Multiple sequence alignment - TraesCS5A01G170100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G170100 chr5A 100.000 6818 0 0 1 6818 362785318 362778501 0.000000e+00 12591.0
1 TraesCS5A01G170100 chr5A 95.652 92 4 0 3627 3718 596449466 596449557 1.530000e-31 148.0
2 TraesCS5A01G170100 chr5B 94.276 3075 118 23 581 3633 309009275 309006237 0.000000e+00 4650.0
3 TraesCS5A01G170100 chr5B 97.197 1534 34 7 4787 6316 309005801 309004273 0.000000e+00 2586.0
4 TraesCS5A01G170100 chr5B 91.687 409 25 3 6403 6810 309004207 309003807 5.970000e-155 558.0
5 TraesCS5A01G170100 chr5B 94.981 259 12 1 4059 4317 309006049 309005792 8.230000e-109 405.0
6 TraesCS5A01G170100 chr5B 97.484 159 4 0 3712 3870 309006241 309006083 8.710000e-69 272.0
7 TraesCS5A01G170100 chr5B 88.690 168 15 3 4310 4475 330122703 330122538 1.160000e-47 202.0
8 TraesCS5A01G170100 chr5B 88.690 168 15 3 4310 4475 330432260 330432095 1.160000e-47 202.0
9 TraesCS5A01G170100 chr5B 81.938 227 32 4 590 816 309010751 309010534 4.200000e-42 183.0
10 TraesCS5A01G170100 chr5B 82.119 151 23 3 135 284 663220612 663220759 7.180000e-25 126.0
11 TraesCS5A01G170100 chr5D 93.885 1717 80 9 581 2280 273528020 273526312 0.000000e+00 2566.0
12 TraesCS5A01G170100 chr5D 97.986 1440 26 2 4787 6225 273523939 273522502 0.000000e+00 2495.0
13 TraesCS5A01G170100 chr5D 95.769 1040 37 6 2279 3315 273526075 273525040 0.000000e+00 1670.0
14 TraesCS5A01G170100 chr5D 95.329 578 18 4 6236 6810 273522112 273521541 0.000000e+00 909.0
15 TraesCS5A01G170100 chr5D 96.907 291 9 0 4027 4317 273524220 273523930 7.950000e-134 488.0
16 TraesCS5A01G170100 chr5D 95.563 293 12 1 3731 4022 273524777 273524485 1.040000e-127 468.0
17 TraesCS5A01G170100 chr5D 95.257 253 8 2 3379 3631 273525027 273524779 1.380000e-106 398.0
18 TraesCS5A01G170100 chr5D 78.752 593 73 22 1 583 273528659 273528110 1.410000e-91 348.0
19 TraesCS5A01G170100 chr6A 87.600 500 28 15 4316 4787 556659928 556659435 3.590000e-152 549.0
20 TraesCS5A01G170100 chr6A 93.069 101 5 2 3621 3720 25637765 25637666 5.510000e-31 147.0
21 TraesCS5A01G170100 chr2A 93.750 272 15 2 4316 4587 132264970 132264701 2.290000e-109 407.0
22 TraesCS5A01G170100 chr2A 93.548 93 6 0 3629 3721 71793879 71793787 9.220000e-29 139.0
23 TraesCS5A01G170100 chr2A 90.698 86 8 0 2700 2785 61771637 61771552 1.550000e-21 115.0
24 TraesCS5A01G170100 chr2A 94.286 70 4 0 2714 2783 61775565 61775496 2.600000e-19 108.0
25 TraesCS5A01G170100 chr7A 92.481 266 17 1 4316 4578 348858368 348858103 1.790000e-100 377.0
26 TraesCS5A01G170100 chr7B 88.636 176 19 1 4319 4494 439316228 439316402 5.360000e-51 213.0
27 TraesCS5A01G170100 chr4B 88.068 176 20 1 4319 4494 68650255 68650081 2.490000e-49 207.0
28 TraesCS5A01G170100 chr4B 91.489 141 12 0 4647 4787 68649465 68649325 1.940000e-45 195.0
29 TraesCS5A01G170100 chr2B 89.634 164 16 1 4315 4478 653686370 653686208 2.490000e-49 207.0
30 TraesCS5A01G170100 chr2B 87.234 141 18 0 4647 4787 653682825 653682685 1.970000e-35 161.0
31 TraesCS5A01G170100 chr2B 89.908 109 8 3 3612 3719 244880420 244880526 3.320000e-28 137.0
32 TraesCS5A01G170100 chr2B 79.808 104 12 9 3674 3773 516647894 516647796 4.410000e-07 67.6
33 TraesCS5A01G170100 chr2D 88.344 163 18 1 4319 4481 628364202 628364041 1.940000e-45 195.0
34 TraesCS5A01G170100 chr2D 91.429 105 8 1 3618 3721 25037981 25037877 7.130000e-30 143.0
35 TraesCS5A01G170100 chr2D 90.698 86 8 0 2700 2785 61301675 61301590 1.550000e-21 115.0
36 TraesCS5A01G170100 chr7D 96.629 89 3 0 3627 3715 626199882 626199970 1.530000e-31 148.0
37 TraesCS5A01G170100 chr7D 94.624 93 5 0 3629 3721 459429421 459429329 1.980000e-30 145.0
38 TraesCS5A01G170100 chr4A 85.315 143 16 5 143 284 103773136 103772998 7.130000e-30 143.0
39 TraesCS5A01G170100 chrUn 92.079 101 6 2 3621 3720 94824240 94824141 2.560000e-29 141.0
40 TraesCS5A01G170100 chr4D 92.784 97 7 0 3630 3726 322674854 322674950 2.560000e-29 141.0
41 TraesCS5A01G170100 chr6B 100.000 29 0 0 4761 4789 653766201 653766229 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G170100 chr5A 362778501 362785318 6817 True 12591.000000 12591 100.000000 1 6818 1 chr5A.!!$R1 6817
1 TraesCS5A01G170100 chr5B 309003807 309010751 6944 True 1442.333333 4650 92.927167 581 6810 6 chr5B.!!$R3 6229
2 TraesCS5A01G170100 chr5D 273521541 273528659 7118 True 1167.750000 2566 93.681000 1 6810 8 chr5D.!!$R1 6809
3 TraesCS5A01G170100 chr4B 68649325 68650255 930 True 201.000000 207 89.778500 4319 4787 2 chr4B.!!$R1 468

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 292 0.094730 GAAATGTCCTTTCGTCGGCG 59.905 55.0 1.15 1.15 34.32 6.46 F
1117 2019 0.179006 GGAGCTAATTGGGGGAGCAG 60.179 60.0 0.30 0.00 38.73 4.24 F
1248 2150 0.456142 TGGACGAAGACGAAGATGCG 60.456 55.0 0.00 0.00 42.66 4.73 F
1674 2576 0.665369 CTGGCCGCAAAAAGCTTCTG 60.665 55.0 0.00 1.34 42.61 3.02 F
2232 3151 0.889994 TAATTGCTGCTGTTGCTGGG 59.110 50.0 0.00 0.00 40.48 4.45 F
3125 4283 1.157870 ACGTTCTTCAGTTGGGTGCG 61.158 55.0 0.00 0.00 0.00 5.34 F
4437 5866 0.249699 TTATGCGTATGTCCTGGCGG 60.250 55.0 0.00 0.00 0.00 6.13 F
4538 5967 0.030235 GTTGAACGTTGGCCTTGACC 59.970 55.0 5.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1239 2141 0.102120 AGCTCTTCTCCGCATCTTCG 59.898 55.000 0.00 0.00 0.00 3.79 R
2678 3835 0.036483 TGGACATGGATGTGTGGTCG 60.036 55.000 0.00 0.00 41.95 4.79 R
2722 3879 0.248094 GCGCTGAGAAATTTACGCCC 60.248 55.000 0.00 0.00 40.43 6.13 R
3491 4659 2.337359 TGTTGCCCTAGACCCTAGTT 57.663 50.000 0.00 0.00 0.00 2.24 R
3699 4867 1.133544 ACATAGTACTCCCTCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46 R
4519 5948 0.030235 GGTCAAGGCCAACGTTCAAC 59.970 55.000 5.01 0.00 0.00 3.18 R
5607 7504 0.108377 TGTACGCCAATCGATGCTGT 60.108 50.000 0.00 4.76 41.67 4.40 R
6343 8634 0.826715 GCATGCTGGTCCTCTACTGA 59.173 55.000 11.37 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 2.262915 CGCGCTCCCTCTTGAAGT 59.737 61.111 5.56 0.00 0.00 3.01
29 31 1.677217 GCGCTCCCTCTTGAAGTCATT 60.677 52.381 0.00 0.00 0.00 2.57
40 42 6.419484 TCTTGAAGTCATTGTCTTGGAGTA 57.581 37.500 0.77 0.00 0.00 2.59
42 44 6.931281 TCTTGAAGTCATTGTCTTGGAGTAAG 59.069 38.462 0.77 0.00 37.76 2.34
49 51 6.035112 GTCATTGTCTTGGAGTAAGATTCGAC 59.965 42.308 0.00 0.00 46.50 4.20
52 54 4.765339 TGTCTTGGAGTAAGATTCGACTCA 59.235 41.667 17.95 6.83 46.50 3.41
53 55 5.106118 TGTCTTGGAGTAAGATTCGACTCAG 60.106 44.000 17.95 10.94 46.50 3.35
56 58 3.288964 GGAGTAAGATTCGACTCAGGGA 58.711 50.000 17.95 0.00 43.28 4.20
62 64 2.182858 ATTCGACTCAGGGAGGGGGT 62.183 60.000 0.00 0.00 33.35 4.95
72 74 2.361737 GAGGGGGTGGCTCTTTGC 60.362 66.667 0.00 0.00 41.94 3.68
76 78 2.349755 GGGTGGCTCTTTGCGGTA 59.650 61.111 0.00 0.00 44.05 4.02
80 82 0.602905 GTGGCTCTTTGCGGTAGTGT 60.603 55.000 0.00 0.00 44.05 3.55
84 86 1.194772 GCTCTTTGCGGTAGTGTTGAC 59.805 52.381 0.00 0.00 0.00 3.18
89 91 2.153913 GCGGTAGTGTTGACTGCTG 58.846 57.895 0.00 0.00 44.34 4.41
124 126 3.766591 TGTTGGTGTTGTCTTGGTGAAAT 59.233 39.130 0.00 0.00 0.00 2.17
131 133 6.018832 GGTGTTGTCTTGGTGAAATGAAATTG 60.019 38.462 0.00 0.00 36.10 2.32
180 182 6.610425 TCCTTTTAGAGGGGTATCTAACTGTC 59.390 42.308 0.00 0.00 46.31 3.51
193 195 0.663153 AACTGTCTTGCGCCACTTTC 59.337 50.000 4.18 0.00 0.00 2.62
194 196 0.463654 ACTGTCTTGCGCCACTTTCA 60.464 50.000 4.18 0.00 0.00 2.69
202 204 4.095782 TCTTGCGCCACTTTCAAATATACC 59.904 41.667 4.18 0.00 0.00 2.73
230 232 2.930887 GCTCAAGCACACGATTAGACCA 60.931 50.000 0.00 0.00 41.59 4.02
231 233 2.668457 CTCAAGCACACGATTAGACCAC 59.332 50.000 0.00 0.00 0.00 4.16
232 234 2.036604 TCAAGCACACGATTAGACCACA 59.963 45.455 0.00 0.00 0.00 4.17
238 240 4.158384 CACACGATTAGACCACAAATTGC 58.842 43.478 0.00 0.00 0.00 3.56
246 248 2.622942 AGACCACAAATTGCGTTGTCAT 59.377 40.909 12.35 0.22 39.73 3.06
247 249 2.979813 GACCACAAATTGCGTTGTCATC 59.020 45.455 0.00 0.00 39.73 2.92
249 251 3.818210 ACCACAAATTGCGTTGTCATCTA 59.182 39.130 0.00 0.00 39.73 1.98
250 252 4.158384 CCACAAATTGCGTTGTCATCTAC 58.842 43.478 0.00 0.00 39.73 2.59
253 255 5.565259 CACAAATTGCGTTGTCATCTACTTC 59.435 40.000 0.00 0.00 39.73 3.01
254 256 5.238432 ACAAATTGCGTTGTCATCTACTTCA 59.762 36.000 0.00 0.00 37.10 3.02
255 257 5.940192 AATTGCGTTGTCATCTACTTCAA 57.060 34.783 0.00 0.00 0.00 2.69
256 258 5.940192 ATTGCGTTGTCATCTACTTCAAA 57.060 34.783 0.00 0.00 0.00 2.69
257 259 5.743026 TTGCGTTGTCATCTACTTCAAAA 57.257 34.783 0.00 0.00 0.00 2.44
258 260 5.940192 TGCGTTGTCATCTACTTCAAAAT 57.060 34.783 0.00 0.00 0.00 1.82
259 261 5.927030 TGCGTTGTCATCTACTTCAAAATC 58.073 37.500 0.00 0.00 0.00 2.17
260 262 5.468409 TGCGTTGTCATCTACTTCAAAATCA 59.532 36.000 0.00 0.00 0.00 2.57
261 263 5.790495 GCGTTGTCATCTACTTCAAAATCAC 59.210 40.000 0.00 0.00 0.00 3.06
263 265 7.576236 CGTTGTCATCTACTTCAAAATCACTT 58.424 34.615 0.00 0.00 0.00 3.16
264 266 8.708742 CGTTGTCATCTACTTCAAAATCACTTA 58.291 33.333 0.00 0.00 0.00 2.24
266 268 9.996554 TTGTCATCTACTTCAAAATCACTTAGA 57.003 29.630 0.00 0.00 0.00 2.10
271 273 7.841956 TCTACTTCAAAATCACTTAGAGAGGG 58.158 38.462 0.00 0.00 0.00 4.30
277 279 7.461749 TCAAAATCACTTAGAGAGGGAAATGT 58.538 34.615 0.00 0.00 42.22 2.71
278 280 7.607991 TCAAAATCACTTAGAGAGGGAAATGTC 59.392 37.037 0.00 0.00 42.22 3.06
279 281 5.622346 ATCACTTAGAGAGGGAAATGTCC 57.378 43.478 0.00 0.00 42.22 4.02
284 286 3.618690 AGAGAGGGAAATGTCCTTTCG 57.381 47.619 0.82 0.00 43.57 3.46
288 290 1.084289 GGGAAATGTCCTTTCGTCGG 58.916 55.000 0.82 0.00 43.57 4.79
290 292 0.094730 GAAATGTCCTTTCGTCGGCG 59.905 55.000 1.15 1.15 34.32 6.46
300 302 3.628005 TCGTCGGCGATATTCGTTT 57.372 47.368 14.79 0.00 42.81 3.60
302 304 1.193644 CGTCGGCGATATTCGTTTGA 58.806 50.000 14.79 0.00 42.81 2.69
306 308 1.194547 CGGCGATATTCGTTTGATGGG 59.805 52.381 0.00 0.00 42.81 4.00
317 319 2.939103 CGTTTGATGGGAGGAGACATTC 59.061 50.000 0.00 0.00 0.00 2.67
330 332 5.923733 GGAGACATTCCCATCGACTATAT 57.076 43.478 0.00 0.00 40.37 0.86
376 378 3.006859 TGATATGCCGGGTCAGTATCTTG 59.993 47.826 2.18 0.00 0.00 3.02
378 380 0.824109 TGCCGGGTCAGTATCTTGAG 59.176 55.000 2.18 0.00 0.00 3.02
380 382 1.689273 GCCGGGTCAGTATCTTGAGAT 59.311 52.381 2.18 0.00 38.51 2.75
382 384 2.546795 CCGGGTCAGTATCTTGAGATGC 60.547 54.545 3.79 2.54 37.41 3.91
383 385 2.363680 CGGGTCAGTATCTTGAGATGCT 59.636 50.000 5.87 5.87 46.14 3.79
384 386 3.551863 CGGGTCAGTATCTTGAGATGCTC 60.552 52.174 8.40 0.28 43.96 4.26
385 387 3.386078 GGGTCAGTATCTTGAGATGCTCA 59.614 47.826 8.40 0.00 43.96 4.26
386 388 4.367450 GGTCAGTATCTTGAGATGCTCAC 58.633 47.826 8.40 6.60 43.96 3.51
395 399 5.527033 TCTTGAGATGCTCACGAAGATATG 58.473 41.667 1.70 0.00 40.46 1.78
396 400 4.248691 TGAGATGCTCACGAAGATATGG 57.751 45.455 0.00 0.00 35.39 2.74
399 403 1.939974 TGCTCACGAAGATATGGTGC 58.060 50.000 0.00 0.00 37.64 5.01
402 406 0.869880 TCACGAAGATATGGTGCGCG 60.870 55.000 0.00 0.00 37.64 6.86
403 407 1.141019 ACGAAGATATGGTGCGCGT 59.859 52.632 8.43 0.00 0.00 6.01
417 421 4.153655 TGGTGCGCGTATGTGTTTTTATAA 59.846 37.500 8.43 0.00 0.00 0.98
423 427 6.511444 GCGCGTATGTGTTTTTATAATGGGTA 60.511 38.462 8.43 0.00 0.00 3.69
424 428 7.577979 CGCGTATGTGTTTTTATAATGGGTAT 58.422 34.615 0.00 0.00 0.00 2.73
431 435 8.516234 TGTGTTTTTATAATGGGTATGTGTGTC 58.484 33.333 0.00 0.00 0.00 3.67
485 494 3.275617 TTATGCGGCAAGGAAGTGTAT 57.724 42.857 6.82 0.00 0.00 2.29
492 501 5.825679 TGCGGCAAGGAAGTGTATAAATATT 59.174 36.000 0.00 0.00 0.00 1.28
493 502 6.320164 TGCGGCAAGGAAGTGTATAAATATTT 59.680 34.615 0.00 5.89 0.00 1.40
495 504 8.347035 GCGGCAAGGAAGTGTATAAATATTTTA 58.653 33.333 5.91 0.00 0.00 1.52
496 505 9.659830 CGGCAAGGAAGTGTATAAATATTTTAC 57.340 33.333 5.91 9.16 0.00 2.01
497 506 9.659830 GGCAAGGAAGTGTATAAATATTTTACG 57.340 33.333 5.91 0.00 0.00 3.18
532 541 1.838077 AGATCCAGTAAACGGAAGGGG 59.162 52.381 0.00 0.00 35.77 4.79
533 542 0.916809 ATCCAGTAAACGGAAGGGGG 59.083 55.000 0.00 0.00 35.77 5.40
535 544 0.694196 CCAGTAAACGGAAGGGGGAA 59.306 55.000 0.00 0.00 0.00 3.97
536 545 1.074244 CCAGTAAACGGAAGGGGGAAA 59.926 52.381 0.00 0.00 0.00 3.13
537 546 2.433436 CAGTAAACGGAAGGGGGAAAG 58.567 52.381 0.00 0.00 0.00 2.62
538 547 2.060275 AGTAAACGGAAGGGGGAAAGT 58.940 47.619 0.00 0.00 0.00 2.66
539 548 2.039480 AGTAAACGGAAGGGGGAAAGTC 59.961 50.000 0.00 0.00 0.00 3.01
541 550 1.146452 AACGGAAGGGGGAAAGTCTT 58.854 50.000 0.00 0.00 0.00 3.01
705 1607 1.404851 GCTGACCAGTAAGCAGACTCC 60.405 57.143 2.03 0.00 37.03 3.85
987 1889 0.392595 GTTAGGGGCTTCTTGGTCGG 60.393 60.000 0.00 0.00 0.00 4.79
1117 2019 0.179006 GGAGCTAATTGGGGGAGCAG 60.179 60.000 0.30 0.00 38.73 4.24
1152 2054 1.216710 CTCACCGAGAGCAGTTCCC 59.783 63.158 0.00 0.00 37.59 3.97
1215 2117 5.698545 AGATAAAGACTGCAGTTCTGTTGAC 59.301 40.000 22.65 5.23 0.00 3.18
1239 2141 3.053455 CTCTGTGAAACTGGACGAAGAC 58.947 50.000 0.00 0.00 38.04 3.01
1245 2147 3.005472 TGAAACTGGACGAAGACGAAGAT 59.995 43.478 0.00 0.00 42.66 2.40
1248 2150 0.456142 TGGACGAAGACGAAGATGCG 60.456 55.000 0.00 0.00 42.66 4.73
1301 2203 0.685097 AGCTCCGTTTCTGCCAAGTA 59.315 50.000 0.00 0.00 0.00 2.24
1311 2213 2.048503 GCCAAGTACAGCGACGGT 60.049 61.111 0.00 0.00 0.00 4.83
1593 2495 4.290155 GTGACATTGGCAGTGTTTACTTG 58.710 43.478 17.11 0.00 34.07 3.16
1647 2549 2.028420 TGAAGATCATGGACAAGGCG 57.972 50.000 0.00 0.00 0.00 5.52
1674 2576 0.665369 CTGGCCGCAAAAAGCTTCTG 60.665 55.000 0.00 1.34 42.61 3.02
1710 2612 2.928334 AGGGAGATATTGCAGTGCTTG 58.072 47.619 17.60 0.00 0.00 4.01
1722 2624 1.815003 CAGTGCTTGGACCATCCTTTC 59.185 52.381 0.00 0.00 37.46 2.62
1867 2769 3.056179 AGCTGCCAAGTAAGAGTCTTCTC 60.056 47.826 9.12 4.35 40.70 2.87
1994 2896 7.121759 GTCTACTAATACAACTGGGTCAGTACA 59.878 40.741 0.67 0.00 44.62 2.90
2198 3117 8.766151 GGAACTTATCTATTACTGTTAGCAAGC 58.234 37.037 0.00 0.00 0.00 4.01
2232 3151 0.889994 TAATTGCTGCTGTTGCTGGG 59.110 50.000 0.00 0.00 40.48 4.45
2311 3468 6.889198 TCTTAGGGATCACAAAATCTGTAGG 58.111 40.000 0.00 0.00 36.10 3.18
2512 3669 4.421131 TCTCCTTTATCAGCTCCTATCCC 58.579 47.826 0.00 0.00 0.00 3.85
2611 3768 5.634020 GCTCTCGAACACTACAAGTTGTAAT 59.366 40.000 16.26 4.06 31.67 1.89
2612 3769 6.400091 GCTCTCGAACACTACAAGTTGTAATG 60.400 42.308 19.99 19.99 36.28 1.90
2722 3879 3.700038 ACTCCCTACGTTCCTATGAGTTG 59.300 47.826 0.00 0.00 0.00 3.16
2902 4059 3.044986 GCATGCAATTAATGTAGCCGTG 58.955 45.455 14.21 5.95 0.00 4.94
2910 4067 6.202954 GCAATTAATGTAGCCGTGATCTAAGT 59.797 38.462 0.00 0.00 0.00 2.24
2925 4082 4.265904 TCTAAGTGATCCGTTCAGCAAA 57.734 40.909 0.00 0.00 34.17 3.68
3125 4283 1.157870 ACGTTCTTCAGTTGGGTGCG 61.158 55.000 0.00 0.00 0.00 5.34
3275 4442 7.337938 TCAACTGTCTGAATAAAGGCATATGA 58.662 34.615 6.97 0.00 29.80 2.15
3276 4443 7.828717 TCAACTGTCTGAATAAAGGCATATGAA 59.171 33.333 6.97 0.00 29.80 2.57
3415 4583 3.247648 GCAGCGTAGTAATACCCATTGTG 59.752 47.826 0.00 0.00 0.00 3.33
3478 4646 8.662781 TGCCTAATTCAGTTACACTATTCATC 57.337 34.615 0.00 0.00 0.00 2.92
3488 4656 9.653287 CAGTTACACTATTCATCTTTCAAGGTA 57.347 33.333 0.00 0.00 0.00 3.08
3489 4657 9.654663 AGTTACACTATTCATCTTTCAAGGTAC 57.345 33.333 0.00 0.00 0.00 3.34
3512 4680 2.846950 ACTAGGGTCTAGGGCAACATT 58.153 47.619 6.86 0.00 39.74 2.71
3598 4766 3.633525 TGCCCTATTGACATCATGCTTTC 59.366 43.478 0.00 0.00 0.00 2.62
3633 4801 9.685828 GTTCCTTATTATGTCTGAGATGTACTC 57.314 37.037 0.00 0.00 45.11 2.59
3634 4802 8.410673 TCCTTATTATGTCTGAGATGTACTCC 57.589 38.462 0.00 0.00 44.34 3.85
3635 4803 7.451877 TCCTTATTATGTCTGAGATGTACTCCC 59.548 40.741 0.00 0.00 44.34 4.30
3636 4804 7.453126 CCTTATTATGTCTGAGATGTACTCCCT 59.547 40.741 0.00 0.00 44.34 4.20
3637 4805 6.909550 ATTATGTCTGAGATGTACTCCCTC 57.090 41.667 0.00 0.00 44.34 4.30
3638 4806 4.534647 ATGTCTGAGATGTACTCCCTCT 57.465 45.455 0.00 0.00 44.34 3.69
3639 4807 3.625853 TGTCTGAGATGTACTCCCTCTG 58.374 50.000 0.00 2.91 44.34 3.35
3640 4808 3.010696 TGTCTGAGATGTACTCCCTCTGT 59.989 47.826 0.00 0.00 44.34 3.41
3641 4809 3.630312 GTCTGAGATGTACTCCCTCTGTC 59.370 52.174 0.00 0.00 44.34 3.51
3642 4810 2.955660 CTGAGATGTACTCCCTCTGTCC 59.044 54.545 0.00 0.00 44.34 4.02
3643 4811 2.312390 GAGATGTACTCCCTCTGTCCC 58.688 57.143 0.00 0.00 39.53 4.46
3644 4812 1.646447 AGATGTACTCCCTCTGTCCCA 59.354 52.381 0.00 0.00 0.00 4.37
3645 4813 2.248686 AGATGTACTCCCTCTGTCCCAT 59.751 50.000 0.00 0.00 0.00 4.00
3646 4814 3.467483 AGATGTACTCCCTCTGTCCCATA 59.533 47.826 0.00 0.00 0.00 2.74
3647 4815 3.769189 TGTACTCCCTCTGTCCCATAA 57.231 47.619 0.00 0.00 0.00 1.90
3648 4816 4.280789 TGTACTCCCTCTGTCCCATAAT 57.719 45.455 0.00 0.00 0.00 1.28
3649 4817 3.967326 TGTACTCCCTCTGTCCCATAATG 59.033 47.826 0.00 0.00 0.00 1.90
3650 4818 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
3651 4819 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
3652 4820 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
3653 4821 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
3654 4822 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
3655 4823 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
3656 4824 4.501571 CCCTCTGTCCCATAATGTAAGACG 60.502 50.000 0.00 0.00 0.00 4.18
3657 4825 4.099573 CCTCTGTCCCATAATGTAAGACGT 59.900 45.833 0.00 0.00 0.00 4.34
3658 4826 5.395324 CCTCTGTCCCATAATGTAAGACGTT 60.395 44.000 0.00 0.00 0.00 3.99
3659 4827 6.045072 TCTGTCCCATAATGTAAGACGTTT 57.955 37.500 0.00 0.00 0.00 3.60
3660 4828 6.469410 TCTGTCCCATAATGTAAGACGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
3661 4829 6.938030 TCTGTCCCATAATGTAAGACGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
3662 4830 7.118680 TCTGTCCCATAATGTAAGACGTTTTTC 59.881 37.037 0.00 0.00 0.00 2.29
3663 4831 6.128499 TGTCCCATAATGTAAGACGTTTTTCG 60.128 38.462 0.00 0.00 46.00 3.46
3664 4832 6.091169 GTCCCATAATGTAAGACGTTTTTCGA 59.909 38.462 0.00 0.00 42.86 3.71
3665 4833 6.091169 TCCCATAATGTAAGACGTTTTTCGAC 59.909 38.462 0.00 0.00 42.86 4.20
3666 4834 6.091713 CCCATAATGTAAGACGTTTTTCGACT 59.908 38.462 0.00 0.00 45.03 4.18
3667 4835 7.171434 CCATAATGTAAGACGTTTTTCGACTC 58.829 38.462 0.00 0.00 42.74 3.36
3668 4836 7.063074 CCATAATGTAAGACGTTTTTCGACTCT 59.937 37.037 0.00 0.00 42.74 3.24
3669 4837 9.069078 CATAATGTAAGACGTTTTTCGACTCTA 57.931 33.333 0.00 0.00 42.74 2.43
3670 4838 7.935338 AATGTAAGACGTTTTTCGACTCTAA 57.065 32.000 0.00 0.00 42.74 2.10
3671 4839 8.530269 AATGTAAGACGTTTTTCGACTCTAAT 57.470 30.769 0.00 0.00 42.74 1.73
3672 4840 7.329438 TGTAAGACGTTTTTCGACTCTAATG 57.671 36.000 0.00 0.00 42.74 1.90
3673 4841 6.919662 TGTAAGACGTTTTTCGACTCTAATGT 59.080 34.615 0.00 0.00 42.74 2.71
3674 4842 8.075574 TGTAAGACGTTTTTCGACTCTAATGTA 58.924 33.333 0.00 0.00 42.74 2.29
3675 4843 7.564044 AAGACGTTTTTCGACTCTAATGTAG 57.436 36.000 0.00 0.00 42.74 2.74
3676 4844 6.675987 AGACGTTTTTCGACTCTAATGTAGT 58.324 36.000 0.00 0.00 39.99 2.73
3677 4845 6.581542 AGACGTTTTTCGACTCTAATGTAGTG 59.418 38.462 0.00 0.00 39.99 2.74
3678 4846 6.211515 ACGTTTTTCGACTCTAATGTAGTGT 58.788 36.000 0.00 0.00 42.86 3.55
3679 4847 6.361748 ACGTTTTTCGACTCTAATGTAGTGTC 59.638 38.462 7.21 7.21 42.71 3.67
3680 4848 6.361481 CGTTTTTCGACTCTAATGTAGTGTCA 59.639 38.462 14.46 3.46 45.03 3.58
3681 4849 7.096353 CGTTTTTCGACTCTAATGTAGTGTCAA 60.096 37.037 14.46 7.66 45.03 3.18
3682 4850 8.545420 GTTTTTCGACTCTAATGTAGTGTCAAA 58.455 33.333 14.46 11.38 45.03 2.69
3683 4851 8.651391 TTTTCGACTCTAATGTAGTGTCAAAA 57.349 30.769 14.46 14.69 45.03 2.44
3684 4852 8.651391 TTTCGACTCTAATGTAGTGTCAAAAA 57.349 30.769 14.46 11.50 45.03 1.94
3706 4874 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
3707 4875 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
3708 4876 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
3709 4877 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3710 4878 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3711 4879 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3712 4880 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
3713 4881 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
3714 4882 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
3715 4883 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
3764 4932 4.600692 ACTACAACTGCACATGTACTCA 57.399 40.909 0.00 0.00 0.00 3.41
3806 4974 0.749454 CCCCCACTTCTGTATGCAGC 60.749 60.000 5.85 0.00 42.29 5.25
3879 5047 7.951347 ATGCATTTCCTCTCTATTTTTCACT 57.049 32.000 0.00 0.00 0.00 3.41
3950 5119 9.347240 TCTCTTTCTTGAAATGACTCTTTTGAT 57.653 29.630 0.00 0.00 0.00 2.57
4115 5544 0.400594 GGTTAGGGACAGTGTGGCTT 59.599 55.000 0.00 0.00 0.00 4.35
4121 5550 0.250513 GGACAGTGTGGCTTCTAGGG 59.749 60.000 0.00 0.00 0.00 3.53
4139 5568 7.034967 TCTAGGGATAGGAGAGATTAAGACC 57.965 44.000 0.00 0.00 0.00 3.85
4265 5694 6.317893 ACAATATGGAACTAACCAACCGAATC 59.682 38.462 0.00 0.00 43.47 2.52
4425 5854 0.321298 AGTCAAGCGGGTTTATGCGT 60.321 50.000 0.00 0.00 35.87 5.24
4432 5861 1.808891 GCGGGTTTATGCGTATGTCCT 60.809 52.381 0.00 0.00 0.00 3.85
4434 5863 2.218603 GGGTTTATGCGTATGTCCTGG 58.781 52.381 0.00 0.00 0.00 4.45
4435 5864 1.602377 GGTTTATGCGTATGTCCTGGC 59.398 52.381 0.00 0.00 0.00 4.85
4437 5866 0.249699 TTATGCGTATGTCCTGGCGG 60.250 55.000 0.00 0.00 0.00 6.13
4438 5867 1.396607 TATGCGTATGTCCTGGCGGT 61.397 55.000 0.00 0.00 0.00 5.68
4439 5868 2.890474 GCGTATGTCCTGGCGGTG 60.890 66.667 0.00 0.00 0.00 4.94
4440 5869 2.890474 CGTATGTCCTGGCGGTGC 60.890 66.667 0.00 0.00 0.00 5.01
4455 5884 2.916703 TGCCTGCAATTTGCCCGT 60.917 55.556 18.27 0.00 44.23 5.28
4458 5887 1.080569 CCTGCAATTTGCCCGTGTC 60.081 57.895 18.27 0.00 44.23 3.67
4462 5891 0.737019 GCAATTTGCCCGTGTCCATG 60.737 55.000 10.34 0.00 37.42 3.66
4463 5892 0.602562 CAATTTGCCCGTGTCCATGT 59.397 50.000 0.00 0.00 0.00 3.21
4465 5894 2.426738 CAATTTGCCCGTGTCCATGTAT 59.573 45.455 0.00 0.00 0.00 2.29
4475 5904 5.290158 CCCGTGTCCATGTATATTTATACGC 59.710 44.000 0.00 0.00 41.04 4.42
4494 5923 1.334059 GCATGCGTCATTATTCCCGTG 60.334 52.381 0.00 0.00 0.00 4.94
4495 5924 2.209273 CATGCGTCATTATTCCCGTGA 58.791 47.619 0.00 0.00 0.00 4.35
4496 5925 1.647346 TGCGTCATTATTCCCGTGAC 58.353 50.000 0.00 0.00 39.02 3.67
4497 5926 0.935196 GCGTCATTATTCCCGTGACC 59.065 55.000 0.00 0.00 39.17 4.02
4498 5927 1.205657 CGTCATTATTCCCGTGACCG 58.794 55.000 0.00 0.00 39.17 4.79
4499 5928 0.935196 GTCATTATTCCCGTGACCGC 59.065 55.000 0.00 0.00 37.00 5.68
4500 5929 0.537653 TCATTATTCCCGTGACCGCA 59.462 50.000 0.00 0.00 0.00 5.69
4501 5930 0.937304 CATTATTCCCGTGACCGCAG 59.063 55.000 0.00 0.00 0.00 5.18
4502 5931 0.539986 ATTATTCCCGTGACCGCAGT 59.460 50.000 0.00 0.00 0.00 4.40
4508 5937 4.406173 CGTGACCGCAGTCGAGCT 62.406 66.667 0.00 0.00 46.74 4.09
4509 5938 2.807045 GTGACCGCAGTCGAGCTG 60.807 66.667 0.00 9.73 46.74 4.24
4510 5939 4.056125 TGACCGCAGTCGAGCTGG 62.056 66.667 14.19 10.17 46.74 4.85
4513 5942 3.826754 CCGCAGTCGAGCTGGCTA 61.827 66.667 14.19 0.00 45.14 3.93
4514 5943 2.415010 CGCAGTCGAGCTGGCTAT 59.585 61.111 14.19 0.00 45.14 2.97
4515 5944 1.227089 CGCAGTCGAGCTGGCTATT 60.227 57.895 14.19 0.00 45.14 1.73
4519 5948 1.300233 GTCGAGCTGGCTATTCCCG 60.300 63.158 0.00 0.00 0.00 5.14
4520 5949 1.756950 TCGAGCTGGCTATTCCCGT 60.757 57.895 0.00 0.00 0.00 5.28
4521 5950 1.144057 CGAGCTGGCTATTCCCGTT 59.856 57.895 0.00 0.00 0.00 4.44
4522 5951 1.154205 CGAGCTGGCTATTCCCGTTG 61.154 60.000 0.00 0.00 0.00 4.10
4523 5952 0.178068 GAGCTGGCTATTCCCGTTGA 59.822 55.000 0.00 0.00 0.00 3.18
4524 5953 0.618458 AGCTGGCTATTCCCGTTGAA 59.382 50.000 0.00 0.00 37.38 2.69
4525 5954 0.733150 GCTGGCTATTCCCGTTGAAC 59.267 55.000 0.00 0.00 35.31 3.18
4527 5956 0.322322 TGGCTATTCCCGTTGAACGT 59.678 50.000 17.05 0.10 40.58 3.99
4529 5958 1.129811 GGCTATTCCCGTTGAACGTTG 59.870 52.381 17.05 7.52 40.58 4.10
4531 5960 1.129811 CTATTCCCGTTGAACGTTGGC 59.870 52.381 17.05 0.00 40.58 4.52
4532 5961 1.520600 ATTCCCGTTGAACGTTGGCC 61.521 55.000 17.05 0.00 40.58 5.36
4533 5962 2.593436 CCCGTTGAACGTTGGCCT 60.593 61.111 17.05 0.00 40.58 5.19
4534 5963 2.190841 CCCGTTGAACGTTGGCCTT 61.191 57.895 17.05 0.00 40.58 4.35
4535 5964 1.008995 CCGTTGAACGTTGGCCTTG 60.009 57.895 17.05 0.00 40.58 3.61
4536 5965 1.440938 CCGTTGAACGTTGGCCTTGA 61.441 55.000 17.05 0.00 40.58 3.02
4537 5966 0.316689 CGTTGAACGTTGGCCTTGAC 60.317 55.000 5.00 0.00 36.74 3.18
4538 5967 0.030235 GTTGAACGTTGGCCTTGACC 59.970 55.000 5.00 0.00 0.00 4.02
4539 5968 0.106918 TTGAACGTTGGCCTTGACCT 60.107 50.000 5.00 0.00 0.00 3.85
4540 5969 0.817634 TGAACGTTGGCCTTGACCTG 60.818 55.000 5.00 0.00 0.00 4.00
4541 5970 0.534203 GAACGTTGGCCTTGACCTGA 60.534 55.000 5.00 0.00 0.00 3.86
4542 5971 0.106918 AACGTTGGCCTTGACCTGAA 60.107 50.000 3.32 0.00 0.00 3.02
4543 5972 0.535102 ACGTTGGCCTTGACCTGAAG 60.535 55.000 3.32 0.00 0.00 3.02
4544 5973 1.237285 CGTTGGCCTTGACCTGAAGG 61.237 60.000 3.32 0.00 44.86 3.46
4545 5974 0.110486 GTTGGCCTTGACCTGAAGGA 59.890 55.000 3.32 0.00 44.87 3.36
4550 5979 0.615850 CCTTGACCTGAAGGACCTCC 59.384 60.000 2.62 0.00 44.87 4.30
4560 5989 3.300032 AGGACCTCCTCGTGCAATA 57.700 52.632 0.00 0.00 44.77 1.90
4561 5990 0.824759 AGGACCTCCTCGTGCAATAC 59.175 55.000 0.00 0.00 44.77 1.89
4575 6004 1.990799 CAATACGTGCAGTCGGAAGA 58.009 50.000 0.00 0.00 38.16 2.87
4576 6005 2.540515 CAATACGTGCAGTCGGAAGAT 58.459 47.619 0.00 0.00 45.19 2.40
4577 6006 3.702330 CAATACGTGCAGTCGGAAGATA 58.298 45.455 0.00 0.00 45.19 1.98
4580 6009 1.816835 ACGTGCAGTCGGAAGATAGAA 59.183 47.619 1.59 0.00 45.19 2.10
4581 6010 2.230508 ACGTGCAGTCGGAAGATAGAAA 59.769 45.455 1.59 0.00 45.19 2.52
4592 6489 5.473846 TCGGAAGATAGAAATATCAGCTCGT 59.526 40.000 0.00 0.00 33.31 4.18
4597 6494 9.502145 GAAGATAGAAATATCAGCTCGTATCAG 57.498 37.037 0.00 0.00 0.00 2.90
4602 6499 1.681538 ATCAGCTCGTATCAGTCGGT 58.318 50.000 0.00 0.00 0.00 4.69
4605 6502 1.018148 AGCTCGTATCAGTCGGTGAG 58.982 55.000 0.00 0.00 39.07 3.51
4606 6503 1.015109 GCTCGTATCAGTCGGTGAGA 58.985 55.000 0.00 0.00 39.07 3.27
4607 6504 1.400846 GCTCGTATCAGTCGGTGAGAA 59.599 52.381 0.00 0.00 39.07 2.87
4608 6505 2.159421 GCTCGTATCAGTCGGTGAGAAA 60.159 50.000 0.00 0.00 39.07 2.52
4609 6506 3.427243 CTCGTATCAGTCGGTGAGAAAC 58.573 50.000 0.00 0.00 39.07 2.78
4611 6508 3.504906 TCGTATCAGTCGGTGAGAAACTT 59.495 43.478 0.00 0.00 39.07 2.66
4613 6510 4.090066 CGTATCAGTCGGTGAGAAACTTTG 59.910 45.833 0.00 0.00 39.07 2.77
4614 6511 3.812156 TCAGTCGGTGAGAAACTTTGA 57.188 42.857 0.00 0.00 0.00 2.69
4616 6513 5.462530 TCAGTCGGTGAGAAACTTTGATA 57.537 39.130 0.00 0.00 0.00 2.15
4617 6514 5.227908 TCAGTCGGTGAGAAACTTTGATAC 58.772 41.667 0.00 0.00 0.00 2.24
4618 6515 5.010719 TCAGTCGGTGAGAAACTTTGATACT 59.989 40.000 0.00 0.00 0.00 2.12
4620 6517 6.308282 CAGTCGGTGAGAAACTTTGATACTAC 59.692 42.308 0.00 0.00 0.00 2.73
4621 6518 6.015688 AGTCGGTGAGAAACTTTGATACTACA 60.016 38.462 0.00 0.00 0.00 2.74
4622 6519 6.812160 GTCGGTGAGAAACTTTGATACTACAT 59.188 38.462 0.00 0.00 0.00 2.29
4623 6520 6.811665 TCGGTGAGAAACTTTGATACTACATG 59.188 38.462 0.00 0.00 0.00 3.21
4624 6521 6.455646 CGGTGAGAAACTTTGATACTACATGC 60.456 42.308 0.00 0.00 0.00 4.06
4625 6522 6.371548 GGTGAGAAACTTTGATACTACATGCA 59.628 38.462 0.00 0.00 0.00 3.96
4627 6524 9.098355 GTGAGAAACTTTGATACTACATGCATA 57.902 33.333 0.00 0.00 0.00 3.14
4628 6525 9.836864 TGAGAAACTTTGATACTACATGCATAT 57.163 29.630 0.00 0.00 0.00 1.78
4632 6529 9.618890 AAACTTTGATACTACATGCATATCAGT 57.381 29.630 0.00 5.58 36.83 3.41
4633 6530 8.599055 ACTTTGATACTACATGCATATCAGTG 57.401 34.615 14.20 10.90 36.83 3.66
4634 6531 7.172190 ACTTTGATACTACATGCATATCAGTGC 59.828 37.037 14.20 8.66 45.25 4.40
4653 6550 2.093799 CACACATGCGTACGTGCG 59.906 61.111 22.15 22.15 36.57 5.34
4659 6556 1.331447 ACATGCGTACGTGCGTATAGA 59.669 47.619 26.42 7.64 35.57 1.98
4703 6600 1.079819 CCTGCCTATCCCGCATACG 60.080 63.158 0.00 0.00 35.25 3.06
4711 6608 4.918129 CCCGCATACGACGACCCG 62.918 72.222 0.00 0.00 43.93 5.28
4712 6609 4.183686 CCGCATACGACGACCCGT 62.184 66.667 0.00 0.00 45.10 5.28
4787 6684 1.380302 GTCCCACTTGCACCCTGAT 59.620 57.895 0.00 0.00 0.00 2.90
4788 6685 0.678048 GTCCCACTTGCACCCTGATC 60.678 60.000 0.00 0.00 0.00 2.92
4789 6686 0.842030 TCCCACTTGCACCCTGATCT 60.842 55.000 0.00 0.00 0.00 2.75
4790 6687 0.393537 CCCACTTGCACCCTGATCTC 60.394 60.000 0.00 0.00 0.00 2.75
4791 6688 0.617413 CCACTTGCACCCTGATCTCT 59.383 55.000 0.00 0.00 0.00 3.10
4792 6689 1.833630 CCACTTGCACCCTGATCTCTA 59.166 52.381 0.00 0.00 0.00 2.43
4793 6690 2.158986 CCACTTGCACCCTGATCTCTAG 60.159 54.545 0.00 0.00 0.00 2.43
4794 6691 1.484240 ACTTGCACCCTGATCTCTAGC 59.516 52.381 0.00 0.00 0.00 3.42
4795 6692 1.761784 CTTGCACCCTGATCTCTAGCT 59.238 52.381 0.00 0.00 0.00 3.32
4852 6749 1.634757 CTTGGCGCGCTACATGTTCA 61.635 55.000 32.29 14.95 0.00 3.18
5175 7072 5.545658 ATCAAGCTTATTGTGTACAACCG 57.454 39.130 0.00 0.00 38.86 4.44
5367 7264 3.937814 TGCAAGGTCTATGTCATTCGTT 58.062 40.909 0.00 0.00 0.00 3.85
5373 7270 3.262420 GTCTATGTCATTCGTTGGCACT 58.738 45.455 0.00 0.00 44.20 4.40
5607 7504 0.322816 GGTTGCTGATCAAGGAGCCA 60.323 55.000 12.08 0.00 45.52 4.75
5941 7839 2.032290 GTGTTGTTGGTAAGCTCCGTTC 60.032 50.000 0.00 0.00 0.00 3.95
6066 7965 7.272037 ACAAATAAATGTTTCCGTTCTGTCT 57.728 32.000 0.00 0.00 0.00 3.41
6072 7971 1.002792 GTTTCCGTTCTGTCTGCAACC 60.003 52.381 0.00 0.00 0.00 3.77
6089 7988 3.701241 CAACCGCTGTTTTGAAAGCTAA 58.299 40.909 0.00 0.00 37.27 3.09
6225 8127 8.358895 GTCCCTGAGTTCAGTAATACCTATAAC 58.641 40.741 8.23 0.00 42.27 1.89
6226 8128 8.287350 TCCCTGAGTTCAGTAATACCTATAACT 58.713 37.037 8.23 0.00 42.27 2.24
6227 8129 8.361139 CCCTGAGTTCAGTAATACCTATAACTG 58.639 40.741 8.23 0.00 42.27 3.16
6323 8614 2.695666 TGCTAATGCTCAGTAGAGGACC 59.304 50.000 8.35 0.00 45.43 4.46
6343 8634 2.224867 CCAATCTTCAGACTGGGTGGTT 60.225 50.000 1.81 0.00 37.76 3.67
6351 8642 2.232452 CAGACTGGGTGGTTCAGTAGAG 59.768 54.545 0.00 0.00 44.51 2.43
6401 8692 5.105837 TGTTGTTTATGCTGCATTGCTATGA 60.106 36.000 21.56 0.00 33.37 2.15
6425 8716 1.425412 CTGCTTGCTGAATTGTTGCC 58.575 50.000 0.00 0.00 0.00 4.52
6437 8728 5.255687 TGAATTGTTGCCACTGATGATACT 58.744 37.500 0.00 0.00 0.00 2.12
6438 8729 5.711506 TGAATTGTTGCCACTGATGATACTT 59.288 36.000 0.00 0.00 0.00 2.24
6482 8773 3.260128 ACGGGAAAGATAGTTTCCGAGTT 59.740 43.478 11.49 0.00 46.77 3.01
6540 8832 2.430694 TGTGTGTGCACTAGTTCTGACT 59.569 45.455 19.41 0.00 45.44 3.41
6542 8834 3.871594 GTGTGTGCACTAGTTCTGACTTT 59.128 43.478 19.41 0.00 42.13 2.66
6604 8896 3.503363 TGTTCAATGGCTTGTGAGATCAC 59.497 43.478 6.01 6.01 46.59 3.06
6698 8991 6.322201 CCCTTTCACCTGCATTCTATGTATTT 59.678 38.462 0.00 0.00 0.00 1.40
6810 9104 8.117870 TCTACTTATCCCAAAGTACTAGGGTA 57.882 38.462 25.00 16.70 43.31 3.69
6811 9105 8.223330 TCTACTTATCCCAAAGTACTAGGGTAG 58.777 40.741 25.00 21.73 43.31 3.18
6812 9106 6.750009 ACTTATCCCAAAGTACTAGGGTAGT 58.250 40.000 25.00 22.17 43.31 2.73
6813 9107 7.887032 ACTTATCCCAAAGTACTAGGGTAGTA 58.113 38.462 25.00 16.54 43.31 1.82
6814 9108 8.003629 ACTTATCCCAAAGTACTAGGGTAGTAG 58.996 40.741 25.00 20.07 41.59 2.57
6815 9109 5.134725 TCCCAAAGTACTAGGGTAGTAGG 57.865 47.826 25.00 6.15 41.59 3.18
6816 9110 4.078980 TCCCAAAGTACTAGGGTAGTAGGG 60.079 50.000 25.00 13.24 41.59 3.53
6817 9111 4.326450 CCCAAAGTACTAGGGTAGTAGGGT 60.326 50.000 20.31 0.00 41.59 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 6.071334 AGTCGAATCTTACTCCAAGACAATGA 60.071 38.462 0.00 0.00 46.01 2.57
29 31 4.765339 TGAGTCGAATCTTACTCCAAGACA 59.235 41.667 14.66 0.00 46.01 3.41
40 42 1.490574 CCCTCCCTGAGTCGAATCTT 58.509 55.000 14.66 0.00 0.00 2.40
42 44 1.403687 CCCCCTCCCTGAGTCGAATC 61.404 65.000 5.80 5.80 0.00 2.52
49 51 4.748798 AGCCACCCCCTCCCTGAG 62.749 72.222 0.00 0.00 0.00 3.35
52 54 3.523681 AAAGAGCCACCCCCTCCCT 62.524 63.158 0.00 0.00 0.00 4.20
53 55 2.941583 AAAGAGCCACCCCCTCCC 60.942 66.667 0.00 0.00 0.00 4.30
56 58 4.351054 CGCAAAGAGCCACCCCCT 62.351 66.667 0.00 0.00 41.38 4.79
62 64 0.107831 AACACTACCGCAAAGAGCCA 59.892 50.000 0.00 0.00 41.38 4.75
72 74 1.617755 CGCAGCAGTCAACACTACCG 61.618 60.000 0.00 0.00 0.00 4.02
89 91 1.076332 ACCAACATTAGAACGAGCGC 58.924 50.000 0.00 0.00 0.00 5.92
124 126 5.811399 AAGACAGTGTTTCGACAATTTCA 57.189 34.783 0.00 0.00 0.00 2.69
131 133 2.866762 AGAGCAAAGACAGTGTTTCGAC 59.133 45.455 0.00 0.00 0.00 4.20
180 182 4.096382 AGGTATATTTGAAAGTGGCGCAAG 59.904 41.667 10.83 0.00 43.44 4.01
193 195 5.335127 GCTTGAGCAACACAGGTATATTTG 58.665 41.667 0.00 0.00 41.59 2.32
194 196 5.567138 GCTTGAGCAACACAGGTATATTT 57.433 39.130 0.00 0.00 41.59 1.40
218 220 3.120338 ACGCAATTTGTGGTCTAATCGTG 60.120 43.478 14.06 0.00 30.87 4.35
230 232 5.238432 TGAAGTAGATGACAACGCAATTTGT 59.762 36.000 0.00 0.00 42.55 2.83
231 233 5.688823 TGAAGTAGATGACAACGCAATTTG 58.311 37.500 0.00 0.00 0.00 2.32
232 234 5.940192 TGAAGTAGATGACAACGCAATTT 57.060 34.783 0.00 0.00 0.00 1.82
238 240 7.121974 AGTGATTTTGAAGTAGATGACAACG 57.878 36.000 0.00 0.00 0.00 4.10
246 248 7.674348 TCCCTCTCTAAGTGATTTTGAAGTAGA 59.326 37.037 0.00 0.00 0.00 2.59
247 249 7.841956 TCCCTCTCTAAGTGATTTTGAAGTAG 58.158 38.462 0.00 0.00 0.00 2.57
249 251 6.688073 TCCCTCTCTAAGTGATTTTGAAGT 57.312 37.500 0.00 0.00 0.00 3.01
250 252 7.986085 TTTCCCTCTCTAAGTGATTTTGAAG 57.014 36.000 0.00 0.00 0.00 3.02
253 255 7.148171 GGACATTTCCCTCTCTAAGTGATTTTG 60.148 40.741 0.00 0.00 35.57 2.44
254 256 6.887002 GGACATTTCCCTCTCTAAGTGATTTT 59.113 38.462 0.00 0.00 35.57 1.82
255 257 6.216456 AGGACATTTCCCTCTCTAAGTGATTT 59.784 38.462 0.00 0.00 44.10 2.17
256 258 5.728741 AGGACATTTCCCTCTCTAAGTGATT 59.271 40.000 0.00 0.00 44.10 2.57
257 259 5.284582 AGGACATTTCCCTCTCTAAGTGAT 58.715 41.667 0.00 0.00 44.10 3.06
258 260 4.689062 AGGACATTTCCCTCTCTAAGTGA 58.311 43.478 0.00 0.00 44.10 3.41
259 261 5.428184 AAGGACATTTCCCTCTCTAAGTG 57.572 43.478 0.00 0.00 44.10 3.16
260 262 5.337652 CGAAAGGACATTTCCCTCTCTAAGT 60.338 44.000 6.98 0.00 44.10 2.24
261 263 5.112686 CGAAAGGACATTTCCCTCTCTAAG 58.887 45.833 6.98 0.00 44.10 2.18
263 265 4.094476 ACGAAAGGACATTTCCCTCTCTA 58.906 43.478 6.98 0.00 44.10 2.43
264 266 2.907042 ACGAAAGGACATTTCCCTCTCT 59.093 45.455 6.98 0.00 44.10 3.10
265 267 3.263261 GACGAAAGGACATTTCCCTCTC 58.737 50.000 6.98 0.00 44.10 3.20
266 268 2.353803 CGACGAAAGGACATTTCCCTCT 60.354 50.000 6.98 0.00 44.10 3.69
271 273 0.094730 CGCCGACGAAAGGACATTTC 59.905 55.000 2.47 2.47 43.93 2.17
284 286 2.096909 CCATCAAACGAATATCGCCGAC 60.097 50.000 0.00 0.00 45.12 4.79
288 290 2.480419 CCTCCCATCAAACGAATATCGC 59.520 50.000 0.00 0.00 45.12 4.58
290 292 4.991687 GTCTCCTCCCATCAAACGAATATC 59.008 45.833 0.00 0.00 0.00 1.63
306 308 2.035632 AGTCGATGGGAATGTCTCCTC 58.964 52.381 0.00 0.00 44.68 3.71
317 319 8.833231 AACAAAGTCATAATATAGTCGATGGG 57.167 34.615 0.00 0.00 0.00 4.00
355 357 3.258372 TCAAGATACTGACCCGGCATATC 59.742 47.826 0.00 0.00 0.00 1.63
361 363 2.546795 GCATCTCAAGATACTGACCCGG 60.547 54.545 0.00 0.00 32.63 5.73
376 378 3.986572 CACCATATCTTCGTGAGCATCTC 59.013 47.826 0.00 0.00 34.92 2.75
378 380 2.478134 GCACCATATCTTCGTGAGCATC 59.522 50.000 0.00 0.00 0.00 3.91
380 382 1.802508 CGCACCATATCTTCGTGAGCA 60.803 52.381 0.00 0.00 0.00 4.26
382 384 0.855349 GCGCACCATATCTTCGTGAG 59.145 55.000 0.30 0.00 0.00 3.51
383 385 0.869880 CGCGCACCATATCTTCGTGA 60.870 55.000 8.75 0.00 33.11 4.35
384 386 1.145759 ACGCGCACCATATCTTCGTG 61.146 55.000 5.73 0.00 36.81 4.35
385 387 0.382873 TACGCGCACCATATCTTCGT 59.617 50.000 5.73 0.00 0.00 3.85
386 388 1.386748 CATACGCGCACCATATCTTCG 59.613 52.381 5.73 0.00 0.00 3.79
395 399 2.598000 TAAAAACACATACGCGCACC 57.402 45.000 5.73 0.00 0.00 5.01
396 400 5.170625 CCATTATAAAAACACATACGCGCAC 59.829 40.000 5.73 0.00 0.00 5.34
399 403 5.812652 ACCCATTATAAAAACACATACGCG 58.187 37.500 3.53 3.53 0.00 6.01
417 421 2.637382 TCACACAGACACACATACCCAT 59.363 45.455 0.00 0.00 0.00 4.00
423 427 2.038164 AGATGCTCACACAGACACACAT 59.962 45.455 0.00 0.00 0.00 3.21
424 428 1.413812 AGATGCTCACACAGACACACA 59.586 47.619 0.00 0.00 0.00 3.72
429 433 0.528017 TCGGAGATGCTCACACAGAC 59.472 55.000 0.00 0.00 31.08 3.51
431 435 1.998315 CTTTCGGAGATGCTCACACAG 59.002 52.381 0.00 0.00 35.04 3.66
468 477 2.772077 TTATACACTTCCTTGCCGCA 57.228 45.000 0.00 0.00 0.00 5.69
492 501 6.147164 GGATCTGTGACACTTTTCATCGTAAA 59.853 38.462 7.20 0.00 0.00 2.01
493 502 5.637810 GGATCTGTGACACTTTTCATCGTAA 59.362 40.000 7.20 0.00 0.00 3.18
495 504 3.997021 GGATCTGTGACACTTTTCATCGT 59.003 43.478 7.20 0.00 0.00 3.73
496 505 3.996363 TGGATCTGTGACACTTTTCATCG 59.004 43.478 7.20 0.00 0.00 3.84
497 506 4.999950 ACTGGATCTGTGACACTTTTCATC 59.000 41.667 7.20 1.54 0.00 2.92
504 513 3.306088 CCGTTTACTGGATCTGTGACACT 60.306 47.826 7.20 0.00 0.00 3.55
505 514 2.993899 CCGTTTACTGGATCTGTGACAC 59.006 50.000 0.00 0.00 0.00 3.67
509 518 3.262420 CCTTCCGTTTACTGGATCTGTG 58.738 50.000 0.00 0.00 34.91 3.66
510 519 2.236395 CCCTTCCGTTTACTGGATCTGT 59.764 50.000 0.00 0.00 34.91 3.41
512 521 1.838077 CCCCTTCCGTTTACTGGATCT 59.162 52.381 0.00 0.00 34.91 2.75
535 544 3.879892 GGCTTGAGTGAAAGTGAAGACTT 59.120 43.478 0.00 0.00 44.79 3.01
536 545 3.471680 GGCTTGAGTGAAAGTGAAGACT 58.528 45.455 0.00 0.00 35.43 3.24
537 546 2.550180 GGGCTTGAGTGAAAGTGAAGAC 59.450 50.000 0.00 0.00 37.84 3.01
538 547 2.806745 CGGGCTTGAGTGAAAGTGAAGA 60.807 50.000 0.00 0.00 31.66 2.87
539 548 1.532868 CGGGCTTGAGTGAAAGTGAAG 59.467 52.381 0.00 0.00 33.31 3.02
541 550 0.250295 CCGGGCTTGAGTGAAAGTGA 60.250 55.000 0.00 0.00 0.00 3.41
705 1607 3.330720 GTGGGAGTGGGGAGGGTG 61.331 72.222 0.00 0.00 0.00 4.61
987 1889 3.512516 GCCATCGCAACAGGGAGC 61.513 66.667 0.00 0.00 34.03 4.70
1152 2054 2.361610 GTGGCCACATCACCTGGG 60.362 66.667 31.23 0.00 0.00 4.45
1215 2117 1.284982 CGTCCAGTTTCACAGAGCCG 61.285 60.000 0.00 0.00 0.00 5.52
1239 2141 0.102120 AGCTCTTCTCCGCATCTTCG 59.898 55.000 0.00 0.00 0.00 3.79
1245 2147 3.064945 AGCGAGCTCTTCTCCGCA 61.065 61.111 16.23 0.00 40.92 5.69
1248 2150 2.581953 CGCAGCGAGCTCTTCTCC 60.582 66.667 9.98 0.00 42.61 3.71
1266 2168 0.397816 AGCTATCCTTGACGCTCCCT 60.398 55.000 0.00 0.00 0.00 4.20
1287 2189 0.163788 CGCTGTACTTGGCAGAAACG 59.836 55.000 0.00 0.00 36.12 3.60
1301 2203 4.908687 TGCTTGCACCGTCGCTGT 62.909 61.111 0.00 0.00 0.00 4.40
1311 2213 1.457823 CCTTTGTCAGGCTGCTTGCA 61.458 55.000 10.34 5.89 45.15 4.08
1413 2315 3.055591 GGTGCTATCATCACTGACATCG 58.944 50.000 0.00 0.00 33.22 3.84
1593 2495 0.243907 TCGTGCCACTAAGCTCTGAC 59.756 55.000 0.00 0.00 0.00 3.51
1674 2576 0.251634 CCCTTTCAGTCTGGGCTCTC 59.748 60.000 0.00 0.00 33.88 3.20
1710 2612 0.909623 TCGGAAGGAAAGGATGGTCC 59.090 55.000 0.00 0.00 36.58 4.46
1722 2624 1.071071 TGGGTGTACAAAGTCGGAAGG 59.929 52.381 0.00 0.00 0.00 3.46
1794 2696 0.108774 GCCTTAGGGTATGCAGGTCC 59.891 60.000 0.00 0.00 34.45 4.46
1818 2720 2.808906 GGAAATACTTCCCAGGCTGT 57.191 50.000 14.43 0.00 44.91 4.40
2170 3089 8.548880 TGCTAACAGTAATAGATAAGTTCCCT 57.451 34.615 0.00 0.00 0.00 4.20
2179 3098 8.400947 CAACATTGCTTGCTAACAGTAATAGAT 58.599 33.333 0.00 0.00 0.00 1.98
2198 3117 7.535940 CAGCAGCAATTAAAATTTCCAACATTG 59.464 33.333 0.00 0.00 0.00 2.82
2290 3447 4.473196 TGCCTACAGATTTTGTGATCCCTA 59.527 41.667 0.00 0.00 41.10 3.53
2311 3468 4.330740 ACCAACGACAAATAATACGTGC 57.669 40.909 0.00 0.00 38.92 5.34
2512 3669 4.115516 ACTACTCAGATAATGCAAGCACG 58.884 43.478 0.00 0.00 0.00 5.34
2678 3835 0.036483 TGGACATGGATGTGTGGTCG 60.036 55.000 0.00 0.00 41.95 4.79
2722 3879 0.248094 GCGCTGAGAAATTTACGCCC 60.248 55.000 0.00 0.00 40.43 6.13
2910 4067 3.745975 CACTACTTTTGCTGAACGGATCA 59.254 43.478 0.00 0.00 36.38 2.92
2975 4132 5.023533 TCCTGAGAACAAGGCATACATAC 57.976 43.478 0.00 0.00 0.00 2.39
3073 4230 7.759489 AGACTTCAAGTACATTGCCATAAAA 57.241 32.000 0.00 0.00 38.89 1.52
3125 4283 7.439655 AGAAAACACTAGTCTCTCATGAACAAC 59.560 37.037 0.00 0.00 0.00 3.32
3194 4352 3.507233 CCACTCCAAAGCAAGCTTCATTA 59.493 43.478 7.88 0.00 34.84 1.90
3478 4646 6.854091 AGACCCTAGTTAGTACCTTGAAAG 57.146 41.667 0.00 0.00 0.00 2.62
3488 4656 3.245875 TGTTGCCCTAGACCCTAGTTAGT 60.246 47.826 0.00 0.00 0.00 2.24
3489 4657 3.371965 TGTTGCCCTAGACCCTAGTTAG 58.628 50.000 0.00 0.00 0.00 2.34
3490 4658 3.478175 TGTTGCCCTAGACCCTAGTTA 57.522 47.619 0.00 0.00 0.00 2.24
3491 4659 2.337359 TGTTGCCCTAGACCCTAGTT 57.663 50.000 0.00 0.00 0.00 2.24
3512 4680 9.089601 CAATTAAGATTTGTAATTGAGCATGCA 57.910 29.630 21.98 0.00 45.58 3.96
3566 4734 2.501723 GTCAATAGGGCAGAAGGACAGA 59.498 50.000 0.00 0.00 0.00 3.41
3598 4766 8.783093 TCAGACATAATAAGGAACAACAACAAG 58.217 33.333 0.00 0.00 0.00 3.16
3637 4805 7.882517 CGAAAAACGTCTTACATTATGGGACAG 60.883 40.741 12.60 9.07 38.61 3.51
3638 4806 6.128499 CGAAAAACGTCTTACATTATGGGACA 60.128 38.462 12.60 0.00 39.32 4.02
3639 4807 6.091169 TCGAAAAACGTCTTACATTATGGGAC 59.909 38.462 0.00 1.75 43.13 4.46
3640 4808 6.091169 GTCGAAAAACGTCTTACATTATGGGA 59.909 38.462 0.00 0.00 43.13 4.37
3641 4809 6.091713 AGTCGAAAAACGTCTTACATTATGGG 59.908 38.462 0.00 0.00 43.13 4.00
3642 4810 7.057149 AGTCGAAAAACGTCTTACATTATGG 57.943 36.000 0.00 0.00 43.13 2.74
3643 4811 7.950236 AGAGTCGAAAAACGTCTTACATTATG 58.050 34.615 0.00 0.00 40.02 1.90
3644 4812 9.630098 TTAGAGTCGAAAAACGTCTTACATTAT 57.370 29.630 0.00 0.00 40.02 1.28
3645 4813 9.630098 ATTAGAGTCGAAAAACGTCTTACATTA 57.370 29.630 0.00 0.00 40.02 1.90
3646 4814 7.935338 TTAGAGTCGAAAAACGTCTTACATT 57.065 32.000 0.00 0.00 40.02 2.71
3647 4815 7.597743 ACATTAGAGTCGAAAAACGTCTTACAT 59.402 33.333 0.00 0.00 40.02 2.29
3648 4816 6.919662 ACATTAGAGTCGAAAAACGTCTTACA 59.080 34.615 0.00 0.00 40.02 2.41
3649 4817 7.330720 ACATTAGAGTCGAAAAACGTCTTAC 57.669 36.000 0.00 0.00 40.02 2.34
3650 4818 8.292448 ACTACATTAGAGTCGAAAAACGTCTTA 58.708 33.333 0.00 0.00 40.02 2.10
3651 4819 7.114529 CACTACATTAGAGTCGAAAAACGTCTT 59.885 37.037 0.00 0.00 40.02 3.01
3652 4820 6.581542 CACTACATTAGAGTCGAAAAACGTCT 59.418 38.462 0.00 0.00 42.23 4.18
3653 4821 6.361748 ACACTACATTAGAGTCGAAAAACGTC 59.638 38.462 0.00 0.00 43.13 4.34
3654 4822 6.211515 ACACTACATTAGAGTCGAAAAACGT 58.788 36.000 0.00 0.00 43.13 3.99
3655 4823 6.361481 TGACACTACATTAGAGTCGAAAAACG 59.639 38.462 6.38 0.00 45.53 3.60
3656 4824 7.633361 TGACACTACATTAGAGTCGAAAAAC 57.367 36.000 6.38 0.00 45.53 2.43
3657 4825 8.651391 TTTGACACTACATTAGAGTCGAAAAA 57.349 30.769 9.67 2.67 45.53 1.94
3658 4826 8.651391 TTTTGACACTACATTAGAGTCGAAAA 57.349 30.769 17.14 14.27 46.83 2.29
3681 4849 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
3682 4850 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
3683 4851 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
3684 4852 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
3685 4853 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
3687 4855 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
3688 4856 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3689 4857 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3690 4858 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3691 4859 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3692 4860 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3693 4861 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3694 4862 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3695 4863 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3696 4864 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3697 4865 1.229131 TAGTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
3698 4866 1.133575 CATAGTACTCCCTCCGTCCCA 60.134 57.143 0.00 0.00 0.00 4.37
3699 4867 1.133544 ACATAGTACTCCCTCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
3700 4868 2.361643 ACATAGTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
3701 4869 3.814283 CACTACATAGTACTCCCTCCGTC 59.186 52.174 0.00 0.00 34.13 4.79
3702 4870 3.201708 ACACTACATAGTACTCCCTCCGT 59.798 47.826 0.00 0.00 34.13 4.69
3703 4871 3.818180 ACACTACATAGTACTCCCTCCG 58.182 50.000 0.00 0.00 34.13 4.63
3704 4872 5.939447 AGTACACTACATAGTACTCCCTCC 58.061 45.833 0.00 0.00 45.69 4.30
3764 4932 1.625818 AGGGAAACTCGCAGAAGACAT 59.374 47.619 0.00 0.00 34.09 3.06
3879 5047 7.839680 TCCATCTGTCTAACAGCAGATAATA 57.160 36.000 6.71 0.00 46.93 0.98
4007 5176 5.849357 ATGCGACATAACTGTTTTCGTAA 57.151 34.783 15.60 8.61 35.14 3.18
4057 5486 1.537776 CGGCATGAAAACAAGGCAACA 60.538 47.619 0.00 0.00 41.41 3.33
4115 5544 6.296547 CGGTCTTAATCTCTCCTATCCCTAGA 60.297 46.154 0.00 0.00 0.00 2.43
4121 5550 4.664392 TCCCGGTCTTAATCTCTCCTATC 58.336 47.826 0.00 0.00 0.00 2.08
4139 5568 3.470709 AGCACTACAATGAATCATCCCG 58.529 45.455 0.00 0.00 0.00 5.14
4238 5667 6.005198 TCGGTTGGTTAGTTCCATATTGTTT 58.995 36.000 0.00 0.00 37.33 2.83
4265 5694 2.228822 AGTTGCCACCTTTCAATTAGCG 59.771 45.455 0.00 0.00 0.00 4.26
4354 5783 3.497031 GTTTAGCGGGGCTGCGTC 61.497 66.667 0.00 0.00 40.10 5.19
4359 5788 0.255890 ATGATGTGTTTAGCGGGGCT 59.744 50.000 0.00 0.00 43.41 5.19
4416 5845 1.260561 CGCCAGGACATACGCATAAAC 59.739 52.381 0.00 0.00 0.00 2.01
4434 5863 3.113979 GCAAATTGCAGGCACCGC 61.114 61.111 13.73 0.00 44.26 5.68
4455 5884 6.035542 CGCATGCGTATAAATATACATGGACA 59.964 38.462 31.33 0.00 38.72 4.02
4475 5904 2.032894 GTCACGGGAATAATGACGCATG 60.033 50.000 0.00 0.00 33.94 4.06
4481 5910 0.537653 TGCGGTCACGGGAATAATGA 59.462 50.000 0.00 0.00 41.36 2.57
4482 5911 0.937304 CTGCGGTCACGGGAATAATG 59.063 55.000 0.00 0.00 41.36 1.90
4486 5915 2.264794 GACTGCGGTCACGGGAAT 59.735 61.111 21.02 0.00 41.75 3.01
4489 5918 4.778415 CTCGACTGCGGTCACGGG 62.778 72.222 24.91 9.39 42.21 5.28
4496 5925 2.635229 AATAGCCAGCTCGACTGCGG 62.635 60.000 0.00 0.00 45.78 5.69
4497 5926 1.211818 GAATAGCCAGCTCGACTGCG 61.212 60.000 0.00 5.00 45.78 5.18
4498 5927 0.878086 GGAATAGCCAGCTCGACTGC 60.878 60.000 0.00 0.00 45.78 4.40
4499 5928 0.249657 GGGAATAGCCAGCTCGACTG 60.250 60.000 0.00 7.72 46.77 3.51
4500 5929 1.739338 CGGGAATAGCCAGCTCGACT 61.739 60.000 0.00 0.00 38.95 4.18
4501 5930 1.300233 CGGGAATAGCCAGCTCGAC 60.300 63.158 0.00 0.00 38.95 4.20
4502 5931 1.327690 AACGGGAATAGCCAGCTCGA 61.328 55.000 0.00 0.00 38.95 4.04
4505 5934 0.618458 TTCAACGGGAATAGCCAGCT 59.382 50.000 0.00 0.00 38.95 4.24
4507 5936 1.006832 CGTTCAACGGGAATAGCCAG 58.993 55.000 0.61 0.00 38.08 4.85
4508 5937 3.146783 CGTTCAACGGGAATAGCCA 57.853 52.632 0.61 0.00 38.08 4.75
4519 5948 0.030235 GGTCAAGGCCAACGTTCAAC 59.970 55.000 5.01 0.00 0.00 3.18
4520 5949 0.106918 AGGTCAAGGCCAACGTTCAA 60.107 50.000 5.01 0.00 0.00 2.69
4521 5950 0.817634 CAGGTCAAGGCCAACGTTCA 60.818 55.000 5.01 0.00 0.00 3.18
4522 5951 0.534203 TCAGGTCAAGGCCAACGTTC 60.534 55.000 5.01 0.00 0.00 3.95
4523 5952 0.106918 TTCAGGTCAAGGCCAACGTT 60.107 50.000 5.01 0.00 0.00 3.99
4524 5953 0.535102 CTTCAGGTCAAGGCCAACGT 60.535 55.000 5.01 0.00 0.00 3.99
4525 5954 1.237285 CCTTCAGGTCAAGGCCAACG 61.237 60.000 5.01 0.00 36.72 4.10
4527 5956 0.110486 GTCCTTCAGGTCAAGGCCAA 59.890 55.000 5.01 0.00 42.63 4.52
4529 5958 1.002011 GGTCCTTCAGGTCAAGGCC 60.002 63.158 0.00 0.00 42.63 5.19
4531 5960 0.615850 GGAGGTCCTTCAGGTCAAGG 59.384 60.000 0.00 0.00 44.09 3.61
4532 5961 1.650528 AGGAGGTCCTTCAGGTCAAG 58.349 55.000 0.00 0.00 46.09 3.02
4533 5962 3.893089 AGGAGGTCCTTCAGGTCAA 57.107 52.632 0.00 0.00 46.09 3.18
4543 5972 3.364277 GTATTGCACGAGGAGGTCC 57.636 57.895 0.00 0.00 0.00 4.46
4556 5985 1.990799 TCTTCCGACTGCACGTATTG 58.009 50.000 0.00 0.00 0.00 1.90
4557 5986 2.961526 ATCTTCCGACTGCACGTATT 57.038 45.000 0.00 0.00 0.00 1.89
4558 5987 3.211865 TCTATCTTCCGACTGCACGTAT 58.788 45.455 0.00 0.00 0.00 3.06
4560 5989 1.460504 TCTATCTTCCGACTGCACGT 58.539 50.000 0.00 0.00 0.00 4.49
4561 5990 2.561733 TTCTATCTTCCGACTGCACG 57.438 50.000 0.00 0.00 0.00 5.34
4562 5991 6.216569 TGATATTTCTATCTTCCGACTGCAC 58.783 40.000 0.00 0.00 35.69 4.57
4563 5992 6.405278 TGATATTTCTATCTTCCGACTGCA 57.595 37.500 0.00 0.00 35.69 4.41
4564 5993 5.347364 GCTGATATTTCTATCTTCCGACTGC 59.653 44.000 0.00 0.00 35.69 4.40
4566 5995 6.348950 CGAGCTGATATTTCTATCTTCCGACT 60.349 42.308 0.00 0.00 35.69 4.18
4567 5996 5.797934 CGAGCTGATATTTCTATCTTCCGAC 59.202 44.000 0.00 0.00 35.69 4.79
4568 5997 5.473846 ACGAGCTGATATTTCTATCTTCCGA 59.526 40.000 0.00 0.00 35.69 4.55
4569 5998 5.704888 ACGAGCTGATATTTCTATCTTCCG 58.295 41.667 0.00 0.00 35.69 4.30
4570 5999 8.462811 TGATACGAGCTGATATTTCTATCTTCC 58.537 37.037 0.00 0.00 35.69 3.46
4571 6000 9.502145 CTGATACGAGCTGATATTTCTATCTTC 57.498 37.037 0.00 0.00 35.69 2.87
4572 6001 9.019656 ACTGATACGAGCTGATATTTCTATCTT 57.980 33.333 0.00 0.00 35.69 2.40
4574 6003 7.638295 CGACTGATACGAGCTGATATTTCTATC 59.362 40.741 0.00 0.00 35.30 2.08
4575 6004 7.414651 CCGACTGATACGAGCTGATATTTCTAT 60.415 40.741 0.00 0.00 0.00 1.98
4576 6005 6.128254 CCGACTGATACGAGCTGATATTTCTA 60.128 42.308 0.00 0.00 0.00 2.10
4577 6006 5.335269 CCGACTGATACGAGCTGATATTTCT 60.335 44.000 0.00 0.00 0.00 2.52
4580 6009 3.821600 ACCGACTGATACGAGCTGATATT 59.178 43.478 0.00 0.00 0.00 1.28
4581 6010 3.189495 CACCGACTGATACGAGCTGATAT 59.811 47.826 0.00 0.00 0.00 1.63
4592 6489 5.462530 TCAAAGTTTCTCACCGACTGATA 57.537 39.130 0.00 0.00 0.00 2.15
4597 6494 6.154445 TGTAGTATCAAAGTTTCTCACCGAC 58.846 40.000 0.00 0.00 0.00 4.79
4602 6499 9.836864 ATATGCATGTAGTATCAAAGTTTCTCA 57.163 29.630 10.16 0.00 0.00 3.27
4606 6503 9.618890 ACTGATATGCATGTAGTATCAAAGTTT 57.381 29.630 10.16 0.00 35.20 2.66
4607 6504 9.049523 CACTGATATGCATGTAGTATCAAAGTT 57.950 33.333 10.16 0.00 35.20 2.66
4608 6505 7.172190 GCACTGATATGCATGTAGTATCAAAGT 59.828 37.037 10.16 2.79 45.39 2.66
4609 6506 7.516481 GCACTGATATGCATGTAGTATCAAAG 58.484 38.462 10.16 6.45 45.39 2.77
4611 6508 5.634859 CGCACTGATATGCATGTAGTATCAA 59.365 40.000 10.16 0.00 46.47 2.57
4613 6510 4.032217 GCGCACTGATATGCATGTAGTATC 59.968 45.833 10.16 4.37 46.47 2.24
4614 6511 3.928992 GCGCACTGATATGCATGTAGTAT 59.071 43.478 10.16 0.00 46.47 2.12
4616 6513 2.138320 GCGCACTGATATGCATGTAGT 58.862 47.619 10.16 7.92 46.47 2.73
4617 6514 2.096565 GTGCGCACTGATATGCATGTAG 60.097 50.000 32.55 7.26 46.47 2.74
4618 6515 1.866601 GTGCGCACTGATATGCATGTA 59.133 47.619 32.55 0.00 46.47 2.29
4620 6517 0.658897 TGTGCGCACTGATATGCATG 59.341 50.000 37.59 0.00 46.47 4.06
4621 6518 0.659427 GTGTGCGCACTGATATGCAT 59.341 50.000 37.59 3.79 46.47 3.96
4622 6519 0.673022 TGTGTGCGCACTGATATGCA 60.673 50.000 37.59 21.49 46.47 3.96
4623 6520 0.659427 ATGTGTGCGCACTGATATGC 59.341 50.000 37.59 19.51 45.44 3.14
4624 6521 1.596220 GCATGTGTGCGCACTGATATG 60.596 52.381 37.59 29.97 45.44 1.78
4625 6522 0.659427 GCATGTGTGCGCACTGATAT 59.341 50.000 37.59 21.13 45.44 1.63
4627 6524 2.872557 GCATGTGTGCGCACTGAT 59.127 55.556 37.59 26.27 45.44 2.90
4636 6533 2.093799 CGCACGTACGCATGTGTG 59.906 61.111 22.00 8.98 43.63 3.82
4637 6534 0.457166 ATACGCACGTACGCATGTGT 60.457 50.000 23.05 23.05 42.66 3.72
4638 6535 1.446833 CTATACGCACGTACGCATGTG 59.553 52.381 16.72 15.93 43.41 3.21
4639 6536 1.331447 TCTATACGCACGTACGCATGT 59.669 47.619 16.72 13.25 36.19 3.21
4640 6537 2.026915 TCTATACGCACGTACGCATG 57.973 50.000 16.72 8.44 36.19 4.06
4641 6538 2.581637 CATCTATACGCACGTACGCAT 58.418 47.619 16.72 3.28 36.19 4.73
4642 6539 1.334329 CCATCTATACGCACGTACGCA 60.334 52.381 16.72 0.00 36.19 5.24
4643 6540 1.324718 CCATCTATACGCACGTACGC 58.675 55.000 16.72 0.00 36.19 4.42
4644 6541 1.324718 GCCATCTATACGCACGTACG 58.675 55.000 15.01 15.01 39.50 3.67
4645 6542 1.324718 CGCCATCTATACGCACGTAC 58.675 55.000 4.84 0.00 33.01 3.67
4649 6546 2.027625 GCCCGCCATCTATACGCAC 61.028 63.158 0.00 0.00 0.00 5.34
4653 6550 1.376037 GCCAGCCCGCCATCTATAC 60.376 63.158 0.00 0.00 0.00 1.47
4690 6587 0.109873 GGTCGTCGTATGCGGGATAG 60.110 60.000 2.62 0.00 38.89 2.08
4787 6684 1.276421 GGCACAAGGTTGAGCTAGAGA 59.724 52.381 11.19 0.00 43.05 3.10
4788 6685 1.277557 AGGCACAAGGTTGAGCTAGAG 59.722 52.381 11.19 0.00 43.05 2.43
4789 6686 1.352083 AGGCACAAGGTTGAGCTAGA 58.648 50.000 11.19 0.00 43.05 2.43
4790 6687 3.201290 CATAGGCACAAGGTTGAGCTAG 58.799 50.000 11.19 0.00 43.05 3.42
4791 6688 2.092968 CCATAGGCACAAGGTTGAGCTA 60.093 50.000 11.19 3.83 43.05 3.32
4792 6689 1.340405 CCATAGGCACAAGGTTGAGCT 60.340 52.381 11.19 0.00 43.05 4.09
4793 6690 1.098050 CCATAGGCACAAGGTTGAGC 58.902 55.000 3.78 3.78 42.82 4.26
4794 6691 2.496899 ACCATAGGCACAAGGTTGAG 57.503 50.000 0.00 0.00 0.00 3.02
4795 6692 2.640332 TGTACCATAGGCACAAGGTTGA 59.360 45.455 0.00 0.00 35.62 3.18
4838 6735 0.374758 ATTGCTGAACATGTAGCGCG 59.625 50.000 14.35 0.00 42.74 6.86
5175 7072 2.570181 GCTGGCTCAATGCACACC 59.430 61.111 0.00 0.00 45.15 4.16
5367 7264 2.290832 TGCCAAGTATTCATGAGTGCCA 60.291 45.455 0.13 0.00 0.00 4.92
5373 7270 3.519107 TCTCAGGTGCCAAGTATTCATGA 59.481 43.478 0.00 0.00 0.00 3.07
5607 7504 0.108377 TGTACGCCAATCGATGCTGT 60.108 50.000 0.00 4.76 41.67 4.40
5941 7839 1.522668 TGGAGGTGAAATGAACTGCG 58.477 50.000 0.00 0.00 0.00 5.18
5992 7890 5.957771 TTGATGAGGGATTACAGCTTACT 57.042 39.130 0.00 0.00 0.00 2.24
6056 7955 2.954753 GCGGTTGCAGACAGAACGG 61.955 63.158 0.00 0.00 42.15 4.44
6066 7965 1.919918 CTTTCAAAACAGCGGTTGCA 58.080 45.000 2.10 0.00 46.23 4.08
6072 7971 5.234116 ACCAAATTTAGCTTTCAAAACAGCG 59.766 36.000 0.00 0.00 41.24 5.18
6225 8127 5.335426 GCCTGGCACAATTCATATCATACAG 60.335 44.000 15.17 0.00 38.70 2.74
6226 8128 4.520111 GCCTGGCACAATTCATATCATACA 59.480 41.667 15.17 0.00 38.70 2.29
6227 8129 4.520111 TGCCTGGCACAATTCATATCATAC 59.480 41.667 19.30 0.00 38.70 2.39
6229 8131 3.568443 TGCCTGGCACAATTCATATCAT 58.432 40.909 19.30 0.00 38.70 2.45
6232 8134 2.696707 CCTTGCCTGGCACAATTCATAT 59.303 45.455 23.30 0.00 38.71 1.78
6234 8136 0.899720 CCTTGCCTGGCACAATTCAT 59.100 50.000 23.30 0.00 38.71 2.57
6323 8614 2.867109 ACCACCCAGTCTGAAGATTG 57.133 50.000 0.00 0.00 0.00 2.67
6343 8634 0.826715 GCATGCTGGTCCTCTACTGA 59.173 55.000 11.37 0.00 0.00 3.41
6425 8716 7.412853 GCAAATCCACTAAAGTATCATCAGTG 58.587 38.462 0.00 0.00 37.06 3.66
6482 8773 2.805671 CAGAACTGTAATTCACGTGCCA 59.194 45.455 11.67 0.00 0.00 4.92
6522 8814 4.811557 AGAAAAGTCAGAACTAGTGCACAC 59.188 41.667 21.04 5.55 33.48 3.82
6523 8815 5.023533 AGAAAAGTCAGAACTAGTGCACA 57.976 39.130 21.04 4.13 33.48 4.57
6524 8816 5.332656 CGAAGAAAAGTCAGAACTAGTGCAC 60.333 44.000 9.40 9.40 33.48 4.57
6525 8817 4.745125 CGAAGAAAAGTCAGAACTAGTGCA 59.255 41.667 3.00 0.00 33.48 4.57
6526 8818 4.376514 GCGAAGAAAAGTCAGAACTAGTGC 60.377 45.833 0.00 0.00 33.48 4.40
6540 8832 1.673920 GTGAGTGGTTGGCGAAGAAAA 59.326 47.619 0.00 0.00 0.00 2.29
6542 8834 0.468226 AGTGAGTGGTTGGCGAAGAA 59.532 50.000 0.00 0.00 0.00 2.52
6698 8991 7.940688 AGGATGACAGCATTATTCATATGAACA 59.059 33.333 20.19 6.28 33.99 3.18
6708 9001 5.198965 AGAAAGCAGGATGACAGCATTATT 58.801 37.500 0.00 0.00 39.69 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.