Multiple sequence alignment - TraesCS5A01G172000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G172000 chr5A 100.000 2893 0 0 1 2893 365135940 365133048 0.000000e+00 5343.0
1 TraesCS5A01G172000 chr5A 77.581 339 50 19 80 406 631779311 631779635 6.370000e-42 182.0
2 TraesCS5A01G172000 chr5A 91.489 47 2 2 469 515 631780761 631780805 2.410000e-06 63.9
3 TraesCS5A01G172000 chr2A 93.629 2276 112 12 551 2795 187816360 187818633 0.000000e+00 3369.0
4 TraesCS5A01G172000 chr2A 83.883 515 53 20 59 550 187725356 187725863 5.650000e-127 464.0
5 TraesCS5A01G172000 chr2A 86.772 189 20 4 335 518 187726899 187727087 3.780000e-49 206.0
6 TraesCS5A01G172000 chr4B 93.364 1974 99 11 2 1953 228457880 228455917 0.000000e+00 2891.0
7 TraesCS5A01G172000 chr4B 90.382 1518 130 14 551 2062 243643152 243644659 0.000000e+00 1980.0
8 TraesCS5A01G172000 chr4B 88.889 135 13 2 50 182 40653817 40653683 6.410000e-37 165.0
9 TraesCS5A01G172000 chr4B 82.645 121 20 1 2025 2145 532628721 532628840 3.940000e-19 106.0
10 TraesCS5A01G172000 chr5D 94.248 1756 85 7 551 2296 80811946 80813695 0.000000e+00 2669.0
11 TraesCS5A01G172000 chr5D 82.403 591 43 17 1 553 80739327 80739894 2.630000e-125 459.0
12 TraesCS5A01G172000 chr5D 88.462 234 20 6 59 285 80740266 80740499 2.840000e-70 276.0
13 TraesCS5A01G172000 chr5D 85.348 273 18 6 297 550 80740288 80740557 2.210000e-66 263.0
14 TraesCS5A01G172000 chr5D 83.019 265 29 8 297 550 80739960 80740219 2.900000e-55 226.0
15 TraesCS5A01G172000 chr6B 95.093 1610 73 5 551 2159 246527519 246525915 0.000000e+00 2531.0
16 TraesCS5A01G172000 chr6B 94.845 1610 78 4 551 2159 246377268 246375663 0.000000e+00 2508.0
17 TraesCS5A01G172000 chr6B 91.918 730 38 11 2176 2886 246375573 246374846 0.000000e+00 1002.0
18 TraesCS5A01G172000 chr6B 91.918 730 38 11 2176 2886 246525825 246525098 0.000000e+00 1002.0
19 TraesCS5A01G172000 chr6B 91.837 735 35 15 2172 2886 246799966 246799237 0.000000e+00 1002.0
20 TraesCS5A01G172000 chr6B 91.644 730 40 11 2176 2886 246681699 246680972 0.000000e+00 990.0
21 TraesCS5A01G172000 chr6B 86.062 452 27 13 85 500 247084629 247084178 1.220000e-123 453.0
22 TraesCS5A01G172000 chr6B 82.778 540 36 23 1 504 247085422 247084904 2.060000e-116 429.0
23 TraesCS5A01G172000 chr6B 85.818 275 18 6 297 553 246969124 246968853 3.670000e-69 272.0
24 TraesCS5A01G172000 chr6B 89.401 217 15 5 342 553 246968463 246968250 1.710000e-67 267.0
25 TraesCS5A01G172000 chr6B 85.946 185 22 3 337 517 246968087 246967903 8.180000e-46 195.0
26 TraesCS5A01G172000 chrUn 94.969 1610 76 4 551 2159 155275657 155274052 0.000000e+00 2519.0
27 TraesCS5A01G172000 chrUn 95.184 1495 66 5 666 2159 324095446 324093957 0.000000e+00 2357.0
28 TraesCS5A01G172000 chrUn 94.983 1495 70 4 666 2159 351594615 351596105 0.000000e+00 2340.0
29 TraesCS5A01G172000 chrUn 92.055 730 37 11 2176 2886 155273962 155273235 0.000000e+00 1007.0
30 TraesCS5A01G172000 chrUn 91.918 730 38 11 2176 2886 324093867 324093140 0.000000e+00 1002.0
31 TraesCS5A01G172000 chrUn 90.609 575 33 11 2176 2731 351596195 351596767 0.000000e+00 743.0
32 TraesCS5A01G172000 chrUn 91.238 525 25 11 2381 2886 428068499 428069021 0.000000e+00 695.0
33 TraesCS5A01G172000 chr6D 90.241 1619 109 27 1308 2882 111428936 111430549 0.000000e+00 2069.0
34 TraesCS5A01G172000 chr6D 89.655 290 20 8 1 285 119507520 119507236 7.620000e-96 361.0
35 TraesCS5A01G172000 chr6D 88.152 211 20 4 298 504 111402137 111402346 2.230000e-61 246.0
36 TraesCS5A01G172000 chr6D 91.489 141 11 1 297 437 111401357 111401496 2.940000e-45 193.0
37 TraesCS5A01G172000 chr6D 82.743 226 21 4 297 504 111401050 111401275 4.920000e-43 185.0
38 TraesCS5A01G172000 chr6D 82.775 209 17 7 297 490 119507440 119507236 4.960000e-38 169.0
39 TraesCS5A01G172000 chr6D 84.756 164 16 6 391 550 111401908 111402066 3.860000e-34 156.0
40 TraesCS5A01G172000 chr6D 81.407 199 22 6 356 553 111400800 111400984 6.460000e-32 148.0
41 TraesCS5A01G172000 chr6D 86.400 125 14 2 391 513 119507727 119507604 1.810000e-27 134.0
42 TraesCS5A01G172000 chr6D 87.255 102 12 1 297 398 119507181 119507081 6.550000e-22 115.0
43 TraesCS5A01G172000 chr6D 86.364 88 9 3 297 383 119507111 119507026 3.070000e-15 93.5
44 TraesCS5A01G172000 chr1B 88.332 1157 88 29 1769 2882 87975493 87974341 0.000000e+00 1345.0
45 TraesCS5A01G172000 chr2B 87.993 1166 90 21 1764 2882 654506792 654505630 0.000000e+00 1332.0
46 TraesCS5A01G172000 chr2B 88.889 135 13 2 50 182 440363836 440363702 6.410000e-37 165.0
47 TraesCS5A01G172000 chr3D 89.619 289 22 6 1 285 123292098 123292382 7.620000e-96 361.0
48 TraesCS5A01G172000 chr3D 83.186 226 19 7 294 504 123292175 123292396 3.810000e-44 189.0
49 TraesCS5A01G172000 chr3D 89.796 147 12 2 391 535 122588282 122588137 4.920000e-43 185.0
50 TraesCS5A01G172000 chr3D 85.714 126 14 3 391 513 123291893 123292017 2.340000e-26 130.0
51 TraesCS5A01G172000 chr3D 85.833 120 13 4 60 176 123292430 123292548 1.090000e-24 124.0
52 TraesCS5A01G172000 chr1A 78.571 322 47 17 80 391 511261347 511261656 2.940000e-45 193.0
53 TraesCS5A01G172000 chr1A 78.328 323 46 17 80 391 81916690 81916999 1.370000e-43 187.0
54 TraesCS5A01G172000 chr1A 76.871 294 44 19 119 391 81915810 81916100 8.350000e-31 145.0
55 TraesCS5A01G172000 chr1A 84.091 132 15 5 315 444 522891302 522891429 3.910000e-24 122.0
56 TraesCS5A01G172000 chr1A 88.542 96 10 1 297 391 511261348 511261443 6.550000e-22 115.0
57 TraesCS5A01G172000 chr1A 83.333 78 8 3 474 550 511262789 511262862 1.860000e-07 67.6
58 TraesCS5A01G172000 chr1A 91.489 47 2 2 469 515 511263155 511263199 2.410000e-06 63.9
59 TraesCS5A01G172000 chr1A 92.857 42 2 1 469 510 81918186 81918226 3.110000e-05 60.2
60 TraesCS5A01G172000 chr1A 89.362 47 3 2 469 515 81916246 81916290 1.120000e-04 58.4
61 TraesCS5A01G172000 chr1A 89.362 47 3 2 469 515 511260902 511260946 1.120000e-04 58.4
62 TraesCS5A01G172000 chr1A 89.362 47 3 2 469 515 511264507 511264551 1.120000e-04 58.4
63 TraesCS5A01G172000 chr3A 86.567 134 14 4 80 210 517800469 517800337 8.350000e-31 145.0
64 TraesCS5A01G172000 chr6A 86.364 132 13 4 315 444 189420682 189420554 3.890000e-29 139.0
65 TraesCS5A01G172000 chr6A 84.962 133 14 5 315 444 130954944 130954815 2.340000e-26 130.0
66 TraesCS5A01G172000 chr4A 83.439 157 17 7 80 232 177587954 177587803 1.400000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G172000 chr5A 365133048 365135940 2892 True 5343.000000 5343 100.0000 1 2893 1 chr5A.!!$R1 2892
1 TraesCS5A01G172000 chr2A 187816360 187818633 2273 False 3369.000000 3369 93.6290 551 2795 1 chr2A.!!$F1 2244
2 TraesCS5A01G172000 chr2A 187725356 187727087 1731 False 335.000000 464 85.3275 59 550 2 chr2A.!!$F2 491
3 TraesCS5A01G172000 chr4B 228455917 228457880 1963 True 2891.000000 2891 93.3640 2 1953 1 chr4B.!!$R2 1951
4 TraesCS5A01G172000 chr4B 243643152 243644659 1507 False 1980.000000 1980 90.3820 551 2062 1 chr4B.!!$F1 1511
5 TraesCS5A01G172000 chr5D 80811946 80813695 1749 False 2669.000000 2669 94.2480 551 2296 1 chr5D.!!$F1 1745
6 TraesCS5A01G172000 chr5D 80739327 80740557 1230 False 306.000000 459 84.8080 1 553 4 chr5D.!!$F2 552
7 TraesCS5A01G172000 chr6B 246525098 246527519 2421 True 1766.500000 2531 93.5055 551 2886 2 chr6B.!!$R4 2335
8 TraesCS5A01G172000 chr6B 246374846 246377268 2422 True 1755.000000 2508 93.3815 551 2886 2 chr6B.!!$R3 2335
9 TraesCS5A01G172000 chr6B 246799237 246799966 729 True 1002.000000 1002 91.8370 2172 2886 1 chr6B.!!$R2 714
10 TraesCS5A01G172000 chr6B 246680972 246681699 727 True 990.000000 990 91.6440 2176 2886 1 chr6B.!!$R1 710
11 TraesCS5A01G172000 chr6B 247084178 247085422 1244 True 441.000000 453 84.4200 1 504 2 chr6B.!!$R6 503
12 TraesCS5A01G172000 chr6B 246967903 246969124 1221 True 244.666667 272 87.0550 297 553 3 chr6B.!!$R5 256
13 TraesCS5A01G172000 chrUn 155273235 155275657 2422 True 1763.000000 2519 93.5120 551 2886 2 chrUn.!!$R1 2335
14 TraesCS5A01G172000 chrUn 324093140 324095446 2306 True 1679.500000 2357 93.5510 666 2886 2 chrUn.!!$R2 2220
15 TraesCS5A01G172000 chrUn 351594615 351596767 2152 False 1541.500000 2340 92.7960 666 2731 2 chrUn.!!$F2 2065
16 TraesCS5A01G172000 chrUn 428068499 428069021 522 False 695.000000 695 91.2380 2381 2886 1 chrUn.!!$F1 505
17 TraesCS5A01G172000 chr6D 111428936 111430549 1613 False 2069.000000 2069 90.2410 1308 2882 1 chr6D.!!$F1 1574
18 TraesCS5A01G172000 chr1B 87974341 87975493 1152 True 1345.000000 1345 88.3320 1769 2882 1 chr1B.!!$R1 1113
19 TraesCS5A01G172000 chr2B 654505630 654506792 1162 True 1332.000000 1332 87.9930 1764 2882 1 chr2B.!!$R2 1118
20 TraesCS5A01G172000 chr3D 123291893 123292548 655 False 201.000000 361 86.0880 1 513 4 chr3D.!!$F1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 151 2.657459 TGTTCCCCCAATAATGTTCCCT 59.343 45.455 0.0 0.0 0.0 4.20 F
138 152 3.859248 TGTTCCCCCAATAATGTTCCCTA 59.141 43.478 0.0 0.0 0.0 3.53 F
1532 2476 2.176798 TCCCAAGGTCAATTTCAGGTGT 59.823 45.455 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1289 1997 1.029681 CGGGCATTTTTACCTAGGGC 58.970 55.000 14.81 4.45 0.00 5.19 R
1571 2515 1.134431 CCAAAAAGTTGCTGGTGGCTT 60.134 47.619 0.00 0.00 42.39 4.35 R
2480 4116 2.031930 TCGGTTGCTCGTTTACAAAACC 59.968 45.455 0.00 0.00 34.92 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 149 5.491323 TTTTGTTCCCCCAATAATGTTCC 57.509 39.130 0.00 0.00 0.00 3.62
136 150 3.108847 TGTTCCCCCAATAATGTTCCC 57.891 47.619 0.00 0.00 0.00 3.97
137 151 2.657459 TGTTCCCCCAATAATGTTCCCT 59.343 45.455 0.00 0.00 0.00 4.20
138 152 3.859248 TGTTCCCCCAATAATGTTCCCTA 59.141 43.478 0.00 0.00 0.00 3.53
139 153 4.295238 TGTTCCCCCAATAATGTTCCCTAA 59.705 41.667 0.00 0.00 0.00 2.69
140 154 5.222568 TGTTCCCCCAATAATGTTCCCTAAA 60.223 40.000 0.00 0.00 0.00 1.85
141 155 5.759773 TCCCCCAATAATGTTCCCTAAAT 57.240 39.130 0.00 0.00 0.00 1.40
178 192 5.722021 AGTGTTGTCCAAATAATGTTCCC 57.278 39.130 0.00 0.00 0.00 3.97
179 193 5.393866 AGTGTTGTCCAAATAATGTTCCCT 58.606 37.500 0.00 0.00 0.00 4.20
180 194 5.476945 AGTGTTGTCCAAATAATGTTCCCTC 59.523 40.000 0.00 0.00 0.00 4.30
554 1216 7.425915 TTGTAAACATTTTTCTTCAACGACG 57.574 32.000 0.00 0.00 0.00 5.12
570 1232 6.097356 TCAACGACGCTAGTAATTCAAGAAT 58.903 36.000 0.00 0.00 0.00 2.40
1532 2476 2.176798 TCCCAAGGTCAATTTCAGGTGT 59.823 45.455 0.00 0.00 0.00 4.16
1542 2486 6.239176 GGTCAATTTCAGGTGTGTTTTCCATA 60.239 38.462 0.00 0.00 0.00 2.74
1571 2515 6.843752 TCTCCCCTTTTACAAGATTTGTACA 58.156 36.000 0.00 0.00 45.16 2.90
1608 2552 9.653287 AACTTTTTGGTTCTTTCTCCTAAAAAG 57.347 29.630 14.55 14.55 41.15 2.27
1680 2626 8.984891 TGGAACTGATTGTGCTATTATTTTTG 57.015 30.769 0.00 0.00 0.00 2.44
1716 2662 7.880160 TGACTCAAGAATTTTCCTTCTTCAA 57.120 32.000 0.00 0.00 42.21 2.69
2069 3017 5.623956 ATCCCGTATATGTTTCAACAGGA 57.376 39.130 0.00 0.00 43.04 3.86
2128 3076 6.394809 TCTTTACTCGTTCTGCATATGACAA 58.605 36.000 6.97 0.00 0.00 3.18
2159 3107 5.538067 GGTAACTTCTGAAATCAGCAGTC 57.462 43.478 14.56 5.16 46.82 3.51
2160 3108 5.241662 GGTAACTTCTGAAATCAGCAGTCT 58.758 41.667 14.56 8.77 46.82 3.24
2161 3109 5.121454 GGTAACTTCTGAAATCAGCAGTCTG 59.879 44.000 14.56 0.00 46.82 3.51
2163 3111 5.474578 ACTTCTGAAATCAGCAGTCTGTA 57.525 39.130 9.48 0.00 44.95 2.74
2165 3113 7.175347 ACTTCTGAAATCAGCAGTCTGTATA 57.825 36.000 9.48 0.00 44.95 1.47
2166 3114 7.790027 ACTTCTGAAATCAGCAGTCTGTATAT 58.210 34.615 9.48 0.00 44.95 0.86
2168 3116 5.987953 TCTGAAATCAGCAGTCTGTATATGC 59.012 40.000 5.53 0.00 43.46 3.14
2253 3274 9.005777 CAAAAGAATCCCAATGATGAAATGTTT 57.994 29.630 0.00 0.00 32.68 2.83
2452 4088 3.769739 TCTTTGCAAGACCTTCAGCTA 57.230 42.857 0.00 0.00 31.20 3.32
2480 4116 1.666700 TGTCCGGAAACAGTTGAAACG 59.333 47.619 5.23 0.00 0.00 3.60
2555 4245 0.609131 CAAGGGTCCCAACGCAAGAT 60.609 55.000 11.55 0.00 40.65 2.40
2598 4291 5.990668 ACAGTACCATGAGGAAACTAATCC 58.009 41.667 0.00 0.00 44.43 3.01
2600 4307 4.715297 AGTACCATGAGGAAACTAATCCGT 59.285 41.667 0.00 0.00 44.60 4.69
2887 5067 5.176590 CAGAGAGAAACAACAGAAGCAGTAC 59.823 44.000 0.00 0.00 0.00 2.73
2888 5068 5.023533 AGAGAAACAACAGAAGCAGTACA 57.976 39.130 0.00 0.00 0.00 2.90
2889 5069 5.615289 AGAGAAACAACAGAAGCAGTACAT 58.385 37.500 0.00 0.00 0.00 2.29
2890 5070 5.698545 AGAGAAACAACAGAAGCAGTACATC 59.301 40.000 0.00 0.00 0.00 3.06
2892 5072 5.237344 AGAAACAACAGAAGCAGTACATCAC 59.763 40.000 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 72 8.893563 AAAGGAACATTAATCAGGGAACATTA 57.106 30.769 0.00 0.00 0.00 1.90
157 171 5.242838 TGAGGGAACATTATTTGGACAACAC 59.757 40.000 0.00 0.00 0.00 3.32
178 192 4.576053 TCCTCGGCATCAACAAATATTGAG 59.424 41.667 0.00 0.00 41.76 3.02
179 193 4.522114 TCCTCGGCATCAACAAATATTGA 58.478 39.130 0.00 0.00 42.62 2.57
180 194 4.898829 TCCTCGGCATCAACAAATATTG 57.101 40.909 0.00 0.00 0.00 1.90
330 438 5.045213 GGGAACATTATTGGGGGAACAAAAT 60.045 40.000 0.00 0.00 33.48 1.82
378 569 4.202243 CGGCATCAACAATTATTTGGGGAT 60.202 41.667 2.66 2.38 37.15 3.85
473 945 6.265649 TGTTCCCTCAATAATGTTCCGAAAAA 59.734 34.615 0.00 0.00 0.00 1.94
478 950 5.835113 AATGTTCCCTCAATAATGTTCCG 57.165 39.130 0.00 0.00 0.00 4.30
479 951 8.912988 TGAATAATGTTCCCTCAATAATGTTCC 58.087 33.333 0.00 0.00 0.00 3.62
531 1193 5.452944 GCGTCGTTGAAGAAAAATGTTTACA 59.547 36.000 0.00 0.00 0.00 2.41
546 1208 5.050644 TCTTGAATTACTAGCGTCGTTGA 57.949 39.130 0.00 0.00 0.00 3.18
554 1216 7.484140 CCTTTTGGGATTCTTGAATTACTAGC 58.516 38.462 0.00 0.00 37.23 3.42
570 1232 0.480690 TGCTTACCAGCCTTTTGGGA 59.519 50.000 0.00 0.00 46.74 4.37
764 1427 9.971922 AAGAACATCATGGAGAAAAGTAAAAAG 57.028 29.630 0.00 0.00 0.00 2.27
778 1442 3.284617 TCATGGCAGAAGAACATCATGG 58.715 45.455 0.00 0.00 34.50 3.66
1069 1734 9.527157 TTGTTTCCCAGAAAATGATTGATAGTA 57.473 29.630 0.00 0.00 0.00 1.82
1289 1997 1.029681 CGGGCATTTTTACCTAGGGC 58.970 55.000 14.81 4.45 0.00 5.19
1418 2349 7.636326 ACAAAACCTTGAAGTTGTAGATAACG 58.364 34.615 0.00 0.00 36.33 3.18
1532 2476 4.175962 AGGGGAGAGTTCTATGGAAAACA 58.824 43.478 0.00 0.00 32.81 2.83
1542 2486 6.455690 AATCTTGTAAAAGGGGAGAGTTCT 57.544 37.500 0.00 0.00 0.00 3.01
1571 2515 1.134431 CCAAAAAGTTGCTGGTGGCTT 60.134 47.619 0.00 0.00 42.39 4.35
1680 2626 9.736023 AAAATTCTTGAGTCATACTTGTGAAAC 57.264 29.630 0.00 0.00 37.35 2.78
1716 2662 6.757010 CGAGACCTTTGTACTTGCTAACATAT 59.243 38.462 0.00 0.00 0.00 1.78
1906 2852 2.084546 ACTAACGGCAGCTGAATTTCC 58.915 47.619 20.43 7.65 0.00 3.13
2069 3017 7.472334 AAGCTTCACTTGAATATGTGGAAAT 57.528 32.000 0.00 0.00 37.17 2.17
2128 3076 7.918076 TGATTTCAGAAGTTACCTGAGGTTAT 58.082 34.615 10.53 0.00 41.16 1.89
2161 3109 9.979578 CCTTGAGAATAGATATGGAGCATATAC 57.020 37.037 0.00 0.00 37.20 1.47
2163 3111 7.626890 ACCCTTGAGAATAGATATGGAGCATAT 59.373 37.037 0.00 0.00 39.43 1.78
2165 3113 5.789575 ACCCTTGAGAATAGATATGGAGCAT 59.210 40.000 0.00 0.00 0.00 3.79
2166 3114 5.158141 ACCCTTGAGAATAGATATGGAGCA 58.842 41.667 0.00 0.00 0.00 4.26
2168 3116 6.723515 TGAGACCCTTGAGAATAGATATGGAG 59.276 42.308 0.00 0.00 0.00 3.86
2170 3118 6.924913 TGAGACCCTTGAGAATAGATATGG 57.075 41.667 0.00 0.00 0.00 2.74
2174 3122 9.391227 AGAATAATGAGACCCTTGAGAATAGAT 57.609 33.333 0.00 0.00 0.00 1.98
2253 3274 6.656632 TGTTAATTGGAAATACAGGTGCAA 57.343 33.333 0.00 0.00 0.00 4.08
2301 3657 7.493971 CCTTGAAGGTGACAGTATTAATGAGAG 59.506 40.741 2.25 0.00 0.00 3.20
2408 4044 3.957497 ACTATCACTAGACCAGCAAGAGG 59.043 47.826 0.00 0.00 0.00 3.69
2452 4088 5.533154 TCAACTGTTTCCGGACATTGTTTAT 59.467 36.000 1.83 0.00 0.00 1.40
2480 4116 2.031930 TCGGTTGCTCGTTTACAAAACC 59.968 45.455 0.00 0.00 34.92 3.27
2724 4458 6.909550 AGAAAGTATCAGTATAGGAGCAGG 57.090 41.667 0.00 0.00 0.00 4.85
2741 4475 5.510430 AGAGTTCCAAAAGTCCAAGAAAGT 58.490 37.500 0.00 0.00 35.74 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.