Multiple sequence alignment - TraesCS5A01G171200
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5A01G171200
chr5A
100.000
1754
0
0
877
2630
364671363
364669610
0.000000e+00
3240.0
1
TraesCS5A01G171200
chr5A
100.000
549
0
0
1
549
364672239
364671691
0.000000e+00
1014.0
2
TraesCS5A01G171200
chr5A
72.500
600
117
37
1999
2579
481886845
481886275
1.630000e-32
150.0
3
TraesCS5A01G171200
chr5D
91.966
1755
116
14
879
2630
276264480
276262748
0.000000e+00
2436.0
4
TraesCS5A01G171200
chr5D
88.968
562
39
7
1
549
276265331
276264780
0.000000e+00
673.0
5
TraesCS5A01G171200
chr5D
88.128
219
25
1
2406
2623
330902977
330903195
2.600000e-65
259.0
6
TraesCS5A01G171200
chr5B
93.861
1466
86
4
877
2340
313115567
313114104
0.000000e+00
2206.0
7
TraesCS5A01G171200
chr5B
89.636
550
40
9
1
549
313116138
313115605
0.000000e+00
684.0
8
TraesCS5A01G171200
chr5B
88.843
242
25
2
2390
2630
313113774
313113534
1.980000e-76
296.0
9
TraesCS5A01G171200
chr5B
96.429
56
2
0
2574
2629
386085047
386085102
2.790000e-15
93.5
10
TraesCS5A01G171200
chr3D
80.671
626
94
12
2008
2630
141235267
141234666
6.630000e-126
460.0
11
TraesCS5A01G171200
chr3D
79.233
626
114
15
2011
2630
61840762
61840147
3.130000e-114
422.0
12
TraesCS5A01G171200
chr3D
73.052
616
131
33
2005
2599
68839716
68840317
4.470000e-43
185.0
13
TraesCS5A01G171200
chr7A
81.020
490
78
13
2111
2593
10001614
10002095
2.470000e-100
375.0
14
TraesCS5A01G171200
chr7A
75.190
395
64
31
2225
2599
610421519
610421899
3.500000e-34
156.0
15
TraesCS5A01G171200
chr3B
78.923
427
67
9
2207
2629
203337639
203337232
4.310000e-68
268.0
16
TraesCS5A01G171200
chr4A
79.883
343
62
6
2229
2568
727759490
727759152
7.270000e-61
244.0
17
TraesCS5A01G171200
chr4A
76.636
214
46
3
2202
2414
499340509
499340299
5.950000e-22
115.0
18
TraesCS5A01G171200
chr1A
73.127
614
126
35
2009
2599
522238429
522237832
1.610000e-42
183.0
19
TraesCS5A01G171200
chr2D
74.365
433
96
14
2005
2431
26447298
26447721
1.250000e-38
171.0
20
TraesCS5A01G171200
chr2A
71.635
624
136
34
2000
2599
676710988
676711594
1.640000e-27
134.0
21
TraesCS5A01G171200
chr1D
77.358
159
32
4
2012
2168
416659421
416659265
1.000000e-14
91.6
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5A01G171200
chr5A
364669610
364672239
2629
True
2127.0
3240
100.000
1
2630
2
chr5A.!!$R2
2629
1
TraesCS5A01G171200
chr5D
276262748
276265331
2583
True
1554.5
2436
90.467
1
2630
2
chr5D.!!$R1
2629
2
TraesCS5A01G171200
chr5B
313113534
313116138
2604
True
1062.0
2206
90.780
1
2630
3
chr5B.!!$R1
2629
3
TraesCS5A01G171200
chr3D
141234666
141235267
601
True
460.0
460
80.671
2008
2630
1
chr3D.!!$R2
622
4
TraesCS5A01G171200
chr3D
61840147
61840762
615
True
422.0
422
79.233
2011
2630
1
chr3D.!!$R1
619
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
519
535
2.346803
AGCAGCGCCCATATTATAACG
58.653
47.619
2.29
0.0
0.0
3.18
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2463
2795
0.611062
TCGAGGGAGACACGGAACAT
60.611
55.0
0.0
0.0
33.67
2.71
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
36
37
8.423353
GAAAATGAGTTTCAAGATTCGTACAC
57.577
34.615
0.00
0.00
44.42
2.90
38
39
3.427528
TGAGTTTCAAGATTCGTACACGC
59.572
43.478
0.00
0.00
39.60
5.34
108
109
3.452755
AAAAAGGGCTTAACACTGCAC
57.547
42.857
0.00
0.00
0.00
4.57
141
142
5.432645
TGAGTATTGTGTGGACAAGTCAAA
58.567
37.500
2.29
0.00
45.29
2.69
220
227
3.429085
GCATCACTGCCTGAAATAAACG
58.571
45.455
0.00
0.00
42.88
3.60
221
228
3.429085
CATCACTGCCTGAAATAAACGC
58.571
45.455
0.00
0.00
30.60
4.84
238
245
3.171705
GCCGAAAAATGCGACAACA
57.828
47.368
0.00
0.00
0.00
3.33
263
270
6.064717
AGTGCCAAATCTAAGACTTGAACTT
58.935
36.000
0.00
0.00
0.00
2.66
286
293
8.526147
ACTTTTGATTCCACCATAAGAAATCTG
58.474
33.333
0.00
0.00
0.00
2.90
333
340
7.995289
ACAAGTCAAGAATTAAACATGTGACA
58.005
30.769
0.00
0.00
37.07
3.58
380
395
7.391148
AATAATTACTTGTGCGAGACCAATT
57.609
32.000
0.00
0.00
0.00
2.32
390
405
2.552315
GCGAGACCAATTTTGACTTCCA
59.448
45.455
0.00
0.00
0.00
3.53
391
406
3.365364
GCGAGACCAATTTTGACTTCCAG
60.365
47.826
0.00
0.00
0.00
3.86
419
434
3.273048
GCAAACACATGCCCGCTA
58.727
55.556
0.00
0.00
40.49
4.26
456
471
5.046591
TCGTCTCCACTCCATGTTTAATTCT
60.047
40.000
0.00
0.00
0.00
2.40
491
507
3.868754
GCAACCTCTCTTACCAAACCGAT
60.869
47.826
0.00
0.00
0.00
4.18
492
508
4.324267
CAACCTCTCTTACCAAACCGATT
58.676
43.478
0.00
0.00
0.00
3.34
493
509
5.484715
CAACCTCTCTTACCAAACCGATTA
58.515
41.667
0.00
0.00
0.00
1.75
494
510
5.750352
ACCTCTCTTACCAAACCGATTAA
57.250
39.130
0.00
0.00
0.00
1.40
495
511
5.485620
ACCTCTCTTACCAAACCGATTAAC
58.514
41.667
0.00
0.00
0.00
2.01
496
512
4.874396
CCTCTCTTACCAAACCGATTAACC
59.126
45.833
0.00
0.00
0.00
2.85
497
513
4.497300
TCTCTTACCAAACCGATTAACCG
58.503
43.478
0.00
0.00
0.00
4.44
498
514
4.220382
TCTCTTACCAAACCGATTAACCGA
59.780
41.667
0.00
0.00
0.00
4.69
499
515
4.892433
TCTTACCAAACCGATTAACCGAA
58.108
39.130
0.00
0.00
0.00
4.30
500
516
4.931002
TCTTACCAAACCGATTAACCGAAG
59.069
41.667
0.00
0.00
0.00
3.79
519
535
2.346803
AGCAGCGCCCATATTATAACG
58.653
47.619
2.29
0.00
0.00
3.18
990
1006
3.992427
ACGCACTTACCTAGCTTAACAAC
59.008
43.478
0.00
0.00
0.00
3.32
1112
1128
2.659428
AGTCCTCCTTGCATTATTGGC
58.341
47.619
0.00
0.00
0.00
4.52
1117
1133
1.299316
CTTGCATTATTGGCCGGCG
60.299
57.895
22.54
5.48
0.00
6.46
1141
1157
1.861982
GGCCTACCTCTTCTACACCA
58.138
55.000
0.00
0.00
0.00
4.17
1153
1169
1.098050
CTACACCATGAAGCCCAAGC
58.902
55.000
0.00
0.00
40.32
4.01
1188
1204
1.522580
GAGCAAGATGGCCGTCTCC
60.523
63.158
27.71
20.27
0.00
3.71
1519
1535
0.032267
GCAGCTGGATACCTACGACC
59.968
60.000
17.12
0.00
0.00
4.79
1523
1539
1.399714
CTGGATACCTACGACCTGCA
58.600
55.000
0.00
0.00
0.00
4.41
1524
1540
1.964223
CTGGATACCTACGACCTGCAT
59.036
52.381
0.00
0.00
0.00
3.96
1528
1544
2.430248
TACCTACGACCTGCATCAGA
57.570
50.000
0.00
0.00
32.44
3.27
1625
1641
1.636148
TACCAGGGCAACGTAGAGTT
58.364
50.000
0.00
0.00
45.45
3.01
1663
1679
4.878878
CGGAGGGCTGGGTTAATC
57.121
61.111
0.00
0.00
0.00
1.75
1664
1680
1.227556
CGGAGGGCTGGGTTAATCG
60.228
63.158
0.00
0.00
0.00
3.34
1673
1689
3.069729
GGCTGGGTTAATCGACTACTCAT
59.930
47.826
0.00
0.00
0.00
2.90
1679
1695
2.898729
AATCGACTACTCATGCAGGG
57.101
50.000
0.00
0.00
0.00
4.45
1781
1797
9.865321
GTACTGTGATGTAACCTCTAATTAACA
57.135
33.333
0.00
0.00
0.00
2.41
1885
1901
8.160434
AGGATTATCTATTGATCCTGAGCATT
57.840
34.615
3.46
0.00
45.99
3.56
1923
1940
7.715686
GGGATCCTTTCTCGTATATTTTTGACT
59.284
37.037
12.58
0.00
0.00
3.41
1941
1958
7.628769
TTTGACTAAATCTATGAAGCATGCA
57.371
32.000
21.98
0.00
0.00
3.96
1953
1970
5.801350
TGAAGCATGCACATTACTAGAAC
57.199
39.130
21.98
0.00
0.00
3.01
1954
1971
5.491070
TGAAGCATGCACATTACTAGAACT
58.509
37.500
21.98
0.00
0.00
3.01
1961
1978
6.554334
TGCACATTACTAGAACTTGAAACC
57.446
37.500
0.00
0.00
0.00
3.27
1986
2003
2.289694
CCTAGTGCCAGATATTTCCCGG
60.290
54.545
0.00
0.00
0.00
5.73
1993
2010
2.154462
CAGATATTTCCCGGGTGCATC
58.846
52.381
22.86
17.91
0.00
3.91
1998
2015
0.404040
TTTCCCGGGTGCATCTTCTT
59.596
50.000
22.86
0.00
0.00
2.52
2046
2064
1.542375
ATGAGGCCCAACCAGACCT
60.542
57.895
0.00
0.00
43.14
3.85
2047
2065
0.253160
ATGAGGCCCAACCAGACCTA
60.253
55.000
0.00
0.00
43.14
3.08
2051
2069
1.375523
GCCCAACCAGACCTACACG
60.376
63.158
0.00
0.00
0.00
4.49
2052
2070
1.295423
CCCAACCAGACCTACACGG
59.705
63.158
0.00
0.00
39.35
4.94
2096
2144
3.365265
GGGCTCACTGTTTGGCCG
61.365
66.667
0.00
0.00
40.63
6.13
2098
2146
2.594592
GCTCACTGTTTGGCCGGT
60.595
61.111
1.90
0.00
0.00
5.28
2129
2178
1.033574
TTTAAAGCACCCCACAACCG
58.966
50.000
0.00
0.00
0.00
4.44
2327
2377
2.153401
CCCCCTTCACCTCACCACA
61.153
63.158
0.00
0.00
0.00
4.17
2341
2392
2.775384
TCACCACAAAACTCCTACCACT
59.225
45.455
0.00
0.00
0.00
4.00
2349
2400
5.785940
ACAAAACTCCTACCACTATTCTCCT
59.214
40.000
0.00
0.00
0.00
3.69
2357
2408
3.803340
ACCACTATTCTCCTCCCTTTCA
58.197
45.455
0.00
0.00
0.00
2.69
2379
2430
0.676782
CTTTCCCTCCAACGCGGATT
60.677
55.000
12.47
0.00
45.19
3.01
2463
2795
0.404426
TGTCCTCCTCTTCTCCGACA
59.596
55.000
0.00
0.00
0.00
4.35
2530
2864
7.337942
AGTTCAATCATCCATTTCTTGTACTCC
59.662
37.037
0.00
0.00
0.00
3.85
2542
2876
7.393841
TTTCTTGTACTCCTTCTAGCTAGAC
57.606
40.000
23.17
10.86
30.81
2.59
2561
2895
2.832129
GACCTGAGAACATGTGGTAGGA
59.168
50.000
19.56
0.00
0.00
2.94
2603
2937
3.814504
AGGGTTTGATCTGTGACCATT
57.185
42.857
0.00
0.00
33.81
3.16
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
22
23
3.224884
TCATGCGTGTACGAATCTTGA
57.775
42.857
8.82
0.00
43.02
3.02
33
34
1.808411
AAGTTTCGGATCATGCGTGT
58.192
45.000
5.68
0.00
31.47
4.49
36
37
3.469899
TTGAAAGTTTCGGATCATGCG
57.530
42.857
10.92
0.00
0.00
4.73
38
39
6.624423
AGGATTTTGAAAGTTTCGGATCATG
58.376
36.000
18.99
0.00
0.00
3.07
100
101
8.668353
CAATACTCAATATAACTTGTGCAGTGT
58.332
33.333
0.00
0.00
35.12
3.55
104
105
8.450180
CACACAATACTCAATATAACTTGTGCA
58.550
33.333
11.26
0.00
43.42
4.57
108
109
9.161629
TGTCCACACAATACTCAATATAACTTG
57.838
33.333
0.00
0.00
0.00
3.16
192
194
2.241160
TCAGGCAGTGATGCAATGTTT
58.759
42.857
2.29
0.00
36.33
2.83
220
227
1.451651
CTTGTTGTCGCATTTTTCGGC
59.548
47.619
0.00
0.00
0.00
5.54
221
228
2.467305
CACTTGTTGTCGCATTTTTCGG
59.533
45.455
0.00
0.00
0.00
4.30
238
245
6.064717
AGTTCAAGTCTTAGATTTGGCACTT
58.935
36.000
15.66
0.00
31.62
3.16
263
270
7.122650
GGTCAGATTTCTTATGGTGGAATCAAA
59.877
37.037
0.00
0.00
0.00
2.69
286
293
0.315568
ACGTGAAGTGAGAGCTGGTC
59.684
55.000
0.00
0.00
0.00
4.02
343
351
9.326413
CACAAGTAATTATTAGGTCTCGGAAAT
57.674
33.333
0.00
0.00
0.00
2.17
380
395
8.518430
TTGCTAATTATATGCTGGAAGTCAAA
57.482
30.769
0.00
0.00
35.30
2.69
390
405
6.449698
GGCATGTGTTTGCTAATTATATGCT
58.550
36.000
19.50
0.00
42.38
3.79
391
406
5.634859
GGGCATGTGTTTGCTAATTATATGC
59.365
40.000
15.39
15.39
42.38
3.14
419
434
1.139853
GGAGACGAATGGCCAGAGAAT
59.860
52.381
13.05
0.00
0.00
2.40
456
471
1.079405
GGTTGCGAGGGAATGTCGA
60.079
57.895
0.00
0.00
39.92
4.20
491
507
2.744709
GGGCGCTGCTTCGGTTAA
60.745
61.111
7.64
0.00
0.00
2.01
492
508
1.962321
TATGGGCGCTGCTTCGGTTA
61.962
55.000
7.64
0.00
0.00
2.85
493
509
2.608970
ATATGGGCGCTGCTTCGGTT
62.609
55.000
7.64
0.00
0.00
4.44
494
510
2.608970
AATATGGGCGCTGCTTCGGT
62.609
55.000
7.64
0.00
0.00
4.69
495
511
0.602638
TAATATGGGCGCTGCTTCGG
60.603
55.000
7.64
0.00
0.00
4.30
496
512
1.442769
ATAATATGGGCGCTGCTTCG
58.557
50.000
7.64
0.00
0.00
3.79
497
513
3.181520
CGTTATAATATGGGCGCTGCTTC
60.182
47.826
7.64
0.00
0.00
3.86
498
514
2.742053
CGTTATAATATGGGCGCTGCTT
59.258
45.455
7.64
0.00
0.00
3.91
499
515
2.028476
TCGTTATAATATGGGCGCTGCT
60.028
45.455
7.64
0.00
0.00
4.24
500
516
2.343101
TCGTTATAATATGGGCGCTGC
58.657
47.619
7.64
0.00
0.00
5.25
974
990
5.121142
GCGTGATTGTTGTTAAGCTAGGTAA
59.879
40.000
0.00
0.00
0.00
2.85
990
1006
2.008268
GCTTCCCCATGGCGTGATTG
62.008
60.000
6.09
0.59
0.00
2.67
1029
1045
1.344942
CGCCTTTGTTCTCGTCCTCG
61.345
60.000
0.00
0.00
38.55
4.63
1117
1133
4.893601
GAAGAGGTAGGCCGCCGC
62.894
72.222
13.56
13.56
40.50
6.53
1120
1136
0.102663
GTGTAGAAGAGGTAGGCCGC
59.897
60.000
0.00
0.00
40.50
6.53
1124
1140
4.442192
GCTTCATGGTGTAGAAGAGGTAGG
60.442
50.000
6.37
0.00
42.95
3.18
1132
1148
2.879756
GCTTGGGCTTCATGGTGTAGAA
60.880
50.000
0.00
0.00
35.22
2.10
1153
1169
4.189188
CACGGAGTAGGACGGCGG
62.189
72.222
13.24
0.00
41.61
6.13
1188
1204
2.333014
GAGGAGCTGAAGTCGAACTTG
58.667
52.381
0.00
0.00
38.80
3.16
1341
1357
1.301293
CTGGAAGAAGGTGGGGAGC
59.699
63.158
0.00
0.00
34.07
4.70
1502
1518
1.693627
CAGGTCGTAGGTATCCAGCT
58.306
55.000
0.00
0.00
36.25
4.24
1519
1535
2.350804
CGTTCACCTTGATCTGATGCAG
59.649
50.000
0.00
0.00
0.00
4.41
1523
1539
2.289631
TGCACGTTCACCTTGATCTGAT
60.290
45.455
0.00
0.00
0.00
2.90
1524
1540
1.069978
TGCACGTTCACCTTGATCTGA
59.930
47.619
0.00
0.00
0.00
3.27
1528
1544
1.841663
GCGTGCACGTTCACCTTGAT
61.842
55.000
36.80
0.00
42.22
2.57
1625
1641
4.142026
CCGGTAATTGAGTACCACATCAGA
60.142
45.833
8.21
0.00
43.34
3.27
1663
1679
2.898729
AATCCCTGCATGAGTAGTCG
57.101
50.000
0.00
0.00
0.00
4.18
1664
1680
4.101741
AGGTTAATCCCTGCATGAGTAGTC
59.898
45.833
0.00
0.00
36.75
2.59
1673
1689
2.825532
GAGCAAAAGGTTAATCCCTGCA
59.174
45.455
6.96
0.00
38.48
4.41
1679
1695
5.607119
TGTCGAAGAGCAAAAGGTTAATC
57.393
39.130
0.00
0.00
36.95
1.75
1781
1797
4.447138
TTGGAACCCAATTGACTACAGT
57.553
40.909
7.12
0.00
38.75
3.55
1871
1887
3.893326
TCTCGAAATGCTCAGGATCAA
57.107
42.857
0.00
0.00
0.00
2.57
1885
1901
4.019321
AGAAAGGATCCCACAAATCTCGAA
60.019
41.667
8.55
0.00
0.00
3.71
1923
1940
8.681486
AGTAATGTGCATGCTTCATAGATTTA
57.319
30.769
20.33
9.94
0.00
1.40
1939
1956
6.803154
AGGTTTCAAGTTCTAGTAATGTGC
57.197
37.500
0.00
0.00
0.00
4.57
1941
1958
8.218488
AGGAAAGGTTTCAAGTTCTAGTAATGT
58.782
33.333
4.89
0.00
38.92
2.71
1953
1970
3.486383
TGGCACTAGGAAAGGTTTCAAG
58.514
45.455
4.89
4.20
38.92
3.02
1954
1971
3.137544
TCTGGCACTAGGAAAGGTTTCAA
59.862
43.478
4.89
0.00
38.92
2.69
1961
1978
5.066593
GGGAAATATCTGGCACTAGGAAAG
58.933
45.833
0.00
0.00
0.00
2.62
1986
2003
1.818642
AGTGCTCAAGAAGATGCACC
58.181
50.000
12.42
0.00
44.91
5.01
1993
2010
2.989840
CACGTCCTTAGTGCTCAAGAAG
59.010
50.000
0.00
0.00
32.52
2.85
1998
2015
2.479837
CAAACACGTCCTTAGTGCTCA
58.520
47.619
0.00
0.00
42.94
4.26
2046
2064
3.150767
CAACCCAATTTCTTCCCGTGTA
58.849
45.455
0.00
0.00
0.00
2.90
2047
2065
1.960689
CAACCCAATTTCTTCCCGTGT
59.039
47.619
0.00
0.00
0.00
4.49
2051
2069
3.135712
ACCAAACAACCCAATTTCTTCCC
59.864
43.478
0.00
0.00
0.00
3.97
2052
2070
4.415881
ACCAAACAACCCAATTTCTTCC
57.584
40.909
0.00
0.00
0.00
3.46
2096
2144
3.171277
GCTTTAAACATCATGCGACACC
58.829
45.455
0.00
0.00
0.00
4.16
2098
2146
3.365868
GGTGCTTTAAACATCATGCGACA
60.366
43.478
0.00
0.00
0.00
4.35
2327
2377
5.425862
GGAGGAGAATAGTGGTAGGAGTTTT
59.574
44.000
0.00
0.00
0.00
2.43
2341
2392
5.501156
GAAAGCTTGAAAGGGAGGAGAATA
58.499
41.667
0.00
0.00
0.00
1.75
2349
2400
1.075536
GGAGGGAAAGCTTGAAAGGGA
59.924
52.381
0.00
0.00
0.00
4.20
2357
2408
1.966451
CGCGTTGGAGGGAAAGCTT
60.966
57.895
0.00
0.00
0.00
3.74
2379
2430
1.174078
TTACCTGCTCGTCGGTGTCA
61.174
55.000
0.00
0.00
34.76
3.58
2447
2778
1.479709
ACATGTCGGAGAAGAGGAGG
58.520
55.000
0.00
0.00
39.69
4.30
2463
2795
0.611062
TCGAGGGAGACACGGAACAT
60.611
55.000
0.00
0.00
33.67
2.71
2530
2864
5.359576
ACATGTTCTCAGGTCTAGCTAGAAG
59.640
44.000
24.85
17.80
33.05
2.85
2542
2876
4.494091
AATCCTACCACATGTTCTCAGG
57.506
45.455
0.00
0.68
0.00
3.86
2561
2895
2.092753
ACCACATGCTCTCGGATCAAAT
60.093
45.455
0.00
0.00
0.00
2.32
2569
2903
0.537188
AACCCTACCACATGCTCTCG
59.463
55.000
0.00
0.00
0.00
4.04
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.