Multiple sequence alignment - TraesCS5A01G169200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G169200 chr5A 100.000 4105 0 0 1 4105 361445634 361449738 0.000000e+00 7581.0
1 TraesCS5A01G169200 chr5B 92.559 1196 46 21 837 2025 307880255 307881414 0.000000e+00 1676.0
2 TraesCS5A01G169200 chr5B 89.769 694 42 8 3356 4026 307886749 307887436 0.000000e+00 861.0
3 TraesCS5A01G169200 chr5B 95.285 403 15 2 2095 2493 307881773 307882175 1.610000e-178 636.0
4 TraesCS5A01G169200 chr5B 91.183 431 24 2 2486 2903 307882201 307882630 1.280000e-159 573.0
5 TraesCS5A01G169200 chr5B 94.249 313 17 1 158 470 307878706 307879017 1.030000e-130 477.0
6 TraesCS5A01G169200 chr5B 90.939 309 22 5 472 777 307879068 307879373 1.060000e-110 411.0
7 TraesCS5A01G169200 chr5B 91.584 202 8 6 1896 2096 307881415 307881608 1.880000e-68 270.0
8 TraesCS5A01G169200 chr5B 92.667 150 9 2 3185 3333 307884033 307884181 8.940000e-52 215.0
9 TraesCS5A01G169200 chr5B 91.429 105 2 6 3089 3190 307882627 307882727 1.990000e-28 137.0
10 TraesCS5A01G169200 chr5B 96.250 80 3 0 4026 4105 484894676 484894597 9.260000e-27 132.0
11 TraesCS5A01G169200 chr5D 91.426 933 40 12 3089 3984 271706958 271706029 0.000000e+00 1243.0
12 TraesCS5A01G169200 chr5D 96.892 740 22 1 812 1551 271717884 271717146 0.000000e+00 1238.0
13 TraesCS5A01G169200 chr5D 94.046 823 34 3 2095 2903 271707776 271706955 0.000000e+00 1234.0
14 TraesCS5A01G169200 chr5D 97.278 551 14 1 1547 2096 271708490 271707940 0.000000e+00 933.0
15 TraesCS5A01G169200 chr5D 95.033 302 12 3 467 767 271718467 271718168 4.800000e-129 472.0
16 TraesCS5A01G169200 chr5D 93.871 310 19 0 161 470 271718825 271718516 6.210000e-128 468.0
17 TraesCS5A01G169200 chr5D 78.926 242 31 13 2881 3114 469506741 469506512 3.310000e-31 147.0
18 TraesCS5A01G169200 chr5D 100.000 28 0 0 2950 2977 372307476 372307503 7.000000e-03 52.8
19 TraesCS5A01G169200 chr1A 91.003 678 59 2 1 677 361513786 361514462 0.000000e+00 913.0
20 TraesCS5A01G169200 chr1A 77.468 1185 180 55 1116 2249 557154151 557153003 2.690000e-176 628.0
21 TraesCS5A01G169200 chr1A 93.976 83 5 0 4023 4105 6910645 6910563 4.310000e-25 126.0
22 TraesCS5A01G169200 chr1D 90.708 678 61 2 1 677 289479670 289480346 0.000000e+00 902.0
23 TraesCS5A01G169200 chr1D 75.682 1649 244 91 1144 2709 464863400 464861826 0.000000e+00 678.0
24 TraesCS5A01G169200 chr1D 79.832 238 29 5 2882 3112 455639030 455638805 5.490000e-34 156.0
25 TraesCS5A01G169200 chr1D 92.941 85 6 0 4021 4105 419022108 419022192 1.550000e-24 124.0
26 TraesCS5A01G169200 chr1B 90.265 678 64 2 1 677 390711017 390711693 0.000000e+00 885.0
27 TraesCS5A01G169200 chr1B 78.088 1182 144 51 1604 2709 641630616 641629474 3.460000e-180 641.0
28 TraesCS5A01G169200 chr1B 79.130 230 43 5 2881 3110 41264510 41264734 1.980000e-33 154.0
29 TraesCS5A01G169200 chr1B 93.023 86 6 0 4020 4105 298409675 298409590 4.310000e-25 126.0
30 TraesCS5A01G169200 chr3B 85.062 241 22 7 1763 2001 648406319 648406547 2.470000e-57 233.0
31 TraesCS5A01G169200 chr3B 78.298 235 40 9 2881 3112 522474553 522474779 1.540000e-29 141.0
32 TraesCS5A01G169200 chr3B 77.406 239 35 9 2881 3112 572682070 572681844 1.550000e-24 124.0
33 TraesCS5A01G169200 chr3B 93.902 82 5 0 4024 4105 813012496 813012415 1.550000e-24 124.0
34 TraesCS5A01G169200 chr2A 81.780 236 32 8 2881 3115 176558173 176557948 1.950000e-43 187.0
35 TraesCS5A01G169200 chr2A 96.250 80 3 0 4026 4105 513866921 513866842 9.260000e-27 132.0
36 TraesCS5A01G169200 chr2A 91.011 89 8 0 4017 4105 47360528 47360616 2.000000e-23 121.0
37 TraesCS5A01G169200 chr2A 89.474 95 9 1 4011 4105 60763632 60763725 7.210000e-23 119.0
38 TraesCS5A01G169200 chrUn 79.149 235 37 10 2881 3111 359647896 359648122 7.110000e-33 152.0
39 TraesCS5A01G169200 chr6A 77.778 234 46 5 2881 3112 582803150 582802921 5.530000e-29 139.0
40 TraesCS5A01G169200 chr6A 84.932 73 11 0 2905 2977 577006949 577006877 1.580000e-09 75.0
41 TraesCS5A01G169200 chr2B 78.008 241 29 13 2881 3117 224579197 224578977 3.330000e-26 130.0
42 TraesCS5A01G169200 chr7A 77.637 237 34 9 2881 3110 689893351 689893575 4.310000e-25 126.0
43 TraesCS5A01G169200 chr6D 95.000 80 4 0 4026 4105 161718259 161718338 4.310000e-25 126.0
44 TraesCS5A01G169200 chr7B 77.434 226 31 10 2895 3112 232423 232210 2.590000e-22 117.0
45 TraesCS5A01G169200 chr2D 92.500 80 4 2 2922 3001 175806032 175805955 3.350000e-21 113.0
46 TraesCS5A01G169200 chr3D 81.443 97 17 1 2881 2977 120743727 120743822 1.220000e-10 78.7
47 TraesCS5A01G169200 chr4D 96.875 32 1 0 3863 3894 300236682 300236651 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G169200 chr5A 361445634 361449738 4104 False 7581.000000 7581 100.000000 1 4105 1 chr5A.!!$F1 4104
1 TraesCS5A01G169200 chr5B 307878706 307887436 8730 False 584.000000 1676 92.184889 158 4026 9 chr5B.!!$F1 3868
2 TraesCS5A01G169200 chr5D 271706029 271708490 2461 True 1136.666667 1243 94.250000 1547 3984 3 chr5D.!!$R2 2437
3 TraesCS5A01G169200 chr5D 271717146 271718825 1679 True 726.000000 1238 95.265333 161 1551 3 chr5D.!!$R3 1390
4 TraesCS5A01G169200 chr1A 361513786 361514462 676 False 913.000000 913 91.003000 1 677 1 chr1A.!!$F1 676
5 TraesCS5A01G169200 chr1A 557153003 557154151 1148 True 628.000000 628 77.468000 1116 2249 1 chr1A.!!$R2 1133
6 TraesCS5A01G169200 chr1D 289479670 289480346 676 False 902.000000 902 90.708000 1 677 1 chr1D.!!$F1 676
7 TraesCS5A01G169200 chr1D 464861826 464863400 1574 True 678.000000 678 75.682000 1144 2709 1 chr1D.!!$R2 1565
8 TraesCS5A01G169200 chr1B 390711017 390711693 676 False 885.000000 885 90.265000 1 677 1 chr1B.!!$F2 676
9 TraesCS5A01G169200 chr1B 641629474 641630616 1142 True 641.000000 641 78.088000 1604 2709 1 chr1B.!!$R2 1105

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.604578 CATCCCACTTTGCAACCTGG 59.395 55.000 12.86 12.86 0.0 4.45 F
283 284 1.203287 GTTGGAGGGCTTGAAGATTGC 59.797 52.381 0.00 0.00 0.0 3.56 F
1221 2161 1.310933 GCCATTGTGAGTGCCTCCTG 61.311 60.000 0.50 0.00 0.0 3.86 F
2214 3525 1.283793 CAGCAAACCAAGCCTGACG 59.716 57.895 0.00 0.00 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1614 2580 1.289530 ACTCCCCTGTTTCCACCAAAA 59.710 47.619 0.00 0.0 0.00 2.44 R
2029 3137 1.879575 ACACCTATCCTTGCCTAGCA 58.120 50.000 0.00 0.0 36.47 3.49 R
2856 4250 1.133199 TCCAAAAAGGCACATGGGTCT 60.133 47.619 0.00 0.0 37.29 3.85 R
3432 8694 0.599204 GCTGACGTCAAAGGGTTCGA 60.599 55.000 20.49 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.530460 ATAGGCATCCCACTTTGCAA 57.470 45.000 0.00 0.00 40.66 4.08
24 25 0.604578 CATCCCACTTTGCAACCTGG 59.395 55.000 12.86 12.86 0.00 4.45
35 36 2.665165 TGCAACCTGGACAACTCAAAT 58.335 42.857 0.00 0.00 0.00 2.32
57 58 2.806608 ACCAGAAGCAGTGCAAAATG 57.193 45.000 19.20 10.01 0.00 2.32
61 62 3.491276 CCAGAAGCAGTGCAAAATGTGAA 60.491 43.478 19.20 0.00 0.00 3.18
85 86 7.671495 ATTTTGCTTTCTTCAAACACAAGTT 57.329 28.000 0.00 0.00 40.40 2.66
89 90 5.650266 TGCTTTCTTCAAACACAAGTTCCTA 59.350 36.000 0.00 0.00 36.84 2.94
116 117 6.374565 GAAGATTCATTCTCTTCACATGGG 57.625 41.667 7.91 0.00 45.17 4.00
118 119 5.682659 AGATTCATTCTCTTCACATGGGAG 58.317 41.667 0.00 0.00 0.00 4.30
127 128 3.010027 TCTTCACATGGGAGCCACATTTA 59.990 43.478 0.00 0.00 35.80 1.40
129 130 3.979911 TCACATGGGAGCCACATTTATT 58.020 40.909 0.00 0.00 35.80 1.40
131 132 5.132502 TCACATGGGAGCCACATTTATTAG 58.867 41.667 0.00 0.00 35.80 1.73
140 141 6.373774 GGAGCCACATTTATTAGAGATCCATG 59.626 42.308 0.00 0.00 0.00 3.66
152 153 8.930846 ATTAGAGATCCATGAGGGTTTTAATG 57.069 34.615 0.00 0.00 38.11 1.90
216 217 2.642311 TGGTCAGGCAAATCCTCAGTTA 59.358 45.455 0.00 0.00 45.52 2.24
225 226 6.100279 AGGCAAATCCTCAGTTACATCATCTA 59.900 38.462 0.00 0.00 43.20 1.98
256 257 6.328410 TCATGATGACCAATAGAAGGATCAGT 59.672 38.462 0.00 0.00 0.00 3.41
265 266 8.164070 ACCAATAGAAGGATCAGTAAGTTTGTT 58.836 33.333 0.00 0.00 0.00 2.83
283 284 1.203287 GTTGGAGGGCTTGAAGATTGC 59.797 52.381 0.00 0.00 0.00 3.56
317 318 7.670559 TCATCATCAGAGAGATCATCTACACAT 59.329 37.037 0.00 0.00 38.84 3.21
352 353 9.260002 CTGCACTTTATTTACCAAACTTTTCAT 57.740 29.630 0.00 0.00 0.00 2.57
592 645 2.629617 CAATGCTTCCACCCAACTTCTT 59.370 45.455 0.00 0.00 0.00 2.52
655 709 8.902806 CCAATATATTTTTGACTACTCCTTGCA 58.097 33.333 0.00 0.00 0.00 4.08
703 757 4.816786 CCTTTTGGAAAAATTGCAGGTG 57.183 40.909 0.00 0.00 44.07 4.00
906 1835 3.880033 AACTGGGCCAGCTCTCCCT 62.880 63.158 33.04 9.26 43.04 4.20
917 1846 2.108970 AGCTCTCCCTTAACCCGTAAG 58.891 52.381 0.00 0.00 39.25 2.34
1090 2019 3.386237 GCCGCCACTCCTCTCACT 61.386 66.667 0.00 0.00 0.00 3.41
1221 2161 1.310933 GCCATTGTGAGTGCCTCCTG 61.311 60.000 0.50 0.00 0.00 3.86
1392 2340 3.056250 CGGTATCAAGATCTGGATCCTGG 60.056 52.174 16.23 8.65 38.58 4.45
1469 2434 3.411446 CTCCTGTTGGTTCATGCTTACA 58.589 45.455 0.00 0.00 34.23 2.41
1555 2520 3.906720 TCTACCCCATGACTAACTTGC 57.093 47.619 0.00 0.00 0.00 4.01
1614 2580 1.497286 TGGGTTTTAACAGGTGGAGCT 59.503 47.619 0.00 0.00 0.00 4.09
1761 2733 4.038522 TGAGTGTTATATGAGAGCTGCCTC 59.961 45.833 0.00 10.12 38.42 4.70
1875 2852 3.689872 TGTAGGATGGAGAGGTTAGCT 57.310 47.619 0.00 0.00 0.00 3.32
2029 3137 6.895204 TCCTAAGCAAACTTAATATTGGCCTT 59.105 34.615 3.32 0.00 37.91 4.35
2061 3169 5.025453 AGGATAGGTGTTTGGCATCAAAAT 58.975 37.500 0.00 0.00 43.56 1.82
2214 3525 1.283793 CAGCAAACCAAGCCTGACG 59.716 57.895 0.00 0.00 0.00 4.35
2229 3540 2.069273 CTGACGTCCTTCCATGTTGTC 58.931 52.381 14.12 0.00 0.00 3.18
2271 3610 5.239306 CGGTATGTCTATTTGATGGTTGCAT 59.761 40.000 0.00 0.00 0.00 3.96
2387 3732 8.987599 TTTTAAGATATTTCGCATGATCGTTC 57.012 30.769 0.00 0.00 0.00 3.95
2428 3773 2.263077 CCACTTGCAGTCGTATGAGTC 58.737 52.381 0.00 0.00 0.00 3.36
2470 3816 6.541278 TCTGAAATCCACTATTCAAGCTCATG 59.459 38.462 0.00 0.00 35.31 3.07
2608 3989 1.490490 AGAGCTTGGGTTCAGTGACAA 59.510 47.619 0.00 0.00 0.00 3.18
2616 3997 2.681344 GGGTTCAGTGACAAAGACGTTT 59.319 45.455 0.00 0.00 0.00 3.60
2678 4059 3.993081 CAGCAAGTGATTCGAAAGAGAGT 59.007 43.478 0.00 0.00 43.69 3.24
2701 4082 4.907879 AATAGCTGGTAAATCTGCAAGC 57.092 40.909 0.00 0.00 34.63 4.01
2709 4090 5.509498 TGGTAAATCTGCAAGCTCCTTATT 58.491 37.500 0.00 0.00 0.00 1.40
2783 4177 4.990543 TTGTGTAATTCGACAAGCTCTG 57.009 40.909 0.00 0.00 0.00 3.35
2807 4201 6.179756 GTGTGTGGGATATATTATGGATGCA 58.820 40.000 0.00 0.00 0.00 3.96
2852 4246 9.555727 TTTTGCTAGTTGTCTGATAAACTAAGT 57.444 29.630 13.52 0.00 38.17 2.24
2865 4259 8.319057 TGATAAACTAAGTGATAGACCCATGT 57.681 34.615 0.00 0.00 35.47 3.21
2894 4288 2.235402 TGGATTGTACTCCTTCCGTTCC 59.765 50.000 3.08 0.00 36.20 3.62
2895 4289 2.235402 GGATTGTACTCCTTCCGTTCCA 59.765 50.000 0.00 0.00 32.18 3.53
2896 4290 3.118371 GGATTGTACTCCTTCCGTTCCAT 60.118 47.826 0.00 0.00 32.18 3.41
2898 4292 5.395990 GGATTGTACTCCTTCCGTTCCATAA 60.396 44.000 0.00 0.00 32.18 1.90
2899 4293 5.687166 TTGTACTCCTTCCGTTCCATAAT 57.313 39.130 0.00 0.00 0.00 1.28
2900 4294 5.018539 TGTACTCCTTCCGTTCCATAATG 57.981 43.478 0.00 0.00 0.00 1.90
2901 4295 4.468510 TGTACTCCTTCCGTTCCATAATGT 59.531 41.667 0.00 0.00 0.00 2.71
2902 4296 5.657745 TGTACTCCTTCCGTTCCATAATGTA 59.342 40.000 0.00 0.00 0.00 2.29
2903 4297 5.277857 ACTCCTTCCGTTCCATAATGTAG 57.722 43.478 0.00 0.00 0.00 2.74
2904 4298 4.715297 ACTCCTTCCGTTCCATAATGTAGT 59.285 41.667 0.00 0.00 0.00 2.73
2905 4299 5.189145 ACTCCTTCCGTTCCATAATGTAGTT 59.811 40.000 0.00 0.00 0.00 2.24
2906 4300 5.667466 TCCTTCCGTTCCATAATGTAGTTC 58.333 41.667 0.00 0.00 0.00 3.01
2907 4301 5.188163 TCCTTCCGTTCCATAATGTAGTTCA 59.812 40.000 0.00 0.00 0.00 3.18
2908 4302 6.055588 CCTTCCGTTCCATAATGTAGTTCAT 58.944 40.000 0.00 0.00 38.57 2.57
2909 4303 7.070198 TCCTTCCGTTCCATAATGTAGTTCATA 59.930 37.037 0.00 0.00 35.48 2.15
2910 4304 7.713507 CCTTCCGTTCCATAATGTAGTTCATAA 59.286 37.037 0.00 0.00 35.48 1.90
2911 4305 9.104965 CTTCCGTTCCATAATGTAGTTCATAAA 57.895 33.333 0.00 0.00 35.48 1.40
2912 4306 8.657074 TCCGTTCCATAATGTAGTTCATAAAG 57.343 34.615 0.00 0.00 35.48 1.85
2913 4307 8.479689 TCCGTTCCATAATGTAGTTCATAAAGA 58.520 33.333 0.00 0.00 35.48 2.52
2914 4308 9.273016 CCGTTCCATAATGTAGTTCATAAAGAT 57.727 33.333 0.00 0.00 35.48 2.40
2941 4335 9.936759 TTTTTGGAAAGTCAGAATTTACAAACT 57.063 25.926 26.25 0.00 45.52 2.66
2942 4336 9.936759 TTTTGGAAAGTCAGAATTTACAAACTT 57.063 25.926 26.25 0.00 45.52 2.66
2943 4337 9.936759 TTTGGAAAGTCAGAATTTACAAACTTT 57.063 25.926 23.77 4.13 42.64 2.66
3035 4429 8.317891 TGAAAACACGTCTTATGATGTATTGT 57.682 30.769 3.34 0.00 40.17 2.71
3036 4430 8.227119 TGAAAACACGTCTTATGATGTATTGTG 58.773 33.333 3.34 0.00 40.17 3.33
3037 4431 7.667043 AAACACGTCTTATGATGTATTGTGT 57.333 32.000 3.34 0.00 40.17 3.72
3038 4432 8.766000 AAACACGTCTTATGATGTATTGTGTA 57.234 30.769 3.34 0.00 40.17 2.90
3039 4433 8.766000 AACACGTCTTATGATGTATTGTGTAA 57.234 30.769 3.34 0.00 40.17 2.41
3040 4434 8.942338 ACACGTCTTATGATGTATTGTGTAAT 57.058 30.769 3.34 0.00 40.17 1.89
3041 4435 9.378551 ACACGTCTTATGATGTATTGTGTAATT 57.621 29.630 3.34 0.00 40.17 1.40
3245 5955 9.399403 GAAATTGGAACATCTACTTCAACTTTC 57.601 33.333 0.00 0.00 39.30 2.62
3267 5977 3.351794 TTTAACACCTGGACACACACA 57.648 42.857 0.00 0.00 0.00 3.72
3322 6032 3.605749 CTTTCCCTCGCTTCCGCCA 62.606 63.158 0.00 0.00 0.00 5.69
3399 8661 1.815421 CTACACATGGTCGCTGGCC 60.815 63.158 0.00 0.00 0.00 5.36
3432 8694 1.143183 CCTATACGGCCAGCGTTGT 59.857 57.895 2.24 0.00 0.00 3.32
3437 8699 4.072088 CGGCCAGCGTTGTCGAAC 62.072 66.667 2.24 0.00 39.71 3.95
3557 8833 3.102052 TCAGTTCTTTGACGGTGGTAC 57.898 47.619 0.00 0.00 0.00 3.34
3566 8842 1.870055 GACGGTGGTACTCGCCAGAA 61.870 60.000 12.54 0.00 46.14 3.02
3592 8868 5.239306 TGATTGGCTCGCTTTATTAGGATTG 59.761 40.000 0.00 0.00 0.00 2.67
3607 8883 1.005924 GGATTGTTCCCCTGGTGATGT 59.994 52.381 0.00 0.00 35.84 3.06
3627 8903 2.684374 GTCTAGGGTTCTTCGTCCTCTC 59.316 54.545 0.00 0.00 32.46 3.20
3699 8987 1.448922 ATCCTCTCCTACTGCGACGC 61.449 60.000 14.19 14.19 0.00 5.19
3871 9162 5.714333 TCCAAAGCAAATAAAGCCAGATGTA 59.286 36.000 0.00 0.00 0.00 2.29
3952 9244 4.298332 ACGAGTTTCCAACATTTGATTGC 58.702 39.130 0.00 0.00 0.00 3.56
3963 9255 7.814107 TCCAACATTTGATTGCTAATGAAAGTC 59.186 33.333 0.00 0.00 38.84 3.01
4026 9318 5.799213 AGGTGAAGATGGAAGAACTAAGTG 58.201 41.667 0.00 0.00 0.00 3.16
4027 9319 5.308237 AGGTGAAGATGGAAGAACTAAGTGT 59.692 40.000 0.00 0.00 0.00 3.55
4028 9320 6.497259 AGGTGAAGATGGAAGAACTAAGTGTA 59.503 38.462 0.00 0.00 0.00 2.90
4029 9321 6.814146 GGTGAAGATGGAAGAACTAAGTGTAG 59.186 42.308 0.00 0.00 0.00 2.74
4030 9322 7.309867 GGTGAAGATGGAAGAACTAAGTGTAGA 60.310 40.741 0.00 0.00 0.00 2.59
4031 9323 8.088981 GTGAAGATGGAAGAACTAAGTGTAGAA 58.911 37.037 0.00 0.00 0.00 2.10
4032 9324 8.307483 TGAAGATGGAAGAACTAAGTGTAGAAG 58.693 37.037 0.00 0.00 0.00 2.85
4033 9325 7.784470 AGATGGAAGAACTAAGTGTAGAAGT 57.216 36.000 0.00 0.00 0.00 3.01
4034 9326 7.607250 AGATGGAAGAACTAAGTGTAGAAGTG 58.393 38.462 0.00 0.00 0.00 3.16
4035 9327 5.539048 TGGAAGAACTAAGTGTAGAAGTGC 58.461 41.667 0.00 0.00 0.00 4.40
4036 9328 5.069914 TGGAAGAACTAAGTGTAGAAGTGCA 59.930 40.000 0.00 0.00 0.00 4.57
4037 9329 6.166982 GGAAGAACTAAGTGTAGAAGTGCAT 58.833 40.000 0.00 0.00 0.00 3.96
4038 9330 6.091441 GGAAGAACTAAGTGTAGAAGTGCATG 59.909 42.308 0.00 0.00 0.00 4.06
4039 9331 6.102897 AGAACTAAGTGTAGAAGTGCATGT 57.897 37.500 0.00 0.00 0.00 3.21
4040 9332 6.525629 AGAACTAAGTGTAGAAGTGCATGTT 58.474 36.000 0.00 0.00 0.00 2.71
4041 9333 6.647067 AGAACTAAGTGTAGAAGTGCATGTTC 59.353 38.462 0.00 0.00 0.00 3.18
4042 9334 6.102897 ACTAAGTGTAGAAGTGCATGTTCT 57.897 37.500 16.08 16.08 37.94 3.01
4043 9335 7.228314 ACTAAGTGTAGAAGTGCATGTTCTA 57.772 36.000 14.43 14.43 35.78 2.10
4044 9336 7.667557 ACTAAGTGTAGAAGTGCATGTTCTAA 58.332 34.615 18.23 9.65 38.06 2.10
4045 9337 6.787085 AAGTGTAGAAGTGCATGTTCTAAC 57.213 37.500 18.23 17.04 38.06 2.34
4046 9338 5.238583 AGTGTAGAAGTGCATGTTCTAACC 58.761 41.667 18.23 13.19 38.06 2.85
4047 9339 4.994852 GTGTAGAAGTGCATGTTCTAACCA 59.005 41.667 18.23 12.52 38.06 3.67
4048 9340 5.468746 GTGTAGAAGTGCATGTTCTAACCAA 59.531 40.000 18.23 6.77 38.06 3.67
4049 9341 6.149474 GTGTAGAAGTGCATGTTCTAACCAAT 59.851 38.462 18.23 0.00 38.06 3.16
4050 9342 5.633830 AGAAGTGCATGTTCTAACCAATG 57.366 39.130 11.52 0.00 32.29 2.82
4051 9343 3.855689 AGTGCATGTTCTAACCAATGC 57.144 42.857 9.88 9.88 44.49 3.56
4055 9347 3.253230 GCATGTTCTAACCAATGCAACC 58.747 45.455 11.28 0.00 43.84 3.77
4056 9348 3.305950 GCATGTTCTAACCAATGCAACCA 60.306 43.478 11.28 0.00 43.84 3.67
4057 9349 4.798924 GCATGTTCTAACCAATGCAACCAA 60.799 41.667 11.28 0.00 43.84 3.67
4058 9350 5.295950 CATGTTCTAACCAATGCAACCAAA 58.704 37.500 0.00 0.00 0.00 3.28
4059 9351 5.344743 TGTTCTAACCAATGCAACCAAAA 57.655 34.783 0.00 0.00 0.00 2.44
4060 9352 5.355596 TGTTCTAACCAATGCAACCAAAAG 58.644 37.500 0.00 0.00 0.00 2.27
4061 9353 5.127845 TGTTCTAACCAATGCAACCAAAAGA 59.872 36.000 0.00 0.00 0.00 2.52
4062 9354 6.183360 TGTTCTAACCAATGCAACCAAAAGAT 60.183 34.615 0.00 0.00 0.00 2.40
4063 9355 6.024552 TCTAACCAATGCAACCAAAAGATC 57.975 37.500 0.00 0.00 0.00 2.75
4064 9356 3.302365 ACCAATGCAACCAAAAGATCG 57.698 42.857 0.00 0.00 0.00 3.69
4065 9357 2.890311 ACCAATGCAACCAAAAGATCGA 59.110 40.909 0.00 0.00 0.00 3.59
4066 9358 3.511146 ACCAATGCAACCAAAAGATCGAT 59.489 39.130 0.00 0.00 0.00 3.59
4067 9359 4.704540 ACCAATGCAACCAAAAGATCGATA 59.295 37.500 0.00 0.00 0.00 2.92
4068 9360 5.360714 ACCAATGCAACCAAAAGATCGATAT 59.639 36.000 0.00 0.00 0.00 1.63
4069 9361 5.688621 CCAATGCAACCAAAAGATCGATATG 59.311 40.000 0.00 0.00 0.00 1.78
4070 9362 6.459985 CCAATGCAACCAAAAGATCGATATGA 60.460 38.462 0.00 0.00 0.00 2.15
4071 9363 6.889301 ATGCAACCAAAAGATCGATATGAT 57.111 33.333 0.00 0.00 41.06 2.45
4072 9364 6.063640 TGCAACCAAAAGATCGATATGATG 57.936 37.500 0.00 0.00 37.47 3.07
4073 9365 5.821995 TGCAACCAAAAGATCGATATGATGA 59.178 36.000 0.00 0.00 37.47 2.92
4074 9366 6.318396 TGCAACCAAAAGATCGATATGATGAA 59.682 34.615 0.00 0.00 37.47 2.57
4075 9367 7.148103 TGCAACCAAAAGATCGATATGATGAAA 60.148 33.333 0.00 0.00 37.47 2.69
4076 9368 7.377928 GCAACCAAAAGATCGATATGATGAAAG 59.622 37.037 0.00 0.00 37.47 2.62
4077 9369 8.615211 CAACCAAAAGATCGATATGATGAAAGA 58.385 33.333 0.00 0.00 37.47 2.52
4078 9370 8.375608 ACCAAAAGATCGATATGATGAAAGAG 57.624 34.615 0.00 0.00 37.47 2.85
4079 9371 8.206867 ACCAAAAGATCGATATGATGAAAGAGA 58.793 33.333 0.00 0.00 37.47 3.10
4080 9372 8.494347 CCAAAAGATCGATATGATGAAAGAGAC 58.506 37.037 0.00 0.00 37.47 3.36
4081 9373 9.258826 CAAAAGATCGATATGATGAAAGAGACT 57.741 33.333 0.00 0.00 37.47 3.24
4084 9376 8.279970 AGATCGATATGATGAAAGAGACTAGG 57.720 38.462 0.00 0.00 37.47 3.02
4085 9377 6.260870 TCGATATGATGAAAGAGACTAGGC 57.739 41.667 0.00 0.00 0.00 3.93
4086 9378 5.770162 TCGATATGATGAAAGAGACTAGGCA 59.230 40.000 0.00 0.00 0.00 4.75
4087 9379 6.072230 TCGATATGATGAAAGAGACTAGGCAG 60.072 42.308 0.00 0.00 0.00 4.85
4088 9380 3.533606 TGATGAAAGAGACTAGGCAGC 57.466 47.619 0.00 0.00 0.00 5.25
4089 9381 2.833943 TGATGAAAGAGACTAGGCAGCA 59.166 45.455 0.00 0.00 0.00 4.41
4090 9382 2.751166 TGAAAGAGACTAGGCAGCAC 57.249 50.000 0.00 0.00 0.00 4.40
4091 9383 1.970640 TGAAAGAGACTAGGCAGCACA 59.029 47.619 0.00 0.00 0.00 4.57
4092 9384 2.568956 TGAAAGAGACTAGGCAGCACAT 59.431 45.455 0.00 0.00 0.00 3.21
4093 9385 3.008375 TGAAAGAGACTAGGCAGCACATT 59.992 43.478 0.00 0.00 0.00 2.71
4094 9386 4.222810 TGAAAGAGACTAGGCAGCACATTA 59.777 41.667 0.00 0.00 0.00 1.90
4095 9387 5.104776 TGAAAGAGACTAGGCAGCACATTAT 60.105 40.000 0.00 0.00 0.00 1.28
4096 9388 6.098266 TGAAAGAGACTAGGCAGCACATTATA 59.902 38.462 0.00 0.00 0.00 0.98
4097 9389 5.461032 AGAGACTAGGCAGCACATTATAC 57.539 43.478 0.00 0.00 0.00 1.47
4098 9390 4.022762 AGAGACTAGGCAGCACATTATACG 60.023 45.833 0.00 0.00 0.00 3.06
4099 9391 3.637229 AGACTAGGCAGCACATTATACGT 59.363 43.478 0.00 0.00 0.00 3.57
4100 9392 3.978687 ACTAGGCAGCACATTATACGTC 58.021 45.455 0.00 0.00 0.00 4.34
4101 9393 2.979814 AGGCAGCACATTATACGTCA 57.020 45.000 0.00 0.00 0.00 4.35
4102 9394 3.260475 AGGCAGCACATTATACGTCAA 57.740 42.857 0.00 0.00 0.00 3.18
4103 9395 2.936498 AGGCAGCACATTATACGTCAAC 59.064 45.455 0.00 0.00 0.00 3.18
4104 9396 2.675844 GGCAGCACATTATACGTCAACA 59.324 45.455 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.110442 TTGTCCAGGTTGCAAAGTGG 58.890 50.000 18.45 18.45 33.35 4.00
13 14 2.136298 TGAGTTGTCCAGGTTGCAAA 57.864 45.000 0.00 0.00 0.00 3.68
19 20 3.222603 GGTTCATTTGAGTTGTCCAGGT 58.777 45.455 0.00 0.00 0.00 4.00
24 25 4.036734 TGCTTCTGGTTCATTTGAGTTGTC 59.963 41.667 0.00 0.00 0.00 3.18
35 36 1.761449 TTTGCACTGCTTCTGGTTCA 58.239 45.000 1.98 0.00 0.00 3.18
57 58 7.059448 TGTGTTTGAAGAAAGCAAAATTCAC 57.941 32.000 0.00 0.00 37.03 3.18
61 62 7.148423 GGAACTTGTGTTTGAAGAAAGCAAAAT 60.148 33.333 0.00 0.00 37.03 1.82
70 71 7.873719 TCAATTAGGAACTTGTGTTTGAAGA 57.126 32.000 0.00 0.00 41.75 2.87
113 114 5.221925 GGATCTCTAATAAATGTGGCTCCCA 60.222 44.000 0.00 0.00 0.00 4.37
116 117 7.164122 TCATGGATCTCTAATAAATGTGGCTC 58.836 38.462 0.00 0.00 0.00 4.70
118 119 6.373774 CCTCATGGATCTCTAATAAATGTGGC 59.626 42.308 0.00 0.00 34.57 5.01
127 128 7.449704 GCATTAAAACCCTCATGGATCTCTAAT 59.550 37.037 0.00 0.00 38.00 1.73
129 130 6.126507 TGCATTAAAACCCTCATGGATCTCTA 60.127 38.462 0.00 0.00 38.00 2.43
131 132 4.889409 TGCATTAAAACCCTCATGGATCTC 59.111 41.667 0.00 0.00 38.00 2.75
152 153 5.409826 CCCTTCGGAGATAAAATCTATGTGC 59.590 44.000 0.00 0.00 40.38 4.57
181 182 3.243704 GCCTGACCATGACATCTCTCTAC 60.244 52.174 0.00 0.00 0.00 2.59
216 217 6.699366 GTCATCATGACCTGATAGATGATGT 58.301 40.000 6.50 0.00 44.58 3.06
256 257 3.586470 TCAAGCCCTCCAACAAACTTA 57.414 42.857 0.00 0.00 0.00 2.24
265 266 0.405198 TGCAATCTTCAAGCCCTCCA 59.595 50.000 0.00 0.00 0.00 3.86
283 284 8.664211 TGATCTCTCTGATGATGATCTTTTTG 57.336 34.615 0.00 0.00 35.14 2.44
317 318 8.972458 TGGTAAATAAAGTGCAGCAGATATTA 57.028 30.769 0.00 0.00 0.00 0.98
352 353 9.734620 CAAGAACTTTGACAAAGATGATGTTTA 57.265 29.630 30.01 0.00 41.02 2.01
475 528 0.971386 AAAGAATGCAGCCCCACTTG 59.029 50.000 0.00 0.00 0.00 3.16
592 645 0.178995 TTGTTGAGGTGCATCAGCCA 60.179 50.000 0.00 0.00 41.13 4.75
655 709 3.864789 ACAAGGACAGTCTCCACATTT 57.135 42.857 0.00 0.00 42.46 2.32
688 742 1.970640 AGGACCACCTGCAATTTTTCC 59.029 47.619 0.00 0.00 45.92 3.13
881 1810 1.675641 GCTGGCCCAGTTGGTACAG 60.676 63.158 13.35 12.41 41.42 2.74
906 1835 1.300634 GCTGGGCCTTACGGGTTAA 59.699 57.895 4.53 0.00 37.43 2.01
1221 2161 1.327764 CGAAATTTAGAGCGCCAGGAC 59.672 52.381 2.29 0.00 0.00 3.85
1392 2340 1.457346 CACTCATTTCCCAGGCACTC 58.543 55.000 0.00 0.00 34.60 3.51
1614 2580 1.289530 ACTCCCCTGTTTCCACCAAAA 59.710 47.619 0.00 0.00 0.00 2.44
1761 2733 4.967036 AGTCCTTCTTCTCCTGTTTGAAG 58.033 43.478 0.00 0.00 40.53 3.02
1875 2852 4.822685 TTATTACACGGGGAGTAAGCAA 57.177 40.909 0.00 0.00 35.18 3.91
2029 3137 1.879575 ACACCTATCCTTGCCTAGCA 58.120 50.000 0.00 0.00 36.47 3.49
2061 3169 2.946329 TGCTGGTTCGCTTTGTTTTCTA 59.054 40.909 0.00 0.00 0.00 2.10
2214 3525 5.402398 GCAAATAAGACAACATGGAAGGAC 58.598 41.667 0.00 0.00 0.00 3.85
2387 3732 9.654663 AAGTGGCAGAACTTTAACTATTACTAG 57.345 33.333 0.00 0.00 37.05 2.57
2428 3773 3.942829 TCAGACATCAAAGCTGGTAAGG 58.057 45.455 0.00 0.00 0.00 2.69
2493 3873 5.291971 AGCAGCAACAAACCAAGAAATTAG 58.708 37.500 0.00 0.00 0.00 1.73
2495 3875 4.122046 GAGCAGCAACAAACCAAGAAATT 58.878 39.130 0.00 0.00 0.00 1.82
2536 3917 6.770303 TCTGGATTGTACAAGAACAACATGAA 59.230 34.615 14.65 0.00 41.89 2.57
2608 3989 2.413310 AGGTGTGACCAAAACGTCTT 57.587 45.000 0.00 0.00 41.95 3.01
2616 3997 1.694150 CTCCTCTGAAGGTGTGACCAA 59.306 52.381 0.00 0.00 41.95 3.67
2678 4059 6.122277 AGCTTGCAGATTTACCAGCTATTTA 58.878 36.000 3.50 0.00 0.00 1.40
2783 4177 6.179756 TGCATCCATAATATATCCCACACAC 58.820 40.000 0.00 0.00 0.00 3.82
2807 4201 5.230942 CAAAATAACACGAGACACTCCTCT 58.769 41.667 0.00 0.00 0.00 3.69
2852 4246 3.737559 AAAAGGCACATGGGTCTATCA 57.262 42.857 0.41 0.00 0.00 2.15
2856 4250 1.133199 TCCAAAAAGGCACATGGGTCT 60.133 47.619 0.00 0.00 37.29 3.85
2865 4259 4.112634 AGGAGTACAATCCAAAAAGGCA 57.887 40.909 4.14 0.00 42.26 4.75
2915 4309 9.936759 AGTTTGTAAATTCTGACTTTCCAAAAA 57.063 25.926 11.03 0.00 27.78 1.94
2916 4310 9.936759 AAGTTTGTAAATTCTGACTTTCCAAAA 57.063 25.926 11.03 3.39 27.78 2.44
2917 4311 9.936759 AAAGTTTGTAAATTCTGACTTTCCAAA 57.063 25.926 6.99 6.99 33.46 3.28
3009 4403 8.946085 ACAATACATCATAAGACGTGTTTTCAT 58.054 29.630 2.22 0.00 0.00 2.57
3010 4404 8.227119 CACAATACATCATAAGACGTGTTTTCA 58.773 33.333 2.22 0.00 0.00 2.69
3011 4405 8.227791 ACACAATACATCATAAGACGTGTTTTC 58.772 33.333 2.22 0.00 31.39 2.29
3012 4406 8.094798 ACACAATACATCATAAGACGTGTTTT 57.905 30.769 2.22 0.00 31.39 2.43
3013 4407 7.667043 ACACAATACATCATAAGACGTGTTT 57.333 32.000 2.22 0.00 31.39 2.83
3014 4408 8.766000 TTACACAATACATCATAAGACGTGTT 57.234 30.769 2.58 2.58 36.54 3.32
3015 4409 8.942338 ATTACACAATACATCATAAGACGTGT 57.058 30.769 0.00 0.00 38.51 4.49
3111 4508 5.183228 CAATACTACCTCCGTTCCACAATT 58.817 41.667 0.00 0.00 0.00 2.32
3148 4547 3.575630 CGTTCGATCAAAGGACAGAAGA 58.424 45.455 0.00 0.00 0.00 2.87
3149 4548 2.668457 CCGTTCGATCAAAGGACAGAAG 59.332 50.000 0.00 0.00 35.72 2.85
3150 4549 2.297880 TCCGTTCGATCAAAGGACAGAA 59.702 45.455 7.92 0.00 37.70 3.02
3151 4550 1.890489 TCCGTTCGATCAAAGGACAGA 59.110 47.619 7.92 0.00 37.70 3.41
3245 5955 3.692101 TGTGTGTGTCCAGGTGTTAAAAG 59.308 43.478 0.00 0.00 0.00 2.27
3300 6010 1.302511 GGAAGCGAGGGAAAGCACA 60.303 57.895 0.00 0.00 35.48 4.57
3322 6032 1.602311 CACCAGAGAGCAAAGCAACT 58.398 50.000 0.00 0.00 0.00 3.16
3432 8694 0.599204 GCTGACGTCAAAGGGTTCGA 60.599 55.000 20.49 0.00 0.00 3.71
3437 8699 3.423154 GCCGCTGACGTCAAAGGG 61.423 66.667 29.01 24.46 37.70 3.95
3458 8720 2.018542 GCAACGGCTATGTACAGGAA 57.981 50.000 0.33 0.00 36.96 3.36
3501 8777 2.380084 TGGCTTACCTGACGATCAAC 57.620 50.000 0.00 0.00 36.63 3.18
3566 8842 5.376625 TCCTAATAAAGCGAGCCAATCAAT 58.623 37.500 0.00 0.00 0.00 2.57
3592 8868 1.486726 CCTAGACATCACCAGGGGAAC 59.513 57.143 0.00 0.00 0.00 3.62
3607 8883 2.680221 CGAGAGGACGAAGAACCCTAGA 60.680 54.545 0.00 0.00 35.09 2.43
3699 8987 1.672356 CAAGACTTGAGGCACCCCG 60.672 63.158 9.76 0.00 35.76 5.73
3779 9067 2.530460 TTCCACCCCATGATTTCCAG 57.470 50.000 0.00 0.00 0.00 3.86
3871 9162 5.699915 CAGATGTGTCTCAGACAGAAAACAT 59.300 40.000 8.09 7.68 43.57 2.71
3918 9209 7.365840 GTTGGAAACTCGTTCTATTCAGAAT 57.634 36.000 0.20 0.20 45.32 2.40
3919 9210 6.780706 GTTGGAAACTCGTTCTATTCAGAA 57.219 37.500 0.00 0.00 45.32 3.02
3938 9230 7.599621 TGACTTTCATTAGCAATCAAATGTTGG 59.400 33.333 0.00 0.00 0.00 3.77
3952 9244 5.121811 CACTCCTCCCATGACTTTCATTAG 58.878 45.833 0.00 0.00 34.28 1.73
3963 9255 2.286425 ACCCCCACTCCTCCCATG 60.286 66.667 0.00 0.00 0.00 3.66
4026 9318 6.546395 CATTGGTTAGAACATGCACTTCTAC 58.454 40.000 13.05 9.50 31.32 2.59
4027 9319 5.123820 GCATTGGTTAGAACATGCACTTCTA 59.876 40.000 10.39 10.39 37.89 2.10
4028 9320 4.082571 GCATTGGTTAGAACATGCACTTCT 60.083 41.667 12.06 12.06 37.89 2.85
4029 9321 4.168760 GCATTGGTTAGAACATGCACTTC 58.831 43.478 11.01 0.00 37.89 3.01
4030 9322 3.573538 TGCATTGGTTAGAACATGCACTT 59.426 39.130 13.47 0.00 40.89 3.16
4031 9323 3.156293 TGCATTGGTTAGAACATGCACT 58.844 40.909 13.47 0.00 40.89 4.40
4032 9324 3.574284 TGCATTGGTTAGAACATGCAC 57.426 42.857 13.47 0.00 40.89 4.57
4033 9325 3.305950 GGTTGCATTGGTTAGAACATGCA 60.306 43.478 13.47 13.47 42.74 3.96
4034 9326 3.253230 GGTTGCATTGGTTAGAACATGC 58.747 45.455 9.59 9.59 38.24 4.06
4035 9327 4.517952 TGGTTGCATTGGTTAGAACATG 57.482 40.909 0.00 0.00 0.00 3.21
4036 9328 5.543507 TTTGGTTGCATTGGTTAGAACAT 57.456 34.783 0.00 0.00 0.00 2.71
4037 9329 5.127845 TCTTTTGGTTGCATTGGTTAGAACA 59.872 36.000 0.00 0.00 0.00 3.18
4038 9330 5.596845 TCTTTTGGTTGCATTGGTTAGAAC 58.403 37.500 0.00 0.00 0.00 3.01
4039 9331 5.860941 TCTTTTGGTTGCATTGGTTAGAA 57.139 34.783 0.00 0.00 0.00 2.10
4040 9332 5.335583 CGATCTTTTGGTTGCATTGGTTAGA 60.336 40.000 0.00 0.00 0.00 2.10
4041 9333 4.858692 CGATCTTTTGGTTGCATTGGTTAG 59.141 41.667 0.00 0.00 0.00 2.34
4042 9334 4.520874 TCGATCTTTTGGTTGCATTGGTTA 59.479 37.500 0.00 0.00 0.00 2.85
4043 9335 3.320541 TCGATCTTTTGGTTGCATTGGTT 59.679 39.130 0.00 0.00 0.00 3.67
4044 9336 2.890311 TCGATCTTTTGGTTGCATTGGT 59.110 40.909 0.00 0.00 0.00 3.67
4045 9337 3.574284 TCGATCTTTTGGTTGCATTGG 57.426 42.857 0.00 0.00 0.00 3.16
4046 9338 6.497437 TCATATCGATCTTTTGGTTGCATTG 58.503 36.000 0.00 0.00 0.00 2.82
4047 9339 6.698008 TCATATCGATCTTTTGGTTGCATT 57.302 33.333 0.00 0.00 0.00 3.56
4048 9340 6.487668 TCATCATATCGATCTTTTGGTTGCAT 59.512 34.615 0.00 0.00 29.21 3.96
4049 9341 5.821995 TCATCATATCGATCTTTTGGTTGCA 59.178 36.000 0.00 0.00 29.21 4.08
4050 9342 6.304356 TCATCATATCGATCTTTTGGTTGC 57.696 37.500 0.00 0.00 29.21 4.17
4051 9343 8.615211 TCTTTCATCATATCGATCTTTTGGTTG 58.385 33.333 0.00 0.00 29.21 3.77
4052 9344 8.737168 TCTTTCATCATATCGATCTTTTGGTT 57.263 30.769 0.00 0.00 29.21 3.67
4053 9345 8.206867 TCTCTTTCATCATATCGATCTTTTGGT 58.793 33.333 0.00 0.00 29.21 3.67
4054 9346 8.494347 GTCTCTTTCATCATATCGATCTTTTGG 58.506 37.037 0.00 0.00 29.21 3.28
4055 9347 9.258826 AGTCTCTTTCATCATATCGATCTTTTG 57.741 33.333 0.00 0.00 29.21 2.44
4058 9350 8.739039 CCTAGTCTCTTTCATCATATCGATCTT 58.261 37.037 0.00 0.00 29.21 2.40
4059 9351 7.148086 GCCTAGTCTCTTTCATCATATCGATCT 60.148 40.741 0.00 0.00 29.21 2.75
4060 9352 6.972328 GCCTAGTCTCTTTCATCATATCGATC 59.028 42.308 0.00 0.00 29.21 3.69
4061 9353 6.435591 TGCCTAGTCTCTTTCATCATATCGAT 59.564 38.462 2.16 2.16 33.27 3.59
4062 9354 5.770162 TGCCTAGTCTCTTTCATCATATCGA 59.230 40.000 0.00 0.00 0.00 3.59
4063 9355 6.018589 TGCCTAGTCTCTTTCATCATATCG 57.981 41.667 0.00 0.00 0.00 2.92
4064 9356 5.868801 GCTGCCTAGTCTCTTTCATCATATC 59.131 44.000 0.00 0.00 0.00 1.63
4065 9357 5.306419 TGCTGCCTAGTCTCTTTCATCATAT 59.694 40.000 0.00 0.00 0.00 1.78
4066 9358 4.651045 TGCTGCCTAGTCTCTTTCATCATA 59.349 41.667 0.00 0.00 0.00 2.15
4067 9359 3.453717 TGCTGCCTAGTCTCTTTCATCAT 59.546 43.478 0.00 0.00 0.00 2.45
4068 9360 2.833943 TGCTGCCTAGTCTCTTTCATCA 59.166 45.455 0.00 0.00 0.00 3.07
4069 9361 3.194062 GTGCTGCCTAGTCTCTTTCATC 58.806 50.000 0.00 0.00 0.00 2.92
4070 9362 2.568956 TGTGCTGCCTAGTCTCTTTCAT 59.431 45.455 0.00 0.00 0.00 2.57
4071 9363 1.970640 TGTGCTGCCTAGTCTCTTTCA 59.029 47.619 0.00 0.00 0.00 2.69
4072 9364 2.751166 TGTGCTGCCTAGTCTCTTTC 57.249 50.000 0.00 0.00 0.00 2.62
4073 9365 3.710209 AATGTGCTGCCTAGTCTCTTT 57.290 42.857 0.00 0.00 0.00 2.52
4074 9366 5.508153 CGTATAATGTGCTGCCTAGTCTCTT 60.508 44.000 0.00 0.00 0.00 2.85
4075 9367 4.022762 CGTATAATGTGCTGCCTAGTCTCT 60.023 45.833 0.00 0.00 0.00 3.10
4076 9368 4.230657 CGTATAATGTGCTGCCTAGTCTC 58.769 47.826 0.00 0.00 0.00 3.36
4077 9369 3.637229 ACGTATAATGTGCTGCCTAGTCT 59.363 43.478 0.00 0.00 0.00 3.24
4078 9370 3.978687 ACGTATAATGTGCTGCCTAGTC 58.021 45.455 0.00 0.00 0.00 2.59
4079 9371 3.383505 TGACGTATAATGTGCTGCCTAGT 59.616 43.478 0.00 0.00 0.00 2.57
4080 9372 3.977427 TGACGTATAATGTGCTGCCTAG 58.023 45.455 0.00 0.00 0.00 3.02
4081 9373 4.116961 GTTGACGTATAATGTGCTGCCTA 58.883 43.478 0.00 0.00 0.00 3.93
4082 9374 2.936498 GTTGACGTATAATGTGCTGCCT 59.064 45.455 0.00 0.00 0.00 4.75
4083 9375 2.675844 TGTTGACGTATAATGTGCTGCC 59.324 45.455 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.