Multiple sequence alignment - TraesCS5A01G171800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G171800 chr5A 100.000 2652 0 0 1 2652 364979722 364977071 0.000000e+00 4898.0
1 TraesCS5A01G171800 chr5A 84.855 482 53 14 718 1180 364970881 364970401 4.000000e-128 468.0
2 TraesCS5A01G171800 chr5A 83.426 537 36 29 1387 1907 364970165 364969666 1.450000e-122 449.0
3 TraesCS5A01G171800 chr5A 94.375 160 9 0 1179 1338 364970310 364970151 2.040000e-61 246.0
4 TraesCS5A01G171800 chr5A 88.406 207 18 2 1179 1379 364961901 364961695 7.330000e-61 244.0
5 TraesCS5A01G171800 chr5A 84.028 144 17 3 1508 1651 364961650 364961513 1.660000e-27 134.0
6 TraesCS5A01G171800 chr5A 85.345 116 15 1 1062 1175 364962117 364962002 4.640000e-23 119.0
7 TraesCS5A01G171800 chr5A 94.118 68 1 2 2037 2102 510537857 510537923 1.680000e-17 100.0
8 TraesCS5A01G171800 chr5D 89.163 1947 111 45 1 1905 276554865 276552977 0.000000e+00 2335.0
9 TraesCS5A01G171800 chr5D 86.591 619 49 18 1349 1954 276546606 276546009 0.000000e+00 652.0
10 TraesCS5A01G171800 chr5D 90.254 236 18 4 946 1180 276547063 276546832 1.190000e-78 303.0
11 TraesCS5A01G171800 chr5D 89.744 234 23 1 718 951 276547319 276547087 5.550000e-77 298.0
12 TraesCS5A01G171800 chr5D 92.118 203 13 2 1179 1378 276546731 276546529 1.550000e-72 283.0
13 TraesCS5A01G171800 chr5D 87.562 201 22 1 1179 1379 276467824 276467627 2.050000e-56 230.0
14 TraesCS5A01G171800 chr5D 86.111 72 5 2 404 470 256744022 256743951 3.660000e-09 73.1
15 TraesCS5A01G171800 chr5D 88.136 59 4 2 414 471 549872697 549872753 1.700000e-07 67.6
16 TraesCS5A01G171800 chr5B 89.220 974 57 26 496 1426 313350895 313349927 0.000000e+00 1173.0
17 TraesCS5A01G171800 chr5B 91.559 699 40 8 1315 1994 313349990 313349292 0.000000e+00 946.0
18 TraesCS5A01G171800 chr5B 87.544 562 32 14 1349 1902 313311232 313310701 1.350000e-172 616.0
19 TraesCS5A01G171800 chr5B 87.731 432 34 9 1 431 313351596 313351183 1.100000e-133 486.0
20 TraesCS5A01G171800 chr5B 87.500 312 39 0 2341 2652 313349142 313348831 6.980000e-96 361.0
21 TraesCS5A01G171800 chr5B 91.102 236 17 3 946 1180 313311685 313311453 1.530000e-82 316.0
22 TraesCS5A01G171800 chr5B 93.103 203 11 2 1179 1378 313311357 313311155 7.180000e-76 294.0
23 TraesCS5A01G171800 chr5B 87.917 240 22 5 718 951 313311947 313311709 2.600000e-70 276.0
24 TraesCS5A01G171800 chr5B 80.851 235 29 11 2040 2261 282010739 282010508 1.260000e-38 171.0
25 TraesCS5A01G171800 chr5B 96.774 62 2 0 2037 2098 702896592 702896653 1.300000e-18 104.0
26 TraesCS5A01G171800 chr2B 86.911 191 22 2 2079 2266 53455883 53455693 7.440000e-51 211.0
27 TraesCS5A01G171800 chr2B 95.122 41 2 0 430 470 48115176 48115136 6.130000e-07 65.8
28 TraesCS5A01G171800 chr4A 91.667 132 10 1 2130 2261 624832775 624832645 5.830000e-42 182.0
29 TraesCS5A01G171800 chr4A 86.957 115 8 6 2041 2152 503636762 503636872 3.580000e-24 122.0
30 TraesCS5A01G171800 chr4A 89.744 78 5 3 2079 2155 578561740 578561815 2.170000e-16 97.1
31 TraesCS5A01G171800 chr4D 93.750 112 7 0 2150 2261 465203169 465203280 4.540000e-38 169.0
32 TraesCS5A01G171800 chr3D 93.750 112 7 0 2150 2261 9253561 9253672 4.540000e-38 169.0
33 TraesCS5A01G171800 chr3B 94.495 109 6 0 2153 2261 707571324 707571216 4.540000e-38 169.0
34 TraesCS5A01G171800 chr3B 90.909 99 7 1 2059 2155 446450120 446450022 5.960000e-27 132.0
35 TraesCS5A01G171800 chr3B 98.305 59 1 0 2039 2097 727161133 727161191 1.300000e-18 104.0
36 TraesCS5A01G171800 chr1B 92.308 117 8 1 2153 2269 374925423 374925308 5.870000e-37 165.0
37 TraesCS5A01G171800 chr1B 89.744 78 7 1 2079 2155 673633892 673633815 6.040000e-17 99.0
38 TraesCS5A01G171800 chr7A 84.000 175 20 6 2094 2262 553754204 553754376 7.600000e-36 161.0
39 TraesCS5A01G171800 chr1A 88.636 132 14 1 2130 2261 569257529 569257659 2.730000e-35 159.0
40 TraesCS5A01G171800 chr7B 88.983 118 10 2 2041 2155 673282185 673282068 2.750000e-30 143.0
41 TraesCS5A01G171800 chr2A 100.000 58 0 0 2041 2098 760911732 760911675 1.000000e-19 108.0
42 TraesCS5A01G171800 chr2A 89.610 77 7 1 2079 2154 747303666 747303742 2.170000e-16 97.1
43 TraesCS5A01G171800 chr2A 92.000 50 4 0 426 475 125220083 125220132 1.320000e-08 71.3
44 TraesCS5A01G171800 chr2A 88.333 60 4 3 411 470 73546103 73546159 4.740000e-08 69.4
45 TraesCS5A01G171800 chr6D 96.825 63 0 2 2041 2102 430518100 430518161 1.300000e-18 104.0
46 TraesCS5A01G171800 chr6B 94.203 69 0 4 2042 2106 556794573 556794505 4.670000e-18 102.0
47 TraesCS5A01G171800 chr6B 90.566 53 5 0 418 470 186694587 186694535 1.320000e-08 71.3
48 TraesCS5A01G171800 chr6B 84.848 66 9 1 406 470 642350211 642350276 6.130000e-07 65.8
49 TraesCS5A01G171800 chr3A 89.744 78 8 0 2078 2155 571926384 571926307 1.680000e-17 100.0
50 TraesCS5A01G171800 chr6A 94.000 50 3 0 423 472 150232439 150232488 2.830000e-10 76.8
51 TraesCS5A01G171800 chr6A 92.000 50 4 0 426 475 23967365 23967316 1.320000e-08 71.3
52 TraesCS5A01G171800 chr6A 92.105 38 3 0 1993 2030 1682992 1683029 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G171800 chr5A 364977071 364979722 2651 True 4898.000000 4898 100.00000 1 2652 1 chr5A.!!$R1 2651
1 TraesCS5A01G171800 chr5A 364969666 364970881 1215 True 387.666667 468 87.55200 718 1907 3 chr5A.!!$R3 1189
2 TraesCS5A01G171800 chr5D 276552977 276554865 1888 True 2335.000000 2335 89.16300 1 1905 1 chr5D.!!$R3 1904
3 TraesCS5A01G171800 chr5D 276546009 276547319 1310 True 384.000000 652 89.67675 718 1954 4 chr5D.!!$R4 1236
4 TraesCS5A01G171800 chr5B 313348831 313351596 2765 True 741.500000 1173 89.00250 1 2652 4 chr5B.!!$R3 2651
5 TraesCS5A01G171800 chr5B 313310701 313311947 1246 True 375.500000 616 89.91650 718 1902 4 chr5B.!!$R2 1184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
834 1104 0.321122 CTTTGCTGCTTCCCTCGTCT 60.321 55.0 0.0 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1681 2195 0.039617 CTCTCCGACGCATCATCTCC 60.04 60.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.548818 CGAAAGAGCTTCACCCAAACAAG 60.549 47.826 0.00 0.00 33.17 3.16
110 111 5.812642 AGCAGAATATGTAGGTCAACGAAAG 59.187 40.000 0.00 0.00 0.00 2.62
128 129 5.930569 ACGAAAGGACCATGTAAGTAAGAAC 59.069 40.000 0.00 0.00 0.00 3.01
248 249 2.156891 TCTCAAACGTTGCTATTGTCGC 59.843 45.455 0.00 0.00 0.00 5.19
256 257 0.460109 TGCTATTGTCGCGTGCATCT 60.460 50.000 5.77 0.66 0.00 2.90
263 264 0.452784 GTCGCGTGCATCTTTTCACC 60.453 55.000 5.77 0.00 0.00 4.02
273 274 3.119955 GCATCTTTTCACCCCGTAAAGAC 60.120 47.826 0.00 0.00 41.90 3.01
291 292 9.146984 CGTAAAGACAAAGGTATTGATAACTGA 57.853 33.333 0.00 0.00 29.04 3.41
338 341 1.200252 CTTTCTTGAGACGGCGAGAGA 59.800 52.381 16.62 6.13 30.30 3.10
339 342 0.805614 TTCTTGAGACGGCGAGAGAG 59.194 55.000 16.62 4.79 30.30 3.20
403 406 7.162761 TGGTAGTTTCAGGAATTCAATAACGA 58.837 34.615 7.93 0.13 0.00 3.85
425 428 8.736751 ACGACACAAACAAACAAATATATTCC 57.263 30.769 0.00 0.00 0.00 3.01
456 459 9.262358 ACTTCGTCCATAAAGAAATATAAGAGC 57.738 33.333 0.00 0.00 0.00 4.09
457 460 7.869016 TCGTCCATAAAGAAATATAAGAGCG 57.131 36.000 0.00 0.00 0.00 5.03
459 462 7.924412 TCGTCCATAAAGAAATATAAGAGCGTT 59.076 33.333 0.00 0.00 0.00 4.84
460 463 8.548721 CGTCCATAAAGAAATATAAGAGCGTTT 58.451 33.333 0.00 0.00 0.00 3.60
482 725 8.651588 CGTTTAGATCACTATGATAAGGCAATC 58.348 37.037 0.00 0.00 37.20 2.67
490 733 2.492025 TGATAAGGCAATCAGGGGACT 58.508 47.619 0.00 0.00 46.44 3.85
491 734 3.664320 TGATAAGGCAATCAGGGGACTA 58.336 45.455 0.00 0.00 40.21 2.59
492 735 3.648067 TGATAAGGCAATCAGGGGACTAG 59.352 47.826 0.00 0.00 40.21 2.57
493 736 0.548510 AAGGCAATCAGGGGACTAGC 59.451 55.000 0.00 0.00 40.21 3.42
494 737 0.327000 AGGCAATCAGGGGACTAGCT 60.327 55.000 0.00 0.00 40.21 3.32
495 738 1.062121 AGGCAATCAGGGGACTAGCTA 60.062 52.381 0.00 0.00 40.21 3.32
700 953 2.363680 AGCACCGACCAGAGAATATCAG 59.636 50.000 0.00 0.00 0.00 2.90
714 967 7.700234 CAGAGAATATCAGCCACTAATACGATC 59.300 40.741 0.00 0.00 0.00 3.69
788 1054 4.448732 GCTGATTGGTTGTTTGTTCCATTC 59.551 41.667 0.00 0.00 34.33 2.67
834 1104 0.321122 CTTTGCTGCTTCCCTCGTCT 60.321 55.000 0.00 0.00 0.00 4.18
964 1278 5.420409 AGAGTAGCTAAAAGGACAAATCGG 58.580 41.667 0.00 0.00 0.00 4.18
966 1280 2.790433 AGCTAAAAGGACAAATCGGCA 58.210 42.857 0.00 0.00 0.00 5.69
992 1306 3.430098 GGTTGTGTGAGATTTGGTGCAAA 60.430 43.478 0.00 0.00 37.75 3.68
1015 1329 4.439057 TCGCAAGATGGTTAAGGTATGTC 58.561 43.478 0.00 0.00 45.01 3.06
1058 1376 6.014156 AGGACTAGCTAGTGTTCAGTTTGATT 60.014 38.462 30.70 0.42 36.50 2.57
1120 1440 5.278463 GCAGCAAAAGATTGTCCTCAAGTTA 60.278 40.000 0.00 0.00 38.85 2.24
1129 1449 2.563179 TGTCCTCAAGTTAGCTCTGGAC 59.437 50.000 14.32 14.32 38.04 4.02
1655 2155 3.733337 GGCTGCAGCATTATGTAGTAGT 58.267 45.455 37.63 0.00 44.36 2.73
1656 2156 3.496130 GGCTGCAGCATTATGTAGTAGTG 59.504 47.826 37.63 0.00 44.36 2.74
1657 2157 3.496130 GCTGCAGCATTATGTAGTAGTGG 59.504 47.826 33.36 0.00 41.59 4.00
1659 2159 3.118445 TGCAGCATTATGTAGTAGTGGCA 60.118 43.478 0.00 0.00 0.00 4.92
1664 2173 6.587990 CAGCATTATGTAGTAGTGGCATACTC 59.412 42.308 11.25 6.37 40.89 2.59
1681 2195 6.985059 GGCATACTCTAGTTGTTAGTTAAGGG 59.015 42.308 0.00 0.00 0.00 3.95
1704 2224 1.539388 GATGATGCGTCGGAGAGATCT 59.461 52.381 0.00 0.00 36.95 2.75
1829 2368 7.123697 TGCTCTACATATGTACAGTACAGGTTT 59.876 37.037 18.30 4.83 42.77 3.27
1831 2370 7.262772 TCTACATATGTACAGTACAGGTTTGC 58.737 38.462 18.30 0.00 42.77 3.68
1912 2451 2.463876 GAAACTCAGGTGTTTGCAAGC 58.536 47.619 6.31 6.31 39.86 4.01
1950 2489 3.126831 CAGAATCACTCAAGATACGGCC 58.873 50.000 0.00 0.00 0.00 6.13
1957 2496 1.372997 CAAGATACGGCCCGATCGG 60.373 63.158 27.65 27.65 0.00 4.18
1974 2513 1.376812 GGGCACGGTTAGTTCAGGG 60.377 63.158 0.00 0.00 0.00 4.45
1994 2533 6.212888 AGGGACTGCATCAAAATCATTTAC 57.787 37.500 0.00 0.00 37.18 2.01
1996 2535 6.096001 AGGGACTGCATCAAAATCATTTACTC 59.904 38.462 0.00 0.00 37.18 2.59
1997 2536 6.268566 GGACTGCATCAAAATCATTTACTCC 58.731 40.000 0.00 0.00 0.00 3.85
1998 2537 6.096001 GGACTGCATCAAAATCATTTACTCCT 59.904 38.462 0.00 0.00 0.00 3.69
2000 2539 7.542025 ACTGCATCAAAATCATTTACTCCTTC 58.458 34.615 0.00 0.00 0.00 3.46
2001 2540 7.395489 ACTGCATCAAAATCATTTACTCCTTCT 59.605 33.333 0.00 0.00 0.00 2.85
2002 2541 7.541162 TGCATCAAAATCATTTACTCCTTCTG 58.459 34.615 0.00 0.00 0.00 3.02
2003 2542 6.474751 GCATCAAAATCATTTACTCCTTCTGC 59.525 38.462 0.00 0.00 0.00 4.26
2004 2543 6.515272 TCAAAATCATTTACTCCTTCTGCC 57.485 37.500 0.00 0.00 0.00 4.85
2006 2545 6.375455 TCAAAATCATTTACTCCTTCTGCCTC 59.625 38.462 0.00 0.00 0.00 4.70
2007 2546 5.441718 AATCATTTACTCCTTCTGCCTCA 57.558 39.130 0.00 0.00 0.00 3.86
2008 2547 5.643421 ATCATTTACTCCTTCTGCCTCAT 57.357 39.130 0.00 0.00 0.00 2.90
2009 2548 6.753913 ATCATTTACTCCTTCTGCCTCATA 57.246 37.500 0.00 0.00 0.00 2.15
2011 2550 7.141758 TCATTTACTCCTTCTGCCTCATAAT 57.858 36.000 0.00 0.00 0.00 1.28
2013 2552 8.884323 TCATTTACTCCTTCTGCCTCATAATAT 58.116 33.333 0.00 0.00 0.00 1.28
2019 2558 7.663493 ACTCCTTCTGCCTCATAATATAAAAGC 59.337 37.037 0.00 0.00 0.00 3.51
2020 2559 6.650807 TCCTTCTGCCTCATAATATAAAAGCG 59.349 38.462 0.00 0.00 0.00 4.68
2021 2560 6.428159 CCTTCTGCCTCATAATATAAAAGCGT 59.572 38.462 0.00 0.00 0.00 5.07
2022 2561 7.041098 CCTTCTGCCTCATAATATAAAAGCGTT 60.041 37.037 0.00 0.00 0.00 4.84
2023 2562 7.801716 TCTGCCTCATAATATAAAAGCGTTT 57.198 32.000 2.53 2.53 0.00 3.60
2024 2563 8.220755 TCTGCCTCATAATATAAAAGCGTTTT 57.779 30.769 2.19 1.29 36.67 2.43
2025 2564 8.682710 TCTGCCTCATAATATAAAAGCGTTTTT 58.317 29.630 14.50 14.50 39.69 1.94
2026 2565 8.627487 TGCCTCATAATATAAAAGCGTTTTTG 57.373 30.769 18.77 2.50 37.12 2.44
2028 2567 8.743099 GCCTCATAATATAAAAGCGTTTTTGAC 58.257 33.333 18.77 0.00 37.12 3.18
2029 2568 9.781834 CCTCATAATATAAAAGCGTTTTTGACA 57.218 29.630 18.77 5.33 37.12 3.58
2031 2570 9.781834 TCATAATATAAAAGCGTTTTTGACAGG 57.218 29.630 18.77 4.26 37.12 4.00
2034 2573 3.436700 AAAAGCGTTTTTGACAGGAGG 57.563 42.857 9.31 0.00 35.26 4.30
2035 2574 0.668535 AAGCGTTTTTGACAGGAGGC 59.331 50.000 0.00 0.00 0.00 4.70
2036 2575 1.172812 AGCGTTTTTGACAGGAGGCC 61.173 55.000 0.00 0.00 0.00 5.19
2039 2578 2.711542 CGTTTTTGACAGGAGGCCTAT 58.288 47.619 4.42 0.00 29.64 2.57
2040 2579 3.081804 CGTTTTTGACAGGAGGCCTATT 58.918 45.455 4.42 0.00 29.64 1.73
2041 2580 3.506067 CGTTTTTGACAGGAGGCCTATTT 59.494 43.478 4.42 0.00 29.64 1.40
2042 2581 4.022329 CGTTTTTGACAGGAGGCCTATTTT 60.022 41.667 4.42 0.00 29.64 1.82
2043 2582 5.508994 CGTTTTTGACAGGAGGCCTATTTTT 60.509 40.000 4.42 0.00 29.64 1.94
2066 2605 6.993786 TTTTTGAACATCAGTACAGACACA 57.006 33.333 0.00 0.00 0.00 3.72
2068 2607 6.603237 TTTGAACATCAGTACAGACACAAG 57.397 37.500 0.00 0.00 0.00 3.16
2069 2608 4.058124 TGAACATCAGTACAGACACAAGC 58.942 43.478 0.00 0.00 0.00 4.01
2070 2609 2.677199 ACATCAGTACAGACACAAGCG 58.323 47.619 0.00 0.00 0.00 4.68
2071 2610 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
2073 2612 1.068588 TCAGTACAGACACAAGCGCTT 59.931 47.619 18.98 18.98 0.00 4.68
2074 2613 2.295070 TCAGTACAGACACAAGCGCTTA 59.705 45.455 24.55 0.72 0.00 3.09
2075 2614 3.056821 TCAGTACAGACACAAGCGCTTAT 60.057 43.478 24.55 9.39 0.00 1.73
2077 2616 5.043903 CAGTACAGACACAAGCGCTTATAT 58.956 41.667 24.55 10.78 0.00 0.86
2078 2617 6.038936 TCAGTACAGACACAAGCGCTTATATA 59.961 38.462 24.55 5.89 0.00 0.86
2079 2618 6.142480 CAGTACAGACACAAGCGCTTATATAC 59.858 42.308 24.55 16.63 0.00 1.47
2081 2620 4.804139 ACAGACACAAGCGCTTATATACAC 59.196 41.667 24.55 10.53 0.00 2.90
2082 2621 4.042398 AGACACAAGCGCTTATATACACG 58.958 43.478 24.55 10.39 0.00 4.49
2089 2628 3.532213 CGCTTATATACACGCGCATAC 57.468 47.619 5.73 0.00 39.11 2.39
2090 2629 2.912345 CGCTTATATACACGCGCATACA 59.088 45.455 5.73 0.00 39.11 2.29
2091 2630 3.241239 CGCTTATATACACGCGCATACAC 60.241 47.826 5.73 0.00 39.11 2.90
2093 2632 4.030306 GCTTATATACACGCGCATACACTC 59.970 45.833 5.73 0.00 0.00 3.51
2094 2633 3.636282 ATATACACGCGCATACACTCA 57.364 42.857 5.73 0.00 0.00 3.41
2095 2634 2.509052 ATACACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
2096 2635 1.835121 TACACGCGCATACACTCATC 58.165 50.000 5.73 0.00 0.00 2.92
2097 2636 0.173481 ACACGCGCATACACTCATCT 59.827 50.000 5.73 0.00 0.00 2.90
2098 2637 1.404035 ACACGCGCATACACTCATCTA 59.596 47.619 5.73 0.00 0.00 1.98
2099 2638 2.034685 ACACGCGCATACACTCATCTAT 59.965 45.455 5.73 0.00 0.00 1.98
2100 2639 2.406357 CACGCGCATACACTCATCTATG 59.594 50.000 5.73 0.00 0.00 2.23
2101 2640 2.293399 ACGCGCATACACTCATCTATGA 59.707 45.455 5.73 0.00 35.16 2.15
2110 2649 2.721274 CTCATCTATGAGCACCTCCG 57.279 55.000 7.02 0.00 46.63 4.63
2111 2650 2.234143 CTCATCTATGAGCACCTCCGA 58.766 52.381 7.02 0.00 46.63 4.55
2112 2651 2.625314 CTCATCTATGAGCACCTCCGAA 59.375 50.000 7.02 0.00 46.63 4.30
2113 2652 3.031013 TCATCTATGAGCACCTCCGAAA 58.969 45.455 0.00 0.00 32.11 3.46
2114 2653 3.068732 TCATCTATGAGCACCTCCGAAAG 59.931 47.826 0.00 0.00 32.11 2.62
2115 2654 2.735151 TCTATGAGCACCTCCGAAAGA 58.265 47.619 0.00 0.00 0.00 2.52
2116 2655 2.427453 TCTATGAGCACCTCCGAAAGAC 59.573 50.000 0.00 0.00 0.00 3.01
2117 2656 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
2118 2657 1.919240 TGAGCACCTCCGAAAGACTA 58.081 50.000 0.00 0.00 0.00 2.59
2119 2658 2.244695 TGAGCACCTCCGAAAGACTAA 58.755 47.619 0.00 0.00 0.00 2.24
2120 2659 2.231478 TGAGCACCTCCGAAAGACTAAG 59.769 50.000 0.00 0.00 0.00 2.18
2121 2660 2.231721 GAGCACCTCCGAAAGACTAAGT 59.768 50.000 0.00 0.00 0.00 2.24
2122 2661 2.231721 AGCACCTCCGAAAGACTAAGTC 59.768 50.000 0.00 0.00 0.00 3.01
2123 2662 2.864968 CACCTCCGAAAGACTAAGTCG 58.135 52.381 0.00 0.00 37.67 4.18
2126 2665 3.806591 CCGAAAGACTAAGTCGGCA 57.193 52.632 8.68 0.00 46.91 5.69
2127 2666 2.295253 CCGAAAGACTAAGTCGGCAT 57.705 50.000 8.68 0.00 46.91 4.40
2128 2667 3.431922 CCGAAAGACTAAGTCGGCATA 57.568 47.619 8.68 0.00 46.91 3.14
2129 2668 3.978687 CCGAAAGACTAAGTCGGCATAT 58.021 45.455 8.68 0.00 46.91 1.78
2130 2669 3.982058 CCGAAAGACTAAGTCGGCATATC 59.018 47.826 8.68 0.00 46.91 1.63
2131 2670 4.499188 CCGAAAGACTAAGTCGGCATATCA 60.499 45.833 8.68 0.00 46.91 2.15
2132 2671 5.223382 CGAAAGACTAAGTCGGCATATCAT 58.777 41.667 0.00 0.00 37.67 2.45
2133 2672 5.692204 CGAAAGACTAAGTCGGCATATCATT 59.308 40.000 0.00 0.00 37.67 2.57
2134 2673 6.201044 CGAAAGACTAAGTCGGCATATCATTT 59.799 38.462 0.00 0.00 37.67 2.32
2135 2674 7.254455 CGAAAGACTAAGTCGGCATATCATTTT 60.254 37.037 0.00 0.00 37.67 1.82
2136 2675 6.851222 AGACTAAGTCGGCATATCATTTTG 57.149 37.500 0.00 0.00 37.67 2.44
2137 2676 6.582636 AGACTAAGTCGGCATATCATTTTGA 58.417 36.000 0.00 0.00 37.67 2.69
2138 2677 6.703607 AGACTAAGTCGGCATATCATTTTGAG 59.296 38.462 0.00 0.00 37.67 3.02
2139 2678 6.582636 ACTAAGTCGGCATATCATTTTGAGA 58.417 36.000 0.00 0.00 0.00 3.27
2140 2679 7.220030 ACTAAGTCGGCATATCATTTTGAGAT 58.780 34.615 0.00 0.00 0.00 2.75
2141 2680 6.949352 AAGTCGGCATATCATTTTGAGATT 57.051 33.333 0.00 0.00 0.00 2.40
2142 2681 6.949352 AGTCGGCATATCATTTTGAGATTT 57.051 33.333 0.00 0.00 0.00 2.17
2143 2682 8.450578 AAGTCGGCATATCATTTTGAGATTTA 57.549 30.769 0.00 0.00 0.00 1.40
2144 2683 7.865707 AGTCGGCATATCATTTTGAGATTTAC 58.134 34.615 0.00 0.00 0.00 2.01
2145 2684 6.792250 GTCGGCATATCATTTTGAGATTTACG 59.208 38.462 0.00 0.00 0.00 3.18
2146 2685 6.704050 TCGGCATATCATTTTGAGATTTACGA 59.296 34.615 0.00 0.00 29.14 3.43
2147 2686 7.225734 TCGGCATATCATTTTGAGATTTACGAA 59.774 33.333 0.00 0.00 28.91 3.85
2148 2687 7.531871 CGGCATATCATTTTGAGATTTACGAAG 59.468 37.037 0.00 0.00 0.00 3.79
2150 2689 9.374960 GCATATCATTTTGAGATTTACGAAGTC 57.625 33.333 0.00 0.00 43.93 3.01
2153 2692 7.129109 TCATTTTGAGATTTACGAAGTCACC 57.871 36.000 0.00 0.00 43.93 4.02
2154 2693 5.585500 TTTTGAGATTTACGAAGTCACCG 57.415 39.130 0.00 0.00 43.93 4.94
2155 2694 4.508461 TTGAGATTTACGAAGTCACCGA 57.492 40.909 0.00 0.00 43.93 4.69
2156 2695 4.508461 TGAGATTTACGAAGTCACCGAA 57.492 40.909 0.00 0.00 43.93 4.30
2157 2696 4.873817 TGAGATTTACGAAGTCACCGAAA 58.126 39.130 0.00 0.00 43.93 3.46
2158 2697 5.291178 TGAGATTTACGAAGTCACCGAAAA 58.709 37.500 0.00 0.00 43.93 2.29
2159 2698 5.929992 TGAGATTTACGAAGTCACCGAAAAT 59.070 36.000 0.00 0.00 43.93 1.82
2160 2699 6.090358 TGAGATTTACGAAGTCACCGAAAATC 59.910 38.462 0.00 0.00 43.93 2.17
2161 2700 4.996062 TTTACGAAGTCACCGAAAATCC 57.004 40.909 0.00 0.00 43.93 3.01
2162 2701 2.833631 ACGAAGTCACCGAAAATCCT 57.166 45.000 0.00 0.00 29.74 3.24
2163 2702 2.413837 ACGAAGTCACCGAAAATCCTG 58.586 47.619 0.00 0.00 29.74 3.86
2164 2703 2.036733 ACGAAGTCACCGAAAATCCTGA 59.963 45.455 0.00 0.00 29.74 3.86
2165 2704 3.064207 CGAAGTCACCGAAAATCCTGAA 58.936 45.455 0.00 0.00 0.00 3.02
2166 2705 3.496884 CGAAGTCACCGAAAATCCTGAAA 59.503 43.478 0.00 0.00 0.00 2.69
2167 2706 4.154195 CGAAGTCACCGAAAATCCTGAAAT 59.846 41.667 0.00 0.00 0.00 2.17
2168 2707 5.350365 CGAAGTCACCGAAAATCCTGAAATA 59.650 40.000 0.00 0.00 0.00 1.40
2169 2708 6.128391 CGAAGTCACCGAAAATCCTGAAATAA 60.128 38.462 0.00 0.00 0.00 1.40
2170 2709 7.519032 AAGTCACCGAAAATCCTGAAATAAA 57.481 32.000 0.00 0.00 0.00 1.40
2171 2710 7.703058 AGTCACCGAAAATCCTGAAATAAAT 57.297 32.000 0.00 0.00 0.00 1.40
2172 2711 8.122472 AGTCACCGAAAATCCTGAAATAAATT 57.878 30.769 0.00 0.00 0.00 1.82
2173 2712 8.244113 AGTCACCGAAAATCCTGAAATAAATTC 58.756 33.333 0.00 0.00 38.60 2.17
2174 2713 8.026607 GTCACCGAAAATCCTGAAATAAATTCA 58.973 33.333 0.00 0.00 45.71 2.57
2193 2732 7.830940 AATTCAAAAATAAATGCGAGCATCA 57.169 28.000 11.26 3.11 35.31 3.07
2194 2733 8.428186 AATTCAAAAATAAATGCGAGCATCAT 57.572 26.923 11.26 6.33 35.31 2.45
2195 2734 6.815672 TCAAAAATAAATGCGAGCATCATG 57.184 33.333 11.26 3.86 35.31 3.07
2196 2735 6.562518 TCAAAAATAAATGCGAGCATCATGA 58.437 32.000 11.26 0.00 35.31 3.07
2197 2736 7.204604 TCAAAAATAAATGCGAGCATCATGAT 58.795 30.769 11.26 1.18 35.31 2.45
2198 2737 7.707464 TCAAAAATAAATGCGAGCATCATGATT 59.293 29.630 11.26 4.31 35.31 2.57
2199 2738 8.332464 CAAAAATAAATGCGAGCATCATGATTT 58.668 29.630 11.26 10.92 35.31 2.17
2200 2739 7.402811 AAATAAATGCGAGCATCATGATTTG 57.597 32.000 11.26 0.00 35.31 2.32
2201 2740 4.642445 AAATGCGAGCATCATGATTTGA 57.358 36.364 11.26 0.00 39.12 2.69
2202 2741 4.642445 AATGCGAGCATCATGATTTGAA 57.358 36.364 11.26 0.00 38.03 2.69
2203 2742 3.409851 TGCGAGCATCATGATTTGAAC 57.590 42.857 5.16 0.00 38.03 3.18
2204 2743 2.097954 TGCGAGCATCATGATTTGAACC 59.902 45.455 5.16 0.00 38.03 3.62
2205 2744 2.542411 GCGAGCATCATGATTTGAACCC 60.542 50.000 5.16 0.00 38.03 4.11
2206 2745 2.947652 CGAGCATCATGATTTGAACCCT 59.052 45.455 5.16 0.00 38.03 4.34
2207 2746 3.242969 CGAGCATCATGATTTGAACCCTG 60.243 47.826 5.16 0.00 38.03 4.45
2208 2747 3.028850 AGCATCATGATTTGAACCCTGG 58.971 45.455 5.16 0.00 38.03 4.45
2209 2748 2.762327 GCATCATGATTTGAACCCTGGT 59.238 45.455 5.16 0.00 38.03 4.00
2210 2749 3.429822 GCATCATGATTTGAACCCTGGTG 60.430 47.826 5.16 0.00 38.03 4.17
2211 2750 2.806434 TCATGATTTGAACCCTGGTGG 58.194 47.619 0.00 0.00 41.37 4.61
2221 2760 4.399764 CCTGGTGGGCTGGAGATA 57.600 61.111 0.00 0.00 0.00 1.98
2222 2761 1.832912 CCTGGTGGGCTGGAGATAC 59.167 63.158 0.00 0.00 0.00 2.24
2223 2762 1.700042 CCTGGTGGGCTGGAGATACC 61.700 65.000 0.00 0.00 39.54 2.73
2226 2765 1.144057 GTGGGCTGGAGATACCACG 59.856 63.158 0.00 0.00 44.64 4.94
2227 2766 2.063979 TGGGCTGGAGATACCACGG 61.064 63.158 0.00 0.00 44.64 4.94
2228 2767 2.064581 GGGCTGGAGATACCACGGT 61.065 63.158 0.00 0.00 44.64 4.83
2229 2768 1.442148 GGCTGGAGATACCACGGTC 59.558 63.158 0.00 0.00 44.64 4.79
2230 2769 1.442148 GCTGGAGATACCACGGTCC 59.558 63.158 0.00 0.00 44.64 4.46
2231 2770 2.029307 GCTGGAGATACCACGGTCCC 62.029 65.000 0.00 0.00 44.64 4.46
2232 2771 0.397254 CTGGAGATACCACGGTCCCT 60.397 60.000 0.00 0.00 44.64 4.20
2233 2772 0.396695 TGGAGATACCACGGTCCCTC 60.397 60.000 0.00 0.69 44.64 4.30
2234 2773 0.106116 GGAGATACCACGGTCCCTCT 60.106 60.000 13.93 6.65 38.79 3.69
2235 2774 1.144503 GGAGATACCACGGTCCCTCTA 59.855 57.143 13.93 0.00 38.79 2.43
2236 2775 2.423947 GGAGATACCACGGTCCCTCTAA 60.424 54.545 13.93 0.00 38.79 2.10
2237 2776 2.622470 GAGATACCACGGTCCCTCTAAC 59.378 54.545 0.00 0.00 0.00 2.34
2238 2777 1.685517 GATACCACGGTCCCTCTAACC 59.314 57.143 0.00 0.00 0.00 2.85
2239 2778 0.409092 TACCACGGTCCCTCTAACCA 59.591 55.000 0.00 0.00 36.53 3.67
2240 2779 0.252558 ACCACGGTCCCTCTAACCAT 60.253 55.000 0.00 0.00 36.53 3.55
2241 2780 0.464452 CCACGGTCCCTCTAACCATC 59.536 60.000 0.00 0.00 36.53 3.51
2242 2781 0.464452 CACGGTCCCTCTAACCATCC 59.536 60.000 0.00 0.00 36.53 3.51
2243 2782 0.042131 ACGGTCCCTCTAACCATCCA 59.958 55.000 0.00 0.00 36.53 3.41
2244 2783 1.200519 CGGTCCCTCTAACCATCCAA 58.799 55.000 0.00 0.00 36.53 3.53
2245 2784 1.134491 CGGTCCCTCTAACCATCCAAC 60.134 57.143 0.00 0.00 36.53 3.77
2246 2785 1.212195 GGTCCCTCTAACCATCCAACC 59.788 57.143 0.00 0.00 36.75 3.77
2247 2786 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
2248 2787 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
2249 2788 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
2250 2789 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
2251 2790 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
2252 2791 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
2262 2801 3.834726 CCACAGGTTGGTTCGCAA 58.165 55.556 0.00 0.00 41.10 4.85
2263 2802 1.358759 CCACAGGTTGGTTCGCAAC 59.641 57.895 0.00 0.00 41.10 4.17
2264 2803 1.380403 CCACAGGTTGGTTCGCAACA 61.380 55.000 6.70 0.00 41.10 3.33
2265 2804 0.453793 CACAGGTTGGTTCGCAACAA 59.546 50.000 6.70 0.00 34.47 2.83
2274 2813 1.896660 TTCGCAACAAGAGGCCCAC 60.897 57.895 0.00 0.00 0.00 4.61
2279 2818 1.817740 GCAACAAGAGGCCCACTTACA 60.818 52.381 11.62 0.00 0.00 2.41
2282 2821 2.863809 ACAAGAGGCCCACTTACAAAG 58.136 47.619 11.62 3.55 0.00 2.77
2285 2824 1.144913 AGAGGCCCACTTACAAAGCAA 59.855 47.619 0.00 0.00 0.00 3.91
2296 2835 8.527810 CCCACTTACAAAGCAAATTAAAGGATA 58.472 33.333 0.00 0.00 0.00 2.59
2319 2858 6.715347 AAACATGAAACTAGAACAAGCCTT 57.285 33.333 0.00 0.00 0.00 4.35
2324 2863 5.676552 TGAAACTAGAACAAGCCTTACACA 58.323 37.500 0.00 0.00 0.00 3.72
2325 2864 6.296026 TGAAACTAGAACAAGCCTTACACAT 58.704 36.000 0.00 0.00 0.00 3.21
2326 2865 6.770785 TGAAACTAGAACAAGCCTTACACATT 59.229 34.615 0.00 0.00 0.00 2.71
2327 2866 6.803154 AACTAGAACAAGCCTTACACATTC 57.197 37.500 0.00 0.00 0.00 2.67
2328 2867 6.115448 ACTAGAACAAGCCTTACACATTCT 57.885 37.500 0.00 0.00 0.00 2.40
2329 2868 6.166982 ACTAGAACAAGCCTTACACATTCTC 58.833 40.000 0.00 0.00 0.00 2.87
2330 2869 4.973168 AGAACAAGCCTTACACATTCTCA 58.027 39.130 0.00 0.00 0.00 3.27
2331 2870 5.376625 AGAACAAGCCTTACACATTCTCAA 58.623 37.500 0.00 0.00 0.00 3.02
2332 2871 5.827797 AGAACAAGCCTTACACATTCTCAAA 59.172 36.000 0.00 0.00 0.00 2.69
2333 2872 6.321181 AGAACAAGCCTTACACATTCTCAAAA 59.679 34.615 0.00 0.00 0.00 2.44
2334 2873 6.463995 ACAAGCCTTACACATTCTCAAAAA 57.536 33.333 0.00 0.00 0.00 1.94
2358 2897 3.983044 AGGAACAAGCCTTACACCTAG 57.017 47.619 0.00 0.00 33.46 3.02
2361 2900 0.249398 ACAAGCCTTACACCTAGCCG 59.751 55.000 0.00 0.00 0.00 5.52
2372 2911 2.203308 CTAGCCGAGGCCCGACTA 60.203 66.667 10.95 11.32 43.17 2.59
2396 2935 4.263572 CCTGGCCCCACGACAACA 62.264 66.667 0.00 0.00 0.00 3.33
2437 2976 1.343506 GAAGCGTCGTCGTTACCAAT 58.656 50.000 3.66 0.00 39.49 3.16
2440 2979 0.367887 GCGTCGTCGTTACCAATTCC 59.632 55.000 3.66 0.00 39.49 3.01
2452 2991 8.175716 GTCGTTACCAATTCCAAAAGATTAGAG 58.824 37.037 0.00 0.00 0.00 2.43
2463 3002 5.538433 CCAAAAGATTAGAGTTTTCACCCCA 59.462 40.000 0.00 0.00 0.00 4.96
2480 3019 0.107945 CCAGAGCCTAGCACAAGGAC 60.108 60.000 4.10 0.00 39.15 3.85
2486 3025 2.093235 AGCCTAGCACAAGGACAAGATC 60.093 50.000 4.10 0.00 39.15 2.75
2501 3040 6.506500 GACAAGATCCACATCAACATCTTT 57.493 37.500 0.00 0.00 34.08 2.52
2512 3051 6.006449 ACATCAACATCTTTAGGAAGCAAGT 58.994 36.000 0.00 0.00 32.75 3.16
2517 3056 6.803154 ACATCTTTAGGAAGCAAGTAACAC 57.197 37.500 0.00 0.00 32.75 3.32
2521 3060 7.253905 TCTTTAGGAAGCAAGTAACACCTAT 57.746 36.000 0.00 0.00 32.75 2.57
2522 3061 7.103641 TCTTTAGGAAGCAAGTAACACCTATG 58.896 38.462 0.00 0.00 32.75 2.23
2524 3063 3.054361 AGGAAGCAAGTAACACCTATGGG 60.054 47.826 0.00 0.00 38.88 4.00
2525 3064 2.420058 AGCAAGTAACACCTATGGGC 57.580 50.000 0.00 0.00 35.63 5.36
2527 3066 1.014352 CAAGTAACACCTATGGGCGC 58.986 55.000 0.00 0.00 35.63 6.53
2528 3067 0.107361 AAGTAACACCTATGGGCGCC 60.107 55.000 21.18 21.18 35.63 6.53
2529 3068 1.222387 GTAACACCTATGGGCGCCA 59.778 57.895 30.85 15.30 38.19 5.69
2530 3069 1.093496 GTAACACCTATGGGCGCCAC 61.093 60.000 30.85 18.39 35.80 5.01
2531 3070 2.260088 TAACACCTATGGGCGCCACC 62.260 60.000 30.85 12.89 35.80 4.61
2553 3092 3.283684 CCGGCGCCAGAAACACAA 61.284 61.111 28.98 0.00 0.00 3.33
2580 3119 3.887621 TGCTTAGAAACTCGCCTACAT 57.112 42.857 0.00 0.00 0.00 2.29
2631 3170 2.740055 GTCAGCTCAGCCACACCG 60.740 66.667 0.00 0.00 0.00 4.94
2642 3181 0.180406 GCCACACCGGATCTGGTTAT 59.820 55.000 24.29 12.33 41.38 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.181309 AGCTCTTTCGAAGAACACCTAG 57.819 45.455 0.00 0.00 45.90 3.02
8 9 3.059529 GTGAAGCTCTTTCGAAGAACACC 60.060 47.826 0.00 0.00 45.90 4.16
10 11 3.131396 GGTGAAGCTCTTTCGAAGAACA 58.869 45.455 0.00 0.00 45.90 3.18
71 72 2.743938 TCTGCTTGTCGTCTCAAAGTC 58.256 47.619 0.00 0.00 0.00 3.01
72 73 2.890808 TCTGCTTGTCGTCTCAAAGT 57.109 45.000 0.00 0.00 0.00 2.66
73 74 5.349817 ACATATTCTGCTTGTCGTCTCAAAG 59.650 40.000 0.00 0.00 0.00 2.77
74 75 5.237815 ACATATTCTGCTTGTCGTCTCAAA 58.762 37.500 0.00 0.00 0.00 2.69
75 76 4.820897 ACATATTCTGCTTGTCGTCTCAA 58.179 39.130 0.00 0.00 0.00 3.02
76 77 4.456280 ACATATTCTGCTTGTCGTCTCA 57.544 40.909 0.00 0.00 0.00 3.27
77 78 4.979197 CCTACATATTCTGCTTGTCGTCTC 59.021 45.833 0.00 0.00 0.00 3.36
78 79 4.402793 ACCTACATATTCTGCTTGTCGTCT 59.597 41.667 0.00 0.00 0.00 4.18
79 80 4.683832 ACCTACATATTCTGCTTGTCGTC 58.316 43.478 0.00 0.00 0.00 4.20
110 111 4.081807 AGACCGTTCTTACTTACATGGTCC 60.082 45.833 0.00 0.00 44.40 4.46
248 249 1.234615 ACGGGGTGAAAAGATGCACG 61.235 55.000 0.00 0.00 35.91 5.34
256 257 3.633065 CCTTTGTCTTTACGGGGTGAAAA 59.367 43.478 0.00 0.00 0.00 2.29
263 264 7.551617 AGTTATCAATACCTTTGTCTTTACGGG 59.448 37.037 0.00 0.00 0.00 5.28
273 274 7.279981 TCGAATGGTCAGTTATCAATACCTTTG 59.720 37.037 0.00 0.00 30.34 2.77
314 317 0.508641 CGCCGTCTCAAGAAAGTGTG 59.491 55.000 0.00 0.00 0.00 3.82
315 318 0.387929 TCGCCGTCTCAAGAAAGTGT 59.612 50.000 0.00 0.00 0.00 3.55
338 341 6.017026 GTCGAAAGAGGGTTCTGAATTTTTCT 60.017 38.462 0.00 0.00 43.49 2.52
339 342 6.143496 GTCGAAAGAGGGTTCTGAATTTTTC 58.857 40.000 0.00 0.00 43.49 2.29
434 437 7.639162 ACGCTCTTATATTTCTTTATGGACG 57.361 36.000 0.00 0.00 0.00 4.79
454 457 6.159988 GCCTTATCATAGTGATCTAAACGCT 58.840 40.000 0.00 0.00 38.26 5.07
455 458 5.926542 TGCCTTATCATAGTGATCTAAACGC 59.073 40.000 0.00 0.00 38.26 4.84
456 459 7.946655 TTGCCTTATCATAGTGATCTAAACG 57.053 36.000 0.00 0.00 38.26 3.60
457 460 9.494271 TGATTGCCTTATCATAGTGATCTAAAC 57.506 33.333 0.00 0.00 38.26 2.01
459 462 8.316946 CCTGATTGCCTTATCATAGTGATCTAA 58.683 37.037 0.00 0.00 38.26 2.10
460 463 7.093156 CCCTGATTGCCTTATCATAGTGATCTA 60.093 40.741 0.00 0.00 38.26 1.98
462 465 5.879223 CCCTGATTGCCTTATCATAGTGATC 59.121 44.000 0.00 0.00 38.26 2.92
463 466 5.280882 CCCCTGATTGCCTTATCATAGTGAT 60.281 44.000 0.00 0.00 40.72 3.06
465 468 4.042062 TCCCCTGATTGCCTTATCATAGTG 59.958 45.833 0.00 0.00 34.24 2.74
482 725 1.562783 GCCCTATAGCTAGTCCCCTG 58.437 60.000 0.00 0.00 0.00 4.45
490 733 2.109480 TCGAAAGAGGGCCCTATAGCTA 59.891 50.000 28.78 6.41 34.84 3.32
491 734 1.133136 TCGAAAGAGGGCCCTATAGCT 60.133 52.381 28.78 15.62 34.84 3.32
492 735 1.339097 TCGAAAGAGGGCCCTATAGC 58.661 55.000 28.78 16.40 34.84 2.97
571 824 1.342174 CTGGCTGCCACTCACATTTTT 59.658 47.619 19.30 0.00 0.00 1.94
598 851 5.304101 AGGCAGACAGAAGATATCTTGGTAG 59.696 44.000 22.61 15.22 35.73 3.18
700 953 3.060602 GGCTCAAGATCGTATTAGTGGC 58.939 50.000 0.00 0.00 0.00 5.01
714 967 0.323178 ATTGACAGGCCAGGCTCAAG 60.323 55.000 17.19 6.18 0.00 3.02
788 1054 1.219393 GGAGAGAGAAAGGTGGCCG 59.781 63.158 0.00 0.00 0.00 6.13
964 1278 3.304928 CCAAATCTCACACAACCTCTTGC 60.305 47.826 0.00 0.00 0.00 4.01
966 1280 3.885297 CACCAAATCTCACACAACCTCTT 59.115 43.478 0.00 0.00 0.00 2.85
992 1306 5.036117 ACATACCTTAACCATCTTGCGAT 57.964 39.130 0.00 0.00 0.00 4.58
1015 1329 0.588252 CTGGAACAAGACAAGCGGTG 59.412 55.000 0.00 0.00 38.70 4.94
1058 1376 8.586570 AAAATTCAGAACGATGCACAAAATTA 57.413 26.923 0.00 0.00 0.00 1.40
1120 1440 1.747367 CCTCTCGTCGTCCAGAGCT 60.747 63.158 4.35 0.00 35.69 4.09
1129 1449 0.107606 TCCTCCTCTTCCTCTCGTCG 60.108 60.000 0.00 0.00 0.00 5.12
1192 1614 0.546747 TCTTGTCCCCCTCCATCGTT 60.547 55.000 0.00 0.00 0.00 3.85
1282 1704 2.202544 GACACGCTGAGGAGCTCG 60.203 66.667 7.83 0.00 43.77 5.03
1399 1866 0.458716 CGTCCTTCTTCTTCTCGCCC 60.459 60.000 0.00 0.00 0.00 6.13
1655 2155 7.364408 CCCTTAACTAACAACTAGAGTATGCCA 60.364 40.741 0.00 0.00 0.00 4.92
1656 2156 6.985059 CCCTTAACTAACAACTAGAGTATGCC 59.015 42.308 0.00 0.00 0.00 4.40
1657 2157 6.985059 CCCCTTAACTAACAACTAGAGTATGC 59.015 42.308 0.00 0.00 0.00 3.14
1659 2159 8.342270 TCTCCCCTTAACTAACAACTAGAGTAT 58.658 37.037 0.00 0.00 0.00 2.12
1664 2173 7.419711 TCATCTCCCCTTAACTAACAACTAG 57.580 40.000 0.00 0.00 0.00 2.57
1681 2195 0.039617 CTCTCCGACGCATCATCTCC 60.040 60.000 0.00 0.00 0.00 3.71
1704 2224 3.303135 ACCGCTCGCAACTCTCCA 61.303 61.111 0.00 0.00 0.00 3.86
1768 2289 1.227615 GAGCCAGCATCTCTCTGCC 60.228 63.158 0.00 0.00 43.33 4.85
1804 2325 6.636562 ACCTGTACTGTACATATGTAGAGC 57.363 41.667 30.19 19.59 43.34 4.09
1831 2370 1.843368 AACCACCATTGCTGATCCAG 58.157 50.000 0.00 0.00 34.12 3.86
1935 2474 0.389391 ATCGGGCCGTATCTTGAGTG 59.611 55.000 27.32 0.00 0.00 3.51
1957 2496 0.672711 GTCCCTGAACTAACCGTGCC 60.673 60.000 0.00 0.00 0.00 5.01
1974 2513 7.093322 AGGAGTAAATGATTTTGATGCAGTC 57.907 36.000 0.00 0.00 0.00 3.51
1994 2533 7.148507 CGCTTTTATATTATGAGGCAGAAGGAG 60.149 40.741 0.00 0.00 0.00 3.69
1996 2535 6.428159 ACGCTTTTATATTATGAGGCAGAAGG 59.572 38.462 0.00 0.00 0.00 3.46
1997 2536 7.426929 ACGCTTTTATATTATGAGGCAGAAG 57.573 36.000 0.00 0.00 0.00 2.85
1998 2537 7.801716 AACGCTTTTATATTATGAGGCAGAA 57.198 32.000 0.00 0.00 0.00 3.02
2000 2539 8.745837 CAAAAACGCTTTTATATTATGAGGCAG 58.254 33.333 0.00 0.00 32.85 4.85
2001 2540 8.462811 TCAAAAACGCTTTTATATTATGAGGCA 58.537 29.630 0.00 0.00 32.85 4.75
2002 2541 8.743099 GTCAAAAACGCTTTTATATTATGAGGC 58.257 33.333 0.00 0.00 32.85 4.70
2003 2542 9.781834 TGTCAAAAACGCTTTTATATTATGAGG 57.218 29.630 0.00 0.00 32.85 3.86
2006 2545 9.781834 TCCTGTCAAAAACGCTTTTATATTATG 57.218 29.630 0.00 0.00 32.85 1.90
2008 2547 8.455682 CCTCCTGTCAAAAACGCTTTTATATTA 58.544 33.333 0.00 0.00 32.85 0.98
2009 2548 7.312899 CCTCCTGTCAAAAACGCTTTTATATT 58.687 34.615 0.00 0.00 32.85 1.28
2011 2550 5.335348 GCCTCCTGTCAAAAACGCTTTTATA 60.335 40.000 0.00 0.00 32.85 0.98
2013 2552 3.243267 GCCTCCTGTCAAAAACGCTTTTA 60.243 43.478 0.00 0.00 32.85 1.52
2014 2553 2.481276 GCCTCCTGTCAAAAACGCTTTT 60.481 45.455 0.00 0.00 35.02 2.27
2015 2554 1.067060 GCCTCCTGTCAAAAACGCTTT 59.933 47.619 0.00 0.00 0.00 3.51
2016 2555 0.668535 GCCTCCTGTCAAAAACGCTT 59.331 50.000 0.00 0.00 0.00 4.68
2017 2556 1.172812 GGCCTCCTGTCAAAAACGCT 61.173 55.000 0.00 0.00 0.00 5.07
2018 2557 1.172812 AGGCCTCCTGTCAAAAACGC 61.173 55.000 0.00 0.00 29.57 4.84
2019 2558 2.178912 TAGGCCTCCTGTCAAAAACG 57.821 50.000 9.68 0.00 34.61 3.60
2020 2559 5.468540 AAAATAGGCCTCCTGTCAAAAAC 57.531 39.130 9.68 0.00 34.61 2.43
2043 2582 6.993786 TGTGTCTGTACTGATGTTCAAAAA 57.006 33.333 5.69 0.00 0.00 1.94
2044 2583 6.458206 GCTTGTGTCTGTACTGATGTTCAAAA 60.458 38.462 5.69 0.61 0.00 2.44
2045 2584 5.007626 GCTTGTGTCTGTACTGATGTTCAAA 59.992 40.000 5.69 0.00 0.00 2.69
2047 2586 4.058124 GCTTGTGTCTGTACTGATGTTCA 58.942 43.478 5.69 0.00 0.00 3.18
2048 2587 3.121944 CGCTTGTGTCTGTACTGATGTTC 59.878 47.826 5.69 0.00 0.00 3.18
2049 2588 3.059884 CGCTTGTGTCTGTACTGATGTT 58.940 45.455 5.69 0.00 0.00 2.71
2050 2589 2.677199 CGCTTGTGTCTGTACTGATGT 58.323 47.619 5.69 0.00 0.00 3.06
2051 2590 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
2052 2591 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
2053 2592 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
2054 2593 1.502231 AAGCGCTTGTGTCTGTACTG 58.498 50.000 24.40 0.00 0.00 2.74
2056 2595 5.975344 TGTATATAAGCGCTTGTGTCTGTAC 59.025 40.000 32.23 21.30 0.00 2.90
2057 2596 5.975344 GTGTATATAAGCGCTTGTGTCTGTA 59.025 40.000 32.23 10.34 0.00 2.74
2058 2597 4.804139 GTGTATATAAGCGCTTGTGTCTGT 59.196 41.667 32.23 12.93 0.00 3.41
2059 2598 4.085568 CGTGTATATAAGCGCTTGTGTCTG 60.086 45.833 32.23 11.34 0.00 3.51
2061 2600 3.361724 GCGTGTATATAAGCGCTTGTGTC 60.362 47.826 32.23 18.77 45.48 3.67
2063 2602 2.408487 CGCGTGTATATAAGCGCTTGTG 60.408 50.000 32.23 15.21 46.56 3.33
2065 2604 2.471072 CGCGTGTATATAAGCGCTTG 57.529 50.000 32.23 13.89 46.56 4.01
2070 2609 3.918591 AGTGTATGCGCGTGTATATAAGC 59.081 43.478 13.61 0.00 0.00 3.09
2071 2610 5.151389 TGAGTGTATGCGCGTGTATATAAG 58.849 41.667 13.61 0.00 0.00 1.73
2073 2612 4.752661 TGAGTGTATGCGCGTGTATATA 57.247 40.909 13.61 4.77 0.00 0.86
2074 2613 3.636282 TGAGTGTATGCGCGTGTATAT 57.364 42.857 13.61 0.00 0.00 0.86
2075 2614 3.252458 AGATGAGTGTATGCGCGTGTATA 59.748 43.478 13.61 2.40 0.00 1.47
2077 2616 1.404035 AGATGAGTGTATGCGCGTGTA 59.596 47.619 13.61 0.00 0.00 2.90
2078 2617 0.173481 AGATGAGTGTATGCGCGTGT 59.827 50.000 13.61 0.00 0.00 4.49
2079 2618 2.119671 TAGATGAGTGTATGCGCGTG 57.880 50.000 13.61 0.00 0.00 5.34
2081 2620 2.933769 TCATAGATGAGTGTATGCGCG 58.066 47.619 0.00 0.00 32.98 6.86
2093 2632 3.068732 TCTTTCGGAGGTGCTCATAGATG 59.931 47.826 0.00 0.00 31.08 2.90
2094 2633 3.068873 GTCTTTCGGAGGTGCTCATAGAT 59.931 47.826 0.00 0.00 31.08 1.98
2095 2634 2.427453 GTCTTTCGGAGGTGCTCATAGA 59.573 50.000 0.00 0.00 31.08 1.98
2096 2635 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
2097 2636 2.457598 AGTCTTTCGGAGGTGCTCATA 58.542 47.619 0.00 0.00 31.08 2.15
2098 2637 1.270907 AGTCTTTCGGAGGTGCTCAT 58.729 50.000 0.00 0.00 31.08 2.90
2099 2638 1.919240 TAGTCTTTCGGAGGTGCTCA 58.081 50.000 0.00 0.00 31.08 4.26
2100 2639 2.231721 ACTTAGTCTTTCGGAGGTGCTC 59.768 50.000 0.00 0.00 0.00 4.26
2101 2640 2.231721 GACTTAGTCTTTCGGAGGTGCT 59.768 50.000 4.94 0.00 0.00 4.40
2102 2641 2.608268 GACTTAGTCTTTCGGAGGTGC 58.392 52.381 4.94 0.00 0.00 5.01
2103 2642 2.864968 CGACTTAGTCTTTCGGAGGTG 58.135 52.381 10.83 0.00 0.00 4.00
2109 2648 4.607955 TGATATGCCGACTTAGTCTTTCG 58.392 43.478 10.83 0.00 0.00 3.46
2110 2649 7.484035 AAATGATATGCCGACTTAGTCTTTC 57.516 36.000 10.83 0.26 0.00 2.62
2111 2650 7.552687 TCAAAATGATATGCCGACTTAGTCTTT 59.447 33.333 10.83 0.00 0.00 2.52
2112 2651 7.047891 TCAAAATGATATGCCGACTTAGTCTT 58.952 34.615 10.83 0.00 0.00 3.01
2113 2652 6.582636 TCAAAATGATATGCCGACTTAGTCT 58.417 36.000 10.83 0.00 0.00 3.24
2114 2653 6.701841 TCTCAAAATGATATGCCGACTTAGTC 59.298 38.462 1.64 1.64 0.00 2.59
2115 2654 6.582636 TCTCAAAATGATATGCCGACTTAGT 58.417 36.000 0.00 0.00 0.00 2.24
2116 2655 7.664082 ATCTCAAAATGATATGCCGACTTAG 57.336 36.000 0.00 0.00 0.00 2.18
2117 2656 8.450578 AAATCTCAAAATGATATGCCGACTTA 57.549 30.769 0.00 0.00 0.00 2.24
2118 2657 6.949352 AATCTCAAAATGATATGCCGACTT 57.051 33.333 0.00 0.00 0.00 3.01
2119 2658 6.949352 AAATCTCAAAATGATATGCCGACT 57.051 33.333 0.00 0.00 0.00 4.18
2120 2659 6.792250 CGTAAATCTCAAAATGATATGCCGAC 59.208 38.462 0.00 0.00 0.00 4.79
2121 2660 6.704050 TCGTAAATCTCAAAATGATATGCCGA 59.296 34.615 0.00 0.00 0.00 5.54
2122 2661 6.887368 TCGTAAATCTCAAAATGATATGCCG 58.113 36.000 0.00 0.00 0.00 5.69
2123 2662 8.345565 ACTTCGTAAATCTCAAAATGATATGCC 58.654 33.333 0.00 0.00 0.00 4.40
2124 2663 9.374960 GACTTCGTAAATCTCAAAATGATATGC 57.625 33.333 0.00 0.00 0.00 3.14
2127 2666 8.879759 GGTGACTTCGTAAATCTCAAAATGATA 58.120 33.333 0.00 0.00 0.00 2.15
2128 2667 7.413000 CGGTGACTTCGTAAATCTCAAAATGAT 60.413 37.037 0.00 0.00 0.00 2.45
2129 2668 6.128661 CGGTGACTTCGTAAATCTCAAAATGA 60.129 38.462 0.00 0.00 0.00 2.57
2130 2669 6.015504 CGGTGACTTCGTAAATCTCAAAATG 58.984 40.000 0.00 0.00 0.00 2.32
2131 2670 5.929992 TCGGTGACTTCGTAAATCTCAAAAT 59.070 36.000 0.00 0.00 0.00 1.82
2132 2671 5.291178 TCGGTGACTTCGTAAATCTCAAAA 58.709 37.500 0.00 0.00 0.00 2.44
2133 2672 4.873817 TCGGTGACTTCGTAAATCTCAAA 58.126 39.130 0.00 0.00 0.00 2.69
2134 2673 4.508461 TCGGTGACTTCGTAAATCTCAA 57.492 40.909 0.00 0.00 0.00 3.02
2135 2674 4.508461 TTCGGTGACTTCGTAAATCTCA 57.492 40.909 0.00 0.00 0.00 3.27
2136 2675 5.834239 TTTTCGGTGACTTCGTAAATCTC 57.166 39.130 0.00 0.00 0.00 2.75
2137 2676 5.350640 GGATTTTCGGTGACTTCGTAAATCT 59.649 40.000 17.95 0.00 45.18 2.40
2138 2677 5.350640 AGGATTTTCGGTGACTTCGTAAATC 59.649 40.000 13.56 13.56 45.15 2.17
2139 2678 5.121768 CAGGATTTTCGGTGACTTCGTAAAT 59.878 40.000 0.00 0.00 39.20 1.40
2140 2679 4.449743 CAGGATTTTCGGTGACTTCGTAAA 59.550 41.667 0.00 0.00 33.09 2.01
2141 2680 3.991773 CAGGATTTTCGGTGACTTCGTAA 59.008 43.478 0.00 0.00 0.00 3.18
2142 2681 3.256383 TCAGGATTTTCGGTGACTTCGTA 59.744 43.478 0.00 0.00 0.00 3.43
2143 2682 2.036733 TCAGGATTTTCGGTGACTTCGT 59.963 45.455 0.00 0.00 0.00 3.85
2144 2683 2.683968 TCAGGATTTTCGGTGACTTCG 58.316 47.619 0.00 0.00 0.00 3.79
2145 2684 5.629079 ATTTCAGGATTTTCGGTGACTTC 57.371 39.130 0.00 0.00 0.00 3.01
2146 2685 7.519032 TTTATTTCAGGATTTTCGGTGACTT 57.481 32.000 0.00 0.00 0.00 3.01
2147 2686 7.703058 ATTTATTTCAGGATTTTCGGTGACT 57.297 32.000 0.00 0.00 0.00 3.41
2148 2687 8.026607 TGAATTTATTTCAGGATTTTCGGTGAC 58.973 33.333 0.00 0.00 39.44 3.67
2149 2688 8.116651 TGAATTTATTTCAGGATTTTCGGTGA 57.883 30.769 0.00 0.00 39.44 4.02
2150 2689 8.755696 TTGAATTTATTTCAGGATTTTCGGTG 57.244 30.769 0.00 0.00 44.90 4.94
2151 2690 9.771534 TTTTGAATTTATTTCAGGATTTTCGGT 57.228 25.926 0.00 0.00 44.90 4.69
2167 2706 9.363763 TGATGCTCGCATTTATTTTTGAATTTA 57.636 25.926 5.79 0.00 36.70 1.40
2168 2707 8.254178 TGATGCTCGCATTTATTTTTGAATTT 57.746 26.923 5.79 0.00 36.70 1.82
2169 2708 7.830940 TGATGCTCGCATTTATTTTTGAATT 57.169 28.000 5.79 0.00 36.70 2.17
2170 2709 7.707464 TCATGATGCTCGCATTTATTTTTGAAT 59.293 29.630 5.79 0.00 36.70 2.57
2171 2710 7.034397 TCATGATGCTCGCATTTATTTTTGAA 58.966 30.769 5.79 0.00 36.70 2.69
2172 2711 6.562518 TCATGATGCTCGCATTTATTTTTGA 58.437 32.000 5.79 0.52 36.70 2.69
2173 2712 6.815672 TCATGATGCTCGCATTTATTTTTG 57.184 33.333 5.79 0.00 36.70 2.44
2174 2713 8.332464 CAAATCATGATGCTCGCATTTATTTTT 58.668 29.630 9.46 2.46 36.70 1.94
2175 2714 7.707464 TCAAATCATGATGCTCGCATTTATTTT 59.293 29.630 9.46 0.00 36.70 1.82
2176 2715 7.204604 TCAAATCATGATGCTCGCATTTATTT 58.795 30.769 9.46 7.17 36.70 1.40
2177 2716 6.741109 TCAAATCATGATGCTCGCATTTATT 58.259 32.000 9.46 1.98 36.70 1.40
2178 2717 6.321848 TCAAATCATGATGCTCGCATTTAT 57.678 33.333 9.46 1.86 36.70 1.40
2179 2718 5.754543 TCAAATCATGATGCTCGCATTTA 57.245 34.783 9.46 0.00 36.70 1.40
2180 2719 4.642445 TCAAATCATGATGCTCGCATTT 57.358 36.364 9.46 0.00 36.70 2.32
2181 2720 4.357142 GTTCAAATCATGATGCTCGCATT 58.643 39.130 9.46 0.00 38.03 3.56
2182 2721 3.243301 GGTTCAAATCATGATGCTCGCAT 60.243 43.478 9.46 3.70 38.03 4.73
2183 2722 2.097954 GGTTCAAATCATGATGCTCGCA 59.902 45.455 9.46 0.00 38.03 5.10
2184 2723 2.542411 GGGTTCAAATCATGATGCTCGC 60.542 50.000 9.46 3.88 38.03 5.03
2185 2724 2.947652 AGGGTTCAAATCATGATGCTCG 59.052 45.455 9.46 0.00 38.03 5.03
2186 2725 3.067742 CCAGGGTTCAAATCATGATGCTC 59.932 47.826 9.46 0.00 38.03 4.26
2187 2726 3.028850 CCAGGGTTCAAATCATGATGCT 58.971 45.455 9.46 0.00 38.03 3.79
2188 2727 2.762327 ACCAGGGTTCAAATCATGATGC 59.238 45.455 9.46 0.00 38.03 3.91
2189 2728 3.131577 CCACCAGGGTTCAAATCATGATG 59.868 47.826 9.46 0.00 38.03 3.07
2190 2729 3.368248 CCACCAGGGTTCAAATCATGAT 58.632 45.455 1.18 1.18 38.03 2.45
2191 2730 2.806434 CCACCAGGGTTCAAATCATGA 58.194 47.619 0.00 0.00 35.85 3.07
2204 2743 1.700042 GGTATCTCCAGCCCACCAGG 61.700 65.000 0.00 0.00 35.73 4.45
2205 2744 0.982852 TGGTATCTCCAGCCCACCAG 60.983 60.000 0.00 0.00 41.93 4.00
2206 2745 1.082019 TGGTATCTCCAGCCCACCA 59.918 57.895 0.00 0.00 41.93 4.17
2207 2746 4.066614 TGGTATCTCCAGCCCACC 57.933 61.111 0.00 0.00 41.93 4.61
2214 2753 0.396695 GAGGGACCGTGGTATCTCCA 60.397 60.000 8.93 0.00 45.01 3.86
2215 2754 0.106116 AGAGGGACCGTGGTATCTCC 60.106 60.000 13.97 2.63 31.86 3.71
2216 2755 2.622470 GTTAGAGGGACCGTGGTATCTC 59.378 54.545 11.12 11.12 0.00 2.75
2217 2756 2.664015 GTTAGAGGGACCGTGGTATCT 58.336 52.381 0.00 0.00 0.00 1.98
2218 2757 1.685517 GGTTAGAGGGACCGTGGTATC 59.314 57.143 0.00 0.00 0.00 2.24
2219 2758 1.007479 TGGTTAGAGGGACCGTGGTAT 59.993 52.381 0.00 0.00 40.13 2.73
2220 2759 0.409092 TGGTTAGAGGGACCGTGGTA 59.591 55.000 0.00 0.00 40.13 3.25
2221 2760 0.252558 ATGGTTAGAGGGACCGTGGT 60.253 55.000 0.00 0.00 40.13 4.16
2222 2761 0.464452 GATGGTTAGAGGGACCGTGG 59.536 60.000 0.00 0.00 40.13 4.94
2223 2762 0.464452 GGATGGTTAGAGGGACCGTG 59.536 60.000 0.00 0.00 40.13 4.94
2224 2763 0.042131 TGGATGGTTAGAGGGACCGT 59.958 55.000 0.00 0.00 40.13 4.83
2225 2764 1.134491 GTTGGATGGTTAGAGGGACCG 60.134 57.143 0.00 0.00 40.13 4.79
2226 2765 1.212195 GGTTGGATGGTTAGAGGGACC 59.788 57.143 0.00 0.00 37.69 4.46
2227 2766 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
2228 2767 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
2229 2768 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
2230 2769 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
2231 2770 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
2232 2771 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
2233 2772 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
2252 2791 1.452145 GGCCTCTTGTTGCGAACCAA 61.452 55.000 0.00 0.00 0.00 3.67
2253 2792 1.896660 GGCCTCTTGTTGCGAACCA 60.897 57.895 0.00 0.00 0.00 3.67
2254 2793 2.626780 GGGCCTCTTGTTGCGAACC 61.627 63.158 0.84 0.00 0.00 3.62
2255 2794 1.896660 TGGGCCTCTTGTTGCGAAC 60.897 57.895 4.53 0.00 0.00 3.95
2256 2795 1.896660 GTGGGCCTCTTGTTGCGAA 60.897 57.895 4.53 0.00 0.00 4.70
2257 2796 2.281484 GTGGGCCTCTTGTTGCGA 60.281 61.111 4.53 0.00 0.00 5.10
2258 2797 0.605319 TAAGTGGGCCTCTTGTTGCG 60.605 55.000 26.73 0.00 0.00 4.85
2259 2798 0.881796 GTAAGTGGGCCTCTTGTTGC 59.118 55.000 26.73 12.69 0.00 4.17
2260 2799 2.270352 TGTAAGTGGGCCTCTTGTTG 57.730 50.000 26.73 0.00 0.00 3.33
2261 2800 3.222603 CTTTGTAAGTGGGCCTCTTGTT 58.777 45.455 26.73 7.25 0.00 2.83
2262 2801 2.863809 CTTTGTAAGTGGGCCTCTTGT 58.136 47.619 26.73 7.95 0.00 3.16
2263 2802 1.541588 GCTTTGTAAGTGGGCCTCTTG 59.458 52.381 26.73 13.20 0.00 3.02
2264 2803 1.144913 TGCTTTGTAAGTGGGCCTCTT 59.855 47.619 23.01 23.01 0.00 2.85
2265 2804 0.771127 TGCTTTGTAAGTGGGCCTCT 59.229 50.000 4.53 2.86 0.00 3.69
2296 2835 6.715347 AAGGCTTGTTCTAGTTTCATGTTT 57.285 33.333 0.00 0.00 0.00 2.83
2302 2841 6.803154 ATGTGTAAGGCTTGTTCTAGTTTC 57.197 37.500 10.69 0.00 0.00 2.78
2334 2873 4.286707 AGGTGTAAGGCTTGTTCCTTTTT 58.713 39.130 10.69 0.00 43.62 1.94
2335 2874 3.910989 AGGTGTAAGGCTTGTTCCTTTT 58.089 40.909 10.69 0.00 43.62 2.27
2336 2875 3.595190 AGGTGTAAGGCTTGTTCCTTT 57.405 42.857 10.69 0.00 43.62 3.11
2338 2877 2.027100 GCTAGGTGTAAGGCTTGTTCCT 60.027 50.000 10.69 15.39 38.31 3.36
2339 2878 2.357075 GCTAGGTGTAAGGCTTGTTCC 58.643 52.381 10.69 8.95 0.00 3.62
2340 2879 2.357075 GGCTAGGTGTAAGGCTTGTTC 58.643 52.381 10.69 1.07 36.63 3.18
2341 2880 1.338769 CGGCTAGGTGTAAGGCTTGTT 60.339 52.381 10.69 0.00 37.38 2.83
2342 2881 0.249398 CGGCTAGGTGTAAGGCTTGT 59.751 55.000 10.69 0.00 37.38 3.16
2343 2882 0.535335 TCGGCTAGGTGTAAGGCTTG 59.465 55.000 10.69 0.00 37.38 4.01
2344 2883 0.824759 CTCGGCTAGGTGTAAGGCTT 59.175 55.000 4.58 4.58 37.38 4.35
2345 2884 1.043673 CCTCGGCTAGGTGTAAGGCT 61.044 60.000 0.00 0.00 40.94 4.58
2346 2885 1.442148 CCTCGGCTAGGTGTAAGGC 59.558 63.158 0.00 0.00 40.94 4.35
2358 2897 2.202892 CTTTAGTCGGGCCTCGGC 60.203 66.667 9.85 9.85 45.07 5.54
2361 2900 0.108281 GGTGTCTTTAGTCGGGCCTC 60.108 60.000 0.84 0.00 0.00 4.70
2367 2906 0.391263 GGGCCAGGTGTCTTTAGTCG 60.391 60.000 4.39 0.00 0.00 4.18
2372 2911 2.520968 GTGGGGCCAGGTGTCTTT 59.479 61.111 4.39 0.00 0.00 2.52
2402 2941 2.820767 CTTCGTGCCGTCACCCTCTC 62.821 65.000 0.00 0.00 40.04 3.20
2427 2966 7.881232 ACTCTAATCTTTTGGAATTGGTAACGA 59.119 33.333 0.00 0.00 42.51 3.85
2437 2976 6.266786 GGGGTGAAAACTCTAATCTTTTGGAA 59.733 38.462 0.00 0.00 0.00 3.53
2440 2979 6.490040 TCTGGGGTGAAAACTCTAATCTTTTG 59.510 38.462 0.00 0.00 0.00 2.44
2452 2991 1.950954 GCTAGGCTCTGGGGTGAAAAC 60.951 57.143 0.00 0.00 0.00 2.43
2463 3002 1.277557 CTTGTCCTTGTGCTAGGCTCT 59.722 52.381 0.00 0.00 35.15 4.09
2480 3019 6.825213 TCCTAAAGATGTTGATGTGGATCTTG 59.175 38.462 0.00 0.00 35.74 3.02
2486 3025 4.701651 TGCTTCCTAAAGATGTTGATGTGG 59.298 41.667 0.00 0.00 34.14 4.17
2490 3029 7.665559 TGTTACTTGCTTCCTAAAGATGTTGAT 59.334 33.333 0.00 0.00 34.14 2.57
2491 3030 6.995686 TGTTACTTGCTTCCTAAAGATGTTGA 59.004 34.615 0.00 0.00 34.14 3.18
2493 3032 6.206829 GGTGTTACTTGCTTCCTAAAGATGTT 59.793 38.462 0.00 0.00 34.14 2.71
2494 3033 5.705905 GGTGTTACTTGCTTCCTAAAGATGT 59.294 40.000 0.00 0.00 34.14 3.06
2496 3035 6.128138 AGGTGTTACTTGCTTCCTAAAGAT 57.872 37.500 0.00 0.00 34.14 2.40
2497 3036 5.562298 AGGTGTTACTTGCTTCCTAAAGA 57.438 39.130 0.00 0.00 34.14 2.52
2501 3040 4.163458 CCCATAGGTGTTACTTGCTTCCTA 59.837 45.833 0.00 0.00 33.10 2.94
2512 3051 1.222387 GTGGCGCCCATAGGTGTTA 59.778 57.895 26.77 0.00 46.14 2.41
2517 3056 4.910585 GACGGTGGCGCCCATAGG 62.911 72.222 26.77 11.27 35.28 2.57
2553 3092 4.338400 AGGCGAGTTTCTAAGCAAAAACTT 59.662 37.500 2.39 0.00 43.76 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.