Multiple sequence alignment - TraesCS5A01G171100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G171100 chr5A 100.000 5722 0 0 1 5722 364424015 364418294 0.000000e+00 10567.0
1 TraesCS5A01G171100 chr5A 98.837 430 4 1 359 787 691036102 691036531 0.000000e+00 765.0
2 TraesCS5A01G171100 chr5A 91.892 333 27 0 5384 5716 547075857 547076189 3.120000e-127 466.0
3 TraesCS5A01G171100 chr5D 96.333 4172 117 16 784 4936 275615844 275611690 0.000000e+00 6824.0
4 TraesCS5A01G171100 chr5D 94.194 620 36 0 5098 5717 275606282 275605663 0.000000e+00 946.0
5 TraesCS5A01G171100 chr5D 95.493 355 8 2 5 359 275616182 275615836 1.390000e-155 560.0
6 TraesCS5A01G171100 chr5D 93.976 166 10 0 4932 5097 275606488 275606323 9.520000e-63 252.0
7 TraesCS5A01G171100 chr5D 87.912 91 11 0 5004 5094 351008217 351008307 2.180000e-19 108.0
8 TraesCS5A01G171100 chr5B 95.500 2378 65 18 2630 5004 312911000 312908662 0.000000e+00 3760.0
9 TraesCS5A01G171100 chr5B 95.140 679 19 3 784 1454 312913119 312912447 0.000000e+00 1059.0
10 TraesCS5A01G171100 chr5B 89.383 810 54 14 1450 2255 312912177 312911396 0.000000e+00 990.0
11 TraesCS5A01G171100 chr5B 92.162 370 12 4 5 363 312913469 312913106 1.840000e-139 507.0
12 TraesCS5A01G171100 chr5B 85.143 175 22 3 2239 2411 312911381 312911209 5.890000e-40 176.0
13 TraesCS5A01G171100 chr5B 85.625 160 13 6 2417 2568 312911156 312910999 5.930000e-35 159.0
14 TraesCS5A01G171100 chr5B 89.899 99 9 1 5002 5099 377183233 377183135 6.020000e-25 126.0
15 TraesCS5A01G171100 chr5B 88.776 98 10 1 5002 5098 524549343 524549246 1.010000e-22 119.0
16 TraesCS5A01G171100 chr5B 86.598 97 13 0 5002 5098 642566315 642566219 2.180000e-19 108.0
17 TraesCS5A01G171100 chr1D 92.892 619 44 0 5098 5716 247833561 247834179 0.000000e+00 900.0
18 TraesCS5A01G171100 chr1D 95.711 443 16 3 352 792 462872803 462872362 0.000000e+00 710.0
19 TraesCS5A01G171100 chr2D 91.186 624 53 1 5098 5719 330202175 330202798 0.000000e+00 846.0
20 TraesCS5A01G171100 chr2D 96.729 428 14 0 359 786 590024576 590024149 0.000000e+00 713.0
21 TraesCS5A01G171100 chr1A 90.630 619 58 0 5098 5716 98490243 98490861 0.000000e+00 822.0
22 TraesCS5A01G171100 chr1A 92.708 96 7 0 5003 5098 540137584 540137679 7.730000e-29 139.0
23 TraesCS5A01G171100 chr3A 98.361 427 7 0 358 784 749638136 749638562 0.000000e+00 750.0
24 TraesCS5A01G171100 chr3A 93.023 43 3 0 3915 3957 100018275 100018233 4.790000e-06 63.9
25 TraesCS5A01G171100 chr6A 95.082 427 20 1 360 785 614390715 614390289 0.000000e+00 671.0
26 TraesCS5A01G171100 chr6A 92.699 452 31 2 335 786 50164889 50165338 0.000000e+00 651.0
27 TraesCS5A01G171100 chr1B 93.764 449 25 3 349 795 3212422 3211975 0.000000e+00 671.0
28 TraesCS5A01G171100 chr1B 86.458 96 12 1 5003 5098 626136358 626136452 2.820000e-18 104.0
29 TraesCS5A01G171100 chr7B 93.850 439 26 1 356 793 630589005 630588567 0.000000e+00 660.0
30 TraesCS5A01G171100 chr7B 90.751 173 14 2 5548 5719 214511916 214512087 4.460000e-56 230.0
31 TraesCS5A01G171100 chr7B 87.368 95 11 1 5003 5096 66415383 66415477 2.180000e-19 108.0
32 TraesCS5A01G171100 chr7B 73.422 301 69 11 2770 3063 55342469 55342173 1.010000e-17 102.0
33 TraesCS5A01G171100 chr2A 93.651 441 27 1 343 783 538075999 538076438 0.000000e+00 658.0
34 TraesCS5A01G171100 chr4A 85.209 622 62 18 5098 5719 724236106 724236697 3.790000e-171 612.0
35 TraesCS5A01G171100 chr6D 90.642 374 35 0 5349 5722 351770087 351769714 1.110000e-136 497.0
36 TraesCS5A01G171100 chr4D 79.853 273 48 7 5432 5700 450712503 450712234 5.850000e-45 193.0
37 TraesCS5A01G171100 chr7D 74.460 278 62 9 2792 3063 99954144 99953870 1.690000e-20 111.0
38 TraesCS5A01G171100 chr7A 74.286 280 59 13 2792 3063 102334076 102333802 7.840000e-19 106.0
39 TraesCS5A01G171100 chr3D 79.167 96 18 2 5002 5096 47241748 47241842 1.330000e-06 65.8
40 TraesCS5A01G171100 chr3D 97.143 35 1 0 3923 3957 83922898 83922864 6.190000e-05 60.2
41 TraesCS5A01G171100 chr3B 91.489 47 3 1 3909 3954 131497891 131497937 4.790000e-06 63.9
42 TraesCS5A01G171100 chr3B 84.058 69 8 3 3888 3954 132622960 132623027 4.790000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G171100 chr5A 364418294 364424015 5721 True 10567.0 10567 100.000000 1 5722 1 chr5A.!!$R1 5721
1 TraesCS5A01G171100 chr5D 275611690 275616182 4492 True 3692.0 6824 95.913000 5 4936 2 chr5D.!!$R2 4931
2 TraesCS5A01G171100 chr5D 275605663 275606488 825 True 599.0 946 94.085000 4932 5717 2 chr5D.!!$R1 785
3 TraesCS5A01G171100 chr5B 312908662 312913469 4807 True 1108.5 3760 90.492167 5 5004 6 chr5B.!!$R4 4999
4 TraesCS5A01G171100 chr1D 247833561 247834179 618 False 900.0 900 92.892000 5098 5716 1 chr1D.!!$F1 618
5 TraesCS5A01G171100 chr2D 330202175 330202798 623 False 846.0 846 91.186000 5098 5719 1 chr2D.!!$F1 621
6 TraesCS5A01G171100 chr1A 98490243 98490861 618 False 822.0 822 90.630000 5098 5716 1 chr1A.!!$F1 618
7 TraesCS5A01G171100 chr4A 724236106 724236697 591 False 612.0 612 85.209000 5098 5719 1 chr4A.!!$F1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 613 0.032515 TGCCCTCCGATCCTTACAGA 60.033 55.000 0.00 0.0 0.00 3.41 F
640 651 0.106708 ACGCAACATGCCGATCCTAT 59.893 50.000 7.83 0.0 41.12 2.57 F
641 652 0.792640 CGCAACATGCCGATCCTATC 59.207 55.000 0.00 0.0 41.12 2.08 F
1943 2243 1.244019 AATGTGTGCCGCTCCCTTTC 61.244 55.000 0.00 0.0 0.00 2.62 F
2235 2538 2.131776 AACACAAAAGACAACGGGGA 57.868 45.000 0.00 0.0 0.00 4.81 F
3124 3516 2.038269 GCCGCTGTCGATTTGGGAA 61.038 57.895 0.00 0.0 38.10 3.97 F
4576 4968 0.457035 GTTGGCATGCATACCTGTGG 59.543 55.000 21.36 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2455 2841 0.615331 AGAGGCATCACGTTGTCCAT 59.385 50.000 0.00 0.0 0.00 3.41 R
2464 2850 2.162408 GCTGTTAACCAAGAGGCATCAC 59.838 50.000 0.00 0.0 39.06 3.06 R
2636 3028 3.447229 GGACATTGGAAATGGGAAACGAT 59.553 43.478 5.08 0.0 0.00 3.73 R
3121 3513 1.211709 CCAAATGAACCGCCGTTCC 59.788 57.895 14.16 0.0 46.67 3.62 R
3985 4377 0.758734 TTAGGTGGCAGGGATCATCG 59.241 55.000 0.00 0.0 0.00 3.84 R
4644 5037 0.460987 CTCTCTCAACCATGACGCCC 60.461 60.000 0.00 0.0 0.00 6.13 R
5386 5831 0.108281 GACAAGGTACCCTCCGAAGC 60.108 60.000 8.74 0.0 30.89 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.181516 GGCTGCTATCAAGAAAGAACACG 60.182 47.826 0.00 0.00 0.00 4.49
33 34 1.732941 AGAAAGAACACGCACACACA 58.267 45.000 0.00 0.00 0.00 3.72
34 35 1.396996 AGAAAGAACACGCACACACAC 59.603 47.619 0.00 0.00 0.00 3.82
35 36 1.129624 GAAAGAACACGCACACACACA 59.870 47.619 0.00 0.00 0.00 3.72
36 37 0.446222 AAGAACACGCACACACACAC 59.554 50.000 0.00 0.00 0.00 3.82
37 38 0.672091 AGAACACGCACACACACACA 60.672 50.000 0.00 0.00 0.00 3.72
38 39 0.376852 GAACACGCACACACACACAT 59.623 50.000 0.00 0.00 0.00 3.21
206 217 3.225940 AGGTTTTCTGGGCTTCTCTTTG 58.774 45.455 0.00 0.00 0.00 2.77
291 302 7.961325 ACACATGTTTATTTTTCCATTGACC 57.039 32.000 0.00 0.00 0.00 4.02
369 380 7.886338 ACAAGGTTATGAAAAGAGTGAATTCC 58.114 34.615 2.27 0.00 0.00 3.01
370 381 7.505585 ACAAGGTTATGAAAAGAGTGAATTCCA 59.494 33.333 2.27 0.00 0.00 3.53
371 382 7.454260 AGGTTATGAAAAGAGTGAATTCCAC 57.546 36.000 2.27 1.64 46.03 4.02
383 394 5.738619 GTGAATTCCACTTTTTACCCCAT 57.261 39.130 2.27 0.00 42.44 4.00
384 395 6.844097 GTGAATTCCACTTTTTACCCCATA 57.156 37.500 2.27 0.00 42.44 2.74
385 396 7.418337 GTGAATTCCACTTTTTACCCCATAT 57.582 36.000 2.27 0.00 42.44 1.78
386 397 7.847096 GTGAATTCCACTTTTTACCCCATATT 58.153 34.615 2.27 0.00 42.44 1.28
387 398 8.318412 GTGAATTCCACTTTTTACCCCATATTT 58.682 33.333 2.27 0.00 42.44 1.40
388 399 8.317679 TGAATTCCACTTTTTACCCCATATTTG 58.682 33.333 2.27 0.00 0.00 2.32
389 400 7.806680 ATTCCACTTTTTACCCCATATTTGT 57.193 32.000 0.00 0.00 0.00 2.83
390 401 8.903059 ATTCCACTTTTTACCCCATATTTGTA 57.097 30.769 0.00 0.00 0.00 2.41
391 402 7.706100 TCCACTTTTTACCCCATATTTGTAC 57.294 36.000 0.00 0.00 0.00 2.90
392 403 7.239438 TCCACTTTTTACCCCATATTTGTACA 58.761 34.615 0.00 0.00 0.00 2.90
393 404 7.896496 TCCACTTTTTACCCCATATTTGTACAT 59.104 33.333 0.00 0.00 0.00 2.29
394 405 8.536175 CCACTTTTTACCCCATATTTGTACATT 58.464 33.333 0.00 0.00 0.00 2.71
395 406 9.936759 CACTTTTTACCCCATATTTGTACATTT 57.063 29.630 0.00 0.00 0.00 2.32
396 407 9.936759 ACTTTTTACCCCATATTTGTACATTTG 57.063 29.630 0.00 0.00 0.00 2.32
397 408 9.936759 CTTTTTACCCCATATTTGTACATTTGT 57.063 29.630 0.00 0.00 0.00 2.83
398 409 9.712305 TTTTTACCCCATATTTGTACATTTGTG 57.288 29.630 0.00 0.00 0.00 3.33
399 410 8.651589 TTTACCCCATATTTGTACATTTGTGA 57.348 30.769 0.00 0.00 0.00 3.58
400 411 6.524101 ACCCCATATTTGTACATTTGTGAC 57.476 37.500 0.00 0.00 0.00 3.67
401 412 6.013379 ACCCCATATTTGTACATTTGTGACA 58.987 36.000 0.00 0.00 0.00 3.58
402 413 6.071616 ACCCCATATTTGTACATTTGTGACAC 60.072 38.462 0.00 0.00 0.00 3.67
403 414 6.152661 CCCCATATTTGTACATTTGTGACACT 59.847 38.462 7.20 0.00 0.00 3.55
404 415 7.338196 CCCCATATTTGTACATTTGTGACACTA 59.662 37.037 7.20 0.00 0.00 2.74
405 416 8.735315 CCCATATTTGTACATTTGTGACACTAA 58.265 33.333 7.20 6.01 0.00 2.24
411 422 7.675962 TGTACATTTGTGACACTAATTACCC 57.324 36.000 11.83 3.14 0.00 3.69
412 423 6.655848 TGTACATTTGTGACACTAATTACCCC 59.344 38.462 11.83 1.73 0.00 4.95
413 424 4.698304 ACATTTGTGACACTAATTACCCCG 59.302 41.667 11.83 3.92 0.00 5.73
414 425 4.354893 TTTGTGACACTAATTACCCCGT 57.645 40.909 7.20 0.00 0.00 5.28
415 426 3.598019 TGTGACACTAATTACCCCGTC 57.402 47.619 7.20 0.00 0.00 4.79
416 427 2.094597 TGTGACACTAATTACCCCGTCG 60.095 50.000 7.20 0.00 0.00 5.12
417 428 2.164219 GTGACACTAATTACCCCGTCGA 59.836 50.000 0.00 0.00 0.00 4.20
418 429 2.424601 TGACACTAATTACCCCGTCGAG 59.575 50.000 0.00 0.00 0.00 4.04
419 430 2.424956 GACACTAATTACCCCGTCGAGT 59.575 50.000 0.00 0.00 0.00 4.18
420 431 2.165030 ACACTAATTACCCCGTCGAGTG 59.835 50.000 0.00 0.00 38.96 3.51
421 432 2.424601 CACTAATTACCCCGTCGAGTGA 59.575 50.000 0.00 0.00 35.87 3.41
422 433 3.091545 ACTAATTACCCCGTCGAGTGAA 58.908 45.455 0.00 0.00 0.00 3.18
423 434 3.511146 ACTAATTACCCCGTCGAGTGAAA 59.489 43.478 0.00 0.00 0.00 2.69
424 435 3.405823 AATTACCCCGTCGAGTGAAAA 57.594 42.857 0.00 0.00 0.00 2.29
425 436 3.622166 ATTACCCCGTCGAGTGAAAAT 57.378 42.857 0.00 0.00 0.00 1.82
426 437 3.405823 TTACCCCGTCGAGTGAAAATT 57.594 42.857 0.00 0.00 0.00 1.82
427 438 1.804601 ACCCCGTCGAGTGAAAATTC 58.195 50.000 0.00 0.00 0.00 2.17
428 439 0.719465 CCCCGTCGAGTGAAAATTCG 59.281 55.000 0.00 0.00 38.13 3.34
429 440 1.425412 CCCGTCGAGTGAAAATTCGT 58.575 50.000 0.00 0.00 37.99 3.85
430 441 1.389106 CCCGTCGAGTGAAAATTCGTC 59.611 52.381 0.00 0.00 37.99 4.20
431 442 2.325761 CCGTCGAGTGAAAATTCGTCT 58.674 47.619 0.00 0.00 37.99 4.18
432 443 3.495193 CCGTCGAGTGAAAATTCGTCTA 58.505 45.455 0.00 0.00 37.99 2.59
433 444 3.542704 CCGTCGAGTGAAAATTCGTCTAG 59.457 47.826 0.00 0.00 37.99 2.43
434 445 4.400845 CGTCGAGTGAAAATTCGTCTAGA 58.599 43.478 0.00 0.00 37.99 2.43
435 446 4.849926 CGTCGAGTGAAAATTCGTCTAGAA 59.150 41.667 0.00 0.00 43.93 2.10
447 458 6.555463 ATTCGTCTAGAATACCCCTTTTGA 57.445 37.500 0.00 0.00 46.99 2.69
448 459 6.363167 TTCGTCTAGAATACCCCTTTTGAA 57.637 37.500 0.00 0.00 33.14 2.69
449 460 6.363167 TCGTCTAGAATACCCCTTTTGAAA 57.637 37.500 0.00 0.00 0.00 2.69
450 461 6.403878 TCGTCTAGAATACCCCTTTTGAAAG 58.596 40.000 0.00 0.00 35.79 2.62
451 462 5.064834 CGTCTAGAATACCCCTTTTGAAAGC 59.935 44.000 0.00 0.00 34.69 3.51
452 463 6.181190 GTCTAGAATACCCCTTTTGAAAGCT 58.819 40.000 0.00 0.00 34.69 3.74
453 464 6.659668 GTCTAGAATACCCCTTTTGAAAGCTT 59.340 38.462 0.00 0.00 34.69 3.74
454 465 7.176865 GTCTAGAATACCCCTTTTGAAAGCTTT 59.823 37.037 12.53 12.53 34.69 3.51
455 466 6.101650 AGAATACCCCTTTTGAAAGCTTTG 57.898 37.500 18.30 1.01 34.69 2.77
456 467 4.890158 ATACCCCTTTTGAAAGCTTTGG 57.110 40.909 18.30 12.01 34.69 3.28
457 468 2.758130 ACCCCTTTTGAAAGCTTTGGA 58.242 42.857 18.30 1.30 34.69 3.53
458 469 2.434336 ACCCCTTTTGAAAGCTTTGGAC 59.566 45.455 18.30 2.61 34.69 4.02
459 470 2.700371 CCCCTTTTGAAAGCTTTGGACT 59.300 45.455 18.30 0.00 34.69 3.85
460 471 3.243873 CCCCTTTTGAAAGCTTTGGACTC 60.244 47.826 18.30 1.78 34.69 3.36
461 472 3.638627 CCCTTTTGAAAGCTTTGGACTCT 59.361 43.478 18.30 0.00 34.69 3.24
462 473 4.261783 CCCTTTTGAAAGCTTTGGACTCTC 60.262 45.833 18.30 0.12 34.69 3.20
463 474 4.531332 CTTTTGAAAGCTTTGGACTCTCG 58.469 43.478 18.30 0.00 0.00 4.04
464 475 2.910688 TGAAAGCTTTGGACTCTCGT 57.089 45.000 18.30 0.00 0.00 4.18
465 476 3.194005 TGAAAGCTTTGGACTCTCGTT 57.806 42.857 18.30 0.00 0.00 3.85
466 477 3.541632 TGAAAGCTTTGGACTCTCGTTT 58.458 40.909 18.30 0.00 0.00 3.60
467 478 3.945285 TGAAAGCTTTGGACTCTCGTTTT 59.055 39.130 18.30 0.00 0.00 2.43
468 479 4.035208 TGAAAGCTTTGGACTCTCGTTTTC 59.965 41.667 18.30 0.00 0.00 2.29
469 480 3.477210 AGCTTTGGACTCTCGTTTTCT 57.523 42.857 0.00 0.00 0.00 2.52
470 481 3.134458 AGCTTTGGACTCTCGTTTTCTG 58.866 45.455 0.00 0.00 0.00 3.02
471 482 3.131396 GCTTTGGACTCTCGTTTTCTGA 58.869 45.455 0.00 0.00 0.00 3.27
472 483 3.748568 GCTTTGGACTCTCGTTTTCTGAT 59.251 43.478 0.00 0.00 0.00 2.90
473 484 4.377841 GCTTTGGACTCTCGTTTTCTGATG 60.378 45.833 0.00 0.00 0.00 3.07
474 485 2.688507 TGGACTCTCGTTTTCTGATGC 58.311 47.619 0.00 0.00 0.00 3.91
475 486 1.656095 GGACTCTCGTTTTCTGATGCG 59.344 52.381 0.00 0.00 0.00 4.73
476 487 2.329379 GACTCTCGTTTTCTGATGCGT 58.671 47.619 0.00 0.00 0.00 5.24
477 488 2.061773 ACTCTCGTTTTCTGATGCGTG 58.938 47.619 0.00 0.00 0.00 5.34
478 489 2.061773 CTCTCGTTTTCTGATGCGTGT 58.938 47.619 0.00 0.00 0.00 4.49
479 490 2.058798 TCTCGTTTTCTGATGCGTGTC 58.941 47.619 0.00 0.00 0.00 3.67
480 491 1.126846 CTCGTTTTCTGATGCGTGTCC 59.873 52.381 0.00 0.00 0.00 4.02
481 492 0.865111 CGTTTTCTGATGCGTGTCCA 59.135 50.000 0.00 0.00 0.00 4.02
482 493 1.464608 CGTTTTCTGATGCGTGTCCAT 59.535 47.619 0.00 0.00 0.00 3.41
483 494 2.474526 CGTTTTCTGATGCGTGTCCATC 60.475 50.000 0.00 0.00 41.51 3.51
484 495 2.470983 TTTCTGATGCGTGTCCATCA 57.529 45.000 4.94 4.94 46.78 3.07
486 497 4.939399 TGATGCGTGTCCATCAGG 57.061 55.556 1.03 0.00 44.79 3.86
487 498 1.982430 TGATGCGTGTCCATCAGGT 59.018 52.632 1.03 0.00 44.79 4.00
488 499 1.190643 TGATGCGTGTCCATCAGGTA 58.809 50.000 1.03 0.00 44.79 3.08
489 500 1.552792 TGATGCGTGTCCATCAGGTAA 59.447 47.619 1.03 0.00 44.79 2.85
490 501 2.205074 GATGCGTGTCCATCAGGTAAG 58.795 52.381 0.00 0.00 40.96 2.34
491 502 0.249120 TGCGTGTCCATCAGGTAAGG 59.751 55.000 0.00 0.00 35.89 2.69
492 503 0.249398 GCGTGTCCATCAGGTAAGGT 59.751 55.000 0.00 0.00 35.89 3.50
493 504 2.007049 GCGTGTCCATCAGGTAAGGTG 61.007 57.143 0.00 0.00 35.89 4.00
494 505 1.275291 CGTGTCCATCAGGTAAGGTGT 59.725 52.381 0.00 0.00 35.89 4.16
495 506 2.699954 GTGTCCATCAGGTAAGGTGTG 58.300 52.381 0.00 0.00 35.89 3.82
496 507 2.301870 GTGTCCATCAGGTAAGGTGTGA 59.698 50.000 0.00 0.00 35.89 3.58
497 508 2.567169 TGTCCATCAGGTAAGGTGTGAG 59.433 50.000 0.00 0.00 35.89 3.51
498 509 2.093447 GTCCATCAGGTAAGGTGTGAGG 60.093 54.545 0.00 0.00 35.89 3.86
499 510 1.909302 CCATCAGGTAAGGTGTGAGGT 59.091 52.381 0.00 0.00 0.00 3.85
500 511 2.355108 CCATCAGGTAAGGTGTGAGGTG 60.355 54.545 0.00 0.00 0.00 4.00
501 512 2.391926 TCAGGTAAGGTGTGAGGTGA 57.608 50.000 0.00 0.00 0.00 4.02
502 513 2.902608 TCAGGTAAGGTGTGAGGTGAT 58.097 47.619 0.00 0.00 0.00 3.06
503 514 2.567169 TCAGGTAAGGTGTGAGGTGATG 59.433 50.000 0.00 0.00 0.00 3.07
504 515 1.279271 AGGTAAGGTGTGAGGTGATGC 59.721 52.381 0.00 0.00 0.00 3.91
505 516 1.279271 GGTAAGGTGTGAGGTGATGCT 59.721 52.381 0.00 0.00 0.00 3.79
506 517 2.622436 GTAAGGTGTGAGGTGATGCTC 58.378 52.381 0.00 0.00 0.00 4.26
507 518 0.326264 AAGGTGTGAGGTGATGCTCC 59.674 55.000 0.00 0.00 0.00 4.70
508 519 1.448540 GGTGTGAGGTGATGCTCCG 60.449 63.158 0.00 0.00 0.00 4.63
509 520 1.448540 GTGTGAGGTGATGCTCCGG 60.449 63.158 0.00 0.00 0.00 5.14
510 521 1.609210 TGTGAGGTGATGCTCCGGA 60.609 57.895 2.93 2.93 0.00 5.14
511 522 0.977627 TGTGAGGTGATGCTCCGGAT 60.978 55.000 3.57 0.00 0.00 4.18
512 523 0.249657 GTGAGGTGATGCTCCGGATC 60.250 60.000 3.57 0.00 0.00 3.36
513 524 1.369321 GAGGTGATGCTCCGGATCC 59.631 63.158 3.57 0.00 0.00 3.36
514 525 1.383109 AGGTGATGCTCCGGATCCA 60.383 57.895 13.41 5.93 0.00 3.41
515 526 0.982852 AGGTGATGCTCCGGATCCAA 60.983 55.000 13.41 0.00 0.00 3.53
516 527 0.107214 GGTGATGCTCCGGATCCAAA 60.107 55.000 13.41 0.00 0.00 3.28
517 528 1.681780 GGTGATGCTCCGGATCCAAAA 60.682 52.381 13.41 0.00 0.00 2.44
518 529 2.091541 GTGATGCTCCGGATCCAAAAA 58.908 47.619 13.41 0.00 0.00 1.94
519 530 2.689983 GTGATGCTCCGGATCCAAAAAT 59.310 45.455 13.41 0.00 0.00 1.82
520 531 3.882888 GTGATGCTCCGGATCCAAAAATA 59.117 43.478 13.41 0.00 0.00 1.40
521 532 4.520492 GTGATGCTCCGGATCCAAAAATAT 59.480 41.667 13.41 0.00 0.00 1.28
522 533 5.705441 GTGATGCTCCGGATCCAAAAATATA 59.295 40.000 13.41 0.00 0.00 0.86
523 534 6.375455 GTGATGCTCCGGATCCAAAAATATAT 59.625 38.462 13.41 0.00 0.00 0.86
524 535 6.375174 TGATGCTCCGGATCCAAAAATATATG 59.625 38.462 13.41 0.00 0.00 1.78
525 536 5.009631 TGCTCCGGATCCAAAAATATATGG 58.990 41.667 13.41 0.29 38.09 2.74
540 551 3.166434 TGGACGGCCACAAGGAAT 58.834 55.556 5.41 0.00 39.92 3.01
541 552 1.303236 TGGACGGCCACAAGGAATG 60.303 57.895 5.41 0.00 39.92 2.67
542 553 2.046285 GGACGGCCACAAGGAATGG 61.046 63.158 0.00 0.00 40.50 3.16
543 554 1.002624 GACGGCCACAAGGAATGGA 60.003 57.895 2.24 0.00 39.87 3.41
544 555 0.608035 GACGGCCACAAGGAATGGAA 60.608 55.000 2.24 0.00 39.87 3.53
545 556 0.893727 ACGGCCACAAGGAATGGAAC 60.894 55.000 2.24 0.00 39.87 3.62
546 557 0.893270 CGGCCACAAGGAATGGAACA 60.893 55.000 2.24 0.00 39.87 3.18
547 558 0.890683 GGCCACAAGGAATGGAACAG 59.109 55.000 0.00 0.00 38.90 3.16
548 559 1.547675 GGCCACAAGGAATGGAACAGA 60.548 52.381 0.00 0.00 38.90 3.41
549 560 2.450476 GCCACAAGGAATGGAACAGAT 58.550 47.619 0.00 0.00 38.90 2.90
550 561 3.620488 GCCACAAGGAATGGAACAGATA 58.380 45.455 0.00 0.00 38.90 1.98
551 562 3.629398 GCCACAAGGAATGGAACAGATAG 59.371 47.826 0.00 0.00 38.90 2.08
552 563 4.626287 GCCACAAGGAATGGAACAGATAGA 60.626 45.833 0.00 0.00 38.90 1.98
553 564 4.878397 CCACAAGGAATGGAACAGATAGAC 59.122 45.833 0.00 0.00 38.90 2.59
554 565 5.571454 CCACAAGGAATGGAACAGATAGACA 60.571 44.000 0.00 0.00 38.90 3.41
555 566 7.024262 CCACAAGGAATGGAACAGATAGACAA 61.024 42.308 0.00 0.00 38.90 3.18
556 567 8.752948 CCACAAGGAATGGAACAGATAGACAAG 61.753 44.444 0.00 0.00 38.90 3.16
562 573 5.078411 TGGAACAGATAGACAAGAGAAGC 57.922 43.478 0.00 0.00 0.00 3.86
563 574 4.774726 TGGAACAGATAGACAAGAGAAGCT 59.225 41.667 0.00 0.00 0.00 3.74
564 575 5.247110 TGGAACAGATAGACAAGAGAAGCTT 59.753 40.000 0.00 0.00 37.29 3.74
575 586 3.244033 AGAGAAGCTTGGACAAGATCG 57.756 47.619 15.76 0.00 40.79 3.69
576 587 1.663135 GAGAAGCTTGGACAAGATCGC 59.337 52.381 15.76 10.28 40.79 4.58
577 588 0.729690 GAAGCTTGGACAAGATCGCC 59.270 55.000 15.76 0.00 40.79 5.54
578 589 0.036732 AAGCTTGGACAAGATCGCCA 59.963 50.000 15.76 0.00 40.79 5.69
579 590 0.036732 AGCTTGGACAAGATCGCCAA 59.963 50.000 15.76 10.49 40.79 4.52
580 591 1.098050 GCTTGGACAAGATCGCCAAT 58.902 50.000 15.76 0.00 40.59 3.16
581 592 1.202222 GCTTGGACAAGATCGCCAATG 60.202 52.381 15.76 7.99 40.59 2.82
582 593 2.358957 CTTGGACAAGATCGCCAATGA 58.641 47.619 6.19 0.00 40.59 2.57
583 594 2.715749 TGGACAAGATCGCCAATGAT 57.284 45.000 0.00 0.00 0.00 2.45
584 595 2.291365 TGGACAAGATCGCCAATGATG 58.709 47.619 0.00 0.00 0.00 3.07
585 596 1.002033 GGACAAGATCGCCAATGATGC 60.002 52.381 0.00 0.00 0.00 3.91
586 597 1.002033 GACAAGATCGCCAATGATGCC 60.002 52.381 0.00 0.00 0.00 4.40
587 598 0.313043 CAAGATCGCCAATGATGCCC 59.687 55.000 0.00 0.00 0.00 5.36
588 599 0.184451 AAGATCGCCAATGATGCCCT 59.816 50.000 0.00 0.00 0.00 5.19
589 600 0.250640 AGATCGCCAATGATGCCCTC 60.251 55.000 0.00 0.00 0.00 4.30
590 601 1.228367 ATCGCCAATGATGCCCTCC 60.228 57.895 0.00 0.00 0.00 4.30
591 602 3.282157 CGCCAATGATGCCCTCCG 61.282 66.667 0.00 0.00 0.00 4.63
592 603 2.192979 GCCAATGATGCCCTCCGA 59.807 61.111 0.00 0.00 0.00 4.55
593 604 1.228367 GCCAATGATGCCCTCCGAT 60.228 57.895 0.00 0.00 0.00 4.18
594 605 1.239968 GCCAATGATGCCCTCCGATC 61.240 60.000 0.00 0.00 0.00 3.69
595 606 0.607489 CCAATGATGCCCTCCGATCC 60.607 60.000 0.00 0.00 0.00 3.36
596 607 0.399454 CAATGATGCCCTCCGATCCT 59.601 55.000 0.00 0.00 0.00 3.24
597 608 1.143813 AATGATGCCCTCCGATCCTT 58.856 50.000 0.00 0.00 0.00 3.36
598 609 2.030027 ATGATGCCCTCCGATCCTTA 57.970 50.000 0.00 0.00 0.00 2.69
599 610 1.048601 TGATGCCCTCCGATCCTTAC 58.951 55.000 0.00 0.00 0.00 2.34
600 611 1.048601 GATGCCCTCCGATCCTTACA 58.951 55.000 0.00 0.00 0.00 2.41
601 612 1.001406 GATGCCCTCCGATCCTTACAG 59.999 57.143 0.00 0.00 0.00 2.74
602 613 0.032515 TGCCCTCCGATCCTTACAGA 60.033 55.000 0.00 0.00 0.00 3.41
603 614 1.343069 GCCCTCCGATCCTTACAGAT 58.657 55.000 0.00 0.00 0.00 2.90
604 615 1.694696 GCCCTCCGATCCTTACAGATT 59.305 52.381 0.00 0.00 0.00 2.40
605 616 2.104963 GCCCTCCGATCCTTACAGATTT 59.895 50.000 0.00 0.00 0.00 2.17
606 617 3.433740 GCCCTCCGATCCTTACAGATTTT 60.434 47.826 0.00 0.00 0.00 1.82
607 618 4.781934 CCCTCCGATCCTTACAGATTTTT 58.218 43.478 0.00 0.00 0.00 1.94
630 641 7.485825 TTTTACGAATCAATAACGCAACATG 57.514 32.000 0.00 0.00 0.00 3.21
631 642 3.425404 ACGAATCAATAACGCAACATGC 58.575 40.909 0.00 0.00 40.69 4.06
632 643 2.783284 CGAATCAATAACGCAACATGCC 59.217 45.455 0.00 0.00 41.12 4.40
633 644 2.473530 ATCAATAACGCAACATGCCG 57.526 45.000 0.00 0.00 41.12 5.69
634 645 1.443802 TCAATAACGCAACATGCCGA 58.556 45.000 7.83 0.00 41.12 5.54
635 646 2.013400 TCAATAACGCAACATGCCGAT 58.987 42.857 7.83 0.00 41.12 4.18
636 647 2.031560 TCAATAACGCAACATGCCGATC 59.968 45.455 7.83 0.00 41.12 3.69
637 648 0.944386 ATAACGCAACATGCCGATCC 59.056 50.000 7.83 0.00 41.12 3.36
638 649 0.107897 TAACGCAACATGCCGATCCT 60.108 50.000 7.83 0.00 41.12 3.24
639 650 0.107897 AACGCAACATGCCGATCCTA 60.108 50.000 7.83 0.00 41.12 2.94
640 651 0.106708 ACGCAACATGCCGATCCTAT 59.893 50.000 7.83 0.00 41.12 2.57
641 652 0.792640 CGCAACATGCCGATCCTATC 59.207 55.000 0.00 0.00 41.12 2.08
658 669 8.433421 GATCCTATCGACCATAAACAAAGAAA 57.567 34.615 0.00 0.00 0.00 2.52
659 670 8.801882 ATCCTATCGACCATAAACAAAGAAAA 57.198 30.769 0.00 0.00 0.00 2.29
660 671 8.801882 TCCTATCGACCATAAACAAAGAAAAT 57.198 30.769 0.00 0.00 0.00 1.82
661 672 8.673711 TCCTATCGACCATAAACAAAGAAAATG 58.326 33.333 0.00 0.00 0.00 2.32
662 673 8.458843 CCTATCGACCATAAACAAAGAAAATGT 58.541 33.333 0.00 0.00 0.00 2.71
672 683 7.857734 AAACAAAGAAAATGTAAAACTGGGG 57.142 32.000 0.00 0.00 0.00 4.96
673 684 6.553953 ACAAAGAAAATGTAAAACTGGGGT 57.446 33.333 0.00 0.00 0.00 4.95
674 685 7.663043 ACAAAGAAAATGTAAAACTGGGGTA 57.337 32.000 0.00 0.00 0.00 3.69
675 686 8.080363 ACAAAGAAAATGTAAAACTGGGGTAA 57.920 30.769 0.00 0.00 0.00 2.85
676 687 8.541234 ACAAAGAAAATGTAAAACTGGGGTAAA 58.459 29.630 0.00 0.00 0.00 2.01
677 688 9.384764 CAAAGAAAATGTAAAACTGGGGTAAAA 57.615 29.630 0.00 0.00 0.00 1.52
678 689 8.951787 AAGAAAATGTAAAACTGGGGTAAAAC 57.048 30.769 0.00 0.00 0.00 2.43
679 690 7.502696 AGAAAATGTAAAACTGGGGTAAAACC 58.497 34.615 0.00 0.00 37.60 3.27
680 691 5.456548 AATGTAAAACTGGGGTAAAACCG 57.543 39.130 0.00 0.00 39.83 4.44
681 692 3.895998 TGTAAAACTGGGGTAAAACCGT 58.104 40.909 0.00 0.00 39.83 4.83
682 693 3.631227 TGTAAAACTGGGGTAAAACCGTG 59.369 43.478 0.00 0.00 39.83 4.94
683 694 2.440517 AAACTGGGGTAAAACCGTGT 57.559 45.000 0.00 0.00 39.83 4.49
684 695 2.440517 AACTGGGGTAAAACCGTGTT 57.559 45.000 0.00 0.00 39.83 3.32
685 696 3.574354 AACTGGGGTAAAACCGTGTTA 57.426 42.857 0.00 0.00 39.83 2.41
686 697 3.574354 ACTGGGGTAAAACCGTGTTAA 57.426 42.857 0.00 0.00 39.83 2.01
687 698 3.895998 ACTGGGGTAAAACCGTGTTAAA 58.104 40.909 0.00 0.00 39.83 1.52
688 699 4.276642 ACTGGGGTAAAACCGTGTTAAAA 58.723 39.130 0.00 0.00 39.83 1.52
689 700 4.338964 ACTGGGGTAAAACCGTGTTAAAAG 59.661 41.667 0.00 0.00 39.83 2.27
690 701 4.276642 TGGGGTAAAACCGTGTTAAAAGT 58.723 39.130 0.00 0.00 39.83 2.66
691 702 4.337836 TGGGGTAAAACCGTGTTAAAAGTC 59.662 41.667 0.00 0.00 39.83 3.01
692 703 4.580167 GGGGTAAAACCGTGTTAAAAGTCT 59.420 41.667 0.00 0.00 39.83 3.24
693 704 5.067674 GGGGTAAAACCGTGTTAAAAGTCTT 59.932 40.000 0.00 0.00 39.83 3.01
694 705 6.405731 GGGGTAAAACCGTGTTAAAAGTCTTT 60.406 38.462 0.00 0.00 39.83 2.52
695 706 7.201776 GGGGTAAAACCGTGTTAAAAGTCTTTA 60.202 37.037 0.00 0.00 39.83 1.85
696 707 8.187480 GGGTAAAACCGTGTTAAAAGTCTTTAA 58.813 33.333 0.00 0.00 39.83 1.52
697 708 9.566530 GGTAAAACCGTGTTAAAAGTCTTTAAA 57.433 29.630 0.00 0.00 38.43 1.52
702 713 9.511144 AACCGTGTTAAAAGTCTTTAAAATCTG 57.489 29.630 0.00 0.00 38.43 2.90
703 714 8.895737 ACCGTGTTAAAAGTCTTTAAAATCTGA 58.104 29.630 0.00 0.00 38.43 3.27
704 715 9.893305 CCGTGTTAAAAGTCTTTAAAATCTGAT 57.107 29.630 0.00 0.00 38.43 2.90
723 734 9.612620 AATCTGATATTTCGATAAAATTTCCGC 57.387 29.630 0.00 0.00 38.53 5.54
724 735 8.378172 TCTGATATTTCGATAAAATTTCCGCT 57.622 30.769 0.00 0.00 38.53 5.52
725 736 9.483916 TCTGATATTTCGATAAAATTTCCGCTA 57.516 29.630 0.00 0.00 38.53 4.26
730 741 7.979115 TTTCGATAAAATTTCCGCTAAATGG 57.021 32.000 0.00 0.00 37.85 3.16
731 742 6.067263 TCGATAAAATTTCCGCTAAATGGG 57.933 37.500 0.00 0.00 37.85 4.00
736 747 6.553953 AAAATTTCCGCTAAATGGGGTAAT 57.446 33.333 0.00 0.00 45.72 1.89
737 748 7.663043 AAAATTTCCGCTAAATGGGGTAATA 57.337 32.000 0.00 0.00 44.02 0.98
738 749 7.849322 AAATTTCCGCTAAATGGGGTAATAT 57.151 32.000 4.61 0.00 44.02 1.28
739 750 6.834168 ATTTCCGCTAAATGGGGTAATATG 57.166 37.500 0.00 0.00 43.37 1.78
740 751 6.311735 ATTTCCGCTAAATGGGGTAATATGT 58.688 36.000 0.00 0.00 43.37 2.29
741 752 6.208599 ATTTCCGCTAAATGGGGTAATATGTG 59.791 38.462 0.00 0.00 43.37 3.21
742 753 4.394729 CCGCTAAATGGGGTAATATGTGT 58.605 43.478 0.00 0.00 43.08 3.72
743 754 4.454504 CCGCTAAATGGGGTAATATGTGTC 59.545 45.833 0.00 0.00 43.08 3.67
744 755 5.060506 CGCTAAATGGGGTAATATGTGTCA 58.939 41.667 0.00 0.00 0.00 3.58
745 756 5.049680 CGCTAAATGGGGTAATATGTGTCAC 60.050 44.000 0.00 0.00 0.00 3.67
746 757 5.825679 GCTAAATGGGGTAATATGTGTCACA 59.174 40.000 8.40 8.40 0.00 3.58
747 758 6.320164 GCTAAATGGGGTAATATGTGTCACAA 59.680 38.462 10.28 0.06 0.00 3.33
748 759 7.147983 GCTAAATGGGGTAATATGTGTCACAAA 60.148 37.037 10.28 0.00 0.00 2.83
749 760 7.732222 AAATGGGGTAATATGTGTCACAAAT 57.268 32.000 10.28 1.91 0.00 2.32
750 761 6.713762 ATGGGGTAATATGTGTCACAAATG 57.286 37.500 10.28 0.00 0.00 2.32
751 762 5.575157 TGGGGTAATATGTGTCACAAATGT 58.425 37.500 10.28 0.00 0.00 2.71
752 763 6.722328 TGGGGTAATATGTGTCACAAATGTA 58.278 36.000 10.28 0.00 0.00 2.29
753 764 6.600032 TGGGGTAATATGTGTCACAAATGTAC 59.400 38.462 10.28 9.69 0.00 2.90
754 765 6.600032 GGGGTAATATGTGTCACAAATGTACA 59.400 38.462 10.28 0.00 0.00 2.90
755 766 7.121463 GGGGTAATATGTGTCACAAATGTACAA 59.879 37.037 10.28 0.00 31.29 2.41
756 767 7.966204 GGGTAATATGTGTCACAAATGTACAAC 59.034 37.037 10.28 0.00 31.29 3.32
757 768 8.726988 GGTAATATGTGTCACAAATGTACAACT 58.273 33.333 10.28 0.00 31.29 3.16
760 771 8.840833 ATATGTGTCACAAATGTACAACTACA 57.159 30.769 10.28 0.90 37.28 2.74
761 772 6.986904 TGTGTCACAAATGTACAACTACAA 57.013 33.333 2.31 0.00 36.43 2.41
762 773 7.010697 TGTGTCACAAATGTACAACTACAAG 57.989 36.000 2.31 0.00 36.43 3.16
763 774 6.037720 TGTGTCACAAATGTACAACTACAAGG 59.962 38.462 2.31 0.00 36.43 3.61
764 775 6.037830 GTGTCACAAATGTACAACTACAAGGT 59.962 38.462 0.00 0.00 36.43 3.50
765 776 7.225145 GTGTCACAAATGTACAACTACAAGGTA 59.775 37.037 0.00 0.00 36.43 3.08
766 777 7.769507 TGTCACAAATGTACAACTACAAGGTAA 59.230 33.333 0.00 0.00 36.43 2.85
767 778 8.614346 GTCACAAATGTACAACTACAAGGTAAA 58.386 33.333 0.00 0.00 36.43 2.01
768 779 9.175312 TCACAAATGTACAACTACAAGGTAAAA 57.825 29.630 0.00 0.00 36.43 1.52
769 780 9.790389 CACAAATGTACAACTACAAGGTAAAAA 57.210 29.630 0.00 0.00 36.43 1.94
773 784 7.556733 TGTACAACTACAAGGTAAAAAGTGG 57.443 36.000 0.00 0.00 29.36 4.00
774 785 7.337167 TGTACAACTACAAGGTAAAAAGTGGA 58.663 34.615 0.00 0.00 29.36 4.02
775 786 7.828223 TGTACAACTACAAGGTAAAAAGTGGAA 59.172 33.333 0.00 0.00 29.36 3.53
776 787 7.891498 ACAACTACAAGGTAAAAAGTGGAAT 57.109 32.000 0.00 0.00 0.00 3.01
777 788 8.301252 ACAACTACAAGGTAAAAAGTGGAATT 57.699 30.769 0.00 0.00 0.00 2.17
778 789 8.410912 ACAACTACAAGGTAAAAAGTGGAATTC 58.589 33.333 0.00 0.00 0.00 2.17
779 790 8.410141 CAACTACAAGGTAAAAAGTGGAATTCA 58.590 33.333 7.93 0.00 0.00 2.57
780 791 7.937649 ACTACAAGGTAAAAAGTGGAATTCAC 58.062 34.615 7.93 4.02 46.39 3.18
824 835 4.287067 ACAGTGGACAGTGGTTATCTGAAT 59.713 41.667 11.47 0.00 36.10 2.57
883 902 7.338196 TGGGTTGTCATAGGTTGTAACATAATG 59.662 37.037 0.00 0.00 0.00 1.90
944 963 9.920133 GACATCTTCTGTGCTAATTATATCTCA 57.080 33.333 0.00 0.00 38.54 3.27
1144 1163 6.873076 TCAGGTAAATGTGCAAATTTTCATCC 59.127 34.615 19.73 15.66 32.16 3.51
1356 1377 9.935241 TCATAGATATACCTGCTGATCTTTTTC 57.065 33.333 0.00 0.00 31.25 2.29
1461 1756 5.534654 CCTTAAGTTGTCACCAAATCCTTCA 59.465 40.000 0.97 0.00 30.94 3.02
1725 2025 3.134804 AGATATGTCACCTGTGGCCTAAC 59.865 47.826 3.32 0.00 33.48 2.34
1890 2190 2.698797 GGTTCATAGGACCGAGGATTCA 59.301 50.000 0.00 0.00 0.00 2.57
1943 2243 1.244019 AATGTGTGCCGCTCCCTTTC 61.244 55.000 0.00 0.00 0.00 2.62
1980 2280 9.727627 CTTGAAAAGCTCCTCATAAATAACATC 57.272 33.333 0.00 0.00 36.98 3.06
1981 2281 9.466497 TTGAAAAGCTCCTCATAAATAACATCT 57.534 29.630 0.00 0.00 0.00 2.90
1987 2287 7.657761 AGCTCCTCATAAATAACATCTAAACCG 59.342 37.037 0.00 0.00 0.00 4.44
2179 2480 8.305317 GGACTAGTTTAAGTCACACTATCAGTT 58.695 37.037 0.00 0.00 46.40 3.16
2195 2496 7.704472 CACTATCAGTTAGGTTCAGATTCAGTC 59.296 40.741 0.00 0.00 31.68 3.51
2227 2530 3.243643 GTGCTGCATGAAACACAAAAGAC 59.756 43.478 5.27 0.00 33.23 3.01
2235 2538 2.131776 AACACAAAAGACAACGGGGA 57.868 45.000 0.00 0.00 0.00 4.81
2236 2539 2.358322 ACACAAAAGACAACGGGGAT 57.642 45.000 0.00 0.00 0.00 3.85
2264 2598 3.257127 AGGAGTAGAACTTCAGCAGTGAC 59.743 47.826 0.00 0.00 35.12 3.67
2284 2618 3.744660 ACTCTAACTTGCCAGGAAAGTG 58.255 45.455 14.32 3.71 37.90 3.16
2349 2684 5.760253 ACTCGGATACTATTTTGCAAGGATG 59.240 40.000 0.00 0.00 0.00 3.51
2350 2685 5.680619 TCGGATACTATTTTGCAAGGATGT 58.319 37.500 0.00 1.04 0.00 3.06
2351 2686 6.822442 TCGGATACTATTTTGCAAGGATGTA 58.178 36.000 0.00 3.32 0.00 2.29
2454 2840 9.411801 GTTTCTCCATAGTGAAAAGGAAAATTC 57.588 33.333 0.00 0.00 37.26 2.17
2455 2841 8.704849 TTCTCCATAGTGAAAAGGAAAATTCA 57.295 30.769 0.00 0.00 33.37 2.57
2464 2850 5.982516 TGAAAAGGAAAATTCATGGACAACG 59.017 36.000 0.00 0.00 30.94 4.10
2484 2870 2.416547 CGTGATGCCTCTTGGTTAACAG 59.583 50.000 8.10 0.00 35.27 3.16
2574 2966 6.306987 AGTGGGAGAAGAAAGAAAATGCTAA 58.693 36.000 0.00 0.00 0.00 3.09
2623 3015 4.159244 ACAAGTTGTAGTTGTAGGGCAA 57.841 40.909 6.75 0.00 39.77 4.52
2760 3152 3.518998 GAGGCCGACGAGCAGCTA 61.519 66.667 0.00 0.00 0.00 3.32
3121 3513 2.436646 AGGCCGCTGTCGATTTGG 60.437 61.111 0.00 0.00 38.10 3.28
3122 3514 3.508840 GGCCGCTGTCGATTTGGG 61.509 66.667 0.00 0.00 38.10 4.12
3123 3515 2.435938 GCCGCTGTCGATTTGGGA 60.436 61.111 0.00 0.00 38.10 4.37
3124 3516 2.038269 GCCGCTGTCGATTTGGGAA 61.038 57.895 0.00 0.00 38.10 3.97
3151 3543 2.652941 TCATTTGGCGCCAAGATTTC 57.347 45.000 37.88 5.44 37.24 2.17
3152 3544 2.170166 TCATTTGGCGCCAAGATTTCT 58.830 42.857 37.88 18.62 37.24 2.52
3153 3545 2.562298 TCATTTGGCGCCAAGATTTCTT 59.438 40.909 37.88 17.15 37.24 2.52
3154 3546 3.006752 TCATTTGGCGCCAAGATTTCTTT 59.993 39.130 37.88 15.87 37.24 2.52
3155 3547 3.467374 TTTGGCGCCAAGATTTCTTTT 57.533 38.095 37.88 0.00 37.24 2.27
3407 3799 2.508663 GCTCTACACCGGCGGAAC 60.509 66.667 35.78 9.29 0.00 3.62
3996 4388 4.576053 TCAAGTTTTATGCGATGATCCCTG 59.424 41.667 0.00 0.00 0.00 4.45
4193 4585 1.795286 CGTTGAGCAGGAGAGAACAAC 59.205 52.381 0.00 0.00 35.70 3.32
4374 4766 3.512516 GAGGCGGCTGCAATGACC 61.513 66.667 19.63 0.00 45.35 4.02
4424 4816 4.475135 GAGGAAGGGCAGGACGGC 62.475 72.222 0.00 0.00 40.20 5.68
4504 4896 3.918566 AGAATTGATGGCCATGGATGAA 58.081 40.909 26.56 8.03 0.00 2.57
4576 4968 0.457035 GTTGGCATGCATACCTGTGG 59.543 55.000 21.36 0.00 0.00 4.17
4643 5036 1.071314 TTTGGTGGGAGATGTGGGGT 61.071 55.000 0.00 0.00 0.00 4.95
4644 5037 1.788518 TTGGTGGGAGATGTGGGGTG 61.789 60.000 0.00 0.00 0.00 4.61
4737 5131 9.988815 GTGGCTATAATCATATACAATCTAGGG 57.011 37.037 0.00 0.00 0.00 3.53
4771 5165 5.893897 ATCAAAGCTGTCCTTCATTCTTC 57.106 39.130 0.00 0.00 31.99 2.87
4786 5180 8.514594 CCTTCATTCTTCAACTGCATTTAGTTA 58.485 33.333 0.00 0.00 38.78 2.24
4808 5202 9.107177 AGTTATGAGATGTTCAATTGATCTGAC 57.893 33.333 13.49 7.73 39.77 3.51
4919 5313 1.816863 TTCAGGACGCCTCTGTGACC 61.817 60.000 0.00 0.00 37.12 4.02
4941 5344 4.962836 GCCCCTGCCATCCATCCG 62.963 72.222 0.00 0.00 0.00 4.18
5086 5489 7.939039 TCAGTTGAAAATACAGAGTGGAGAAAT 59.061 33.333 0.00 0.00 0.00 2.17
5101 5544 1.683917 AGAAATAGATGCTCCGCGAGT 59.316 47.619 8.23 0.00 31.39 4.18
5198 5643 2.027561 TGCAAGATACTACTGCGGGTTT 60.028 45.455 0.00 0.00 0.00 3.27
5202 5647 5.172934 CAAGATACTACTGCGGGTTTTGTA 58.827 41.667 0.00 0.00 0.00 2.41
5382 5827 2.224305 ACAGACAACTACAGCTCAACCC 60.224 50.000 0.00 0.00 0.00 4.11
5386 5831 0.034896 AACTACAGCTCAACCCACGG 59.965 55.000 0.00 0.00 0.00 4.94
5389 5834 1.764571 TACAGCTCAACCCACGGCTT 61.765 55.000 0.00 0.00 32.30 4.35
5453 5898 0.750546 AGTAGCCGTCATGCCGTCTA 60.751 55.000 0.00 0.00 0.00 2.59
5466 5911 0.866061 CCGTCTACGCTGATGGTTCG 60.866 60.000 7.99 0.00 38.10 3.95
5539 5984 4.562757 CGAGGAATTTGGACTACTCACCAA 60.563 45.833 0.00 0.00 43.22 3.67
5542 5987 4.695928 GGAATTTGGACTACTCACCAAGTC 59.304 45.833 0.00 0.00 45.08 3.01
5549 5994 4.039366 GGACTACTCACCAAGTCTGTCTTT 59.961 45.833 2.82 0.00 41.53 2.52
5559 6004 6.202954 CACCAAGTCTGTCTTTCGTAAAATCT 59.797 38.462 0.00 0.00 33.63 2.40
5593 6038 7.489435 TCTTTTCAGATACTCGCATTTCTACTG 59.511 37.037 0.00 0.00 0.00 2.74
5659 6104 6.374894 TGAAATTAATTTGTCGGTTCGGGTAT 59.625 34.615 17.98 0.00 0.00 2.73
5699 6144 5.001232 TGACCGATTAAAGGTTTCTCCAAG 58.999 41.667 7.33 0.00 43.01 3.61
5719 6164 0.814010 GCGTATTAGCACCCCACCAG 60.814 60.000 0.00 0.00 37.05 4.00
5720 6165 0.828022 CGTATTAGCACCCCACCAGA 59.172 55.000 0.00 0.00 0.00 3.86
5721 6166 1.472728 CGTATTAGCACCCCACCAGAC 60.473 57.143 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.272574 TCTTTCTTGATAGCAGCCTGG 57.727 47.619 0.00 0.00 0.00 4.45
1 2 4.005650 TGTTCTTTCTTGATAGCAGCCTG 58.994 43.478 0.00 0.00 0.00 4.85
2 3 4.006319 GTGTTCTTTCTTGATAGCAGCCT 58.994 43.478 0.00 0.00 0.00 4.58
3 4 3.181516 CGTGTTCTTTCTTGATAGCAGCC 60.182 47.826 0.00 0.00 0.00 4.85
25 26 1.877637 TCCACTATGTGTGTGTGTGC 58.122 50.000 0.00 0.00 44.81 4.57
35 36 2.912956 AGGACCACACATTCCACTATGT 59.087 45.455 0.00 0.00 39.27 2.29
36 37 3.055167 TCAGGACCACACATTCCACTATG 60.055 47.826 0.00 0.00 33.92 2.23
37 38 3.181329 TCAGGACCACACATTCCACTAT 58.819 45.455 0.00 0.00 33.92 2.12
38 39 2.615391 TCAGGACCACACATTCCACTA 58.385 47.619 0.00 0.00 33.92 2.74
125 136 3.896888 TCATGGAAAAATGTGGCTCTTGT 59.103 39.130 0.00 0.00 0.00 3.16
206 217 5.010282 AGTGGATGTAAACCTTGATGAACC 58.990 41.667 0.00 0.00 0.00 3.62
279 290 4.387026 ACAGATGGAGGTCAATGGAAAA 57.613 40.909 0.00 0.00 0.00 2.29
291 302 5.695851 AAGTAAACAAGCAACAGATGGAG 57.304 39.130 0.00 0.00 0.00 3.86
343 354 9.010029 GGAATTCACTCTTTTCATAACCTTGTA 57.990 33.333 7.93 0.00 0.00 2.41
361 372 5.738619 ATGGGGTAAAAAGTGGAATTCAC 57.261 39.130 7.93 4.02 46.39 3.18
362 373 8.317679 CAAATATGGGGTAAAAAGTGGAATTCA 58.682 33.333 7.93 0.00 0.00 2.57
363 374 8.318412 ACAAATATGGGGTAAAAAGTGGAATTC 58.682 33.333 0.00 0.00 0.00 2.17
364 375 8.213489 ACAAATATGGGGTAAAAAGTGGAATT 57.787 30.769 0.00 0.00 0.00 2.17
365 376 7.806680 ACAAATATGGGGTAAAAAGTGGAAT 57.193 32.000 0.00 0.00 0.00 3.01
366 377 7.728981 TGTACAAATATGGGGTAAAAAGTGGAA 59.271 33.333 0.00 0.00 0.00 3.53
367 378 7.239438 TGTACAAATATGGGGTAAAAAGTGGA 58.761 34.615 0.00 0.00 0.00 4.02
368 379 7.469537 TGTACAAATATGGGGTAAAAAGTGG 57.530 36.000 0.00 0.00 0.00 4.00
369 380 9.936759 AAATGTACAAATATGGGGTAAAAAGTG 57.063 29.630 0.00 0.00 0.00 3.16
370 381 9.936759 CAAATGTACAAATATGGGGTAAAAAGT 57.063 29.630 0.00 0.00 0.00 2.66
371 382 9.936759 ACAAATGTACAAATATGGGGTAAAAAG 57.063 29.630 0.00 0.00 0.00 2.27
372 383 9.712305 CACAAATGTACAAATATGGGGTAAAAA 57.288 29.630 0.00 0.00 0.00 1.94
373 384 9.090103 TCACAAATGTACAAATATGGGGTAAAA 57.910 29.630 0.00 0.00 0.00 1.52
374 385 8.524487 GTCACAAATGTACAAATATGGGGTAAA 58.476 33.333 0.00 0.00 0.00 2.01
375 386 7.670140 TGTCACAAATGTACAAATATGGGGTAA 59.330 33.333 0.00 0.00 0.00 2.85
376 387 7.121463 GTGTCACAAATGTACAAATATGGGGTA 59.879 37.037 0.00 0.00 0.00 3.69
377 388 6.013379 TGTCACAAATGTACAAATATGGGGT 58.987 36.000 0.00 0.00 0.00 4.95
378 389 6.152661 AGTGTCACAAATGTACAAATATGGGG 59.847 38.462 5.62 0.00 0.00 4.96
379 390 7.156876 AGTGTCACAAATGTACAAATATGGG 57.843 36.000 5.62 0.00 0.00 4.00
385 396 8.569641 GGGTAATTAGTGTCACAAATGTACAAA 58.430 33.333 5.62 0.00 0.00 2.83
386 397 7.175293 GGGGTAATTAGTGTCACAAATGTACAA 59.825 37.037 5.62 0.00 0.00 2.41
387 398 6.655848 GGGGTAATTAGTGTCACAAATGTACA 59.344 38.462 5.62 0.00 0.00 2.90
388 399 6.183360 CGGGGTAATTAGTGTCACAAATGTAC 60.183 42.308 5.62 1.23 0.00 2.90
389 400 5.875910 CGGGGTAATTAGTGTCACAAATGTA 59.124 40.000 5.62 0.00 0.00 2.29
390 401 4.698304 CGGGGTAATTAGTGTCACAAATGT 59.302 41.667 5.62 0.00 0.00 2.71
391 402 4.698304 ACGGGGTAATTAGTGTCACAAATG 59.302 41.667 5.62 0.00 0.00 2.32
392 403 4.913784 ACGGGGTAATTAGTGTCACAAAT 58.086 39.130 5.62 0.00 0.00 2.32
393 404 4.317488 GACGGGGTAATTAGTGTCACAAA 58.683 43.478 5.62 0.00 0.00 2.83
394 405 3.614630 CGACGGGGTAATTAGTGTCACAA 60.615 47.826 5.62 0.00 0.00 3.33
395 406 2.094597 CGACGGGGTAATTAGTGTCACA 60.095 50.000 5.62 0.00 0.00 3.58
396 407 2.164219 TCGACGGGGTAATTAGTGTCAC 59.836 50.000 0.00 0.00 0.00 3.67
397 408 2.424601 CTCGACGGGGTAATTAGTGTCA 59.575 50.000 0.00 0.00 0.00 3.58
398 409 2.424956 ACTCGACGGGGTAATTAGTGTC 59.575 50.000 0.00 0.00 0.00 3.67
399 410 2.165030 CACTCGACGGGGTAATTAGTGT 59.835 50.000 0.00 0.00 0.00 3.55
400 411 2.424601 TCACTCGACGGGGTAATTAGTG 59.575 50.000 0.00 1.05 35.36 2.74
401 412 2.726821 TCACTCGACGGGGTAATTAGT 58.273 47.619 0.00 0.00 0.00 2.24
402 413 3.788333 TTCACTCGACGGGGTAATTAG 57.212 47.619 0.00 0.00 0.00 1.73
403 414 4.533919 TTTTCACTCGACGGGGTAATTA 57.466 40.909 0.00 0.00 0.00 1.40
404 415 3.405823 TTTTCACTCGACGGGGTAATT 57.594 42.857 0.00 0.00 0.00 1.40
405 416 3.622166 ATTTTCACTCGACGGGGTAAT 57.378 42.857 0.00 0.00 0.00 1.89
406 417 3.328505 GAATTTTCACTCGACGGGGTAA 58.671 45.455 0.00 0.00 0.00 2.85
407 418 2.671914 CGAATTTTCACTCGACGGGGTA 60.672 50.000 0.00 0.00 37.23 3.69
408 419 1.804601 GAATTTTCACTCGACGGGGT 58.195 50.000 0.00 0.00 0.00 4.95
409 420 0.719465 CGAATTTTCACTCGACGGGG 59.281 55.000 0.00 0.00 37.23 5.73
410 421 1.389106 GACGAATTTTCACTCGACGGG 59.611 52.381 0.00 0.00 38.43 5.28
411 422 2.325761 AGACGAATTTTCACTCGACGG 58.674 47.619 0.00 0.00 38.43 4.79
412 423 4.400845 TCTAGACGAATTTTCACTCGACG 58.599 43.478 0.00 0.00 38.43 5.12
413 424 6.872670 ATTCTAGACGAATTTTCACTCGAC 57.127 37.500 0.00 0.00 39.28 4.20
414 425 6.971184 GGTATTCTAGACGAATTTTCACTCGA 59.029 38.462 0.00 0.00 42.26 4.04
415 426 6.198591 GGGTATTCTAGACGAATTTTCACTCG 59.801 42.308 0.00 0.00 42.26 4.18
416 427 6.479331 GGGGTATTCTAGACGAATTTTCACTC 59.521 42.308 0.00 0.00 42.26 3.51
417 428 6.156429 AGGGGTATTCTAGACGAATTTTCACT 59.844 38.462 0.00 0.00 42.26 3.41
418 429 6.346896 AGGGGTATTCTAGACGAATTTTCAC 58.653 40.000 0.00 0.00 42.26 3.18
419 430 6.555463 AGGGGTATTCTAGACGAATTTTCA 57.445 37.500 0.00 0.00 42.26 2.69
420 431 7.860918 AAAGGGGTATTCTAGACGAATTTTC 57.139 36.000 0.00 0.00 42.26 2.29
421 432 7.886446 TCAAAAGGGGTATTCTAGACGAATTTT 59.114 33.333 0.00 0.00 42.26 1.82
422 433 7.399634 TCAAAAGGGGTATTCTAGACGAATTT 58.600 34.615 0.00 0.00 42.26 1.82
423 434 6.954232 TCAAAAGGGGTATTCTAGACGAATT 58.046 36.000 0.00 0.00 42.26 2.17
424 435 6.555463 TCAAAAGGGGTATTCTAGACGAAT 57.445 37.500 0.00 0.00 44.35 3.34
425 436 6.363167 TTCAAAAGGGGTATTCTAGACGAA 57.637 37.500 0.00 0.00 35.78 3.85
426 437 6.363167 TTTCAAAAGGGGTATTCTAGACGA 57.637 37.500 0.00 0.00 0.00 4.20
427 438 5.064834 GCTTTCAAAAGGGGTATTCTAGACG 59.935 44.000 4.76 0.00 36.53 4.18
428 439 6.181190 AGCTTTCAAAAGGGGTATTCTAGAC 58.819 40.000 4.76 0.00 36.53 2.59
429 440 6.388619 AGCTTTCAAAAGGGGTATTCTAGA 57.611 37.500 4.76 0.00 36.53 2.43
430 441 7.315890 CAAAGCTTTCAAAAGGGGTATTCTAG 58.684 38.462 9.23 0.00 36.53 2.43
431 442 6.210584 CCAAAGCTTTCAAAAGGGGTATTCTA 59.789 38.462 9.23 0.00 36.53 2.10
432 443 5.012046 CCAAAGCTTTCAAAAGGGGTATTCT 59.988 40.000 9.23 0.00 36.53 2.40
433 444 5.011635 TCCAAAGCTTTCAAAAGGGGTATTC 59.988 40.000 9.23 0.00 36.53 1.75
434 445 4.904853 TCCAAAGCTTTCAAAAGGGGTATT 59.095 37.500 9.23 0.00 36.53 1.89
435 446 4.283467 GTCCAAAGCTTTCAAAAGGGGTAT 59.717 41.667 9.23 0.00 36.53 2.73
436 447 3.639561 GTCCAAAGCTTTCAAAAGGGGTA 59.360 43.478 9.23 0.00 36.53 3.69
437 448 2.434336 GTCCAAAGCTTTCAAAAGGGGT 59.566 45.455 9.23 0.00 36.53 4.95
438 449 2.700371 AGTCCAAAGCTTTCAAAAGGGG 59.300 45.455 9.23 5.92 36.53 4.79
439 450 3.638627 AGAGTCCAAAGCTTTCAAAAGGG 59.361 43.478 9.23 6.69 36.53 3.95
440 451 4.555511 CGAGAGTCCAAAGCTTTCAAAAGG 60.556 45.833 9.23 7.46 36.53 3.11
441 452 4.035675 ACGAGAGTCCAAAGCTTTCAAAAG 59.964 41.667 9.23 0.00 44.19 2.27
442 453 3.945285 ACGAGAGTCCAAAGCTTTCAAAA 59.055 39.130 9.23 0.00 44.19 2.44
443 454 3.541632 ACGAGAGTCCAAAGCTTTCAAA 58.458 40.909 9.23 0.00 44.19 2.69
444 455 3.194005 ACGAGAGTCCAAAGCTTTCAA 57.806 42.857 9.23 0.00 44.19 2.69
445 456 2.910688 ACGAGAGTCCAAAGCTTTCA 57.089 45.000 9.23 0.00 44.19 2.69
458 469 2.061773 ACACGCATCAGAAAACGAGAG 58.938 47.619 0.00 0.00 0.00 3.20
459 470 2.058798 GACACGCATCAGAAAACGAGA 58.941 47.619 0.00 0.00 0.00 4.04
460 471 1.126846 GGACACGCATCAGAAAACGAG 59.873 52.381 0.00 0.00 0.00 4.18
461 472 1.144969 GGACACGCATCAGAAAACGA 58.855 50.000 0.00 0.00 0.00 3.85
462 473 0.865111 TGGACACGCATCAGAAAACG 59.135 50.000 0.00 0.00 0.00 3.60
463 474 2.483877 TGATGGACACGCATCAGAAAAC 59.516 45.455 0.00 0.00 33.41 2.43
464 475 2.777094 TGATGGACACGCATCAGAAAA 58.223 42.857 0.00 0.00 33.41 2.29
465 476 2.470983 TGATGGACACGCATCAGAAA 57.529 45.000 0.00 0.00 33.41 2.52
469 480 1.190643 TACCTGATGGACACGCATCA 58.809 50.000 0.00 0.00 36.52 3.07
470 481 2.205074 CTTACCTGATGGACACGCATC 58.795 52.381 0.00 0.00 37.04 3.91
471 482 1.134401 CCTTACCTGATGGACACGCAT 60.134 52.381 0.00 0.00 37.04 4.73
472 483 0.249120 CCTTACCTGATGGACACGCA 59.751 55.000 0.00 0.00 37.04 5.24
473 484 0.249398 ACCTTACCTGATGGACACGC 59.751 55.000 0.00 0.00 37.04 5.34
474 485 1.275291 ACACCTTACCTGATGGACACG 59.725 52.381 0.00 0.00 37.04 4.49
475 486 2.301870 TCACACCTTACCTGATGGACAC 59.698 50.000 0.00 0.00 37.04 3.67
476 487 2.567169 CTCACACCTTACCTGATGGACA 59.433 50.000 0.00 0.00 37.04 4.02
477 488 2.093447 CCTCACACCTTACCTGATGGAC 60.093 54.545 0.00 0.00 37.04 4.02
478 489 2.187958 CCTCACACCTTACCTGATGGA 58.812 52.381 0.00 0.00 37.04 3.41
479 490 1.909302 ACCTCACACCTTACCTGATGG 59.091 52.381 0.00 0.00 39.83 3.51
480 491 2.567169 TCACCTCACACCTTACCTGATG 59.433 50.000 0.00 0.00 0.00 3.07
481 492 2.902608 TCACCTCACACCTTACCTGAT 58.097 47.619 0.00 0.00 0.00 2.90
482 493 2.391926 TCACCTCACACCTTACCTGA 57.608 50.000 0.00 0.00 0.00 3.86
483 494 2.936993 GCATCACCTCACACCTTACCTG 60.937 54.545 0.00 0.00 0.00 4.00
484 495 1.279271 GCATCACCTCACACCTTACCT 59.721 52.381 0.00 0.00 0.00 3.08
485 496 1.279271 AGCATCACCTCACACCTTACC 59.721 52.381 0.00 0.00 0.00 2.85
486 497 2.622436 GAGCATCACCTCACACCTTAC 58.378 52.381 0.00 0.00 33.17 2.34
487 498 1.555075 GGAGCATCACCTCACACCTTA 59.445 52.381 0.00 0.00 36.25 2.69
488 499 0.326264 GGAGCATCACCTCACACCTT 59.674 55.000 0.00 0.00 36.25 3.50
489 500 1.892819 CGGAGCATCACCTCACACCT 61.893 60.000 0.00 0.00 36.25 4.00
490 501 1.448540 CGGAGCATCACCTCACACC 60.449 63.158 0.00 0.00 36.25 4.16
491 502 1.448540 CCGGAGCATCACCTCACAC 60.449 63.158 0.00 0.00 36.25 3.82
492 503 0.977627 ATCCGGAGCATCACCTCACA 60.978 55.000 11.34 0.00 36.25 3.58
493 504 0.249657 GATCCGGAGCATCACCTCAC 60.250 60.000 16.44 0.00 36.25 3.51
494 505 1.402896 GGATCCGGAGCATCACCTCA 61.403 60.000 23.22 0.00 36.25 3.86
495 506 1.369321 GGATCCGGAGCATCACCTC 59.631 63.158 23.22 5.38 36.25 3.85
496 507 0.982852 TTGGATCCGGAGCATCACCT 60.983 55.000 23.22 0.00 36.25 4.00
497 508 0.107214 TTTGGATCCGGAGCATCACC 60.107 55.000 23.22 12.03 36.25 4.02
498 509 1.750193 TTTTGGATCCGGAGCATCAC 58.250 50.000 23.22 4.20 36.25 3.06
499 510 2.505650 TTTTTGGATCCGGAGCATCA 57.494 45.000 23.22 8.44 36.25 3.07
500 511 6.183360 CCATATATTTTTGGATCCGGAGCATC 60.183 42.308 23.22 8.67 34.81 3.91
501 512 5.653769 CCATATATTTTTGGATCCGGAGCAT 59.346 40.000 23.22 8.42 34.81 3.79
502 513 5.009631 CCATATATTTTTGGATCCGGAGCA 58.990 41.667 23.22 4.78 34.81 4.26
503 514 5.123979 GTCCATATATTTTTGGATCCGGAGC 59.876 44.000 12.38 12.38 43.61 4.70
504 515 5.351465 CGTCCATATATTTTTGGATCCGGAG 59.649 44.000 11.34 0.00 43.61 4.63
505 516 5.242434 CGTCCATATATTTTTGGATCCGGA 58.758 41.667 6.61 6.61 43.61 5.14
506 517 4.394920 CCGTCCATATATTTTTGGATCCGG 59.605 45.833 7.39 0.00 43.61 5.14
507 518 4.142687 GCCGTCCATATATTTTTGGATCCG 60.143 45.833 7.39 0.23 43.61 4.18
508 519 4.157840 GGCCGTCCATATATTTTTGGATCC 59.842 45.833 4.20 4.20 43.61 3.36
509 520 4.764823 TGGCCGTCCATATATTTTTGGATC 59.235 41.667 0.00 0.00 43.61 3.36
510 521 4.522789 GTGGCCGTCCATATATTTTTGGAT 59.477 41.667 0.00 0.00 45.62 3.41
511 522 3.886505 GTGGCCGTCCATATATTTTTGGA 59.113 43.478 0.00 0.00 45.62 3.53
512 523 3.634448 TGTGGCCGTCCATATATTTTTGG 59.366 43.478 0.00 0.00 45.62 3.28
513 524 4.909696 TGTGGCCGTCCATATATTTTTG 57.090 40.909 0.00 0.00 45.62 2.44
514 525 4.340950 CCTTGTGGCCGTCCATATATTTTT 59.659 41.667 0.00 0.00 45.62 1.94
515 526 3.888930 CCTTGTGGCCGTCCATATATTTT 59.111 43.478 0.00 0.00 45.62 1.82
516 527 3.137544 TCCTTGTGGCCGTCCATATATTT 59.862 43.478 0.00 0.00 45.62 1.40
517 528 2.708861 TCCTTGTGGCCGTCCATATATT 59.291 45.455 0.00 0.00 45.62 1.28
518 529 2.334977 TCCTTGTGGCCGTCCATATAT 58.665 47.619 0.00 0.00 45.62 0.86
519 530 1.796017 TCCTTGTGGCCGTCCATATA 58.204 50.000 0.00 0.00 45.62 0.86
520 531 0.916086 TTCCTTGTGGCCGTCCATAT 59.084 50.000 0.00 0.00 45.62 1.78
521 532 0.916086 ATTCCTTGTGGCCGTCCATA 59.084 50.000 0.00 0.00 45.62 2.74
522 533 0.680921 CATTCCTTGTGGCCGTCCAT 60.681 55.000 0.00 0.00 45.62 3.41
523 534 1.303236 CATTCCTTGTGGCCGTCCA 60.303 57.895 0.00 0.00 40.85 4.02
524 535 2.046285 CCATTCCTTGTGGCCGTCC 61.046 63.158 0.00 0.00 0.00 4.79
525 536 0.608035 TTCCATTCCTTGTGGCCGTC 60.608 55.000 0.00 0.00 36.66 4.79
526 537 0.893727 GTTCCATTCCTTGTGGCCGT 60.894 55.000 0.00 0.00 36.66 5.68
527 538 0.893270 TGTTCCATTCCTTGTGGCCG 60.893 55.000 0.00 0.00 36.66 6.13
528 539 0.890683 CTGTTCCATTCCTTGTGGCC 59.109 55.000 0.00 0.00 36.66 5.36
529 540 1.909700 TCTGTTCCATTCCTTGTGGC 58.090 50.000 0.00 0.00 36.66 5.01
530 541 4.878397 GTCTATCTGTTCCATTCCTTGTGG 59.122 45.833 0.00 0.00 38.11 4.17
531 542 5.491070 TGTCTATCTGTTCCATTCCTTGTG 58.509 41.667 0.00 0.00 0.00 3.33
532 543 5.762179 TGTCTATCTGTTCCATTCCTTGT 57.238 39.130 0.00 0.00 0.00 3.16
533 544 6.409704 TCTTGTCTATCTGTTCCATTCCTTG 58.590 40.000 0.00 0.00 0.00 3.61
534 545 6.441924 TCTCTTGTCTATCTGTTCCATTCCTT 59.558 38.462 0.00 0.00 0.00 3.36
535 546 5.960811 TCTCTTGTCTATCTGTTCCATTCCT 59.039 40.000 0.00 0.00 0.00 3.36
536 547 6.227298 TCTCTTGTCTATCTGTTCCATTCC 57.773 41.667 0.00 0.00 0.00 3.01
537 548 6.257630 GCTTCTCTTGTCTATCTGTTCCATTC 59.742 42.308 0.00 0.00 0.00 2.67
538 549 6.070309 AGCTTCTCTTGTCTATCTGTTCCATT 60.070 38.462 0.00 0.00 0.00 3.16
539 550 5.424895 AGCTTCTCTTGTCTATCTGTTCCAT 59.575 40.000 0.00 0.00 0.00 3.41
540 551 4.774726 AGCTTCTCTTGTCTATCTGTTCCA 59.225 41.667 0.00 0.00 0.00 3.53
541 552 5.337578 AGCTTCTCTTGTCTATCTGTTCC 57.662 43.478 0.00 0.00 0.00 3.62
542 553 6.645700 CAAGCTTCTCTTGTCTATCTGTTC 57.354 41.667 0.00 0.00 45.48 3.18
554 565 3.594134 CGATCTTGTCCAAGCTTCTCTT 58.406 45.455 0.00 0.00 38.28 2.85
555 566 2.676463 GCGATCTTGTCCAAGCTTCTCT 60.676 50.000 0.00 0.00 38.28 3.10
556 567 1.663135 GCGATCTTGTCCAAGCTTCTC 59.337 52.381 0.00 0.00 38.28 2.87
557 568 1.677217 GGCGATCTTGTCCAAGCTTCT 60.677 52.381 0.00 0.00 38.28 2.85
558 569 0.729690 GGCGATCTTGTCCAAGCTTC 59.270 55.000 0.00 1.93 38.28 3.86
559 570 0.036732 TGGCGATCTTGTCCAAGCTT 59.963 50.000 0.00 0.00 38.28 3.74
560 571 0.036732 TTGGCGATCTTGTCCAAGCT 59.963 50.000 2.09 0.00 38.28 3.74
561 572 1.098050 ATTGGCGATCTTGTCCAAGC 58.902 50.000 2.09 0.00 42.43 4.01
562 573 2.358957 TCATTGGCGATCTTGTCCAAG 58.641 47.619 0.47 0.47 42.43 3.61
563 574 2.488204 TCATTGGCGATCTTGTCCAA 57.512 45.000 7.67 7.67 43.20 3.53
564 575 2.291365 CATCATTGGCGATCTTGTCCA 58.709 47.619 0.00 0.00 0.00 4.02
565 576 1.002033 GCATCATTGGCGATCTTGTCC 60.002 52.381 0.00 0.00 0.00 4.02
566 577 1.002033 GGCATCATTGGCGATCTTGTC 60.002 52.381 0.00 0.00 38.79 3.18
567 578 1.027357 GGCATCATTGGCGATCTTGT 58.973 50.000 0.00 0.00 38.79 3.16
568 579 3.859650 GGCATCATTGGCGATCTTG 57.140 52.632 0.00 0.00 38.79 3.02
576 587 0.607489 GGATCGGAGGGCATCATTGG 60.607 60.000 0.08 0.00 0.00 3.16
577 588 0.399454 AGGATCGGAGGGCATCATTG 59.601 55.000 0.08 0.00 0.00 2.82
578 589 1.143813 AAGGATCGGAGGGCATCATT 58.856 50.000 0.08 0.00 0.00 2.57
579 590 1.625818 GTAAGGATCGGAGGGCATCAT 59.374 52.381 0.08 0.00 0.00 2.45
580 591 1.048601 GTAAGGATCGGAGGGCATCA 58.951 55.000 0.08 0.00 0.00 3.07
581 592 1.001406 CTGTAAGGATCGGAGGGCATC 59.999 57.143 0.00 0.00 0.00 3.91
582 593 1.051812 CTGTAAGGATCGGAGGGCAT 58.948 55.000 0.00 0.00 0.00 4.40
583 594 0.032515 TCTGTAAGGATCGGAGGGCA 60.033 55.000 0.00 0.00 0.00 5.36
584 595 1.343069 ATCTGTAAGGATCGGAGGGC 58.657 55.000 0.00 0.00 0.00 5.19
585 596 4.423625 AAAATCTGTAAGGATCGGAGGG 57.576 45.455 0.00 0.00 0.00 4.30
605 616 7.409874 GCATGTTGCGTTATTGATTCGTAAAAA 60.410 33.333 0.00 0.00 31.71 1.94
606 617 6.032985 GCATGTTGCGTTATTGATTCGTAAAA 59.967 34.615 0.00 0.00 31.71 1.52
607 618 5.509972 GCATGTTGCGTTATTGATTCGTAAA 59.490 36.000 0.00 0.00 31.71 2.01
608 619 5.025190 GCATGTTGCGTTATTGATTCGTAA 58.975 37.500 0.00 0.00 31.71 3.18
609 620 4.495019 GGCATGTTGCGTTATTGATTCGTA 60.495 41.667 0.00 0.00 46.21 3.43
610 621 3.425404 GCATGTTGCGTTATTGATTCGT 58.575 40.909 0.00 0.00 31.71 3.85
611 622 2.783284 GGCATGTTGCGTTATTGATTCG 59.217 45.455 0.00 0.00 46.21 3.34
612 623 2.783284 CGGCATGTTGCGTTATTGATTC 59.217 45.455 0.00 0.00 46.21 2.52
613 624 2.421775 TCGGCATGTTGCGTTATTGATT 59.578 40.909 0.00 0.00 46.21 2.57
614 625 2.013400 TCGGCATGTTGCGTTATTGAT 58.987 42.857 0.00 0.00 46.21 2.57
615 626 1.443802 TCGGCATGTTGCGTTATTGA 58.556 45.000 0.00 0.00 46.21 2.57
616 627 2.375110 GATCGGCATGTTGCGTTATTG 58.625 47.619 0.00 0.00 46.21 1.90
617 628 1.333619 GGATCGGCATGTTGCGTTATT 59.666 47.619 0.00 0.00 46.21 1.40
618 629 0.944386 GGATCGGCATGTTGCGTTAT 59.056 50.000 0.00 0.00 46.21 1.89
619 630 0.107897 AGGATCGGCATGTTGCGTTA 60.108 50.000 0.00 0.00 46.21 3.18
620 631 0.107897 TAGGATCGGCATGTTGCGTT 60.108 50.000 0.00 0.00 46.21 4.84
621 632 0.106708 ATAGGATCGGCATGTTGCGT 59.893 50.000 0.00 0.00 46.21 5.24
622 633 0.792640 GATAGGATCGGCATGTTGCG 59.207 55.000 0.00 0.00 46.21 4.85
633 644 8.433421 TTTCTTTGTTTATGGTCGATAGGATC 57.567 34.615 0.00 0.00 0.00 3.36
634 645 8.801882 TTTTCTTTGTTTATGGTCGATAGGAT 57.198 30.769 0.00 0.00 0.00 3.24
635 646 8.673711 CATTTTCTTTGTTTATGGTCGATAGGA 58.326 33.333 0.00 0.00 0.00 2.94
636 647 8.458843 ACATTTTCTTTGTTTATGGTCGATAGG 58.541 33.333 0.00 0.00 0.00 2.57
646 657 9.554395 CCCCAGTTTTACATTTTCTTTGTTTAT 57.446 29.630 0.00 0.00 0.00 1.40
647 658 8.541234 ACCCCAGTTTTACATTTTCTTTGTTTA 58.459 29.630 0.00 0.00 0.00 2.01
648 659 7.398829 ACCCCAGTTTTACATTTTCTTTGTTT 58.601 30.769 0.00 0.00 0.00 2.83
649 660 6.953101 ACCCCAGTTTTACATTTTCTTTGTT 58.047 32.000 0.00 0.00 0.00 2.83
650 661 6.553953 ACCCCAGTTTTACATTTTCTTTGT 57.446 33.333 0.00 0.00 0.00 2.83
651 662 8.950208 TTTACCCCAGTTTTACATTTTCTTTG 57.050 30.769 0.00 0.00 0.00 2.77
652 663 9.386010 GTTTTACCCCAGTTTTACATTTTCTTT 57.614 29.630 0.00 0.00 0.00 2.52
653 664 7.988599 GGTTTTACCCCAGTTTTACATTTTCTT 59.011 33.333 0.00 0.00 30.04 2.52
654 665 7.502696 GGTTTTACCCCAGTTTTACATTTTCT 58.497 34.615 0.00 0.00 30.04 2.52
655 666 6.421501 CGGTTTTACCCCAGTTTTACATTTTC 59.578 38.462 0.00 0.00 33.75 2.29
656 667 6.127111 ACGGTTTTACCCCAGTTTTACATTTT 60.127 34.615 0.00 0.00 33.75 1.82
657 668 5.363292 ACGGTTTTACCCCAGTTTTACATTT 59.637 36.000 0.00 0.00 33.75 2.32
658 669 4.894705 ACGGTTTTACCCCAGTTTTACATT 59.105 37.500 0.00 0.00 33.75 2.71
659 670 4.278919 CACGGTTTTACCCCAGTTTTACAT 59.721 41.667 0.00 0.00 33.75 2.29
660 671 3.631227 CACGGTTTTACCCCAGTTTTACA 59.369 43.478 0.00 0.00 33.75 2.41
661 672 3.631686 ACACGGTTTTACCCCAGTTTTAC 59.368 43.478 0.00 0.00 33.75 2.01
662 673 3.895998 ACACGGTTTTACCCCAGTTTTA 58.104 40.909 0.00 0.00 33.75 1.52
663 674 2.737544 ACACGGTTTTACCCCAGTTTT 58.262 42.857 0.00 0.00 33.75 2.43
664 675 2.440517 ACACGGTTTTACCCCAGTTT 57.559 45.000 0.00 0.00 33.75 2.66
665 676 2.440517 AACACGGTTTTACCCCAGTT 57.559 45.000 0.00 0.00 33.75 3.16
666 677 3.574354 TTAACACGGTTTTACCCCAGT 57.426 42.857 0.00 0.00 33.75 4.00
667 678 4.338964 ACTTTTAACACGGTTTTACCCCAG 59.661 41.667 0.00 0.00 33.75 4.45
668 679 4.276642 ACTTTTAACACGGTTTTACCCCA 58.723 39.130 0.00 0.00 33.75 4.96
669 680 4.580167 AGACTTTTAACACGGTTTTACCCC 59.420 41.667 0.00 0.00 33.75 4.95
670 681 5.756195 AGACTTTTAACACGGTTTTACCC 57.244 39.130 0.00 0.00 33.75 3.69
671 682 9.566530 TTTAAAGACTTTTAACACGGTTTTACC 57.433 29.630 5.61 0.00 38.21 2.85
676 687 9.511144 CAGATTTTAAAGACTTTTAACACGGTT 57.489 29.630 5.61 0.00 38.21 4.44
677 688 8.895737 TCAGATTTTAAAGACTTTTAACACGGT 58.104 29.630 5.61 0.00 38.21 4.83
678 689 9.893305 ATCAGATTTTAAAGACTTTTAACACGG 57.107 29.630 5.61 1.98 38.21 4.94
697 708 9.612620 GCGGAAATTTTATCGAAATATCAGATT 57.387 29.630 11.76 0.00 36.96 2.40
698 709 9.003658 AGCGGAAATTTTATCGAAATATCAGAT 57.996 29.630 11.76 0.00 36.96 2.90
699 710 8.378172 AGCGGAAATTTTATCGAAATATCAGA 57.622 30.769 11.76 0.00 36.96 3.27
704 715 9.672086 CCATTTAGCGGAAATTTTATCGAAATA 57.328 29.630 11.76 1.92 36.96 1.40
705 716 7.651704 CCCATTTAGCGGAAATTTTATCGAAAT 59.348 33.333 11.76 7.84 39.63 2.17
706 717 6.975772 CCCATTTAGCGGAAATTTTATCGAAA 59.024 34.615 11.76 6.39 35.45 3.46
707 718 6.460399 CCCCATTTAGCGGAAATTTTATCGAA 60.460 38.462 11.76 1.36 35.45 3.71
708 719 5.009210 CCCCATTTAGCGGAAATTTTATCGA 59.991 40.000 11.76 0.00 35.45 3.59
709 720 5.219633 CCCCATTTAGCGGAAATTTTATCG 58.780 41.667 0.00 0.00 35.45 2.92
710 721 6.156748 ACCCCATTTAGCGGAAATTTTATC 57.843 37.500 0.00 0.00 35.45 1.75
711 722 7.663043 TTACCCCATTTAGCGGAAATTTTAT 57.337 32.000 0.00 0.00 35.45 1.40
712 723 7.663043 ATTACCCCATTTAGCGGAAATTTTA 57.337 32.000 0.00 0.00 35.45 1.52
713 724 6.553953 ATTACCCCATTTAGCGGAAATTTT 57.446 33.333 0.00 0.00 35.45 1.82
714 725 7.289084 ACATATTACCCCATTTAGCGGAAATTT 59.711 33.333 0.00 0.00 35.45 1.82
715 726 6.780522 ACATATTACCCCATTTAGCGGAAATT 59.219 34.615 0.00 0.00 35.45 1.82
716 727 6.208599 CACATATTACCCCATTTAGCGGAAAT 59.791 38.462 0.00 0.00 38.34 2.17
717 728 5.533154 CACATATTACCCCATTTAGCGGAAA 59.467 40.000 0.00 0.00 0.00 3.13
718 729 5.067273 CACATATTACCCCATTTAGCGGAA 58.933 41.667 0.00 0.00 0.00 4.30
719 730 4.103469 ACACATATTACCCCATTTAGCGGA 59.897 41.667 0.00 0.00 0.00 5.54
720 731 4.394729 ACACATATTACCCCATTTAGCGG 58.605 43.478 0.00 0.00 0.00 5.52
721 732 5.049680 GTGACACATATTACCCCATTTAGCG 60.050 44.000 0.00 0.00 0.00 4.26
722 733 5.825679 TGTGACACATATTACCCCATTTAGC 59.174 40.000 3.56 0.00 0.00 3.09
723 734 7.873719 TTGTGACACATATTACCCCATTTAG 57.126 36.000 9.55 0.00 0.00 1.85
724 735 8.690884 CATTTGTGACACATATTACCCCATTTA 58.309 33.333 9.55 0.00 0.00 1.40
725 736 7.180051 ACATTTGTGACACATATTACCCCATTT 59.820 33.333 9.55 0.00 0.00 2.32
726 737 6.667414 ACATTTGTGACACATATTACCCCATT 59.333 34.615 9.55 0.00 0.00 3.16
727 738 6.194235 ACATTTGTGACACATATTACCCCAT 58.806 36.000 9.55 0.00 0.00 4.00
728 739 5.575157 ACATTTGTGACACATATTACCCCA 58.425 37.500 9.55 0.00 0.00 4.96
729 740 6.600032 TGTACATTTGTGACACATATTACCCC 59.400 38.462 9.55 0.00 0.00 4.95
730 741 7.618502 TGTACATTTGTGACACATATTACCC 57.381 36.000 9.55 0.00 0.00 3.69
731 742 8.726988 AGTTGTACATTTGTGACACATATTACC 58.273 33.333 9.55 1.21 0.00 2.85
734 745 9.278978 TGTAGTTGTACATTTGTGACACATATT 57.721 29.630 9.55 4.46 34.02 1.28
735 746 8.840833 TGTAGTTGTACATTTGTGACACATAT 57.159 30.769 9.55 7.43 34.02 1.78
736 747 8.664211 TTGTAGTTGTACATTTGTGACACATA 57.336 30.769 9.55 5.01 38.98 2.29
737 748 7.255104 CCTTGTAGTTGTACATTTGTGACACAT 60.255 37.037 9.55 0.00 38.98 3.21
738 749 6.037720 CCTTGTAGTTGTACATTTGTGACACA 59.962 38.462 3.56 3.56 38.98 3.72
739 750 6.037830 ACCTTGTAGTTGTACATTTGTGACAC 59.962 38.462 0.00 0.00 38.98 3.67
740 751 6.116806 ACCTTGTAGTTGTACATTTGTGACA 58.883 36.000 0.00 0.00 38.98 3.58
741 752 6.613755 ACCTTGTAGTTGTACATTTGTGAC 57.386 37.500 0.00 0.00 38.98 3.67
742 753 8.734218 TTTACCTTGTAGTTGTACATTTGTGA 57.266 30.769 0.00 0.00 38.98 3.58
743 754 9.790389 TTTTTACCTTGTAGTTGTACATTTGTG 57.210 29.630 0.00 0.00 38.98 3.33
747 758 8.626526 CCACTTTTTACCTTGTAGTTGTACATT 58.373 33.333 0.00 0.00 38.98 2.71
748 759 7.994334 TCCACTTTTTACCTTGTAGTTGTACAT 59.006 33.333 0.00 0.00 38.98 2.29
749 760 7.337167 TCCACTTTTTACCTTGTAGTTGTACA 58.663 34.615 0.00 0.00 37.38 2.90
750 761 7.790823 TCCACTTTTTACCTTGTAGTTGTAC 57.209 36.000 0.00 0.00 0.00 2.90
751 762 8.983702 ATTCCACTTTTTACCTTGTAGTTGTA 57.016 30.769 0.00 0.00 0.00 2.41
752 763 7.891498 ATTCCACTTTTTACCTTGTAGTTGT 57.109 32.000 0.00 0.00 0.00 3.32
753 764 8.410141 TGAATTCCACTTTTTACCTTGTAGTTG 58.590 33.333 2.27 0.00 0.00 3.16
754 765 8.410912 GTGAATTCCACTTTTTACCTTGTAGTT 58.589 33.333 2.27 0.00 42.44 2.24
755 766 7.937649 GTGAATTCCACTTTTTACCTTGTAGT 58.062 34.615 2.27 0.00 42.44 2.73
770 781 7.095187 ACTCGTTTTCATAAGAGTGAATTCCAC 60.095 37.037 2.27 1.64 46.03 4.02
771 782 6.934645 ACTCGTTTTCATAAGAGTGAATTCCA 59.065 34.615 2.27 0.00 41.77 3.53
772 783 7.365840 ACTCGTTTTCATAAGAGTGAATTCC 57.634 36.000 2.27 0.00 41.77 3.01
773 784 8.283291 ACAACTCGTTTTCATAAGAGTGAATTC 58.717 33.333 0.00 0.00 42.42 2.17
774 785 8.154649 ACAACTCGTTTTCATAAGAGTGAATT 57.845 30.769 0.00 0.00 42.42 2.17
775 786 7.730364 ACAACTCGTTTTCATAAGAGTGAAT 57.270 32.000 0.00 0.00 42.42 2.57
776 787 8.545420 GTTACAACTCGTTTTCATAAGAGTGAA 58.455 33.333 0.00 0.00 42.42 3.18
777 788 7.707464 TGTTACAACTCGTTTTCATAAGAGTGA 59.293 33.333 0.00 0.00 42.42 3.41
778 789 7.847487 TGTTACAACTCGTTTTCATAAGAGTG 58.153 34.615 0.00 0.00 42.42 3.51
779 790 7.709613 ACTGTTACAACTCGTTTTCATAAGAGT 59.290 33.333 0.00 0.00 44.81 3.24
780 791 8.004344 CACTGTTACAACTCGTTTTCATAAGAG 58.996 37.037 0.00 0.00 36.83 2.85
781 792 7.042321 CCACTGTTACAACTCGTTTTCATAAGA 60.042 37.037 0.00 0.00 0.00 2.10
782 793 7.042321 TCCACTGTTACAACTCGTTTTCATAAG 60.042 37.037 0.00 0.00 0.00 1.73
783 794 6.762187 TCCACTGTTACAACTCGTTTTCATAA 59.238 34.615 0.00 0.00 0.00 1.90
784 795 6.201425 GTCCACTGTTACAACTCGTTTTCATA 59.799 38.462 0.00 0.00 0.00 2.15
785 796 5.007332 GTCCACTGTTACAACTCGTTTTCAT 59.993 40.000 0.00 0.00 0.00 2.57
786 797 4.330620 GTCCACTGTTACAACTCGTTTTCA 59.669 41.667 0.00 0.00 0.00 2.69
787 798 4.330620 TGTCCACTGTTACAACTCGTTTTC 59.669 41.667 0.00 0.00 0.00 2.29
788 799 4.255301 TGTCCACTGTTACAACTCGTTTT 58.745 39.130 0.00 0.00 0.00 2.43
789 800 3.864243 TGTCCACTGTTACAACTCGTTT 58.136 40.909 0.00 0.00 0.00 3.60
790 801 3.118884 ACTGTCCACTGTTACAACTCGTT 60.119 43.478 0.00 0.00 0.00 3.85
791 802 2.429610 ACTGTCCACTGTTACAACTCGT 59.570 45.455 0.00 0.00 0.00 4.18
894 913 8.932791 GTCTAAAATCGACATAAGTTTTCTGGA 58.067 33.333 0.00 0.00 0.00 3.86
895 914 8.717821 TGTCTAAAATCGACATAAGTTTTCTGG 58.282 33.333 0.00 0.00 36.54 3.86
1144 1163 9.404348 CACTGTAGATATACTATTGACTGCAAG 57.596 37.037 0.00 0.00 37.45 4.01
1356 1377 8.761575 ACAAGTACATATTTGCCTGAAAATTG 57.238 30.769 0.00 0.00 32.16 2.32
1394 1415 5.043737 TCATATAAACTACTTGTGGGGCC 57.956 43.478 0.00 0.00 0.00 5.80
1424 1445 9.227777 GTGACAACTTAAGGTATTTTAGGTGAT 57.772 33.333 7.53 0.00 0.00 3.06
1461 1756 4.402056 TTTCAGTGAAGAAGTTCCTCGT 57.598 40.909 5.56 0.00 0.00 4.18
1473 1768 9.912634 GATGTGGAATAAAATCTTTTCAGTGAA 57.087 29.630 0.08 0.08 0.00 3.18
1525 1820 4.640789 AGAGTCGATGATCAAGTACACC 57.359 45.455 0.00 0.00 0.00 4.16
1725 2025 1.474017 CGCCTTAGTTCGTACCATCG 58.526 55.000 0.00 0.00 0.00 3.84
1890 2190 4.724279 ACCTTGACAATCCTGGTAAAGT 57.276 40.909 0.00 0.00 0.00 2.66
1943 2243 1.135575 GCTTTTCAAGCGTGGATCTGG 60.136 52.381 0.00 0.00 45.74 3.86
1965 2265 8.888579 ACTCGGTTTAGATGTTATTTATGAGG 57.111 34.615 0.00 0.00 0.00 3.86
1980 2280 5.232463 TGCTTAACACCTTACTCGGTTTAG 58.768 41.667 0.00 0.00 34.29 1.85
1981 2281 5.212532 TGCTTAACACCTTACTCGGTTTA 57.787 39.130 0.00 0.00 34.29 2.01
1987 2287 5.046807 TCCCTACTTGCTTAACACCTTACTC 60.047 44.000 0.00 0.00 0.00 2.59
2068 2368 0.921896 ACATGCATCACTAAGGCCCT 59.078 50.000 0.00 0.00 0.00 5.19
2179 2480 5.808366 ACACTTGACTGAATCTGAACCTA 57.192 39.130 0.00 0.00 0.00 3.08
2195 2496 3.835378 TCATGCAGCACAATACACTTG 57.165 42.857 0.00 0.00 0.00 3.16
2227 2530 4.891756 TCTACTCCTAGTTAATCCCCGTTG 59.108 45.833 0.00 0.00 0.00 4.10
2235 2538 7.397761 ACTGCTGAAGTTCTACTCCTAGTTAAT 59.602 37.037 4.17 0.00 34.57 1.40
2236 2539 6.720288 ACTGCTGAAGTTCTACTCCTAGTTAA 59.280 38.462 4.17 0.00 34.57 2.01
2264 2598 2.485814 GCACTTTCCTGGCAAGTTAGAG 59.514 50.000 9.08 0.00 31.83 2.43
2329 2664 9.289782 AGATTACATCCTTGCAAAATAGTATCC 57.710 33.333 0.00 0.00 0.00 2.59
2351 2686 8.785946 CCAAAATTCAAATGCAAAAGGTAGATT 58.214 29.630 0.00 0.00 0.00 2.40
2454 2840 0.729116 GAGGCATCACGTTGTCCATG 59.271 55.000 0.00 0.00 0.00 3.66
2455 2841 0.615331 AGAGGCATCACGTTGTCCAT 59.385 50.000 0.00 0.00 0.00 3.41
2464 2850 2.162408 GCTGTTAACCAAGAGGCATCAC 59.838 50.000 0.00 0.00 39.06 3.06
2623 3015 4.764823 TGGGAAACGATCAAAATTGCTAGT 59.235 37.500 0.00 0.00 0.00 2.57
2636 3028 3.447229 GGACATTGGAAATGGGAAACGAT 59.553 43.478 5.08 0.00 0.00 3.73
3121 3513 1.211709 CCAAATGAACCGCCGTTCC 59.788 57.895 14.16 0.00 46.67 3.62
3123 3515 2.648454 GCCAAATGAACCGCCGTT 59.352 55.556 0.00 0.00 33.88 4.44
3124 3516 3.732892 CGCCAAATGAACCGCCGT 61.733 61.111 0.00 0.00 0.00 5.68
3151 3543 9.956797 CACACAGAAAAACAAACTATTCAAAAG 57.043 29.630 0.00 0.00 0.00 2.27
3152 3544 8.439286 GCACACAGAAAAACAAACTATTCAAAA 58.561 29.630 0.00 0.00 0.00 2.44
3153 3545 7.600375 TGCACACAGAAAAACAAACTATTCAAA 59.400 29.630 0.00 0.00 0.00 2.69
3154 3546 7.093354 TGCACACAGAAAAACAAACTATTCAA 58.907 30.769 0.00 0.00 0.00 2.69
3155 3547 6.625362 TGCACACAGAAAAACAAACTATTCA 58.375 32.000 0.00 0.00 0.00 2.57
3417 3809 1.799519 CTGACTCTGAGACGCGTGC 60.800 63.158 20.70 9.48 0.00 5.34
3985 4377 0.758734 TTAGGTGGCAGGGATCATCG 59.241 55.000 0.00 0.00 0.00 3.84
3996 4388 3.442273 TGAACCAAATTCGATTAGGTGGC 59.558 43.478 5.45 3.18 40.56 5.01
4415 4807 3.708220 CTCTCTTCCGCCGTCCTGC 62.708 68.421 0.00 0.00 0.00 4.85
4424 4816 2.364317 TGCTCCCCCTCTCTTCCG 60.364 66.667 0.00 0.00 0.00 4.30
4643 5036 1.191489 TCTCTCAACCATGACGCCCA 61.191 55.000 0.00 0.00 0.00 5.36
4644 5037 0.460987 CTCTCTCAACCATGACGCCC 60.461 60.000 0.00 0.00 0.00 6.13
4726 5120 4.537945 AGTGAGCTACCCCTAGATTGTA 57.462 45.455 0.00 0.00 0.00 2.41
4737 5131 4.508662 ACAGCTTTGATTAGTGAGCTACC 58.491 43.478 0.00 0.00 43.17 3.18
4771 5165 8.453320 TGAACATCTCATAACTAAATGCAGTTG 58.547 33.333 10.14 2.29 39.12 3.16
4786 5180 6.420638 TGGTCAGATCAATTGAACATCTCAT 58.579 36.000 13.09 0.00 37.35 2.90
4808 5202 6.089820 GTCAATACATTCAGTTTGTTGCATGG 59.910 38.462 0.00 0.00 0.00 3.66
4941 5344 0.602905 CACGTTCTTGACCAGGGACC 60.603 60.000 0.00 0.00 0.00 4.46
5054 5457 6.203530 CACTCTGTATTTTCAACTGAAGCTCA 59.796 38.462 0.00 0.00 35.21 4.26
5198 5643 4.556501 CGCAAACTGAAGAAGCCATTACAA 60.557 41.667 0.00 0.00 0.00 2.41
5202 5647 1.336240 GCGCAAACTGAAGAAGCCATT 60.336 47.619 0.30 0.00 0.00 3.16
5233 5678 0.329596 GCTGGACCAAGAGGAACCAT 59.670 55.000 0.00 0.00 41.23 3.55
5347 5792 0.608035 GTCTGTGAAATTGGCGGGGA 60.608 55.000 0.00 0.00 0.00 4.81
5382 5827 2.183555 GTACCCTCCGAAGCCGTG 59.816 66.667 0.00 0.00 0.00 4.94
5386 5831 0.108281 GACAAGGTACCCTCCGAAGC 60.108 60.000 8.74 0.00 30.89 3.86
5389 5834 0.613853 CCAGACAAGGTACCCTCCGA 60.614 60.000 8.74 0.00 30.89 4.55
5424 5869 3.143675 ACGGCTACTACGTCGAAGA 57.856 52.632 5.05 0.00 41.25 2.87
5453 5898 1.215647 GGAGACGAACCATCAGCGT 59.784 57.895 0.00 0.00 41.45 5.07
5466 5911 3.870419 GAGAATGCTCATCAGTTGGAGAC 59.130 47.826 0.00 0.00 40.96 3.36
5515 5960 3.522553 GTGAGTAGTCCAAATTCCTCGG 58.477 50.000 0.00 0.00 0.00 4.63
5539 5984 8.664211 AGAAAAGATTTTACGAAAGACAGACT 57.336 30.769 0.00 0.00 0.00 3.24
5559 6004 7.925993 TGCGAGTATCTGAAAAGAAAAGAAAA 58.074 30.769 0.00 0.00 0.00 2.29
5567 6012 7.489435 CAGTAGAAATGCGAGTATCTGAAAAGA 59.511 37.037 0.00 0.00 0.00 2.52
5593 6038 0.878961 ACACCGACGTTCTTCAAGCC 60.879 55.000 0.00 0.00 0.00 4.35
5659 6104 8.746052 AATCGGTCAATCTCCATATGTTTAAA 57.254 30.769 1.24 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.