Multiple sequence alignment - TraesCS5A01G170000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G170000 chr5A 100.000 7200 0 0 1 7200 362422046 362414847 0.000000e+00 13296.0
1 TraesCS5A01G170000 chr5B 91.464 2636 143 33 4585 7200 308925228 308922655 0.000000e+00 3546.0
2 TraesCS5A01G170000 chr5B 86.055 1843 112 41 1679 3484 308928085 308926351 0.000000e+00 1845.0
3 TraesCS5A01G170000 chr5B 95.713 1073 37 6 3519 4585 308926350 308925281 0.000000e+00 1718.0
4 TraesCS5A01G170000 chr5B 86.944 1034 68 33 617 1621 308929092 308928097 0.000000e+00 1099.0
5 TraesCS5A01G170000 chr5B 89.474 171 12 4 454 618 308929583 308929413 2.040000e-50 211.0
6 TraesCS5A01G170000 chr5D 89.474 2185 136 35 1673 3818 273120069 273117940 0.000000e+00 2675.0
7 TraesCS5A01G170000 chr5D 92.135 1920 78 26 5305 7188 273116314 273114432 0.000000e+00 2641.0
8 TraesCS5A01G170000 chr5D 91.253 1269 60 17 384 1619 273121325 273120075 0.000000e+00 1681.0
9 TraesCS5A01G170000 chr5D 96.525 777 21 3 3815 4585 273117888 273117112 0.000000e+00 1280.0
10 TraesCS5A01G170000 chr5D 92.194 743 45 9 4585 5322 273117059 273116325 0.000000e+00 1038.0
11 TraesCS5A01G170000 chr5D 88.889 171 18 1 4 173 273121714 273121544 7.320000e-50 209.0
12 TraesCS5A01G170000 chr6D 92.208 77 6 0 257 333 380795668 380795592 7.640000e-20 110.0
13 TraesCS5A01G170000 chr6D 86.667 75 9 1 259 332 456582653 456582579 1.660000e-11 82.4
14 TraesCS5A01G170000 chr3B 92.857 42 0 2 437 477 687075900 687075939 2.810000e-04 58.4
15 TraesCS5A01G170000 chr2B 100.000 28 0 0 452 479 339304145 339304118 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G170000 chr5A 362414847 362422046 7199 True 13296.000000 13296 100.000 1 7200 1 chr5A.!!$R1 7199
1 TraesCS5A01G170000 chr5B 308922655 308929583 6928 True 1683.800000 3546 89.930 454 7200 5 chr5B.!!$R1 6746
2 TraesCS5A01G170000 chr5D 273114432 273121714 7282 True 1587.333333 2675 91.745 4 7188 6 chr5D.!!$R1 7184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 224 0.178068 GCTGTGTCGGTCCATATGGT 59.822 55.000 21.28 0.0 36.34 3.55 F
813 1276 0.300491 CCACACATACGCACATACGC 59.700 55.000 0.00 0.0 36.19 4.42 F
1453 1950 0.102481 GATTCGCCCTACTTCGCTGA 59.898 55.000 0.00 0.0 0.00 4.26 F
2498 3036 0.048117 TAGGGGAGAGAGAGAGGGGT 59.952 60.000 0.00 0.0 0.00 4.95 F
2501 3039 0.185175 GGGAGAGAGAGAGGGGTCTC 59.815 65.000 0.00 0.0 43.03 3.36 F
2565 3103 0.386100 CCTGACGAGTATCATCGCCG 60.386 60.000 0.00 0.0 46.60 6.46 F
3096 3641 1.475280 TGACAGCGTTCTAGCCGTAAT 59.525 47.619 4.02 0.0 38.01 1.89 F
3379 3939 2.196295 GCTGACTAGCTGGTTACGAG 57.804 55.000 3.47 0.0 46.57 4.18 F
4594 5274 2.245159 CTGCTCACAGTTGTCTTGGA 57.755 50.000 0.00 0.0 39.22 3.53 F
4823 5503 0.114168 TGTTGCTTAATGGGGCCAGT 59.886 50.000 4.39 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1127 1604 0.673644 AGCGAAACAGGAATGGACGG 60.674 55.000 0.00 0.00 0.00 4.79 R
2491 3029 0.984230 TCGCAAATTGAGACCCCTCT 59.016 50.000 0.00 0.00 40.10 3.69 R
3026 3571 1.164411 TCCATTAGCTGCACCAAACG 58.836 50.000 1.02 0.00 0.00 3.60 R
3510 4072 2.355010 ATTAGAGCAAGGGCATCACC 57.645 50.000 0.00 0.00 44.61 4.02 R
4356 4983 4.154015 TCAAAGTTCATACCACTCATTGCG 59.846 41.667 0.00 0.00 0.00 4.85 R
4511 5138 5.587388 TGGACCACTAGTTCTAATAACGG 57.413 43.478 0.00 0.00 0.00 4.44 R
4768 5448 0.760567 ACCAGCTGACACCTCACTCA 60.761 55.000 17.39 0.00 0.00 3.41 R
4802 5482 1.137479 CTGGCCCCATTAAGCAACATG 59.863 52.381 0.00 0.00 0.00 3.21 R
5875 6596 0.178068 AGTCCATAACCTGCGCGATT 59.822 50.000 12.10 0.00 0.00 3.34 R
6738 7485 0.322816 TCAGTGCTTGGCCAAGATCC 60.323 55.000 42.96 28.97 40.79 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.386654 CAATTTTGGTCCTTTTAGCGTGTAT 58.613 36.000 0.00 0.00 0.00 2.29
27 28 5.365403 TTTGGTCCTTTTAGCGTGTATTG 57.635 39.130 0.00 0.00 0.00 1.90
31 32 5.996513 TGGTCCTTTTAGCGTGTATTGTTTA 59.003 36.000 0.00 0.00 0.00 2.01
75 76 2.879233 AACGGTGTCATGTCGGGCT 61.879 57.895 0.00 0.00 0.00 5.19
105 107 3.945434 CGCGTGCCATGCTGATCC 61.945 66.667 7.39 0.00 0.00 3.36
121 123 3.333219 CCCTTCTGAGCCCAGGCA 61.333 66.667 12.03 0.00 44.88 4.75
125 127 1.078214 TTCTGAGCCCAGGCATTCG 60.078 57.895 12.03 0.00 44.88 3.34
126 128 2.515523 CTGAGCCCAGGCATTCGG 60.516 66.667 12.03 1.78 44.88 4.30
154 156 4.437659 GCATCGTGCGACCCTTTTATAAAA 60.438 41.667 10.16 10.16 31.71 1.52
180 182 2.877097 ACATAGACCATGTTGTGCCA 57.123 45.000 0.00 0.00 46.01 4.92
181 183 3.153369 ACATAGACCATGTTGTGCCAA 57.847 42.857 0.00 0.00 46.01 4.52
182 184 3.084039 ACATAGACCATGTTGTGCCAAG 58.916 45.455 0.00 0.00 46.01 3.61
183 185 1.533625 TAGACCATGTTGTGCCAAGC 58.466 50.000 0.00 0.00 0.00 4.01
184 186 1.181098 AGACCATGTTGTGCCAAGCC 61.181 55.000 0.00 0.00 0.00 4.35
185 187 1.457267 ACCATGTTGTGCCAAGCCA 60.457 52.632 0.00 0.00 0.00 4.75
186 188 0.832983 ACCATGTTGTGCCAAGCCAT 60.833 50.000 0.00 0.00 0.00 4.40
187 189 0.322322 CCATGTTGTGCCAAGCCATT 59.678 50.000 0.00 0.00 0.00 3.16
188 190 1.270947 CCATGTTGTGCCAAGCCATTT 60.271 47.619 0.00 0.00 0.00 2.32
189 191 2.496111 CATGTTGTGCCAAGCCATTTT 58.504 42.857 0.00 0.00 0.00 1.82
190 192 1.950828 TGTTGTGCCAAGCCATTTTG 58.049 45.000 0.00 0.00 0.00 2.44
191 193 1.209019 TGTTGTGCCAAGCCATTTTGT 59.791 42.857 0.00 0.00 0.00 2.83
192 194 2.432146 TGTTGTGCCAAGCCATTTTGTA 59.568 40.909 0.00 0.00 0.00 2.41
193 195 3.059166 GTTGTGCCAAGCCATTTTGTAG 58.941 45.455 0.00 0.00 0.00 2.74
194 196 1.617850 TGTGCCAAGCCATTTTGTAGG 59.382 47.619 0.00 0.00 0.00 3.18
195 197 1.618343 GTGCCAAGCCATTTTGTAGGT 59.382 47.619 0.00 0.00 0.00 3.08
196 198 1.617850 TGCCAAGCCATTTTGTAGGTG 59.382 47.619 0.00 0.00 0.00 4.00
197 199 1.066929 GCCAAGCCATTTTGTAGGTGG 60.067 52.381 0.00 0.00 36.09 4.61
198 200 1.550072 CCAAGCCATTTTGTAGGTGGG 59.450 52.381 0.00 0.00 33.58 4.61
199 201 2.247358 CAAGCCATTTTGTAGGTGGGT 58.753 47.619 0.00 0.00 44.97 4.51
200 202 2.215942 AGCCATTTTGTAGGTGGGTC 57.784 50.000 0.00 0.00 39.36 4.46
201 203 0.808755 GCCATTTTGTAGGTGGGTCG 59.191 55.000 0.00 0.00 33.58 4.79
202 204 1.459450 CCATTTTGTAGGTGGGTCGG 58.541 55.000 0.00 0.00 0.00 4.79
203 205 1.459450 CATTTTGTAGGTGGGTCGGG 58.541 55.000 0.00 0.00 0.00 5.14
204 206 0.323087 ATTTTGTAGGTGGGTCGGGC 60.323 55.000 0.00 0.00 0.00 6.13
205 207 1.420532 TTTTGTAGGTGGGTCGGGCT 61.421 55.000 0.00 0.00 0.00 5.19
206 208 2.119484 TTTGTAGGTGGGTCGGGCTG 62.119 60.000 0.00 0.00 0.00 4.85
207 209 3.001406 GTAGGTGGGTCGGGCTGT 61.001 66.667 0.00 0.00 0.00 4.40
208 210 3.000819 TAGGTGGGTCGGGCTGTG 61.001 66.667 0.00 0.00 0.00 3.66
209 211 3.839046 TAGGTGGGTCGGGCTGTGT 62.839 63.158 0.00 0.00 0.00 3.72
210 212 4.699522 GGTGGGTCGGGCTGTGTC 62.700 72.222 0.00 0.00 0.00 3.67
214 216 4.736896 GGTCGGGCTGTGTCGGTC 62.737 72.222 0.00 0.00 0.00 4.79
215 217 4.736896 GTCGGGCTGTGTCGGTCC 62.737 72.222 0.00 0.00 0.00 4.46
217 219 4.082523 CGGGCTGTGTCGGTCCAT 62.083 66.667 0.21 0.00 33.39 3.41
218 220 2.717044 CGGGCTGTGTCGGTCCATA 61.717 63.158 0.21 0.00 33.39 2.74
219 221 1.830145 GGGCTGTGTCGGTCCATAT 59.170 57.895 0.00 0.00 34.10 1.78
220 222 0.532862 GGGCTGTGTCGGTCCATATG 60.533 60.000 0.00 0.00 34.10 1.78
221 223 0.532862 GGCTGTGTCGGTCCATATGG 60.533 60.000 16.25 16.25 0.00 2.74
222 224 0.178068 GCTGTGTCGGTCCATATGGT 59.822 55.000 21.28 0.00 36.34 3.55
223 225 1.806623 GCTGTGTCGGTCCATATGGTC 60.807 57.143 21.28 15.65 36.34 4.02
224 226 1.480545 CTGTGTCGGTCCATATGGTCA 59.519 52.381 21.28 10.87 36.34 4.02
225 227 1.480545 TGTGTCGGTCCATATGGTCAG 59.519 52.381 21.28 16.15 36.34 3.51
226 228 1.754803 GTGTCGGTCCATATGGTCAGA 59.245 52.381 21.28 18.15 36.34 3.27
227 229 2.365617 GTGTCGGTCCATATGGTCAGAT 59.634 50.000 21.28 0.00 31.69 2.90
228 230 2.628178 TGTCGGTCCATATGGTCAGATC 59.372 50.000 21.28 15.06 31.69 2.75
229 231 2.894126 GTCGGTCCATATGGTCAGATCT 59.106 50.000 21.28 0.00 31.69 2.75
230 232 4.079970 GTCGGTCCATATGGTCAGATCTA 58.920 47.826 21.28 0.00 31.69 1.98
231 233 4.707448 GTCGGTCCATATGGTCAGATCTAT 59.293 45.833 21.28 0.00 31.69 1.98
232 234 4.950475 TCGGTCCATATGGTCAGATCTATC 59.050 45.833 21.28 0.00 36.34 2.08
233 235 4.952957 CGGTCCATATGGTCAGATCTATCT 59.047 45.833 21.28 0.00 35.36 1.98
234 236 5.067153 CGGTCCATATGGTCAGATCTATCTC 59.933 48.000 21.28 0.00 33.77 2.75
235 237 5.954752 GGTCCATATGGTCAGATCTATCTCA 59.045 44.000 21.28 0.00 33.77 3.27
236 238 6.438741 GGTCCATATGGTCAGATCTATCTCAA 59.561 42.308 21.28 0.00 33.77 3.02
237 239 7.038729 GGTCCATATGGTCAGATCTATCTCAAA 60.039 40.741 21.28 0.00 33.77 2.69
238 240 8.370940 GTCCATATGGTCAGATCTATCTCAAAA 58.629 37.037 21.28 0.00 33.77 2.44
239 241 8.370940 TCCATATGGTCAGATCTATCTCAAAAC 58.629 37.037 21.28 0.00 33.77 2.43
240 242 8.152898 CCATATGGTCAGATCTATCTCAAAACA 58.847 37.037 14.09 0.00 34.22 2.83
241 243 9.722184 CATATGGTCAGATCTATCTCAAAACAT 57.278 33.333 0.00 0.00 34.22 2.71
245 247 9.551734 TGGTCAGATCTATCTCAAAACATAATG 57.448 33.333 0.00 0.00 34.22 1.90
246 248 8.502387 GGTCAGATCTATCTCAAAACATAATGC 58.498 37.037 0.00 0.00 34.22 3.56
247 249 9.049523 GTCAGATCTATCTCAAAACATAATGCA 57.950 33.333 0.00 0.00 34.22 3.96
248 250 9.617523 TCAGATCTATCTCAAAACATAATGCAA 57.382 29.630 0.00 0.00 34.22 4.08
256 258 9.807649 ATCTCAAAACATAATGCAAAGTATTCC 57.192 29.630 0.00 0.00 0.00 3.01
257 259 9.023962 TCTCAAAACATAATGCAAAGTATTCCT 57.976 29.630 0.00 0.00 0.00 3.36
258 260 9.643693 CTCAAAACATAATGCAAAGTATTCCTT 57.356 29.630 0.00 0.00 33.79 3.36
259 261 9.638239 TCAAAACATAATGCAAAGTATTCCTTC 57.362 29.630 0.00 0.00 31.27 3.46
260 262 8.872845 CAAAACATAATGCAAAGTATTCCTTCC 58.127 33.333 0.00 0.00 31.27 3.46
261 263 7.961326 AACATAATGCAAAGTATTCCTTCCT 57.039 32.000 0.00 0.00 31.27 3.36
262 264 7.573968 ACATAATGCAAAGTATTCCTTCCTC 57.426 36.000 0.00 0.00 31.27 3.71
263 265 6.547510 ACATAATGCAAAGTATTCCTTCCTCC 59.452 38.462 0.00 0.00 31.27 4.30
264 266 4.870021 ATGCAAAGTATTCCTTCCTCCT 57.130 40.909 0.00 0.00 31.27 3.69
265 267 4.657814 TGCAAAGTATTCCTTCCTCCTT 57.342 40.909 0.00 0.00 31.27 3.36
266 268 4.589908 TGCAAAGTATTCCTTCCTCCTTC 58.410 43.478 0.00 0.00 31.27 3.46
267 269 4.289672 TGCAAAGTATTCCTTCCTCCTTCT 59.710 41.667 0.00 0.00 31.27 2.85
268 270 4.878971 GCAAAGTATTCCTTCCTCCTTCTC 59.121 45.833 0.00 0.00 31.27 2.87
269 271 5.571658 GCAAAGTATTCCTTCCTCCTTCTCA 60.572 44.000 0.00 0.00 31.27 3.27
270 272 6.476378 CAAAGTATTCCTTCCTCCTTCTCAA 58.524 40.000 0.00 0.00 31.27 3.02
271 273 6.704056 AAGTATTCCTTCCTCCTTCTCAAA 57.296 37.500 0.00 0.00 0.00 2.69
272 274 6.704056 AGTATTCCTTCCTCCTTCTCAAAA 57.296 37.500 0.00 0.00 0.00 2.44
273 275 7.277405 AGTATTCCTTCCTCCTTCTCAAAAT 57.723 36.000 0.00 0.00 0.00 1.82
274 276 8.393959 AGTATTCCTTCCTCCTTCTCAAAATA 57.606 34.615 0.00 0.00 0.00 1.40
275 277 9.008584 AGTATTCCTTCCTCCTTCTCAAAATAT 57.991 33.333 0.00 0.00 0.00 1.28
278 280 9.859152 ATTCCTTCCTCCTTCTCAAAATATAAG 57.141 33.333 0.00 0.00 0.00 1.73
279 281 7.806180 TCCTTCCTCCTTCTCAAAATATAAGG 58.194 38.462 0.00 0.00 39.93 2.69
280 282 6.488344 CCTTCCTCCTTCTCAAAATATAAGGC 59.512 42.308 0.00 0.00 38.70 4.35
281 283 5.611374 TCCTCCTTCTCAAAATATAAGGCG 58.389 41.667 0.00 0.00 38.70 5.52
282 284 4.214332 CCTCCTTCTCAAAATATAAGGCGC 59.786 45.833 0.00 0.00 38.70 6.53
283 285 3.807622 TCCTTCTCAAAATATAAGGCGCG 59.192 43.478 0.00 0.00 38.70 6.86
284 286 3.560068 CCTTCTCAAAATATAAGGCGCGT 59.440 43.478 8.43 0.00 32.66 6.01
285 287 4.035208 CCTTCTCAAAATATAAGGCGCGTT 59.965 41.667 20.19 20.19 32.66 4.84
286 288 5.448632 CCTTCTCAAAATATAAGGCGCGTTT 60.449 40.000 21.55 10.82 32.66 3.60
287 289 4.904116 TCTCAAAATATAAGGCGCGTTTG 58.096 39.130 21.55 11.79 0.00 2.93
288 290 4.632251 TCTCAAAATATAAGGCGCGTTTGA 59.368 37.500 21.55 15.32 34.69 2.69
289 291 5.295787 TCTCAAAATATAAGGCGCGTTTGAT 59.704 36.000 21.55 11.70 35.21 2.57
294 296 3.569250 ATAAGGCGCGTTTGATTTTGT 57.431 38.095 21.55 0.00 0.00 2.83
296 298 2.325509 AGGCGCGTTTGATTTTGTAC 57.674 45.000 8.43 0.00 0.00 2.90
311 313 6.372937 TGATTTTGTACGGTCTTTGATGCATA 59.627 34.615 0.00 0.00 0.00 3.14
312 314 6.561737 TTTTGTACGGTCTTTGATGCATAA 57.438 33.333 0.00 0.00 0.00 1.90
313 315 5.539582 TTGTACGGTCTTTGATGCATAAC 57.460 39.130 0.00 0.00 0.00 1.89
319 321 5.415701 ACGGTCTTTGATGCATAACTTTGAT 59.584 36.000 0.00 0.00 0.00 2.57
320 322 5.967674 CGGTCTTTGATGCATAACTTTGATC 59.032 40.000 0.00 0.00 0.00 2.92
398 520 9.914834 ATTTTAGTTCCATAGGCATACACTAAA 57.085 29.630 8.71 8.71 34.82 1.85
405 527 8.995027 TCCATAGGCATACACTAAATGAAAAT 57.005 30.769 0.00 0.00 0.00 1.82
558 685 5.467705 GTGAGTTCCACGTGTTTATACTCT 58.532 41.667 15.65 1.30 35.86 3.24
563 690 3.119245 TCCACGTGTTTATACTCTGCCTC 60.119 47.826 15.65 0.00 0.00 4.70
580 707 1.071605 CTCGCAAGGTTAGACAGCAC 58.928 55.000 0.00 0.00 38.47 4.40
585 712 2.430465 CAAGGTTAGACAGCACTGCAT 58.570 47.619 3.30 0.00 0.00 3.96
604 732 2.273370 TCGGTACTAGCAGAAAAGCG 57.727 50.000 0.00 0.00 40.15 4.68
699 1151 4.539596 ACCTAAACCAAGTTAAACCCCA 57.460 40.909 0.00 0.00 0.00 4.96
716 1168 5.447624 ACCCCAAATAAACAAACGAGAAG 57.552 39.130 0.00 0.00 0.00 2.85
789 1244 4.179599 CTCCTCCCCTCCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
808 1271 1.302112 CACCCCACACATACGCACA 60.302 57.895 0.00 0.00 0.00 4.57
809 1272 0.676466 CACCCCACACATACGCACAT 60.676 55.000 0.00 0.00 0.00 3.21
810 1273 0.906066 ACCCCACACATACGCACATA 59.094 50.000 0.00 0.00 0.00 2.29
811 1274 1.295792 CCCCACACATACGCACATAC 58.704 55.000 0.00 0.00 0.00 2.39
812 1275 0.927537 CCCACACATACGCACATACG 59.072 55.000 0.00 0.00 39.50 3.06
813 1276 0.300491 CCACACATACGCACATACGC 59.700 55.000 0.00 0.00 36.19 4.42
814 1277 0.995728 CACACATACGCACATACGCA 59.004 50.000 0.00 0.00 36.19 5.24
815 1278 1.006079 CACACATACGCACATACGCAG 60.006 52.381 0.00 0.00 36.19 5.18
901 1369 5.680619 TCAAAAGGCAAACAAGACTCTCTA 58.319 37.500 0.00 0.00 0.00 2.43
969 1441 3.330720 CCCGCAAGTCTCCCCCTT 61.331 66.667 0.00 0.00 0.00 3.95
970 1442 2.269241 CCGCAAGTCTCCCCCTTC 59.731 66.667 0.00 0.00 0.00 3.46
971 1443 2.294078 CCGCAAGTCTCCCCCTTCT 61.294 63.158 0.00 0.00 0.00 2.85
1061 1533 0.805322 CTCATGGAGCAGCGTGAGTC 60.805 60.000 10.28 0.00 34.76 3.36
1063 1535 1.082679 CATGGAGCAGCGTGAGTCAG 61.083 60.000 0.00 0.00 0.00 3.51
1127 1604 0.402121 AGCACACCTTTCTTCTCCCC 59.598 55.000 0.00 0.00 0.00 4.81
1129 1606 0.321653 CACACCTTTCTTCTCCCCCG 60.322 60.000 0.00 0.00 0.00 5.73
1132 1609 1.199425 ACCTTTCTTCTCCCCCGTCC 61.199 60.000 0.00 0.00 0.00 4.79
1193 1679 2.435586 CCTGCAGTTGAGGAGCCG 60.436 66.667 13.81 0.00 31.48 5.52
1214 1700 2.027192 GCTCAAGACCACATTCCAGGTA 60.027 50.000 0.00 0.00 38.50 3.08
1303 1789 6.344500 TGTGCATAATTTCTTGTTTTGGTGT 58.656 32.000 0.00 0.00 0.00 4.16
1355 1852 1.537202 AGATTTTGCCTCTGTTGTCGC 59.463 47.619 0.00 0.00 0.00 5.19
1362 1859 3.287121 CTCTGTTGTCGCGTGCTGC 62.287 63.158 5.77 0.00 41.47 5.25
1389 1886 0.863956 TTCTGGTGGATTTTGGGGGT 59.136 50.000 0.00 0.00 0.00 4.95
1418 1915 5.599732 TGCTCAAGCTTTTTATTTTGCTCA 58.400 33.333 0.00 0.00 42.66 4.26
1453 1950 0.102481 GATTCGCCCTACTTCGCTGA 59.898 55.000 0.00 0.00 0.00 4.26
1498 1995 3.032017 TCTTGCAGGTTCTCTTCTTCG 57.968 47.619 0.00 0.00 0.00 3.79
1524 2021 2.079925 GCTCAGCTGAGGTTTCGATTT 58.920 47.619 37.86 0.00 42.29 2.17
1586 2083 3.149196 TCTTTGCCATGTGACTTTCTCC 58.851 45.455 0.00 0.00 0.00 3.71
1658 2155 8.691661 AAAAACATCATGTCCTACTACTTGTT 57.308 30.769 0.00 0.00 0.00 2.83
1659 2156 8.691661 AAAACATCATGTCCTACTACTTGTTT 57.308 30.769 0.00 0.00 36.61 2.83
1660 2157 8.691661 AAACATCATGTCCTACTACTTGTTTT 57.308 30.769 0.00 0.00 32.56 2.43
1661 2158 8.691661 AACATCATGTCCTACTACTTGTTTTT 57.308 30.769 0.00 0.00 0.00 1.94
1690 2187 6.267014 TGAAAGCTGTCCTACTACTTGTTAGT 59.733 38.462 0.17 0.00 43.89 2.24
1706 2203 6.698766 ACTTGTTAGTAGACGATGAAACGTTT 59.301 34.615 14.57 14.57 38.60 3.60
1712 2209 4.663636 AGACGATGAAACGTTTTGGATC 57.336 40.909 15.89 14.81 46.52 3.36
1713 2210 4.315803 AGACGATGAAACGTTTTGGATCT 58.684 39.130 15.89 11.56 46.52 2.75
1714 2211 4.755123 AGACGATGAAACGTTTTGGATCTT 59.245 37.500 15.89 10.42 46.52 2.40
1715 2212 5.238650 AGACGATGAAACGTTTTGGATCTTT 59.761 36.000 15.89 7.04 46.52 2.52
1716 2213 6.425721 AGACGATGAAACGTTTTGGATCTTTA 59.574 34.615 15.89 0.00 46.52 1.85
1717 2214 6.961576 ACGATGAAACGTTTTGGATCTTTAA 58.038 32.000 15.89 0.00 44.14 1.52
1718 2215 6.854381 ACGATGAAACGTTTTGGATCTTTAAC 59.146 34.615 15.89 0.00 44.14 2.01
1719 2216 6.853872 CGATGAAACGTTTTGGATCTTTAACA 59.146 34.615 15.89 4.11 0.00 2.41
1720 2217 7.059488 CGATGAAACGTTTTGGATCTTTAACAG 59.941 37.037 15.89 0.50 0.00 3.16
1724 2221 6.870971 ACGTTTTGGATCTTTAACAGCTTA 57.129 33.333 0.00 0.00 0.00 3.09
1755 2252 6.922957 TGTGATTTTGAGCTTAATTGTGGTTC 59.077 34.615 0.00 0.00 0.00 3.62
1758 2255 5.452078 TTTGAGCTTAATTGTGGTTCTGG 57.548 39.130 0.00 0.00 0.00 3.86
1759 2256 2.819608 TGAGCTTAATTGTGGTTCTGGC 59.180 45.455 0.00 0.00 0.00 4.85
1760 2257 2.819608 GAGCTTAATTGTGGTTCTGGCA 59.180 45.455 0.00 0.00 0.00 4.92
1762 2259 3.445096 AGCTTAATTGTGGTTCTGGCATC 59.555 43.478 0.00 0.00 0.00 3.91
1857 2360 2.052237 GCTGACGTTTGTGTGCCG 60.052 61.111 0.00 0.00 0.00 5.69
1868 2371 1.959226 GTGTGCCGTTCGTCACCAT 60.959 57.895 4.08 0.00 32.51 3.55
1907 2410 5.164080 GCTAAACTATGCTTTCGGCTATACG 60.164 44.000 0.00 0.00 42.39 3.06
1978 2492 0.947244 CATTAGATGTTGGAGGCGCC 59.053 55.000 21.89 21.89 37.10 6.53
2045 2559 1.981254 AATTGCAATTTCGGCACTCG 58.019 45.000 18.99 0.00 41.75 4.18
2155 2674 2.752903 GCCTCCCATGTTCGTTATTTGT 59.247 45.455 0.00 0.00 0.00 2.83
2173 2694 1.871039 TGTAGCTCCAACGCTGTTTTC 59.129 47.619 0.00 0.00 41.12 2.29
2181 2702 2.349155 CCAACGCTGTTTTCCTTCGTAC 60.349 50.000 0.00 0.00 32.71 3.67
2182 2703 2.521105 ACGCTGTTTTCCTTCGTACT 57.479 45.000 0.00 0.00 0.00 2.73
2183 2704 2.401351 ACGCTGTTTTCCTTCGTACTC 58.599 47.619 0.00 0.00 0.00 2.59
2184 2705 1.725164 CGCTGTTTTCCTTCGTACTCC 59.275 52.381 0.00 0.00 0.00 3.85
2185 2706 2.609737 CGCTGTTTTCCTTCGTACTCCT 60.610 50.000 0.00 0.00 0.00 3.69
2186 2707 3.400255 GCTGTTTTCCTTCGTACTCCTT 58.600 45.455 0.00 0.00 0.00 3.36
2187 2708 3.432592 GCTGTTTTCCTTCGTACTCCTTC 59.567 47.826 0.00 0.00 0.00 3.46
2188 2709 4.628074 CTGTTTTCCTTCGTACTCCTTCA 58.372 43.478 0.00 0.00 0.00 3.02
2189 2710 5.026038 TGTTTTCCTTCGTACTCCTTCAA 57.974 39.130 0.00 0.00 0.00 2.69
2190 2711 5.617252 TGTTTTCCTTCGTACTCCTTCAAT 58.383 37.500 0.00 0.00 0.00 2.57
2191 2712 6.761312 TGTTTTCCTTCGTACTCCTTCAATA 58.239 36.000 0.00 0.00 0.00 1.90
2192 2713 6.647895 TGTTTTCCTTCGTACTCCTTCAATAC 59.352 38.462 0.00 0.00 0.00 1.89
2204 2725 5.209818 TCCTTCAATACTTCAAGTCGTGT 57.790 39.130 0.00 0.00 0.00 4.49
2208 2729 5.447624 TCAATACTTCAAGTCGTGTCTGA 57.552 39.130 0.00 0.00 0.00 3.27
2311 2834 1.379977 CACCGGTAGGAGAGCTGGA 60.380 63.158 6.87 0.00 41.02 3.86
2437 2961 2.087009 CGGAGAAGTTGCCGTCGTC 61.087 63.158 5.76 0.00 42.49 4.20
2448 2972 0.109272 GCCGTCGTCTGATCTTGACA 60.109 55.000 15.83 4.75 34.37 3.58
2489 3027 3.333980 TCTTGACTGTTCTAGGGGAGAGA 59.666 47.826 0.00 0.00 34.93 3.10
2490 3028 3.374042 TGACTGTTCTAGGGGAGAGAG 57.626 52.381 0.00 0.00 34.93 3.20
2491 3029 2.920271 TGACTGTTCTAGGGGAGAGAGA 59.080 50.000 0.00 0.00 34.93 3.10
2492 3030 3.053991 TGACTGTTCTAGGGGAGAGAGAG 60.054 52.174 0.00 0.00 34.93 3.20
2493 3031 3.194620 ACTGTTCTAGGGGAGAGAGAGA 58.805 50.000 0.00 0.00 34.93 3.10
2494 3032 3.202151 ACTGTTCTAGGGGAGAGAGAGAG 59.798 52.174 0.00 0.00 34.93 3.20
2495 3033 2.512056 TGTTCTAGGGGAGAGAGAGAGG 59.488 54.545 0.00 0.00 34.93 3.69
2496 3034 1.827792 TCTAGGGGAGAGAGAGAGGG 58.172 60.000 0.00 0.00 0.00 4.30
2497 3035 0.777446 CTAGGGGAGAGAGAGAGGGG 59.223 65.000 0.00 0.00 0.00 4.79
2498 3036 0.048117 TAGGGGAGAGAGAGAGGGGT 59.952 60.000 0.00 0.00 0.00 4.95
2499 3037 1.231928 GGGGAGAGAGAGAGGGGTC 59.768 68.421 0.00 0.00 0.00 4.46
2501 3039 0.185175 GGGAGAGAGAGAGGGGTCTC 59.815 65.000 0.00 0.00 43.03 3.36
2502 3040 0.923358 GGAGAGAGAGAGGGGTCTCA 59.077 60.000 5.26 0.00 44.83 3.27
2503 3041 1.286553 GGAGAGAGAGAGGGGTCTCAA 59.713 57.143 5.26 0.00 44.83 3.02
2504 3042 2.091333 GGAGAGAGAGAGGGGTCTCAAT 60.091 54.545 5.26 0.00 44.83 2.57
2505 3043 3.629796 GGAGAGAGAGAGGGGTCTCAATT 60.630 52.174 5.26 0.00 44.83 2.32
2506 3044 4.030216 GAGAGAGAGAGGGGTCTCAATTT 58.970 47.826 5.26 0.00 44.83 1.82
2558 3096 3.018149 AGTCCTTGTCCTGACGAGTATC 58.982 50.000 12.41 4.14 40.45 2.24
2565 3103 0.386100 CCTGACGAGTATCATCGCCG 60.386 60.000 0.00 0.00 46.60 6.46
2659 3198 3.378427 GCTCCACTGAGAAACAACAGTTT 59.622 43.478 0.00 0.00 43.52 2.66
2704 3243 2.061773 CGGTGGAATCACGATATCAGC 58.938 52.381 3.12 0.00 44.50 4.26
2706 3245 2.802816 GGTGGAATCACGATATCAGCAC 59.197 50.000 3.12 0.00 44.50 4.40
2765 3307 1.689813 TGCCGACCAGTTAGTTTCTGA 59.310 47.619 0.00 0.00 35.20 3.27
2793 3335 7.702348 ACTGTTGTTTGAGATTAAACTTCTTGC 59.298 33.333 0.00 0.00 40.36 4.01
2797 3339 8.677148 TGTTTGAGATTAAACTTCTTGCTAGT 57.323 30.769 0.00 0.00 40.36 2.57
2857 3402 2.418368 TGTGCACCAAGGATATCCAC 57.582 50.000 23.81 11.34 38.89 4.02
2921 3466 7.875327 ACGTTCCTAAAGCATATAAAATGGT 57.125 32.000 0.00 0.00 0.00 3.55
2922 3467 8.967664 ACGTTCCTAAAGCATATAAAATGGTA 57.032 30.769 0.00 0.00 0.00 3.25
2923 3468 9.398538 ACGTTCCTAAAGCATATAAAATGGTAA 57.601 29.630 0.00 0.00 0.00 2.85
3007 3552 6.671190 TGTTGATGAAGCAACTTGTTATCTG 58.329 36.000 12.19 0.00 46.31 2.90
3096 3641 1.475280 TGACAGCGTTCTAGCCGTAAT 59.525 47.619 4.02 0.00 38.01 1.89
3111 3656 2.743126 CCGTAATTGCCTTTTACCGTCA 59.257 45.455 0.00 0.00 0.00 4.35
3314 3861 4.017499 AGGTACAATAATCAGGCCCAGTTT 60.017 41.667 0.00 0.00 0.00 2.66
3316 3863 4.806640 ACAATAATCAGGCCCAGTTTTG 57.193 40.909 0.00 0.00 0.00 2.44
3318 3865 4.220602 ACAATAATCAGGCCCAGTTTTGTC 59.779 41.667 0.00 0.00 0.00 3.18
3320 3867 2.683211 ATCAGGCCCAGTTTTGTCTT 57.317 45.000 0.00 0.00 0.00 3.01
3321 3868 2.452600 TCAGGCCCAGTTTTGTCTTT 57.547 45.000 0.00 0.00 0.00 2.52
3342 3889 7.063780 GTCTTTATTTCCATGCTTTTGATGGTG 59.936 37.037 0.00 0.00 41.19 4.17
3366 3926 3.777106 TTTGATCAGTTCCTGCTGACT 57.223 42.857 0.00 0.00 46.72 3.41
3379 3939 2.196295 GCTGACTAGCTGGTTACGAG 57.804 55.000 3.47 0.00 46.57 4.18
3465 4027 5.181748 GGCAACTAGTCTGAAGATGTTCAT 58.818 41.667 5.65 0.00 41.96 2.57
3510 4072 5.403246 AGAAGTTTGCATCGTCTGTACTAG 58.597 41.667 6.96 0.00 0.00 2.57
3517 4079 3.633235 CATCGTCTGTACTAGGTGATGC 58.367 50.000 0.00 0.00 34.24 3.91
3639 4201 6.619801 AGTGTTAACTGTCTTGGAATTCAC 57.380 37.500 7.93 0.00 34.48 3.18
3789 4351 8.130469 GGACTGTCAGTTAGCTACTAATTAGAC 58.870 40.741 19.38 5.64 34.56 2.59
4236 4863 3.764885 ATCTGAGCGTAAACATTTGGC 57.235 42.857 0.00 0.00 0.00 4.52
4309 4936 6.011628 AGGAGTTGAAGGGGAAATAGAATCAA 60.012 38.462 0.00 0.00 0.00 2.57
4356 4983 9.559958 AATCGAGTTCATTTGTAATGACAATTC 57.440 29.630 0.00 0.00 44.96 2.17
4482 5109 7.555914 TGCCAAACTGCATAATTACTGAGATAA 59.444 33.333 0.00 0.00 36.04 1.75
4484 5111 8.892723 CCAAACTGCATAATTACTGAGATAACA 58.107 33.333 0.00 0.00 0.00 2.41
4594 5274 2.245159 CTGCTCACAGTTGTCTTGGA 57.755 50.000 0.00 0.00 39.22 3.53
4602 5282 3.997021 CACAGTTGTCTTGGACCTGATAC 59.003 47.826 9.64 0.00 30.36 2.24
4614 5294 7.732140 TCTTGGACCTGATACAATCTCTCATAT 59.268 37.037 0.00 0.00 27.71 1.78
4615 5295 8.956446 TTGGACCTGATACAATCTCTCATATA 57.044 34.615 0.00 0.00 0.00 0.86
4616 5296 8.354711 TGGACCTGATACAATCTCTCATATAC 57.645 38.462 0.00 0.00 0.00 1.47
4617 5297 7.950124 TGGACCTGATACAATCTCTCATATACA 59.050 37.037 0.00 0.00 0.00 2.29
4729 5409 6.884295 TCTGATATGATTTGGTTTCTTTCGGT 59.116 34.615 0.00 0.00 0.00 4.69
4768 5448 5.394663 CCTTGACATCGGAGTTGTCTATTCT 60.395 44.000 11.74 0.00 43.12 2.40
4802 5482 3.077359 AGCTGGTCAGAAAGTTATGTGC 58.923 45.455 1.65 0.00 0.00 4.57
4823 5503 0.114168 TGTTGCTTAATGGGGCCAGT 59.886 50.000 4.39 0.00 0.00 4.00
4847 5527 8.693625 AGTGATAGTGTTGGACTACCTAATTAC 58.306 37.037 0.00 0.00 40.09 1.89
4852 5532 7.742767 AGTGTTGGACTACCTAATTACTGTTT 58.257 34.615 0.00 0.00 37.04 2.83
4858 5538 7.233962 TGGACTACCTAATTACTGTTTGTCAGA 59.766 37.037 1.79 0.00 40.57 3.27
4902 5584 3.952021 CGTTTTTCTTTCTCGAACACGAC 59.048 43.478 0.00 0.00 34.28 4.34
4996 5678 9.296400 GTTAAGAGCATTTTAAAACACAGAACA 57.704 29.630 1.97 0.00 0.00 3.18
5008 5691 2.224867 ACACAGAACATTTGGCCTAGCT 60.225 45.455 3.32 0.00 0.00 3.32
5037 5720 8.897752 GCCAGATTTTATTTGTCTAAGAGATGT 58.102 33.333 0.00 0.00 0.00 3.06
5049 5732 9.778741 TTGTCTAAGAGATGTGTTTTACAGAAT 57.221 29.630 0.00 0.00 43.80 2.40
5080 5763 4.466370 CCAGTCCAACCTTAGTACTGATCA 59.534 45.833 5.39 0.00 39.93 2.92
5090 5773 8.083828 ACCTTAGTACTGATCAAGATTCATGT 57.916 34.615 5.39 0.00 0.00 3.21
5098 5781 4.638865 TGATCAAGATTCATGTGCTGAAGG 59.361 41.667 0.00 0.00 46.71 3.46
5123 5806 2.042686 TATGTGCATGCCAGAACCTC 57.957 50.000 16.68 0.00 0.00 3.85
5176 5859 6.270156 TGATATCAGACTGAGATCTGCATC 57.730 41.667 30.37 13.31 43.45 3.91
5212 5895 5.220472 CCAGTTACACTGCTGTATTTGATCG 60.220 44.000 0.00 0.00 44.63 3.69
5226 5909 2.124151 ATCGAGCAACCCATGGGC 60.124 61.111 31.73 17.10 39.32 5.36
5253 5936 4.266502 GCTTGTTTGTGTTTACGCATTGAA 59.733 37.500 0.00 0.00 36.14 2.69
5263 5947 5.050499 TGTTTACGCATTGAATTTTTGCCTG 60.050 36.000 0.00 0.00 32.76 4.85
5295 5979 9.921637 TGCATTTAGTTTTCGAGGAAAATAAAT 57.078 25.926 16.46 16.46 42.31 1.40
5400 6113 6.032094 TGAGAAAACCGAGACGTATTACATC 58.968 40.000 0.00 0.00 0.00 3.06
5447 6160 0.813610 TGTTGGAAGGTCAGTGCACG 60.814 55.000 12.01 6.78 0.00 5.34
5654 6367 7.686434 TCTTATATTCTTTATGGTAGTGGGCC 58.314 38.462 0.00 0.00 0.00 5.80
5710 6423 9.906660 CTGATAGAATAGAACACACTTCCTATC 57.093 37.037 0.00 0.00 0.00 2.08
5825 6545 2.077842 GAGCCCCATCCAGCCATGAT 62.078 60.000 0.00 0.00 0.00 2.45
5830 6550 2.443416 CCCATCCAGCCATGATACATG 58.557 52.381 0.00 4.94 0.00 3.21
5831 6551 2.040679 CCCATCCAGCCATGATACATGA 59.959 50.000 12.46 0.00 0.00 3.07
5832 6552 3.308904 CCCATCCAGCCATGATACATGAT 60.309 47.826 12.46 0.00 0.00 2.45
5833 6553 4.080186 CCCATCCAGCCATGATACATGATA 60.080 45.833 12.46 0.00 0.00 2.15
5834 6554 4.880120 CCATCCAGCCATGATACATGATAC 59.120 45.833 12.46 3.19 0.00 2.24
5835 6555 5.493809 CATCCAGCCATGATACATGATACA 58.506 41.667 12.46 0.00 0.00 2.29
5836 6556 4.898320 TCCAGCCATGATACATGATACAC 58.102 43.478 12.46 0.00 0.00 2.90
5853 6574 3.678056 ACACTGGCGAGTTTCTGATTA 57.322 42.857 0.00 0.00 0.00 1.75
5859 6580 3.504520 TGGCGAGTTTCTGATTAAAACCC 59.495 43.478 0.00 0.00 37.33 4.11
5875 6596 0.112218 ACCCACTGTATTTGCTGGCA 59.888 50.000 0.00 0.00 0.00 4.92
5878 6599 2.159198 CCCACTGTATTTGCTGGCAATC 60.159 50.000 8.86 4.30 35.70 2.67
5879 6600 2.478370 CCACTGTATTTGCTGGCAATCG 60.478 50.000 8.86 0.00 35.70 3.34
5938 6659 1.916777 GAGGGAAGGGTCCGGTTCA 60.917 63.158 0.00 0.00 46.04 3.18
5941 6662 2.046217 GAAGGGTCCGGTTCAGGC 60.046 66.667 0.00 0.00 0.00 4.85
6193 6914 0.465705 GCAGGATCACCATCGAAGGA 59.534 55.000 14.76 0.00 38.94 3.36
6231 6952 2.028658 TCCTGCTCATATCCAAGATCGC 60.029 50.000 0.00 0.00 0.00 4.58
6243 6964 1.600957 CAAGATCGCCATGGATGTGAC 59.399 52.381 18.40 0.82 0.00 3.67
6366 7087 1.305219 GCATTGTAACCGCTGGCTGA 61.305 55.000 0.00 0.00 0.00 4.26
6376 7097 1.499502 GCTGGCTGAAAAGCTCGAC 59.500 57.895 0.00 0.00 36.47 4.20
6400 7126 4.020543 AGGATCATATCGGTAGAGGAAGC 58.979 47.826 0.00 0.00 0.00 3.86
6406 7132 0.612174 TCGGTAGAGGAAGCAGCAGT 60.612 55.000 0.00 0.00 0.00 4.40
6407 7133 1.103803 CGGTAGAGGAAGCAGCAGTA 58.896 55.000 0.00 0.00 0.00 2.74
6408 7134 1.066303 CGGTAGAGGAAGCAGCAGTAG 59.934 57.143 0.00 0.00 0.00 2.57
6409 7135 2.104170 GGTAGAGGAAGCAGCAGTAGT 58.896 52.381 0.00 0.00 0.00 2.73
6410 7136 3.288964 GGTAGAGGAAGCAGCAGTAGTA 58.711 50.000 0.00 0.00 0.00 1.82
6411 7137 3.316868 GGTAGAGGAAGCAGCAGTAGTAG 59.683 52.174 0.00 0.00 0.00 2.57
6414 7140 4.601084 AGAGGAAGCAGCAGTAGTAGTAA 58.399 43.478 0.00 0.00 0.00 2.24
6418 7144 6.130569 AGGAAGCAGCAGTAGTAGTAATAGT 58.869 40.000 0.00 0.00 0.00 2.12
6421 7147 7.229106 GGAAGCAGCAGTAGTAGTAATAGTAGT 59.771 40.741 0.00 0.00 0.00 2.73
6424 7150 8.431222 AGCAGCAGTAGTAGTAATAGTAGTAGT 58.569 37.037 0.00 0.00 0.00 2.73
6472 7198 3.120304 TGAGTCTGTATCGTGTTGTCGAG 60.120 47.826 0.00 0.00 43.00 4.04
6533 7264 5.892568 TGTACCATTTGCGTTTTACTGTTT 58.107 33.333 0.00 0.00 0.00 2.83
6534 7265 5.972382 TGTACCATTTGCGTTTTACTGTTTC 59.028 36.000 0.00 0.00 0.00 2.78
6535 7266 4.364860 ACCATTTGCGTTTTACTGTTTCC 58.635 39.130 0.00 0.00 0.00 3.13
6536 7267 4.142138 ACCATTTGCGTTTTACTGTTTCCA 60.142 37.500 0.00 0.00 0.00 3.53
6591 7322 1.487976 CCCAGACATGAGTAGCACCAT 59.512 52.381 0.00 0.00 0.00 3.55
6669 7400 4.012374 CCTCTGATGTTGCAACTGGTATT 58.988 43.478 28.61 8.06 0.00 1.89
6670 7401 5.185454 CCTCTGATGTTGCAACTGGTATTA 58.815 41.667 28.61 10.86 0.00 0.98
6671 7402 5.065218 CCTCTGATGTTGCAACTGGTATTAC 59.935 44.000 28.61 11.89 0.00 1.89
6735 7482 3.047796 GTTTCAACTTGCATGCACTGAG 58.952 45.455 22.58 18.06 0.00 3.35
6738 7485 0.870393 AACTTGCATGCACTGAGTCG 59.130 50.000 22.58 5.48 0.00 4.18
6770 7517 1.209019 AGCACTGATAACTGCTCCCTG 59.791 52.381 0.00 0.00 39.66 4.45
6786 7533 3.906846 CTCCCTGCCTCCATAAATAGACT 59.093 47.826 0.00 0.00 0.00 3.24
6854 7612 2.224523 TGTGTCACCTTCCATTCACCTC 60.225 50.000 0.00 0.00 0.00 3.85
6856 7614 2.224523 TGTCACCTTCCATTCACCTCAC 60.225 50.000 0.00 0.00 0.00 3.51
6861 7619 2.240667 CCTTCCATTCACCTCACCTCAT 59.759 50.000 0.00 0.00 0.00 2.90
6927 7685 1.876156 AGCTTTCTTTCACCAGAAGCG 59.124 47.619 0.00 0.00 34.22 4.68
6962 7720 0.875908 CGATGGCGATCATGACGGTT 60.876 55.000 9.52 0.00 40.82 4.44
7169 7927 6.524101 ACAGAAAGAGAGAGATAGGTGTTC 57.476 41.667 0.00 0.00 0.00 3.18
7193 7951 4.072839 CTGTGGATGGATGGATGATTGAG 58.927 47.826 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.428534 CACGCTAAAAGGACCAAAATTGC 59.571 43.478 0.00 0.00 0.00 3.56
1 2 4.616953 ACACGCTAAAAGGACCAAAATTG 58.383 39.130 0.00 0.00 0.00 2.32
2 3 4.929819 ACACGCTAAAAGGACCAAAATT 57.070 36.364 0.00 0.00 0.00 1.82
10 11 7.493743 TTGTAAACAATACACGCTAAAAGGA 57.506 32.000 0.00 0.00 0.00 3.36
31 32 1.670083 GGCCCGCGTTAGAAGTTGT 60.670 57.895 4.92 0.00 0.00 3.32
60 61 1.741770 GTCAGCCCGACATGACACC 60.742 63.158 0.00 0.00 44.21 4.16
61 62 3.876300 GTCAGCCCGACATGACAC 58.124 61.111 0.00 0.00 44.21 3.67
89 91 3.589881 GGGATCAGCATGGCACGC 61.590 66.667 0.00 0.00 36.16 5.34
105 107 0.750911 GAATGCCTGGGCTCAGAAGG 60.751 60.000 17.43 0.00 43.49 3.46
131 133 1.014352 ATAAAAGGGTCGCACGATGC 58.986 50.000 0.00 0.00 40.69 3.91
134 136 4.932268 CTTTTATAAAAGGGTCGCACGA 57.068 40.909 24.48 0.00 41.23 4.35
174 176 1.617850 CCTACAAAATGGCTTGGCACA 59.382 47.619 0.00 0.00 0.00 4.57
175 177 1.618343 ACCTACAAAATGGCTTGGCAC 59.382 47.619 0.00 0.00 0.00 5.01
177 179 1.066929 CCACCTACAAAATGGCTTGGC 60.067 52.381 0.00 0.00 0.00 4.52
178 180 1.550072 CCCACCTACAAAATGGCTTGG 59.450 52.381 0.00 0.00 31.66 3.61
179 181 2.231235 GACCCACCTACAAAATGGCTTG 59.769 50.000 0.00 0.00 31.66 4.01
180 182 2.525368 GACCCACCTACAAAATGGCTT 58.475 47.619 0.00 0.00 31.66 4.35
181 183 1.613255 CGACCCACCTACAAAATGGCT 60.613 52.381 0.00 0.00 31.66 4.75
182 184 0.808755 CGACCCACCTACAAAATGGC 59.191 55.000 0.00 0.00 31.66 4.40
183 185 1.459450 CCGACCCACCTACAAAATGG 58.541 55.000 0.00 0.00 0.00 3.16
184 186 1.459450 CCCGACCCACCTACAAAATG 58.541 55.000 0.00 0.00 0.00 2.32
185 187 0.323087 GCCCGACCCACCTACAAAAT 60.323 55.000 0.00 0.00 0.00 1.82
186 188 1.073548 GCCCGACCCACCTACAAAA 59.926 57.895 0.00 0.00 0.00 2.44
187 189 1.844289 AGCCCGACCCACCTACAAA 60.844 57.895 0.00 0.00 0.00 2.83
188 190 2.203877 AGCCCGACCCACCTACAA 60.204 61.111 0.00 0.00 0.00 2.41
189 191 3.000819 CAGCCCGACCCACCTACA 61.001 66.667 0.00 0.00 0.00 2.74
190 192 3.001406 ACAGCCCGACCCACCTAC 61.001 66.667 0.00 0.00 0.00 3.18
191 193 3.000819 CACAGCCCGACCCACCTA 61.001 66.667 0.00 0.00 0.00 3.08
193 195 4.699522 GACACAGCCCGACCCACC 62.700 72.222 0.00 0.00 0.00 4.61
197 199 4.736896 GACCGACACAGCCCGACC 62.737 72.222 0.00 0.00 0.00 4.79
198 200 4.736896 GGACCGACACAGCCCGAC 62.737 72.222 0.00 0.00 0.00 4.79
200 202 2.028125 ATATGGACCGACACAGCCCG 62.028 60.000 0.00 0.00 0.00 6.13
201 203 0.532862 CATATGGACCGACACAGCCC 60.533 60.000 0.00 0.00 0.00 5.19
202 204 0.532862 CCATATGGACCGACACAGCC 60.533 60.000 17.49 0.00 37.39 4.85
203 205 0.178068 ACCATATGGACCGACACAGC 59.822 55.000 28.77 0.00 38.94 4.40
204 206 1.480545 TGACCATATGGACCGACACAG 59.519 52.381 28.77 0.00 38.94 3.66
205 207 1.480545 CTGACCATATGGACCGACACA 59.519 52.381 28.77 13.46 38.94 3.72
206 208 1.754803 TCTGACCATATGGACCGACAC 59.245 52.381 28.77 10.04 38.94 3.67
207 209 2.153034 TCTGACCATATGGACCGACA 57.847 50.000 28.77 16.46 38.94 4.35
208 210 2.894126 AGATCTGACCATATGGACCGAC 59.106 50.000 28.77 16.21 38.94 4.79
209 211 3.244887 AGATCTGACCATATGGACCGA 57.755 47.619 28.77 22.49 38.94 4.69
210 212 4.952957 AGATAGATCTGACCATATGGACCG 59.047 45.833 28.77 18.00 35.60 4.79
211 213 5.954752 TGAGATAGATCTGACCATATGGACC 59.045 44.000 28.77 18.33 37.25 4.46
212 214 7.473735 TTGAGATAGATCTGACCATATGGAC 57.526 40.000 28.77 22.16 37.25 4.02
213 215 8.370940 GTTTTGAGATAGATCTGACCATATGGA 58.629 37.037 28.77 6.00 37.25 3.41
214 216 8.152898 TGTTTTGAGATAGATCTGACCATATGG 58.847 37.037 20.68 20.68 37.25 2.74
215 217 9.722184 ATGTTTTGAGATAGATCTGACCATATG 57.278 33.333 5.18 0.00 37.25 1.78
219 221 9.551734 CATTATGTTTTGAGATAGATCTGACCA 57.448 33.333 5.18 0.00 37.25 4.02
220 222 8.502387 GCATTATGTTTTGAGATAGATCTGACC 58.498 37.037 5.18 0.00 37.25 4.02
221 223 9.049523 TGCATTATGTTTTGAGATAGATCTGAC 57.950 33.333 5.18 0.00 37.25 3.51
222 224 9.617523 TTGCATTATGTTTTGAGATAGATCTGA 57.382 29.630 5.18 0.00 37.25 3.27
230 232 9.807649 GGAATACTTTGCATTATGTTTTGAGAT 57.192 29.630 0.00 0.00 0.00 2.75
231 233 9.023962 AGGAATACTTTGCATTATGTTTTGAGA 57.976 29.630 0.00 0.00 0.00 3.27
232 234 9.643693 AAGGAATACTTTGCATTATGTTTTGAG 57.356 29.630 0.00 0.00 35.35 3.02
233 235 9.638239 GAAGGAATACTTTGCATTATGTTTTGA 57.362 29.630 0.00 0.00 40.21 2.69
234 236 8.872845 GGAAGGAATACTTTGCATTATGTTTTG 58.127 33.333 0.00 0.00 40.21 2.44
235 237 8.815912 AGGAAGGAATACTTTGCATTATGTTTT 58.184 29.630 0.00 0.00 40.21 2.43
236 238 8.366359 AGGAAGGAATACTTTGCATTATGTTT 57.634 30.769 0.00 0.00 40.21 2.83
237 239 7.068716 GGAGGAAGGAATACTTTGCATTATGTT 59.931 37.037 0.00 0.00 40.21 2.71
238 240 6.547510 GGAGGAAGGAATACTTTGCATTATGT 59.452 38.462 0.00 0.00 40.21 2.29
239 241 6.774656 AGGAGGAAGGAATACTTTGCATTATG 59.225 38.462 0.00 0.00 40.21 1.90
240 242 6.915786 AGGAGGAAGGAATACTTTGCATTAT 58.084 36.000 0.00 0.00 40.21 1.28
241 243 6.327386 AGGAGGAAGGAATACTTTGCATTA 57.673 37.500 0.00 0.00 40.21 1.90
242 244 5.198602 AGGAGGAAGGAATACTTTGCATT 57.801 39.130 0.00 0.00 40.21 3.56
243 245 4.870021 AGGAGGAAGGAATACTTTGCAT 57.130 40.909 0.00 0.00 40.21 3.96
244 246 4.289672 AGAAGGAGGAAGGAATACTTTGCA 59.710 41.667 0.00 0.00 40.21 4.08
245 247 4.849518 AGAAGGAGGAAGGAATACTTTGC 58.150 43.478 0.00 0.00 40.21 3.68
246 248 6.054860 TGAGAAGGAGGAAGGAATACTTTG 57.945 41.667 0.00 0.00 40.21 2.77
247 249 6.704056 TTGAGAAGGAGGAAGGAATACTTT 57.296 37.500 0.00 0.00 40.21 2.66
248 250 6.704056 TTTGAGAAGGAGGAAGGAATACTT 57.296 37.500 0.00 0.00 43.65 2.24
249 251 6.704056 TTTTGAGAAGGAGGAAGGAATACT 57.296 37.500 0.00 0.00 0.00 2.12
252 254 9.859152 CTTATATTTTGAGAAGGAGGAAGGAAT 57.141 33.333 0.00 0.00 0.00 3.01
253 255 8.275040 CCTTATATTTTGAGAAGGAGGAAGGAA 58.725 37.037 0.00 0.00 40.88 3.36
254 256 7.638192 GCCTTATATTTTGAGAAGGAGGAAGGA 60.638 40.741 3.71 0.00 40.88 3.36
255 257 6.488344 GCCTTATATTTTGAGAAGGAGGAAGG 59.512 42.308 3.71 0.00 40.88 3.46
256 258 6.203723 CGCCTTATATTTTGAGAAGGAGGAAG 59.796 42.308 3.71 0.00 40.88 3.46
257 259 6.055588 CGCCTTATATTTTGAGAAGGAGGAA 58.944 40.000 3.71 0.00 40.88 3.36
258 260 5.611374 CGCCTTATATTTTGAGAAGGAGGA 58.389 41.667 3.71 0.00 40.88 3.71
259 261 4.214332 GCGCCTTATATTTTGAGAAGGAGG 59.786 45.833 0.00 0.00 40.88 4.30
260 262 4.084328 CGCGCCTTATATTTTGAGAAGGAG 60.084 45.833 0.00 1.55 40.88 3.69
261 263 3.807622 CGCGCCTTATATTTTGAGAAGGA 59.192 43.478 0.00 0.00 40.88 3.36
262 264 3.560068 ACGCGCCTTATATTTTGAGAAGG 59.440 43.478 5.73 0.00 41.26 3.46
263 265 4.795970 ACGCGCCTTATATTTTGAGAAG 57.204 40.909 5.73 0.00 0.00 2.85
264 266 5.122554 TCAAACGCGCCTTATATTTTGAGAA 59.877 36.000 5.73 0.00 31.21 2.87
265 267 4.632251 TCAAACGCGCCTTATATTTTGAGA 59.368 37.500 5.73 0.00 31.21 3.27
266 268 4.904116 TCAAACGCGCCTTATATTTTGAG 58.096 39.130 5.73 0.00 31.21 3.02
267 269 4.948608 TCAAACGCGCCTTATATTTTGA 57.051 36.364 5.73 9.65 32.08 2.69
268 270 6.567769 AAATCAAACGCGCCTTATATTTTG 57.432 33.333 5.73 7.14 0.00 2.44
269 271 6.588373 ACAAAATCAAACGCGCCTTATATTTT 59.412 30.769 5.73 12.15 0.00 1.82
270 272 6.096695 ACAAAATCAAACGCGCCTTATATTT 58.903 32.000 5.73 7.05 0.00 1.40
271 273 5.646606 ACAAAATCAAACGCGCCTTATATT 58.353 33.333 5.73 1.00 0.00 1.28
272 274 5.243426 ACAAAATCAAACGCGCCTTATAT 57.757 34.783 5.73 0.00 0.00 0.86
273 275 4.688511 ACAAAATCAAACGCGCCTTATA 57.311 36.364 5.73 0.00 0.00 0.98
274 276 3.569250 ACAAAATCAAACGCGCCTTAT 57.431 38.095 5.73 0.00 0.00 1.73
275 277 3.664798 CGTACAAAATCAAACGCGCCTTA 60.665 43.478 5.73 0.00 0.00 2.69
276 278 2.657184 GTACAAAATCAAACGCGCCTT 58.343 42.857 5.73 0.00 0.00 4.35
277 279 1.399215 CGTACAAAATCAAACGCGCCT 60.399 47.619 5.73 0.00 0.00 5.52
278 280 0.972013 CGTACAAAATCAAACGCGCC 59.028 50.000 5.73 0.00 0.00 6.53
279 281 0.972013 CCGTACAAAATCAAACGCGC 59.028 50.000 5.73 0.00 34.13 6.86
280 282 2.096614 AGACCGTACAAAATCAAACGCG 60.097 45.455 3.53 3.53 34.13 6.01
281 283 3.531262 AGACCGTACAAAATCAAACGC 57.469 42.857 0.00 0.00 34.13 4.84
282 284 5.503498 TCAAAGACCGTACAAAATCAAACG 58.497 37.500 0.00 0.00 35.20 3.60
283 285 6.129194 GCATCAAAGACCGTACAAAATCAAAC 60.129 38.462 0.00 0.00 0.00 2.93
284 286 5.918011 GCATCAAAGACCGTACAAAATCAAA 59.082 36.000 0.00 0.00 0.00 2.69
285 287 5.009110 TGCATCAAAGACCGTACAAAATCAA 59.991 36.000 0.00 0.00 0.00 2.57
286 288 4.517075 TGCATCAAAGACCGTACAAAATCA 59.483 37.500 0.00 0.00 0.00 2.57
287 289 5.041951 TGCATCAAAGACCGTACAAAATC 57.958 39.130 0.00 0.00 0.00 2.17
288 290 5.643379 ATGCATCAAAGACCGTACAAAAT 57.357 34.783 0.00 0.00 0.00 1.82
289 291 6.205853 AGTTATGCATCAAAGACCGTACAAAA 59.794 34.615 0.19 0.00 0.00 2.44
294 296 5.935206 TCAAAGTTATGCATCAAAGACCGTA 59.065 36.000 0.19 0.00 0.00 4.02
296 298 5.295431 TCAAAGTTATGCATCAAAGACCG 57.705 39.130 0.19 0.00 0.00 4.79
334 336 7.718525 ACAAATACAATGATGCTATTGATGCA 58.281 30.769 13.33 0.00 44.95 3.96
335 337 8.080417 AGACAAATACAATGATGCTATTGATGC 58.920 33.333 13.33 0.00 39.79 3.91
336 338 9.961265 AAGACAAATACAATGATGCTATTGATG 57.039 29.630 13.33 9.59 39.79 3.07
378 480 7.801716 TTCATTTAGTGTATGCCTATGGAAC 57.198 36.000 0.00 0.00 0.00 3.62
380 482 8.995027 ATTTTCATTTAGTGTATGCCTATGGA 57.005 30.769 0.00 0.00 0.00 3.41
419 541 4.328983 TGACTTTTCTGAACTTCGTCACAC 59.671 41.667 0.00 0.00 0.00 3.82
429 551 3.098636 GCACGTGTTGACTTTTCTGAAC 58.901 45.455 18.38 0.00 0.00 3.18
430 552 2.096819 GGCACGTGTTGACTTTTCTGAA 59.903 45.455 18.38 0.00 0.00 3.02
563 690 0.792640 CAGTGCTGTCTAACCTTGCG 59.207 55.000 0.00 0.00 0.00 4.85
585 712 1.734707 GCGCTTTTCTGCTAGTACCGA 60.735 52.381 0.00 0.00 0.00 4.69
604 732 1.471153 GGTCTCGTTACTTAGGCTGGC 60.471 57.143 0.00 0.00 0.00 4.85
716 1168 4.375606 GCAAAAGCCCGTTTTATTTTCGTC 60.376 41.667 0.00 0.00 36.11 4.20
789 1244 2.038269 GTGCGTATGTGTGGGGTGG 61.038 63.158 0.00 0.00 0.00 4.61
791 1246 0.906066 TATGTGCGTATGTGTGGGGT 59.094 50.000 0.00 0.00 0.00 4.95
901 1369 1.118838 CGGGGAGAAAGCAGAGAGAT 58.881 55.000 0.00 0.00 0.00 2.75
1063 1535 3.505293 ACAATGGAAAGAAGAGCAAGAGC 59.495 43.478 0.00 0.00 42.56 4.09
1121 1598 1.689233 CAGGAATGGACGGGGGAGA 60.689 63.158 0.00 0.00 0.00 3.71
1127 1604 0.673644 AGCGAAACAGGAATGGACGG 60.674 55.000 0.00 0.00 0.00 4.79
1129 1606 1.734465 CTCAGCGAAACAGGAATGGAC 59.266 52.381 0.00 0.00 0.00 4.02
1132 1609 2.223203 GCATCTCAGCGAAACAGGAATG 60.223 50.000 0.00 0.00 0.00 2.67
1184 1670 2.650116 GGTCTTGAGCGGCTCCTCA 61.650 63.158 26.00 6.93 39.94 3.86
1193 1679 1.271597 ACCTGGAATGTGGTCTTGAGC 60.272 52.381 0.00 0.00 29.18 4.26
1355 1852 1.401931 CCAGAAATGGAAAGCAGCACG 60.402 52.381 0.00 0.00 0.00 5.34
1404 1901 5.897050 ACCACGAACTGAGCAAAATAAAAA 58.103 33.333 0.00 0.00 0.00 1.94
1418 1915 2.674177 CGAATCTGCCTAACCACGAACT 60.674 50.000 0.00 0.00 0.00 3.01
1498 1995 4.527583 CCTCAGCTGAGCTCGGGC 62.528 72.222 34.09 21.49 40.75 6.13
1586 2083 1.539929 CGGGAGCAAGGAATGAGCTAG 60.540 57.143 0.00 0.00 39.02 3.42
1633 2130 8.691661 AACAAGTAGTAGGACATGATGTTTTT 57.308 30.769 0.00 0.00 0.00 1.94
1634 2131 8.691661 AAACAAGTAGTAGGACATGATGTTTT 57.308 30.769 0.00 0.00 35.60 2.43
1635 2132 8.691661 AAAACAAGTAGTAGGACATGATGTTT 57.308 30.769 0.00 0.00 39.39 2.83
1636 2133 8.691661 AAAAACAAGTAGTAGGACATGATGTT 57.308 30.769 0.00 0.00 0.00 2.71
1661 2158 6.826741 ACAAGTAGTAGGACAGCTTTCAAAAA 59.173 34.615 1.67 0.00 0.00 1.94
1662 2159 6.354130 ACAAGTAGTAGGACAGCTTTCAAAA 58.646 36.000 1.67 0.00 0.00 2.44
1663 2160 5.925509 ACAAGTAGTAGGACAGCTTTCAAA 58.074 37.500 1.67 0.00 0.00 2.69
1664 2161 5.546621 ACAAGTAGTAGGACAGCTTTCAA 57.453 39.130 1.67 0.00 0.00 2.69
1665 2162 5.546621 AACAAGTAGTAGGACAGCTTTCA 57.453 39.130 1.67 0.00 0.00 2.69
1666 2163 6.689554 ACTAACAAGTAGTAGGACAGCTTTC 58.310 40.000 0.00 0.00 41.51 2.62
1667 2164 6.667558 ACTAACAAGTAGTAGGACAGCTTT 57.332 37.500 0.00 0.00 41.51 3.51
1677 2174 8.171196 CGTTTCATCGTCTACTAACAAGTAGTA 58.829 37.037 11.28 0.28 41.51 1.82
1690 2187 5.475719 AGATCCAAAACGTTTCATCGTCTA 58.524 37.500 15.01 0.00 43.38 2.59
1694 2191 6.853872 TGTTAAAGATCCAAAACGTTTCATCG 59.146 34.615 15.01 3.54 0.00 3.84
1716 2213 8.616076 GCTCAAAATCACATAGTATAAGCTGTT 58.384 33.333 0.00 0.00 0.00 3.16
1717 2214 7.989741 AGCTCAAAATCACATAGTATAAGCTGT 59.010 33.333 0.00 0.00 34.19 4.40
1718 2215 8.375608 AGCTCAAAATCACATAGTATAAGCTG 57.624 34.615 0.00 0.00 34.19 4.24
1719 2216 8.970859 AAGCTCAAAATCACATAGTATAAGCT 57.029 30.769 0.00 0.00 36.82 3.74
1729 2226 6.996509 ACCACAATTAAGCTCAAAATCACAT 58.003 32.000 0.00 0.00 0.00 3.21
1759 2256 6.910995 ACAAGAGAATTTCAAGCAAGAGATG 58.089 36.000 0.00 0.00 0.00 2.90
1760 2257 7.521871 AACAAGAGAATTTCAAGCAAGAGAT 57.478 32.000 0.00 0.00 0.00 2.75
1775 2278 7.027874 ACCCCAAGTGATAATAACAAGAGAA 57.972 36.000 0.00 0.00 0.00 2.87
1795 2298 2.356844 GGGTCATTCCTAAGAACACCCC 60.357 54.545 10.37 1.42 45.34 4.95
1796 2299 3.000684 GGGTCATTCCTAAGAACACCC 57.999 52.381 7.14 7.14 45.13 4.61
1857 2360 4.551388 GGATCTCTATCATGGTGACGAAC 58.449 47.826 0.00 0.00 33.41 3.95
1868 2371 7.148222 GCATAGTTTAGCTACGGATCTCTATCA 60.148 40.741 0.00 0.00 31.06 2.15
1953 2467 4.526970 GCCTCCAACATCTAATGAGGAAA 58.473 43.478 8.00 0.00 44.34 3.13
1954 2468 3.432186 CGCCTCCAACATCTAATGAGGAA 60.432 47.826 8.00 0.00 44.34 3.36
1956 2470 2.487934 CGCCTCCAACATCTAATGAGG 58.512 52.381 0.00 0.00 44.38 3.86
2011 2525 3.838565 TGCAATTAGGACCTGACCAAAA 58.161 40.909 3.53 0.00 0.00 2.44
2045 2559 1.515521 CTTCTTCCCAACCACGGCAC 61.516 60.000 0.00 0.00 0.00 5.01
2091 2610 1.065126 GGCTGATGTACCAAAGCTCCT 60.065 52.381 9.72 0.00 35.93 3.69
2092 2611 1.340017 TGGCTGATGTACCAAAGCTCC 60.340 52.381 9.72 0.00 35.93 4.70
2093 2612 1.740025 GTGGCTGATGTACCAAAGCTC 59.260 52.381 9.72 3.01 37.79 4.09
2094 2613 1.073763 TGTGGCTGATGTACCAAAGCT 59.926 47.619 9.72 0.00 37.79 3.74
2095 2614 1.533625 TGTGGCTGATGTACCAAAGC 58.466 50.000 2.94 2.94 37.79 3.51
2173 2694 5.962433 TGAAGTATTGAAGGAGTACGAAGG 58.038 41.667 0.00 0.00 0.00 3.46
2181 2702 5.230942 ACACGACTTGAAGTATTGAAGGAG 58.769 41.667 11.42 0.00 43.91 3.69
2182 2703 5.010719 AGACACGACTTGAAGTATTGAAGGA 59.989 40.000 11.42 0.00 43.91 3.36
2183 2704 5.119279 CAGACACGACTTGAAGTATTGAAGG 59.881 44.000 11.42 0.00 43.91 3.46
2184 2705 5.920840 TCAGACACGACTTGAAGTATTGAAG 59.079 40.000 11.42 0.00 45.18 3.02
2185 2706 5.690409 GTCAGACACGACTTGAAGTATTGAA 59.310 40.000 11.42 0.00 32.92 2.69
2186 2707 5.220381 GTCAGACACGACTTGAAGTATTGA 58.780 41.667 11.42 2.08 32.92 2.57
2187 2708 5.502214 GTCAGACACGACTTGAAGTATTG 57.498 43.478 0.00 0.75 32.92 1.90
2204 2725 2.210013 ACTCCAGCAAGCCGTCAGA 61.210 57.895 0.00 0.00 0.00 3.27
2208 2729 1.893808 CAACACTCCAGCAAGCCGT 60.894 57.895 0.00 0.00 0.00 5.68
2311 2834 4.731612 CGGCGCAGACTGCAGAGT 62.732 66.667 26.32 3.35 45.36 3.24
2330 2853 1.287815 CTCGCGTGTGGAGTGGTAA 59.712 57.895 5.77 0.00 0.00 2.85
2437 2961 5.505173 AAAACAAGGTGTGTCAAGATCAG 57.495 39.130 0.00 0.00 40.60 2.90
2448 2972 5.587043 TCAAGACGACATAAAAACAAGGTGT 59.413 36.000 0.00 0.00 0.00 4.16
2489 3027 1.065854 CGCAAATTGAGACCCCTCTCT 60.066 52.381 0.00 0.00 43.26 3.10
2490 3028 1.066143 TCGCAAATTGAGACCCCTCTC 60.066 52.381 0.00 0.00 43.17 3.20
2491 3029 0.984230 TCGCAAATTGAGACCCCTCT 59.016 50.000 0.00 0.00 40.10 3.69
2492 3030 2.044123 ATCGCAAATTGAGACCCCTC 57.956 50.000 0.68 0.00 39.86 4.30
2493 3031 2.493278 CAAATCGCAAATTGAGACCCCT 59.507 45.455 0.68 0.00 0.00 4.79
2494 3032 2.417243 CCAAATCGCAAATTGAGACCCC 60.417 50.000 0.68 0.00 0.00 4.95
2495 3033 2.491693 TCCAAATCGCAAATTGAGACCC 59.508 45.455 0.68 0.00 0.00 4.46
2496 3034 3.501950 GTCCAAATCGCAAATTGAGACC 58.498 45.455 0.68 0.00 0.00 3.85
2497 3035 3.191371 AGGTCCAAATCGCAAATTGAGAC 59.809 43.478 0.68 0.00 0.00 3.36
2498 3036 3.420893 AGGTCCAAATCGCAAATTGAGA 58.579 40.909 1.25 1.25 0.00 3.27
2499 3037 3.855689 AGGTCCAAATCGCAAATTGAG 57.144 42.857 0.00 0.00 0.00 3.02
2501 3039 5.469479 AGTAAAGGTCCAAATCGCAAATTG 58.531 37.500 0.00 0.00 0.00 2.32
2502 3040 5.619086 CGAGTAAAGGTCCAAATCGCAAATT 60.619 40.000 0.00 0.00 0.00 1.82
2503 3041 4.142687 CGAGTAAAGGTCCAAATCGCAAAT 60.143 41.667 0.00 0.00 0.00 2.32
2504 3042 3.187637 CGAGTAAAGGTCCAAATCGCAAA 59.812 43.478 0.00 0.00 0.00 3.68
2505 3043 2.739913 CGAGTAAAGGTCCAAATCGCAA 59.260 45.455 0.00 0.00 0.00 4.85
2506 3044 2.343101 CGAGTAAAGGTCCAAATCGCA 58.657 47.619 0.00 0.00 0.00 5.10
2558 3096 4.129737 AGGTCCACGACGGCGATG 62.130 66.667 22.49 12.48 41.64 3.84
2659 3198 6.920758 GCGCAGAAGAGATAAAGAAGATAAGA 59.079 38.462 0.30 0.00 0.00 2.10
2663 3202 4.047822 CGCGCAGAAGAGATAAAGAAGAT 58.952 43.478 8.75 0.00 0.00 2.40
2668 3207 1.590238 CACCGCGCAGAAGAGATAAAG 59.410 52.381 8.75 0.00 0.00 1.85
2704 3243 6.966435 ATAAAAATCATGAAAAAGGCGGTG 57.034 33.333 0.00 0.00 0.00 4.94
2706 3245 6.198216 CGGTATAAAAATCATGAAAAAGGCGG 59.802 38.462 0.00 0.00 0.00 6.13
2765 3307 8.281212 AGAAGTTTAATCTCAAACAACAGTGT 57.719 30.769 0.00 0.00 40.22 3.55
2793 3335 8.732746 ATTAAGCACTATTTGTTACCCACTAG 57.267 34.615 0.00 0.00 0.00 2.57
2797 3339 8.952278 CAGTAATTAAGCACTATTTGTTACCCA 58.048 33.333 0.00 0.00 0.00 4.51
2857 3402 2.771763 AAACGCAGCAGAGTCCCTCG 62.772 60.000 0.00 0.00 35.36 4.63
2961 3506 9.750125 CAACAGTACATCATATAAGCTTCTGTA 57.250 33.333 0.00 0.36 33.15 2.74
2962 3507 8.478066 TCAACAGTACATCATATAAGCTTCTGT 58.522 33.333 0.00 3.07 34.59 3.41
2963 3508 8.877808 TCAACAGTACATCATATAAGCTTCTG 57.122 34.615 0.00 2.36 0.00 3.02
2964 3509 9.486497 CATCAACAGTACATCATATAAGCTTCT 57.514 33.333 0.00 0.00 0.00 2.85
2965 3510 9.481340 TCATCAACAGTACATCATATAAGCTTC 57.519 33.333 0.00 0.00 0.00 3.86
2975 3520 5.308014 AGTTGCTTCATCAACAGTACATCA 58.692 37.500 8.98 0.00 46.44 3.07
3007 3552 7.222611 ACCAAACGATCAAATGCTTTATATTGC 59.777 33.333 0.00 0.00 0.00 3.56
3026 3571 1.164411 TCCATTAGCTGCACCAAACG 58.836 50.000 1.02 0.00 0.00 3.60
3096 3641 3.444388 ACTTTGTTGACGGTAAAAGGCAA 59.556 39.130 0.00 0.00 34.61 4.52
3129 3674 8.571461 AGTACTACAGTGCTGTACAACTATAA 57.429 34.615 20.92 0.00 44.42 0.98
3130 3675 9.102757 GTAGTACTACAGTGCTGTACAACTATA 57.897 37.037 25.02 7.88 44.42 1.31
3131 3676 7.828223 AGTAGTACTACAGTGCTGTACAACTAT 59.172 37.037 29.87 4.99 44.42 2.12
3262 3807 7.410174 TGGAATATCCTGTTAATCCAACAAGT 58.590 34.615 0.00 0.00 46.37 3.16
3314 3861 7.603404 CCATCAAAAGCATGGAAATAAAGACAA 59.397 33.333 0.00 0.00 43.32 3.18
3316 3863 7.063780 CACCATCAAAAGCATGGAAATAAAGAC 59.936 37.037 6.99 0.00 43.32 3.01
3318 3865 6.183360 GCACCATCAAAAGCATGGAAATAAAG 60.183 38.462 6.99 0.00 43.32 1.85
3320 3867 5.177326 GCACCATCAAAAGCATGGAAATAA 58.823 37.500 6.99 0.00 43.32 1.40
3321 3868 4.382901 GGCACCATCAAAAGCATGGAAATA 60.383 41.667 6.99 0.00 43.32 1.40
3366 3926 2.823924 TGTTTGCTCGTAACCAGCTA 57.176 45.000 0.00 0.00 37.79 3.32
3376 3936 5.980698 ATCAGAGATGTAATGTTTGCTCG 57.019 39.130 0.00 0.00 0.00 5.03
3465 4027 9.762933 CTTCTTGAAAATGGAAAGAATGGTTTA 57.237 29.630 0.00 0.00 38.77 2.01
3510 4072 2.355010 ATTAGAGCAAGGGCATCACC 57.645 50.000 0.00 0.00 44.61 4.02
3517 4079 6.681368 GCAACCATAAGAAATTAGAGCAAGGG 60.681 42.308 0.00 0.00 0.00 3.95
3668 4230 7.287927 TCTCAGAACTAGTGGTATAATCCCTTG 59.712 40.741 0.00 0.00 0.00 3.61
3760 4322 4.919793 TAGTAGCTAACTGACAGTCCTGT 58.080 43.478 8.93 0.00 42.31 4.00
3789 4351 7.931578 TTGTGTGTCCCTATTAGTTAATTGG 57.068 36.000 5.66 5.66 38.00 3.16
3835 4452 9.234384 CTGCAGCAAAATGAGATATTTTAGAAG 57.766 33.333 0.00 0.00 30.85 2.85
4148 4773 8.595362 TCAGTTCAGATCCTTCAGAAGTTATA 57.405 34.615 9.41 0.00 30.93 0.98
4236 4863 7.984050 ACATGTAGATGAATTCTAGGACTGTTG 59.016 37.037 6.90 3.51 37.62 3.33
4356 4983 4.154015 TCAAAGTTCATACCACTCATTGCG 59.846 41.667 0.00 0.00 0.00 4.85
4511 5138 5.587388 TGGACCACTAGTTCTAATAACGG 57.413 43.478 0.00 0.00 0.00 4.44
4519 5146 7.287810 AGTTAAACAATTGGACCACTAGTTCT 58.712 34.615 10.83 0.00 0.00 3.01
4522 5149 8.983702 TTTAGTTAAACAATTGGACCACTAGT 57.016 30.769 10.83 0.00 0.00 2.57
4602 5282 8.915057 AGGGAACAAATGTATATGAGAGATTG 57.085 34.615 0.00 0.00 0.00 2.67
4614 5294 5.222027 TGACTTGATGGAGGGAACAAATGTA 60.222 40.000 0.00 0.00 0.00 2.29
4615 5295 4.082125 GACTTGATGGAGGGAACAAATGT 58.918 43.478 0.00 0.00 0.00 2.71
4616 5296 4.081406 TGACTTGATGGAGGGAACAAATG 58.919 43.478 0.00 0.00 0.00 2.32
4617 5297 4.387026 TGACTTGATGGAGGGAACAAAT 57.613 40.909 0.00 0.00 0.00 2.32
4619 5299 3.588842 AGATGACTTGATGGAGGGAACAA 59.411 43.478 0.00 0.00 0.00 2.83
4621 5301 3.054802 ACAGATGACTTGATGGAGGGAAC 60.055 47.826 0.00 0.00 0.00 3.62
4622 5302 3.054875 CACAGATGACTTGATGGAGGGAA 60.055 47.826 0.00 0.00 0.00 3.97
4623 5303 2.502947 CACAGATGACTTGATGGAGGGA 59.497 50.000 0.00 0.00 0.00 4.20
4624 5304 2.421107 CCACAGATGACTTGATGGAGGG 60.421 54.545 0.00 0.00 0.00 4.30
4677 5357 6.873997 TGATAATAGAAGGAGAAGCAAACGA 58.126 36.000 0.00 0.00 0.00 3.85
4729 5409 1.123077 CAAGGATCGGGACAGGATGA 58.877 55.000 0.00 0.00 39.69 2.92
4768 5448 0.760567 ACCAGCTGACACCTCACTCA 60.761 55.000 17.39 0.00 0.00 3.41
4802 5482 1.137479 CTGGCCCCATTAAGCAACATG 59.863 52.381 0.00 0.00 0.00 3.21
4823 5503 8.692710 CAGTAATTAGGTAGTCCAACACTATCA 58.307 37.037 0.00 0.00 40.83 2.15
4847 5527 3.205338 TGACACCACATCTGACAAACAG 58.795 45.455 0.00 0.00 46.97 3.16
4852 5532 1.977129 TCCATGACACCACATCTGACA 59.023 47.619 0.00 0.00 0.00 3.58
4932 5614 9.913310 TGTATCTTTGTGGTCCAAATATATTCA 57.087 29.630 0.00 0.00 42.02 2.57
4990 5672 3.004106 GCATAGCTAGGCCAAATGTTCTG 59.996 47.826 19.47 0.00 0.00 3.02
5037 5720 7.174946 GGACTGGATCTCAAATTCTGTAAAACA 59.825 37.037 0.00 0.00 0.00 2.83
5041 5724 6.373005 TGGACTGGATCTCAAATTCTGTAA 57.627 37.500 0.00 0.00 0.00 2.41
5049 5732 4.597507 ACTAAGGTTGGACTGGATCTCAAA 59.402 41.667 0.00 0.00 0.00 2.69
5080 5763 2.490903 GCACCTTCAGCACATGAATCTT 59.509 45.455 0.00 0.00 46.71 2.40
5090 5773 1.753930 CACATATGGCACCTTCAGCA 58.246 50.000 7.80 0.00 0.00 4.41
5191 5874 5.500931 GCTCGATCAAATACAGCAGTGTAAC 60.501 44.000 0.00 0.00 42.54 2.50
5226 5909 1.772966 CGTAAACACAAACAAGCGCAG 59.227 47.619 11.47 3.78 0.00 5.18
5235 5918 6.684555 GCAAAAATTCAATGCGTAAACACAAA 59.315 30.769 0.00 0.00 0.00 2.83
5253 5936 3.310727 GCACTTGGCAGGCAAAAAT 57.689 47.368 11.12 0.00 43.97 1.82
5263 5947 3.896122 TCGAAAACTAAATGCACTTGGC 58.104 40.909 0.00 0.00 45.13 4.52
5300 5984 9.866798 TGCACAAAATATTGATAAAGCACATTA 57.133 25.926 0.00 0.00 38.94 1.90
5331 6044 3.925379 TGTTATCGTGCTCAACATCTGT 58.075 40.909 0.00 0.00 0.00 3.41
5400 6113 3.740044 AAAACATATGGAGCGTTCACG 57.260 42.857 7.80 0.00 43.27 4.35
5475 6188 3.340814 ACTGGAAAGATGTAGCTGTGG 57.659 47.619 0.00 0.00 0.00 4.17
5640 6353 1.373536 TGTTGGGCCCACTACCATAA 58.626 50.000 28.70 3.51 36.48 1.90
5654 6367 1.132262 GATGGGCGTGTGTAATGTTGG 59.868 52.381 0.00 0.00 0.00 3.77
5710 6423 4.553429 GTCAGTTTATTCGATTTTGCACCG 59.447 41.667 0.00 0.00 0.00 4.94
5781 6501 3.617706 CAGCAGCTACAAAGTCAGATCAG 59.382 47.826 0.00 0.00 0.00 2.90
5825 6545 4.159693 AGAAACTCGCCAGTGTATCATGTA 59.840 41.667 0.00 0.00 31.06 2.29
5830 6550 3.232213 TCAGAAACTCGCCAGTGTATC 57.768 47.619 0.00 0.00 31.06 2.24
5831 6551 3.895232 ATCAGAAACTCGCCAGTGTAT 57.105 42.857 0.00 0.00 31.06 2.29
5832 6552 3.678056 AATCAGAAACTCGCCAGTGTA 57.322 42.857 0.00 0.00 31.06 2.90
5833 6553 2.550830 AATCAGAAACTCGCCAGTGT 57.449 45.000 0.00 0.00 31.06 3.55
5834 6554 5.147162 GTTTTAATCAGAAACTCGCCAGTG 58.853 41.667 0.00 0.00 34.87 3.66
5835 6555 4.215613 GGTTTTAATCAGAAACTCGCCAGT 59.784 41.667 0.00 0.00 37.22 4.00
5836 6556 4.379499 GGGTTTTAATCAGAAACTCGCCAG 60.379 45.833 0.00 0.00 37.22 4.85
5853 6574 2.037121 GCCAGCAAATACAGTGGGTTTT 59.963 45.455 0.00 0.00 0.00 2.43
5859 6580 2.789208 CGATTGCCAGCAAATACAGTG 58.211 47.619 9.44 0.00 39.55 3.66
5875 6596 0.178068 AGTCCATAACCTGCGCGATT 59.822 50.000 12.10 0.00 0.00 3.34
5878 6599 1.206745 CGTAGTCCATAACCTGCGCG 61.207 60.000 0.00 0.00 0.00 6.86
5879 6600 1.488261 GCGTAGTCCATAACCTGCGC 61.488 60.000 0.00 0.00 36.28 6.09
5938 6659 1.994507 CTTCATCCGACGACGAGCCT 61.995 60.000 9.28 0.00 42.66 4.58
5941 6662 0.586748 CGACTTCATCCGACGACGAG 60.587 60.000 9.28 0.00 42.66 4.18
6097 6818 1.767681 GTCTCCATGATCTTGGCCTCT 59.232 52.381 20.32 0.00 36.66 3.69
6202 6923 9.678260 ATCTTGGATATGAGCAGGAAATAATAC 57.322 33.333 0.00 0.00 0.00 1.89
6203 6924 9.896645 GATCTTGGATATGAGCAGGAAATAATA 57.103 33.333 0.00 0.00 0.00 0.98
6204 6925 7.551974 CGATCTTGGATATGAGCAGGAAATAAT 59.448 37.037 0.00 0.00 0.00 1.28
6243 6964 0.604780 GGCACTCCGATCATCATGGG 60.605 60.000 0.00 0.00 0.00 4.00
6366 7087 5.336055 CCGATATGATCCTAGTCGAGCTTTT 60.336 44.000 8.02 0.00 34.46 2.27
6376 7097 5.298276 GCTTCCTCTACCGATATGATCCTAG 59.702 48.000 0.00 0.00 0.00 3.02
6421 7147 9.086336 CGGTTATTAGAATCCGTTGTTTTACTA 57.914 33.333 0.00 0.00 38.45 1.82
6424 7150 7.818930 ACTCGGTTATTAGAATCCGTTGTTTTA 59.181 33.333 0.00 0.00 42.95 1.52
6431 7157 4.643784 ACTCACTCGGTTATTAGAATCCGT 59.356 41.667 0.00 0.00 42.95 4.69
6524 7255 8.235092 ATGAGAAGCATGGATGGAAACAGTAAA 61.235 37.037 0.00 0.00 39.05 2.01
6591 7322 9.454859 ACTGATGATTGATACGATACATAGAGA 57.545 33.333 0.00 0.00 0.00 3.10
6669 7400 9.179909 CAGGTAAACACCAAATACATAATGGTA 57.820 33.333 0.00 0.00 45.45 3.25
6671 7402 8.287439 TCAGGTAAACACCAAATACATAATGG 57.713 34.615 0.00 0.00 40.16 3.16
6685 7416 6.638468 CAGCAGATTCTTTTTCAGGTAAACAC 59.362 38.462 0.00 0.00 0.00 3.32
6690 7426 5.702670 CAGACAGCAGATTCTTTTTCAGGTA 59.297 40.000 0.00 0.00 0.00 3.08
6691 7427 4.518211 CAGACAGCAGATTCTTTTTCAGGT 59.482 41.667 0.00 0.00 0.00 4.00
6693 7429 5.686159 ACAGACAGCAGATTCTTTTTCAG 57.314 39.130 0.00 0.00 0.00 3.02
6694 7430 6.095300 TGAAACAGACAGCAGATTCTTTTTCA 59.905 34.615 8.23 8.23 42.27 2.69
6695 7431 6.498304 TGAAACAGACAGCAGATTCTTTTTC 58.502 36.000 0.00 0.00 38.32 2.29
6697 7433 6.096001 AGTTGAAACAGACAGCAGATTCTTTT 59.904 34.615 0.00 0.00 0.00 2.27
6698 7434 5.591877 AGTTGAAACAGACAGCAGATTCTTT 59.408 36.000 0.00 0.00 0.00 2.52
6700 7436 4.712476 AGTTGAAACAGACAGCAGATTCT 58.288 39.130 0.00 0.00 0.00 2.40
6735 7482 1.377202 TGCTTGGCCAAGATCCGAC 60.377 57.895 42.96 26.33 40.79 4.79
6738 7485 0.322816 TCAGTGCTTGGCCAAGATCC 60.323 55.000 42.96 28.97 40.79 3.36
6854 7612 2.295909 GCTAGCTAGGTGAGATGAGGTG 59.704 54.545 22.10 0.00 0.00 4.00
6856 7614 2.591923 TGCTAGCTAGGTGAGATGAGG 58.408 52.381 22.10 0.00 0.00 3.86
6861 7619 3.020274 CTCTGTTGCTAGCTAGGTGAGA 58.980 50.000 22.10 7.61 0.00 3.27
6896 7654 0.674895 AAGAAAGCTCGCCGCAAGAT 60.675 50.000 0.00 0.00 42.61 2.40
6908 7666 1.068954 CCGCTTCTGGTGAAAGAAAGC 60.069 52.381 0.00 0.00 35.79 3.51
7169 7927 3.503800 ATCATCCATCCATCCACAGTG 57.496 47.619 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.