGTCCTGGTC 57.964 57.895 0.00 0.00 44.99 4.02
125 126 3.398318 AGAAAACAGGGTTTTGGTCCT 57.602 42.857 11.41 0.75 0.00 3.85
126 127 3.319972 GGTAGAAAACAGGGTTTTGGTCC 59.680 47.826 11.41 7.11 0.00 4.46
127 128 3.955551 TGGTAGAAAACAGGGTTTTGGTC 59.044 43.478 11.41 0.00 0.00 4.02
128 129 3.958147 CTGGTAGAAAACAGGGTTTTGGT 59.042 43.478 11.41 2.45 0.00 3.67
129 130 3.958147 ACTGGTAGAAAACAGGGTTTTGG 59.042 43.478 11.41 0.00 39.00 3.28
130 131 4.736464 GCACTGGTAGAAAACAGGGTTTTG 60.736 45.833 11.41 0.02 40.23 2.44
131 132 3.383505 GCACTGGTAGAAAACAGGGTTTT 59.616 43.478 6.78 6.78 40.23 2.43
132 133 2.956333 GCACTGGTAGAAAACAGGGTTT 59.044 45.455 0.00 0.00 40.23 3.27
133 134 2.092103 TGCACTGGTAGAAAACAGGGTT 60.092 45.455 0.00 0.00 40.23 4.11
134 135 1.493022 TGCACTGGTAGAAAACAGGGT 59.507 47.619 0.00 0.00 40.23 4.34
135 136 2.270352 TGCACTGGTAGAAAACAGGG 57.730 50.000 0.00 0.00 41.03 4.45
136 137 3.476552 TCTTGCACTGGTAGAAAACAGG 58.523 45.455 0.00 0.00 39.00 4.00
137 138 5.009010 ACAATCTTGCACTGGTAGAAAACAG 59.991 40.000 0.00 0.00 40.48 3.16
138 139 4.887071 ACAATCTTGCACTGGTAGAAAACA 59.113 37.500 0.00 0.00 0.00 2.83
139 140 5.239525 AGACAATCTTGCACTGGTAGAAAAC 59.760 40.000 0.00 0.00 0.00 2.43
140 141 5.376625 AGACAATCTTGCACTGGTAGAAAA 58.623 37.500 0.00 0.00 0.00 2.29
141 142 4.973168 AGACAATCTTGCACTGGTAGAAA 58.027 39.130 0.00 0.00 0.00 2.52
142 143 4.284490 AGAGACAATCTTGCACTGGTAGAA 59.716 41.667 0.00 0.00 32.99 2.10
143 144 3.834813 AGAGACAATCTTGCACTGGTAGA 59.165 43.478 0.00 0.00 32.99 2.59
144 145 4.199432 AGAGACAATCTTGCACTGGTAG 57.801 45.455 0.00 0.00 32.99 3.18
145 146 4.772624 ACTAGAGACAATCTTGCACTGGTA 59.227 41.667 0.00 0.00 39.64 3.25
146 147 3.580458 ACTAGAGACAATCTTGCACTGGT 59.420 43.478 0.00 0.00 39.64 4.00
147 148 4.180057 GACTAGAGACAATCTTGCACTGG 58.820 47.826 0.00 0.00 39.64 4.00
148 149 4.814147 TGACTAGAGACAATCTTGCACTG 58.186 43.478 0.00 0.00 39.64 3.66
149 150 5.674052 ATGACTAGAGACAATCTTGCACT 57.326 39.130 0.00 0.00 39.64 4.40
150 151 5.457148 CGTATGACTAGAGACAATCTTGCAC 59.543 44.000 0.00 0.00 39.64 4.57
151 152 5.125578 ACGTATGACTAGAGACAATCTTGCA 59.874 40.000 0.00 0.00 39.64 4.08
152 153 5.583495 ACGTATGACTAGAGACAATCTTGC 58.417 41.667 0.00 0.00 39.64 4.01
153 154 6.693545 GGAACGTATGACTAGAGACAATCTTG 59.306 42.308 0.00 0.00 39.64 3.02
154 155 6.603997 AGGAACGTATGACTAGAGACAATCTT 59.396 38.462 0.00 0.00 39.64 2.40
155 156 6.123651 AGGAACGTATGACTAGAGACAATCT 58.876 40.000 0.00 0.00 42.47 2.40
156 157 6.380095 AGGAACGTATGACTAGAGACAATC 57.620 41.667 0.00 0.00 0.00 2.67
157 158 6.777213 AAGGAACGTATGACTAGAGACAAT 57.223 37.500 0.00 0.00 0.00 2.71
158 159 7.876936 ATAAGGAACGTATGACTAGAGACAA 57.123 36.000 0.00 0.00 30.53 3.18
170 171 5.392125 ACTAGTAGCCCATAAGGAACGTAT 58.608 41.667 0.00 0.00 38.24 3.06
171 172 4.796606 ACTAGTAGCCCATAAGGAACGTA 58.203 43.478 0.00 0.00 38.24 3.57
172 173 3.639952 ACTAGTAGCCCATAAGGAACGT 58.360 45.455 0.00 0.00 38.24 3.99
173 174 4.022503 GGTACTAGTAGCCCATAAGGAACG 60.023 50.000 19.33 0.00 38.24 3.95
174 175 4.897670 TGGTACTAGTAGCCCATAAGGAAC 59.102 45.833 25.25 2.70 38.24 3.62
175 176 5.146868 TGGTACTAGTAGCCCATAAGGAA 57.853 43.478 25.25 4.56 38.24 3.36
176 177 4.819702 TGGTACTAGTAGCCCATAAGGA 57.180 45.455 25.25 5.22 38.24 3.36
177 178 4.223032 CCATGGTACTAGTAGCCCATAAGG 59.777 50.000 25.25 17.47 35.95 2.69
178 179 4.322801 GCCATGGTACTAGTAGCCCATAAG 60.323 50.000 25.25 17.99 35.95 1.73
179 180 3.581332 GCCATGGTACTAGTAGCCCATAA 59.419 47.826 25.25 10.01 35.95 1.90
180 181 3.170717 GCCATGGTACTAGTAGCCCATA 58.829 50.000 25.25 10.35 35.95 2.74
181 182 1.978580 GCCATGGTACTAGTAGCCCAT 59.021 52.381 25.25 20.37 38.20 4.00
182 183 1.343580 TGCCATGGTACTAGTAGCCCA 60.344 52.381 25.25 19.18 32.93 5.36
183 184 1.344763 CTGCCATGGTACTAGTAGCCC 59.655 57.143 25.25 14.57 32.93 5.19
184 185 2.317040 TCTGCCATGGTACTAGTAGCC 58.683 52.381 25.25 18.23 32.93 3.93
185 186 4.099573 TCTTTCTGCCATGGTACTAGTAGC 59.900 45.833 22.42 22.42 0.00 3.58
186 187 5.361285 ACTCTTTCTGCCATGGTACTAGTAG 59.639 44.000 14.67 6.86 0.00 2.57
187 188 5.127194 CACTCTTTCTGCCATGGTACTAGTA 59.873 44.000 14.67 0.00 0.00 1.82
188 189 4.081420 CACTCTTTCTGCCATGGTACTAGT 60.081 45.833 14.67 0.00 0.00 2.57
189 190 4.160439 TCACTCTTTCTGCCATGGTACTAG 59.840 45.833 14.67 7.31 0.00 2.57
190 191 4.093743 TCACTCTTTCTGCCATGGTACTA 58.906 43.478 14.67 0.00 0.00 1.82
191 192 2.906389 TCACTCTTTCTGCCATGGTACT 59.094 45.455 14.67 0.00 0.00 2.73
192 193 3.334583 TCACTCTTTCTGCCATGGTAC 57.665 47.619 14.67 0.00 0.00 3.34
193 194 3.582647 TCTTCACTCTTTCTGCCATGGTA 59.417 43.478 14.67 8.24 0.00 3.25
194 195 2.373169 TCTTCACTCTTTCTGCCATGGT 59.627 45.455 14.67 0.00 0.00 3.55
195 196 2.746362 GTCTTCACTCTTTCTGCCATGG 59.254 50.000 7.63 7.63 0.00 3.66
196 197 3.405831 TGTCTTCACTCTTTCTGCCATG 58.594 45.455 0.00 0.00 0.00 3.66
197 198 3.558746 CCTGTCTTCACTCTTTCTGCCAT 60.559 47.826 0.00 0.00 0.00 4.40
198 199 2.224378 CCTGTCTTCACTCTTTCTGCCA 60.224 50.000 0.00 0.00 0.00 4.92
199 200 2.224402 ACCTGTCTTCACTCTTTCTGCC 60.224 50.000 0.00 0.00 0.00 4.85
200 201 3.118905 ACCTGTCTTCACTCTTTCTGC 57.881 47.619 0.00 0.00 0.00 4.26
201 202 3.249559 GCAACCTGTCTTCACTCTTTCTG 59.750 47.826 0.00 0.00 0.00 3.02
202 203 3.118261 TGCAACCTGTCTTCACTCTTTCT 60.118 43.478 0.00 0.00 0.00 2.52
257 258 4.796495 GGATTGGCCGCGGGACTT 62.796 66.667 29.38 1.60 0.00 3.01
273 274 3.411351 CGTTTGACTCACGGGCGG 61.411 66.667 0.00 0.00 33.86 6.13
293 294 4.405762 CGGCCGTCGCTAATTACA 57.594 55.556 19.50 0.00 34.44 2.41
337 580 6.822676 TGCTCCAGTTAACTAGAGTACTACTC 59.177 42.308 25.50 12.13 45.38 2.59
338 581 6.719301 TGCTCCAGTTAACTAGAGTACTACT 58.281 40.000 25.50 0.00 34.79 2.57
339 582 6.998968 TGCTCCAGTTAACTAGAGTACTAC 57.001 41.667 25.50 13.24 34.79 2.73
340 583 8.591114 ATTTGCTCCAGTTAACTAGAGTACTA 57.409 34.615 25.50 15.40 34.79 1.82
341 584 6.912951 TTTGCTCCAGTTAACTAGAGTACT 57.087 37.500 25.50 0.00 34.79 2.73
342 585 9.649167 TTAATTTGCTCCAGTTAACTAGAGTAC 57.351 33.333 25.50 14.38 34.79 2.73
343 586 9.871238 CTTAATTTGCTCCAGTTAACTAGAGTA 57.129 33.333 25.50 20.89 34.79 2.59
344 587 7.334671 GCTTAATTTGCTCCAGTTAACTAGAGT 59.665 37.037 25.50 12.55 34.79 3.24
345 588 7.334421 TGCTTAATTTGCTCCAGTTAACTAGAG 59.666 37.037 22.27 22.27 35.30 2.43
346 589 7.165485 TGCTTAATTTGCTCCAGTTAACTAGA 58.835 34.615 8.04 5.62 0.00 2.43
356 599 1.739466 CGCTCTGCTTAATTTGCTCCA 59.261 47.619 5.05 0.00 0.00 3.86
383 626 4.937620 TGATATATCCGTACGTAGTGGTCC 59.062 45.833 15.21 0.00 45.73 4.46
453 708 3.003480 AGAAGCAAGCGTCCATTTAGAC 58.997 45.455 4.39 0.00 0.00 2.59
561 821 2.943449 AACCCGATTTCGAGAGAGAC 57.057 50.000 0.67 0.00 43.69 3.36
571 1272 2.873133 TTTGTTGCGAAACCCGATTT 57.127 40.000 3.18 0.00 41.76 2.17
572 1273 2.873133 TTTTGTTGCGAAACCCGATT 57.127 40.000 3.18 0.00 41.76 3.34
583 1284 4.793071 ACTTTTTGGTTGCTTTTTGTTGC 58.207 34.783 0.00 0.00 0.00 4.17
587 1288 7.769272 TCTCATACTTTTTGGTTGCTTTTTG 57.231 32.000 0.00 0.00 0.00 2.44
605 1306 4.866508 AAGGTGACGACTTGTTCTCATA 57.133 40.909 0.00 0.00 0.00 2.15
677 1406 4.967437 GTACTAGACGAATATACGGGCAG 58.033 47.826 0.00 0.00 37.61 4.85
727 1456 1.561542 CTGTGGCCCTTGGTAGAGATT 59.438 52.381 0.00 0.00 0.00 2.40
728 1457 1.207791 CTGTGGCCCTTGGTAGAGAT 58.792 55.000 0.00 0.00 0.00 2.75
729 1458 0.178903 ACTGTGGCCCTTGGTAGAGA 60.179 55.000 0.00 0.00 0.00 3.10
730 1459 1.482593 CTACTGTGGCCCTTGGTAGAG 59.517 57.143 0.00 0.00 33.77 2.43
886 1618 2.480845 GTGGTATACATGGAAGGCGAC 58.519 52.381 5.01 0.00 0.00 5.19
940 1694 6.355747 ACTCCACGGTAGGACTATATATAGC 58.644 44.000 18.00 11.33 33.68 2.97
1026 1784 1.226717 GACGGCGATCAGGTGAGTC 60.227 63.158 16.62 0.00 0.00 3.36
1030 1788 2.105128 GAGGACGGCGATCAGGTG 59.895 66.667 16.62 0.00 0.00 4.00
1250 2012 1.614385 ACTCTCGTTAACGACATGCG 58.386 50.000 26.00 16.05 44.22 4.73
1759 2538 1.373497 CAACGGAGCTGAGCGAGTT 60.373 57.895 0.00 4.08 0.00 3.01
1822 2601 1.400142 CGTGCAGTTTCAGGTTGTTGA 59.600 47.619 0.00 0.00 0.00 3.18
1838 2617 3.685058 GAGAAAAACATATCTGCCGTGC 58.315 45.455 0.00 0.00 0.00 5.34
1839 2618 3.616821 TCGAGAAAAACATATCTGCCGTG 59.383 43.478 0.00 0.00 0.00 4.94
1840 2619 3.857052 TCGAGAAAAACATATCTGCCGT 58.143 40.909 0.00 0.00 0.00 5.68
1842 2621 6.024049 CAGTTTCGAGAAAAACATATCTGCC 58.976 40.000 0.00 0.00 40.77 4.85
1843 2622 5.509622 GCAGTTTCGAGAAAAACATATCTGC 59.490 40.000 14.64 14.64 40.77 4.26
1844 2623 6.521133 GTGCAGTTTCGAGAAAAACATATCTG 59.479 38.462 0.00 3.44 40.77 2.90
1845 2624 6.603095 GTGCAGTTTCGAGAAAAACATATCT 58.397 36.000 0.00 0.00 40.77 1.98
1846 2625 5.504755 CGTGCAGTTTCGAGAAAAACATATC 59.495 40.000 0.00 0.00 40.77 1.63
1847 2626 5.049680 ACGTGCAGTTTCGAGAAAAACATAT 60.050 36.000 1.06 0.00 40.77 1.78
1848 2627 4.271533 ACGTGCAGTTTCGAGAAAAACATA 59.728 37.500 1.06 0.00 40.77 2.29
1849 2628 3.064820 ACGTGCAGTTTCGAGAAAAACAT 59.935 39.130 1.06 0.00 40.77 2.71
1850 2629 2.417239 ACGTGCAGTTTCGAGAAAAACA 59.583 40.909 1.06 0.00 40.77 2.83
1851 2630 3.027029 GACGTGCAGTTTCGAGAAAAAC 58.973 45.455 0.00 0.00 39.03 2.43
1852 2631 2.673862 TGACGTGCAGTTTCGAGAAAAA 59.326 40.909 0.00 0.00 31.33 1.94
1853 2632 2.272678 TGACGTGCAGTTTCGAGAAAA 58.727 42.857 0.00 0.00 31.33 2.29
1854 2633 1.929230 TGACGTGCAGTTTCGAGAAA 58.071 45.000 0.00 0.00 0.00 2.52
1855 2634 1.591158 GTTGACGTGCAGTTTCGAGAA 59.409 47.619 0.00 0.00 0.00 2.87
1856 2635 1.205657 GTTGACGTGCAGTTTCGAGA 58.794 50.000 0.00 0.00 0.00 4.04
1857 2636 0.927537 TGTTGACGTGCAGTTTCGAG 59.072 50.000 0.00 0.00 0.00 4.04
1858 2637 0.648441 GTGTTGACGTGCAGTTTCGA 59.352 50.000 0.00 0.00 0.00 3.71
1859 2638 0.371989 TGTGTTGACGTGCAGTTTCG 59.628 50.000 0.00 0.00 0.00 3.46
1860 2639 2.173964 GTTGTGTTGACGTGCAGTTTC 58.826 47.619 0.00 0.00 0.00 2.78
1861 2640 1.537638 TGTTGTGTTGACGTGCAGTTT 59.462 42.857 0.00 0.00 0.00 2.66
2124 3047 3.707700 CGCCTTGTACGTGCGCAA 61.708 61.111 14.00 0.00 41.95 4.85
2153 3076 1.333177 GGACGAGGGAGCAGATGTAT 58.667 55.000 0.00 0.00 0.00 2.29
2195 3121 2.125512 CCTCCTGGCGTGTACTGC 60.126 66.667 0.00 0.00 0.00 4.40
2231 3157 3.699538 TCACGTACTCCATGTTGCTATCT 59.300 43.478 0.00 0.00 0.00 1.98
2234 3160 2.094390 GGTCACGTACTCCATGTTGCTA 60.094 50.000 0.00 0.00 0.00 3.49
2404 3330 5.792741 TCCTGCCAATCTTAATGGTTTTTG 58.207 37.500 0.00 0.00 40.23 2.44
2406 3332 4.467438 CCTCCTGCCAATCTTAATGGTTTT 59.533 41.667 0.00 0.00 40.23 2.43
2410 3336 3.484407 CTCCTCCTGCCAATCTTAATGG 58.516 50.000 0.00 0.00 41.08 3.16
2411 3337 3.484407 CCTCCTCCTGCCAATCTTAATG 58.516 50.000 0.00 0.00 0.00 1.90
2426 3357 0.755686 AATGACCGATGAGCCTCCTC 59.244 55.000 0.00 0.00 38.62 3.71
2427 3358 1.207791 AAATGACCGATGAGCCTCCT 58.792 50.000 0.00 0.00 0.00 3.69
2455 3386 1.898154 GGATGTAGTCCACCTGCGT 59.102 57.895 0.00 0.00 46.96 5.24
2798 3735 3.482923 CGCATACACATTTCGTTTACGCT 60.483 43.478 0.00 0.00 39.60 5.07
2837 3778 5.496133 ACTCGTACATACACAGATACACC 57.504 43.478 0.00 0.00 0.00 4.16
2846 3787 9.099820 GCTTAAAAGAAAAACTCGTACATACAC 57.900 33.333 0.00 0.00 0.00 2.90
2847 3788 9.048446 AGCTTAAAAGAAAAACTCGTACATACA 57.952 29.630 0.00 0.00 0.00 2.29
2848 3789 9.874215 AAGCTTAAAAGAAAAACTCGTACATAC 57.126 29.630 0.00 0.00 0.00 2.39
2849 3790 9.872757 CAAGCTTAAAAGAAAAACTCGTACATA 57.127 29.630 0.00 0.00 0.00 2.29
2850 3791 7.378728 GCAAGCTTAAAAGAAAAACTCGTACAT 59.621 33.333 0.00 0.00 0.00 2.29
2851 3792 6.689669 GCAAGCTTAAAAGAAAAACTCGTACA 59.310 34.615 0.00 0.00 0.00 2.90
2864 3805 6.575201 CGACTGAGTTTTAGCAAGCTTAAAAG 59.425 38.462 7.69 5.34 0.00 2.27
2868 3809 4.684703 GTCGACTGAGTTTTAGCAAGCTTA 59.315 41.667 8.70 0.00 0.00 3.09
2918 3859 6.480981 GTGCTCAAATTTAATGGCTATGCAAT 59.519 34.615 0.00 0.00 0.00 3.56
2933 3874 1.545582 CCGTTGGATGGTGCTCAAATT 59.454 47.619 0.00 0.00 0.00 1.82
2936 3877 0.605319 GTCCGTTGGATGGTGCTCAA 60.605 55.000 0.00 0.00 32.73 3.02
2951 3916 1.459592 GACAAATTGACGAGTGGTCCG 59.540 52.381 0.00 0.00 45.46 4.79
2958 3923 1.864711 ACGGTGTGACAAATTGACGAG 59.135 47.619 0.00 0.00 0.00 4.18
2994 4094 1.106351 ACAGATGCGCCAACCAACAA 61.106 50.000 4.18 0.00 0.00 2.83
2996 4096 1.210155 GACAGATGCGCCAACCAAC 59.790 57.895 4.18 0.00 0.00 3.77
2997 4097 0.537143 AAGACAGATGCGCCAACCAA 60.537 50.000 4.18 0.00 0.00 3.67
3031 4690 8.143193 AGCAAATGTTGTGTCTGATGAAATAAA 58.857 29.630 0.00 0.00 0.00 1.40
3033 4692 7.175467 AGAGCAAATGTTGTGTCTGATGAAATA 59.825 33.333 0.00 0.00 0.00 1.40
3034 4693 6.015688 AGAGCAAATGTTGTGTCTGATGAAAT 60.016 34.615 0.00 0.00 0.00 2.17
3036 4695 4.823442 AGAGCAAATGTTGTGTCTGATGAA 59.177 37.500 0.00 0.00 0.00 2.57
3039 4698 3.434641 CGAGAGCAAATGTTGTGTCTGAT 59.565 43.478 0.00 0.00 0.00 2.90
3046 4705 4.036734 ACAATCAACGAGAGCAAATGTTGT 59.963 37.500 10.37 0.00 41.74 3.32
3057 4716 2.036604 TGGTGTGCTACAATCAACGAGA 59.963 45.455 0.00 0.00 0.00 4.04
3076 4735 0.320683 TGTTGCGACTGGTGAGATGG 60.321 55.000 5.50 0.00 0.00 3.51
3078 4737 1.406069 GGATGTTGCGACTGGTGAGAT 60.406 52.381 5.50 0.00 0.00 2.75
3089 4748 3.082698 CCATTAATGGTGGATGTTGCG 57.917 47.619 24.12 0.00 43.05 4.85
3108 4767 3.496884 TGTTGAGACTAAACGATGCAACC 59.503 43.478 0.00 0.00 34.77 3.77
3115 4774 5.508489 CCCTACAACTGTTGAGACTAAACGA 60.508 44.000 26.00 0.00 0.00 3.85
3116 4775 4.684703 CCCTACAACTGTTGAGACTAAACG 59.315 45.833 26.00 5.67 0.00 3.60
3117 4776 5.608449 ACCCTACAACTGTTGAGACTAAAC 58.392 41.667 26.00 0.00 0.00 2.01
3125 4784 3.709653 ACAAGAGACCCTACAACTGTTGA 59.290 43.478 26.00 9.53 37.98 3.18
3126 4785 4.073293 ACAAGAGACCCTACAACTGTTG 57.927 45.455 18.44 18.44 39.60 3.33
3130 4789 4.451900 CAACAACAAGAGACCCTACAACT 58.548 43.478 0.00 0.00 0.00 3.16
3138 4797 1.405105 TGCAAGCAACAACAAGAGACC 59.595 47.619 0.00 0.00 0.00 3.85
3159 4818 2.132740 TGAAAAATGTTGAGCGGTGC 57.867 45.000 0.00 0.00 0.00 5.01
3160 4819 4.165779 GGTATGAAAAATGTTGAGCGGTG 58.834 43.478 0.00 0.00 0.00 4.94
3162 4821 3.425404 CGGTATGAAAAATGTTGAGCGG 58.575 45.455 0.00 0.00 0.00 5.52
3163 4822 3.119990 ACCGGTATGAAAAATGTTGAGCG 60.120 43.478 4.49 0.00 0.00 5.03
3167 4826 5.303747 TGCTACCGGTATGAAAAATGTTG 57.696 39.130 16.25 0.00 0.00 3.33
3168 4827 5.475564 AGTTGCTACCGGTATGAAAAATGTT 59.524 36.000 16.25 0.00 0.00 2.71
3169 4828 5.007682 AGTTGCTACCGGTATGAAAAATGT 58.992 37.500 16.25 0.00 0.00 2.71
3170 4829 5.331902 CAGTTGCTACCGGTATGAAAAATG 58.668 41.667 16.25 12.21 0.00 2.32
3171 4830 4.398044 CCAGTTGCTACCGGTATGAAAAAT 59.602 41.667 16.25 3.97 0.00 1.82
3190 4851 0.244994 CTCAACGTAGCTCTGCCAGT 59.755 55.000 0.00 0.00 0.00 4.00
3191 4852 0.459237 CCTCAACGTAGCTCTGCCAG 60.459 60.000 0.00 0.00 0.00 4.85
3192 4853 1.591703 CCTCAACGTAGCTCTGCCA 59.408 57.895 0.00 0.00 0.00 4.92
3193 4854 1.811679 GCCTCAACGTAGCTCTGCC 60.812 63.158 0.00 0.00 0.00 4.85
3194 4855 0.670546 TTGCCTCAACGTAGCTCTGC 60.671 55.000 0.00 0.00 0.00 4.26
3195 4856 1.795768 TTTGCCTCAACGTAGCTCTG 58.204 50.000 0.00 0.00 0.00 3.35
3196 4857 2.143925 GTTTTGCCTCAACGTAGCTCT 58.856 47.619 0.00 0.00 0.00 4.09
3197 4858 2.143925 AGTTTTGCCTCAACGTAGCTC 58.856 47.619 0.00 0.00 0.00 4.09
3198 4859 2.256117 AGTTTTGCCTCAACGTAGCT 57.744 45.000 0.00 0.00 0.00 3.32
3199 4860 3.727970 GCATAGTTTTGCCTCAACGTAGC 60.728 47.826 0.00 0.00 36.60 3.58
3200 4861 4.003519 GCATAGTTTTGCCTCAACGTAG 57.996 45.455 0.00 0.00 36.60 3.51
3202 4863 2.989422 GCATAGTTTTGCCTCAACGT 57.011 45.000 0.00 0.00 36.60 3.99
3210 4871 0.179076 GGGCCATGGCATAGTTTTGC 60.179 55.000 36.56 16.46 44.11 3.68
3211 4872 1.134729 GTGGGCCATGGCATAGTTTTG 60.135 52.381 36.56 0.00 44.11 2.44
3212 4873 1.194218 GTGGGCCATGGCATAGTTTT 58.806 50.000 36.56 0.00 44.11 2.43
3213 4874 0.687427 GGTGGGCCATGGCATAGTTT 60.687 55.000 36.56 0.00 44.11 2.66
3214 4875 1.076044 GGTGGGCCATGGCATAGTT 60.076 57.895 36.56 0.00 44.11 2.24
3215 4876 2.603008 GGTGGGCCATGGCATAGT 59.397 61.111 36.56 0.00 44.11 2.12
3216 4877 2.203538 GGGTGGGCCATGGCATAG 60.204 66.667 36.56 0.00 44.11 2.23
3217 4878 1.959007 ATTGGGTGGGCCATGGCATA 61.959 55.000 36.56 22.37 44.11 3.14
3218 4879 3.335410 ATTGGGTGGGCCATGGCAT 62.335 57.895 36.56 17.78 44.11 4.40
3219 4880 3.980333 GATTGGGTGGGCCATGGCA 62.980 63.158 36.56 16.33 44.11 4.92
3220 4881 3.156556 GATTGGGTGGGCCATGGC 61.157 66.667 29.47 29.47 41.06 4.40
3221 4882 2.444517 GGATTGGGTGGGCCATGG 60.445 66.667 10.70 7.63 36.17 3.66
3222 4883 0.908656 TTTGGATTGGGTGGGCCATG 60.909 55.000 10.70 0.00 36.17 3.66
3223 4884 0.618393 CTTTGGATTGGGTGGGCCAT 60.618 55.000 10.70 0.00 36.17 4.40
3224 4885 1.229145 CTTTGGATTGGGTGGGCCA 60.229 57.895 0.00 0.00 36.17 5.36
3225 4886 2.659063 GCTTTGGATTGGGTGGGCC 61.659 63.158 0.00 0.00 0.00 5.80
3226 4887 1.479368 TTGCTTTGGATTGGGTGGGC 61.479 55.000 0.00 0.00 0.00 5.36
3227 4888 1.278537 ATTGCTTTGGATTGGGTGGG 58.721 50.000 0.00 0.00 0.00 4.61
3228 4889 2.702261 CAATTGCTTTGGATTGGGTGG 58.298 47.619 0.00 0.00 31.28 4.61
3229 4890 2.078392 GCAATTGCTTTGGATTGGGTG 58.922 47.619 23.21 0.00 38.21 4.61
3230 4891 1.338011 CGCAATTGCTTTGGATTGGGT 60.338 47.619 26.86 0.00 39.76 4.51
3231 4892 1.338011 ACGCAATTGCTTTGGATTGGG 60.338 47.619 26.86 10.51 45.91 4.12
3232 4893 1.727880 CACGCAATTGCTTTGGATTGG 59.272 47.619 26.86 11.21 39.32 3.16
3233 4894 2.664568 CTCACGCAATTGCTTTGGATTG 59.335 45.455 26.86 11.90 39.32 2.67
3234 4895 2.297033 ACTCACGCAATTGCTTTGGATT 59.703 40.909 26.86 10.72 39.32 3.01
3235 4896 1.888512 ACTCACGCAATTGCTTTGGAT 59.111 42.857 26.86 12.66 39.32 3.41
3236 4897 1.317613 ACTCACGCAATTGCTTTGGA 58.682 45.000 26.86 16.76 39.32 3.53
3237 4898 2.987413 TACTCACGCAATTGCTTTGG 57.013 45.000 26.86 14.38 39.32 3.28
3238 4899 5.052172 GCATATTACTCACGCAATTGCTTTG 60.052 40.000 26.86 22.11 39.32 2.77
3239 4900 5.036737 GCATATTACTCACGCAATTGCTTT 58.963 37.500 26.86 11.92 39.32 3.51
3240 4901 4.336433 AGCATATTACTCACGCAATTGCTT 59.664 37.500 26.86 16.40 34.47 3.91
3241 4902 3.879295 AGCATATTACTCACGCAATTGCT 59.121 39.130 26.86 11.33 39.32 3.91
3242 4903 4.214980 AGCATATTACTCACGCAATTGC 57.785 40.909 20.76 20.76 37.78 3.56
3243 4904 6.530913 AGTAGCATATTACTCACGCAATTG 57.469 37.500 0.00 0.00 0.00 2.32
3244 4905 7.926555 ACTAAGTAGCATATTACTCACGCAATT 59.073 33.333 0.00 0.00 32.84 2.32
3245 4906 7.382488 CACTAAGTAGCATATTACTCACGCAAT 59.618 37.037 0.00 0.00 32.84 3.56
3246 4907 6.695713 CACTAAGTAGCATATTACTCACGCAA 59.304 38.462 0.00 0.00 32.84 4.85
3247 4908 6.206498 CACTAAGTAGCATATTACTCACGCA 58.794 40.000 0.00 0.00 32.84 5.24
3248 4909 5.117287 GCACTAAGTAGCATATTACTCACGC 59.883 44.000 0.00 0.00 32.84 5.34
3249 4910 5.339875 CGCACTAAGTAGCATATTACTCACG 59.660 44.000 0.00 0.00 32.84 4.35
3250 4911 6.436261 TCGCACTAAGTAGCATATTACTCAC 58.564 40.000 0.00 0.00 32.84 3.51
3251 4912 6.628919 TCGCACTAAGTAGCATATTACTCA 57.371 37.500 0.00 0.00 32.84 3.41
3252 4913 7.925703 TTTCGCACTAAGTAGCATATTACTC 57.074 36.000 0.00 0.00 32.84 2.59
3253 4914 8.601476 GTTTTTCGCACTAAGTAGCATATTACT 58.399 33.333 0.00 0.00 35.44 2.24
3254 4915 8.385111 TGTTTTTCGCACTAAGTAGCATATTAC 58.615 33.333 0.00 0.00 0.00 1.89
3255 4916 8.481974 TGTTTTTCGCACTAAGTAGCATATTA 57.518 30.769 0.00 0.00 0.00 0.98
3256 4917 7.372451 TGTTTTTCGCACTAAGTAGCATATT 57.628 32.000 0.00 0.00 0.00 1.28
3257 4918 6.978343 TGTTTTTCGCACTAAGTAGCATAT 57.022 33.333 0.00 0.00 0.00 1.78
3258 4919 6.595794 GTTGTTTTTCGCACTAAGTAGCATA 58.404 36.000 0.00 0.00 0.00 3.14
3259 4920 5.449304 GTTGTTTTTCGCACTAAGTAGCAT 58.551 37.500 0.00 0.00 0.00 3.79
3260 4921 4.551217 CGTTGTTTTTCGCACTAAGTAGCA 60.551 41.667 0.00 0.00 0.00 3.49
3261 4922 3.898361 CGTTGTTTTTCGCACTAAGTAGC 59.102 43.478 0.00 0.00 0.00 3.58
3272 4933 3.121611 TCGTACATAGGCGTTGTTTTTCG 59.878 43.478 0.80 3.16 0.00 3.46
3273 4934 4.151157 ACTCGTACATAGGCGTTGTTTTTC 59.849 41.667 0.80 0.00 0.00 2.29
3274 4935 4.060205 ACTCGTACATAGGCGTTGTTTTT 58.940 39.130 0.80 0.00 0.00 1.94
3275 4936 3.656559 ACTCGTACATAGGCGTTGTTTT 58.343 40.909 0.80 0.00 0.00 2.43
3276 4937 3.308438 ACTCGTACATAGGCGTTGTTT 57.692 42.857 0.80 0.00 0.00 2.83
3277 4938 3.308438 AACTCGTACATAGGCGTTGTT 57.692 42.857 0.80 0.00 0.00 2.83
3278 4939 4.439305 TTAACTCGTACATAGGCGTTGT 57.561 40.909 0.00 1.19 0.00 3.32
3279 4940 4.259690 GCTTTAACTCGTACATAGGCGTTG 60.260 45.833 0.00 0.00 0.00 4.10
3280 4941 3.861689 GCTTTAACTCGTACATAGGCGTT 59.138 43.478 0.00 0.00 0.00 4.84
3281 4942 3.119388 TGCTTTAACTCGTACATAGGCGT 60.119 43.478 0.00 0.00 0.00 5.68
3282 4943 3.441163 TGCTTTAACTCGTACATAGGCG 58.559 45.455 0.00 0.00 0.00 5.52
3283 4944 6.362820 GTCTATGCTTTAACTCGTACATAGGC 59.637 42.308 0.00 0.00 38.21 3.93
3284 4945 7.591795 CAGTCTATGCTTTAACTCGTACATAGG 59.408 40.741 0.00 0.00 38.21 2.57
3285 4946 7.591795 CCAGTCTATGCTTTAACTCGTACATAG 59.408 40.741 0.00 0.00 38.74 2.23
3286 4947 7.067859 ACCAGTCTATGCTTTAACTCGTACATA 59.932 37.037 0.00 0.00 0.00 2.29
3287 4948 6.127423 ACCAGTCTATGCTTTAACTCGTACAT 60.127 38.462 0.00 0.00 0.00 2.29
3288 4949 5.184479 ACCAGTCTATGCTTTAACTCGTACA 59.816 40.000 0.00 0.00 0.00 2.90
3289 4950 5.648572 ACCAGTCTATGCTTTAACTCGTAC 58.351 41.667 0.00 0.00 0.00 3.67
3290 4951 5.163581 GGACCAGTCTATGCTTTAACTCGTA 60.164 44.000 0.00 0.00 0.00 3.43
3291 4952 4.381718 GGACCAGTCTATGCTTTAACTCGT 60.382 45.833 0.00 0.00 0.00 4.18
3292 4953 4.113354 GGACCAGTCTATGCTTTAACTCG 58.887 47.826 0.00 0.00 0.00 4.18
3293 4954 4.113354 CGGACCAGTCTATGCTTTAACTC 58.887 47.826 0.00 0.00 0.00 3.01
3294 4955 3.679083 GCGGACCAGTCTATGCTTTAACT 60.679 47.826 0.00 0.00 0.00 2.24
3295 4956 2.608090 GCGGACCAGTCTATGCTTTAAC 59.392 50.000 0.00 0.00 0.00 2.01
3296 4957 2.419574 GGCGGACCAGTCTATGCTTTAA 60.420 50.000 0.00 0.00 35.26 1.52
3297 4958 1.138266 GGCGGACCAGTCTATGCTTTA 59.862 52.381 0.00 0.00 35.26 1.85
3298 4959 0.107654 GGCGGACCAGTCTATGCTTT 60.108 55.000 0.00 0.00 35.26 3.51
3299 4960 1.522569 GGCGGACCAGTCTATGCTT 59.477 57.895 0.00 0.00 35.26 3.91
3300 4961 2.435693 GGGCGGACCAGTCTATGCT 61.436 63.158 0.00 0.00 39.85 3.79
3301 4962 2.109181 GGGCGGACCAGTCTATGC 59.891 66.667 0.00 0.39 39.85 3.14
3302 4963 3.628989 TGGGCGGACCAGTCTATG 58.371 61.111 0.00 0.00 46.80 2.23
3310 4971 0.822121 ACAAAAAGTCTGGGCGGACC 60.822 55.000 0.00 0.00 36.95 4.46
3311 4972 1.029681 AACAAAAAGTCTGGGCGGAC 58.970 50.000 0.00 0.00 36.56 4.79
3312 4973 1.028905 CAACAAAAAGTCTGGGCGGA 58.971 50.000 0.00 0.00 0.00 5.54
3313 4974 0.744281 ACAACAAAAAGTCTGGGCGG 59.256 50.000 0.00 0.00 0.00 6.13
3314 4975 2.604614 GCTACAACAAAAAGTCTGGGCG 60.605 50.000 0.00 0.00 0.00 6.13
3315 4976 2.623416 AGCTACAACAAAAAGTCTGGGC 59.377 45.455 0.00 0.00 0.00 5.36
3316 4977 4.023707 CAGAGCTACAACAAAAAGTCTGGG 60.024 45.833 0.00 0.00 0.00 4.45
3317 4978 4.555511 GCAGAGCTACAACAAAAAGTCTGG 60.556 45.833 0.00 0.00 32.51 3.86
3318 4979 4.531332 GCAGAGCTACAACAAAAAGTCTG 58.469 43.478 0.00 0.00 34.55 3.51
3319 4980 3.565902 GGCAGAGCTACAACAAAAAGTCT 59.434 43.478 0.00 0.00 0.00 3.24
3320 4981 3.607078 CGGCAGAGCTACAACAAAAAGTC 60.607 47.826 0.00 0.00 0.00 3.01
3321 4982 2.290641 CGGCAGAGCTACAACAAAAAGT 59.709 45.455 0.00 0.00 0.00 2.66
3322 4983 2.918131 GCGGCAGAGCTACAACAAAAAG 60.918 50.000 0.00 0.00 0.00 2.27
3323 4984 1.001815 GCGGCAGAGCTACAACAAAAA 60.002 47.619 0.00 0.00 0.00 1.94
3324 4985 0.591170 GCGGCAGAGCTACAACAAAA 59.409 50.000 0.00 0.00 0.00 2.44
3325 4986 2.244000 GCGGCAGAGCTACAACAAA 58.756 52.632 0.00 0.00 0.00 2.83
3326 4987 3.966215 GCGGCAGAGCTACAACAA 58.034 55.556 0.00 0.00 0.00 2.83
3335 4996 4.880537 CTACCGGCAGCGGCAGAG 62.881 72.222 11.88 3.63 43.71 3.35
3345 5006 1.134788 ACAACTAGATGTGCTACCGGC 60.135 52.381 4.64 0.00 42.22 6.13
3346 5007 2.961526 ACAACTAGATGTGCTACCGG 57.038 50.000 4.64 0.00 30.82 5.28
3347 5008 4.352039 CAGTACAACTAGATGTGCTACCG 58.648 47.826 20.38 7.76 43.19 4.02
3348 5009 4.113354 GCAGTACAACTAGATGTGCTACC 58.887 47.826 20.38 12.38 43.19 3.18
3349 5010 5.000012 AGCAGTACAACTAGATGTGCTAC 58.000 43.478 20.38 16.01 43.19 3.58
3350 5011 4.201920 CGAGCAGTACAACTAGATGTGCTA 60.202 45.833 20.38 0.00 43.19 3.49
3351 5012 3.428180 CGAGCAGTACAACTAGATGTGCT 60.428 47.826 16.27 16.27 45.47 4.40
3352 5013 2.854777 CGAGCAGTACAACTAGATGTGC 59.145 50.000 15.35 13.81 36.33 4.57
3353 5014 4.098055 ACGAGCAGTACAACTAGATGTG 57.902 45.455 15.35 3.88 34.75 3.21
3354 5015 5.646793 TCTTACGAGCAGTACAACTAGATGT 59.353 40.000 10.74 10.74 34.56 3.06
3363 5024 3.994204 TGTTGTCTTACGAGCAGTACA 57.006 42.857 0.00 0.00 34.56 2.90
3366 5027 3.454371 AGTTGTTGTCTTACGAGCAGT 57.546 42.857 0.00 0.00 0.00 4.40
3368 5029 4.046462 GTGTAGTTGTTGTCTTACGAGCA 58.954 43.478 0.00 0.00 0.00 4.26
3372 5033 3.423206 GTCGGTGTAGTTGTTGTCTTACG 59.577 47.826 0.00 0.00 0.00 3.18
3377 5038 1.783140 GACGTCGGTGTAGTTGTTGTC 59.217 52.381 0.00 0.00 0.00 3.18
3380 5041 1.952296 AGAGACGTCGGTGTAGTTGTT 59.048 47.619 10.46 0.00 0.00 2.83
3414 5075 5.411781 GGTGTGTCTAGAATTCAGTCGATT 58.588 41.667 8.44 0.00 0.00 3.34
3415 5076 4.142138 GGGTGTGTCTAGAATTCAGTCGAT 60.142 45.833 8.44 0.00 0.00 3.59
3422 5083 5.348997 CGAAAGAAGGGTGTGTCTAGAATTC 59.651 44.000 0.00 0.00 0.00 2.17
3424 5085 4.527038 TCGAAAGAAGGGTGTGTCTAGAAT 59.473 41.667 0.00 0.00 37.03 2.40
3427 5088 3.936372 TCGAAAGAAGGGTGTGTCTAG 57.064 47.619 0.00 0.00 37.03 2.43
3441 5102 8.069949 GCATGCACAATGTCTTTCATCGAAAG 62.070 42.308 14.21 9.68 41.83 2.62
3446 5107 3.840468 TGCATGCACAATGTCTTTCATC 58.160 40.909 18.46 0.00 38.65 2.92
3448 5109 3.945981 ATGCATGCACAATGTCTTTCA 57.054 38.095 25.37 0.00 38.65 2.69
3490 5151 9.591792 CATCATGACTAATCAGTTTCTGAGTAA 57.408 33.333 0.00 0.00 44.08 2.24
3491 5152 8.753133 ACATCATGACTAATCAGTTTCTGAGTA 58.247 33.333 0.00 6.25 44.08 2.59
3492 5153 7.619050 ACATCATGACTAATCAGTTTCTGAGT 58.381 34.615 0.00 5.43 44.08 3.41
3493 5154 7.224362 GGACATCATGACTAATCAGTTTCTGAG 59.776 40.741 0.00 0.00 44.08 3.35
3494 5155 7.044181 GGACATCATGACTAATCAGTTTCTGA 58.956 38.462 0.00 1.92 44.99 3.27
3495 5156 7.046652 AGGACATCATGACTAATCAGTTTCTG 58.953 38.462 0.00 0.00 38.57 3.02
3496 5157 7.125507 AGAGGACATCATGACTAATCAGTTTCT 59.874 37.037 0.00 0.00 38.57 2.52
3497 5158 7.271511 AGAGGACATCATGACTAATCAGTTTC 58.728 38.462 0.00 0.00 38.57 2.78
3572 5233 9.836076 CTATCATCGAGACAAAATATACCGTAA 57.164 33.333 0.00 0.00 0.00 3.18
3575 5236 9.574458 AATCTATCATCGAGACAAAATATACCG 57.426 33.333 0.00 0.00 0.00 4.02
3585 5246 5.305386 ACCATCCAAATCTATCATCGAGACA 59.695 40.000 0.00 0.00 0.00 3.41
3590 5251 5.049198 CCACAACCATCCAAATCTATCATCG 60.049 44.000 0.00 0.00 0.00 3.84
3596 5257 4.649267 TGTCCACAACCATCCAAATCTA 57.351 40.909 0.00 0.00 0.00 1.98
3598 5259 3.763360 TGATGTCCACAACCATCCAAATC 59.237 43.478 0.00 0.00 37.30 2.17
3609 5270 6.298441 TCAGATAGTTGATGATGTCCACAA 57.702 37.500 0.00 0.00 0.00 3.33
3612 5273 8.146412 CACTAATCAGATAGTTGATGATGTCCA 58.854 37.037 0.00 0.00 37.83 4.02
3621 5282 7.661968 GTGGCTATCACTAATCAGATAGTTGA 58.338 38.462 10.18 0.00 43.49 3.18
3622 5283 7.881643 GTGGCTATCACTAATCAGATAGTTG 57.118 40.000 10.18 0.00 43.49 3.16
3681 5342 6.124088 ACCGCTCAAATTTATCATCTGAAC 57.876 37.500 0.00 0.00 0.00 3.18
3684 5345 5.740569 CACAACCGCTCAAATTTATCATCTG 59.259 40.000 0.00 0.00 0.00 2.90
3685 5346 5.163622 CCACAACCGCTCAAATTTATCATCT 60.164 40.000 0.00 0.00 0.00 2.90
3706 5382 2.615493 CCTGGTAGTTGGTGATGTCCAC 60.615 54.545 0.00 0.00 44.95 4.02
3749 5425 9.535878 TCATCCATTAGTTTTTACAAACCAAAC 57.464 29.630 0.87 0.00 43.08 2.93
3767 5443 5.868454 TGACCGTGAATATCATCATCCATT 58.132 37.500 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.