Multiple sequence alignment - TraesCS5A01G168400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G168400 chr5A 100.000 7845 0 0 1 7845 358492247 358484403 0.000000e+00 14488.0
1 TraesCS5A01G168400 chr5A 90.390 385 13 1 1628 2012 487696687 487696327 1.180000e-132 484.0
2 TraesCS5A01G168400 chr5A 96.800 125 4 0 5427 5551 358486765 358486641 7.980000e-50 209.0
3 TraesCS5A01G168400 chr5A 96.800 125 4 0 5483 5607 358486821 358486697 7.980000e-50 209.0
4 TraesCS5A01G168400 chr5A 98.182 110 1 1 4212 4320 358487935 358487826 2.890000e-44 191.0
5 TraesCS5A01G168400 chr5A 98.182 110 1 1 4313 4422 358488036 358487928 2.890000e-44 191.0
6 TraesCS5A01G168400 chr5A 83.784 185 22 7 7276 7455 440702276 440702095 1.350000e-37 169.0
7 TraesCS5A01G168400 chr5A 98.551 69 1 0 5427 5495 358486709 358486641 1.070000e-23 122.0
8 TraesCS5A01G168400 chr5A 98.551 69 1 0 5539 5607 358486821 358486753 1.070000e-23 122.0
9 TraesCS5A01G168400 chr5D 95.757 3582 69 23 70 3619 269742238 269738708 0.000000e+00 5696.0
10 TraesCS5A01G168400 chr5D 96.738 1717 47 7 5539 7255 269736860 269735153 0.000000e+00 2852.0
11 TraesCS5A01G168400 chr5D 93.243 814 16 7 4703 5495 269737587 269736792 0.000000e+00 1162.0
12 TraesCS5A01G168400 chr5D 94.359 390 20 2 3646 4035 269738708 269738321 1.460000e-166 597.0
13 TraesCS5A01G168400 chr5D 86.406 537 51 13 7323 7840 92173057 92172524 1.140000e-157 568.0
14 TraesCS5A01G168400 chr5D 91.884 345 27 1 7501 7845 269728257 269727914 1.530000e-131 481.0
15 TraesCS5A01G168400 chr5D 95.971 273 9 2 4313 4585 269738183 269737913 7.220000e-120 442.0
16 TraesCS5A01G168400 chr5D 98.690 229 3 0 4092 4320 269738303 269738075 2.640000e-109 407.0
17 TraesCS5A01G168400 chr5D 87.121 264 23 5 7246 7501 269730457 269730197 9.960000e-74 289.0
18 TraesCS5A01G168400 chr5D 97.101 69 2 0 5483 5551 269736860 269736792 4.970000e-22 117.0
19 TraesCS5A01G168400 chr5D 92.593 54 2 1 1600 1653 492611546 492611495 8.440000e-10 76.8
20 TraesCS5A01G168400 chr5D 88.889 63 4 2 1592 1652 535485336 535485397 3.040000e-09 75.0
21 TraesCS5A01G168400 chr5D 89.286 56 2 4 1599 1650 458874280 458874225 5.080000e-07 67.6
22 TraesCS5A01G168400 chr5D 87.273 55 1 1 1601 1649 535865391 535865445 3.060000e-04 58.4
23 TraesCS5A01G168400 chr5B 96.194 3389 83 14 346 3728 305597664 305594316 0.000000e+00 5502.0
24 TraesCS5A01G168400 chr5B 95.659 1912 69 7 5539 7447 305592704 305590804 0.000000e+00 3059.0
25 TraesCS5A01G168400 chr5B 92.918 819 18 5 4699 5495 305593436 305592636 0.000000e+00 1155.0
26 TraesCS5A01G168400 chr5B 94.207 397 20 3 4313 4709 305594088 305593695 3.130000e-168 603.0
27 TraesCS5A01G168400 chr5B 87.548 522 48 9 7323 7829 97515652 97515133 8.770000e-164 588.0
28 TraesCS5A01G168400 chr5B 94.425 287 15 1 70 356 305598101 305597816 2.600000e-119 440.0
29 TraesCS5A01G168400 chr5B 91.176 306 22 2 7540 7845 305590629 305590329 2.040000e-110 411.0
30 TraesCS5A01G168400 chr5B 98.253 229 4 0 4092 4320 305594208 305593980 1.230000e-107 401.0
31 TraesCS5A01G168400 chr5B 84.010 419 49 16 7276 7679 113436924 113437339 3.430000e-103 387.0
32 TraesCS5A01G168400 chr5B 89.103 156 11 2 5792 5941 98663179 98663334 1.040000e-43 189.0
33 TraesCS5A01G168400 chr5B 87.879 132 16 0 7441 7572 305590761 305590630 1.050000e-33 156.0
34 TraesCS5A01G168400 chr5B 92.857 98 6 1 3939 4035 305594323 305594226 2.950000e-29 141.0
35 TraesCS5A01G168400 chr5B 97.101 69 2 0 5483 5551 305592704 305592636 4.970000e-22 117.0
36 TraesCS5A01G168400 chr6A 83.012 571 79 13 7279 7834 539182256 539182823 1.180000e-137 501.0
37 TraesCS5A01G168400 chr6D 82.847 583 70 15 7277 7834 124845421 124845998 5.470000e-136 496.0
38 TraesCS5A01G168400 chr6D 86.275 357 46 2 7480 7834 124835831 124836186 1.230000e-102 385.0
39 TraesCS5A01G168400 chr3D 81.443 582 76 15 7279 7834 390078137 390078712 1.550000e-121 448.0
40 TraesCS5A01G168400 chr6B 83.373 421 52 12 7279 7683 36145813 36146231 2.670000e-99 374.0
41 TraesCS5A01G168400 chr3B 84.890 364 52 2 7460 7821 766802235 766801873 1.610000e-96 364.0
42 TraesCS5A01G168400 chr3B 83.333 180 22 7 7276 7451 115997338 115997513 8.150000e-35 159.0
43 TraesCS5A01G168400 chr3B 83.051 177 20 8 7279 7450 1781537 1781708 1.360000e-32 152.0
44 TraesCS5A01G168400 chr7B 91.083 157 9 2 5792 5943 155471168 155471324 2.870000e-49 207.0
45 TraesCS5A01G168400 chr7B 89.809 157 10 2 5788 5938 453623446 453623290 6.210000e-46 196.0
46 TraesCS5A01G168400 chr7B 82.065 184 25 7 7277 7455 468211339 468211519 4.900000e-32 150.0
47 TraesCS5A01G168400 chr1D 79.503 322 43 14 1870 2171 415460477 415460159 2.870000e-49 207.0
48 TraesCS5A01G168400 chr1A 79.385 325 42 15 1870 2171 513263816 513263494 1.030000e-48 206.0
49 TraesCS5A01G168400 chr7D 89.809 157 10 2 5788 5938 436961951 436961795 6.210000e-46 196.0
50 TraesCS5A01G168400 chr7A 89.809 157 10 3 5788 5938 486930096 486929940 6.210000e-46 196.0
51 TraesCS5A01G168400 chr7A 88.415 164 13 2 5786 5943 201986997 201987160 8.030000e-45 193.0
52 TraesCS5A01G168400 chr4B 89.677 155 11 2 5792 5941 658773215 658773061 8.030000e-45 193.0
53 TraesCS5A01G168400 chr2D 85.795 176 18 6 7279 7450 600565635 600565463 6.250000e-41 180.0
54 TraesCS5A01G168400 chr4A 90.909 55 2 2 1592 1644 140295332 140295385 3.930000e-08 71.3
55 TraesCS5A01G168400 chr1B 90.909 55 2 2 1592 1644 510788598 510788651 3.930000e-08 71.3
56 TraesCS5A01G168400 chrUn 100.000 31 0 0 1599 1629 69983147 69983177 3.060000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G168400 chr5A 358484403 358492247 7844 True 14488.000000 14488 100.000000 1 7845 1 chr5A.!!$R1 7844
1 TraesCS5A01G168400 chr5D 269735153 269742238 7085 True 1610.428571 5696 95.979857 70 7255 7 chr5D.!!$R5 7185
2 TraesCS5A01G168400 chr5D 92172524 92173057 533 True 568.000000 568 86.406000 7323 7840 1 chr5D.!!$R1 517
3 TraesCS5A01G168400 chr5D 269727914 269730457 2543 True 385.000000 481 89.502500 7246 7845 2 chr5D.!!$R4 599
4 TraesCS5A01G168400 chr5B 305590329 305598101 7772 True 1198.500000 5502 94.066900 70 7845 10 chr5B.!!$R2 7775
5 TraesCS5A01G168400 chr5B 97515133 97515652 519 True 588.000000 588 87.548000 7323 7829 1 chr5B.!!$R1 506
6 TraesCS5A01G168400 chr6A 539182256 539182823 567 False 501.000000 501 83.012000 7279 7834 1 chr6A.!!$F1 555
7 TraesCS5A01G168400 chr6D 124845421 124845998 577 False 496.000000 496 82.847000 7277 7834 1 chr6D.!!$F2 557
8 TraesCS5A01G168400 chr3D 390078137 390078712 575 False 448.000000 448 81.443000 7279 7834 1 chr3D.!!$F1 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 684 0.107993 AGTGATCATGTCCAGCACGG 60.108 55.000 0.00 0.0 34.82 4.94 F
534 698 0.457035 GCACGGCAATGAATCCACAT 59.543 50.000 0.00 0.0 0.00 3.21 F
927 1098 1.006688 ACATCTGTGTGTGCGCGTA 60.007 52.632 8.43 0.0 37.14 4.42 F
2162 2360 2.760374 CGGTCTCCTCATTAATCTGCC 58.240 52.381 0.00 0.0 0.00 4.85 F
3129 3327 3.192633 GTGTATTTTGATTTCCACGGGCT 59.807 43.478 0.00 0.0 0.00 5.19 F
3289 3487 0.165944 CAGCTGCCGGAAAAGTTACG 59.834 55.000 5.05 0.0 0.00 3.18 F
4396 4596 0.323302 TTGGTACGCTTCCAGCATGA 59.677 50.000 0.00 0.0 42.58 3.07 F
5451 5942 0.464870 ACACTGCTGCAATTTTGGCA 59.535 45.000 3.02 0.0 39.32 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2483 2681 5.087391 AGCATAGGCAGACTGATATCATG 57.913 43.478 6.65 3.09 44.61 3.07 R
2598 2796 2.224646 GGACAAGAAAGTTCCAGGAGCT 60.225 50.000 0.00 0.00 0.00 4.09 R
2654 2852 3.262420 ACAGCGTGTAATCAATGTCTCC 58.738 45.455 0.00 0.00 0.00 3.71 R
3201 3399 0.320374 CACCAGGTCCGCTCTGTTAA 59.680 55.000 0.00 0.00 0.00 2.01 R
4511 4711 0.475828 AAGACCTAGGGCAAGTGGGT 60.476 55.000 19.45 0.00 0.00 4.51 R
4685 4885 0.704076 TGCAATAGCCAAAGGGAGGT 59.296 50.000 0.00 0.00 41.13 3.85 R
5488 5979 0.317799 TGCCAAAATCGCAGCAATGT 59.682 45.000 0.00 0.00 30.97 2.71 R
7084 7575 0.104671 AAAGCACACCCAACACATGC 59.895 50.000 0.00 0.00 36.52 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.962433 CCAGGAAGTTCTAGAAATACACGA 58.038 41.667 6.78 0.00 0.00 4.35
24 25 6.574350 CCAGGAAGTTCTAGAAATACACGAT 58.426 40.000 6.78 0.00 0.00 3.73
25 26 7.042335 CCAGGAAGTTCTAGAAATACACGATT 58.958 38.462 6.78 0.00 0.00 3.34
26 27 7.549488 CCAGGAAGTTCTAGAAATACACGATTT 59.451 37.037 6.78 0.00 40.62 2.17
27 28 8.936864 CAGGAAGTTCTAGAAATACACGATTTT 58.063 33.333 6.78 0.00 37.90 1.82
28 29 9.503399 AGGAAGTTCTAGAAATACACGATTTTT 57.497 29.630 6.78 0.00 37.90 1.94
40 41 9.783256 AAATACACGATTTTTAAGTTATGCTCC 57.217 29.630 0.00 0.00 33.77 4.70
41 42 6.190954 ACACGATTTTTAAGTTATGCTCCC 57.809 37.500 0.00 0.00 0.00 4.30
42 43 5.124936 ACACGATTTTTAAGTTATGCTCCCC 59.875 40.000 0.00 0.00 0.00 4.81
43 44 4.643334 ACGATTTTTAAGTTATGCTCCCCC 59.357 41.667 0.00 0.00 0.00 5.40
62 63 2.273776 CCCCCACACACACACACA 59.726 61.111 0.00 0.00 0.00 3.72
63 64 2.118404 CCCCCACACACACACACAC 61.118 63.158 0.00 0.00 0.00 3.82
64 65 1.377856 CCCCACACACACACACACA 60.378 57.895 0.00 0.00 0.00 3.72
65 66 1.653094 CCCCACACACACACACACAC 61.653 60.000 0.00 0.00 0.00 3.82
66 67 0.957888 CCCACACACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
67 68 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
68 69 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
112 113 3.429543 TGTATGTTTGTTAGAACGGCGAC 59.570 43.478 16.62 7.38 32.18 5.19
126 127 1.650153 CGGCGACAATTTGAAAGCATG 59.350 47.619 0.00 0.00 0.00 4.06
127 128 2.676076 GGCGACAATTTGAAAGCATGT 58.324 42.857 2.79 0.00 0.00 3.21
164 165 7.611770 TGTACCGGATATTATGGAGATTTCTG 58.388 38.462 9.46 0.00 0.00 3.02
213 214 2.352503 GGCACAACCAACATAAGCTG 57.647 50.000 0.00 0.00 38.86 4.24
224 225 6.418101 ACCAACATAAGCTGTATGTTCTGAT 58.582 36.000 21.36 11.12 43.80 2.90
265 266 5.741962 TGATGGGAAAAGAATGATTGCAA 57.258 34.783 0.00 0.00 0.00 4.08
433 597 8.464770 GCATATGCTATTTGAAAGTCAACAAA 57.535 30.769 20.64 0.00 35.53 2.83
434 598 9.090692 GCATATGCTATTTGAAAGTCAACAAAT 57.909 29.630 20.64 0.00 44.93 2.32
442 606 8.715191 ATTTGAAAGTCAACAAATAACTTGCA 57.285 26.923 0.00 0.00 42.41 4.08
443 607 8.715191 TTTGAAAGTCAACAAATAACTTGCAT 57.285 26.923 0.00 0.00 38.15 3.96
444 608 7.928908 TGAAAGTCAACAAATAACTTGCATC 57.071 32.000 0.00 0.00 34.38 3.91
445 609 7.715657 TGAAAGTCAACAAATAACTTGCATCT 58.284 30.769 0.00 0.00 34.38 2.90
446 610 8.196771 TGAAAGTCAACAAATAACTTGCATCTT 58.803 29.630 0.00 0.00 34.38 2.40
447 611 8.947055 AAAGTCAACAAATAACTTGCATCTTT 57.053 26.923 0.00 0.00 38.75 2.52
448 612 8.579682 AAGTCAACAAATAACTTGCATCTTTC 57.420 30.769 0.00 0.00 38.75 2.62
520 684 0.107993 AGTGATCATGTCCAGCACGG 60.108 55.000 0.00 0.00 34.82 4.94
534 698 0.457035 GCACGGCAATGAATCCACAT 59.543 50.000 0.00 0.00 0.00 3.21
537 701 3.428725 GCACGGCAATGAATCCACATTTA 60.429 43.478 0.00 0.00 38.25 1.40
564 728 5.643348 TGATCGTGCAAGTTAAATCAGTCAT 59.357 36.000 0.00 0.00 0.00 3.06
760 931 6.947733 TGGAGTTGTATGGATGTCTTGAAATT 59.052 34.615 0.00 0.00 0.00 1.82
867 1038 2.289945 ACCACTCTGCCATTCTCACTTC 60.290 50.000 0.00 0.00 0.00 3.01
927 1098 1.006688 ACATCTGTGTGTGCGCGTA 60.007 52.632 8.43 0.00 37.14 4.42
1470 1641 6.370994 GCACTCCTTGACCTCATCATTATATG 59.629 42.308 0.00 0.00 37.11 1.78
1549 1720 4.475944 GCGTTTGCATTGTATTCTTCTGT 58.524 39.130 0.00 0.00 42.15 3.41
2162 2360 2.760374 CGGTCTCCTCATTAATCTGCC 58.240 52.381 0.00 0.00 0.00 4.85
2245 2443 9.187455 GTTACATGTAGCTTATCTCTAGCTTTC 57.813 37.037 12.05 0.00 46.42 2.62
2251 2449 5.738909 AGCTTATCTCTAGCTTTCTTGCAA 58.261 37.500 0.00 0.00 46.42 4.08
2654 2852 3.278367 TGGTAAACGAGTCGAGAGTTG 57.722 47.619 21.50 0.00 0.00 3.16
2908 3106 7.084486 CCCAGAACTGCTTATTTGTTTAACTC 58.916 38.462 0.00 0.00 0.00 3.01
3129 3327 3.192633 GTGTATTTTGATTTCCACGGGCT 59.807 43.478 0.00 0.00 0.00 5.19
3184 3382 8.634335 TTTAATCTGATTGGTTGATGACTTGA 57.366 30.769 13.01 0.00 0.00 3.02
3185 3383 8.812513 TTAATCTGATTGGTTGATGACTTGAT 57.187 30.769 13.01 0.00 0.00 2.57
3289 3487 0.165944 CAGCTGCCGGAAAAGTTACG 59.834 55.000 5.05 0.00 0.00 3.18
3372 3570 2.125106 GCCGGGGCAGTTACTGAG 60.125 66.667 17.40 3.80 41.49 3.35
3560 3759 7.820872 CCATAATTCTTGAATTGCCTTTCAGTT 59.179 33.333 16.22 0.00 36.97 3.16
3591 3790 9.762933 AAACATGTTTACAGACAAATTAATGCT 57.237 25.926 22.10 0.00 32.47 3.79
3690 3889 3.569194 TTTTACTCTTGTGACCTGCCA 57.431 42.857 0.00 0.00 0.00 4.92
3695 3894 2.840038 ACTCTTGTGACCTGCCATATGA 59.160 45.455 3.65 0.00 0.00 2.15
3735 3935 8.377681 CGTTTATACTGAAATTTTAGCGAGACA 58.622 33.333 9.73 0.00 0.00 3.41
3762 3962 5.801947 GCGCATAATCACTTCTTTGAATTGT 59.198 36.000 0.30 0.00 0.00 2.71
3770 3970 9.696917 AATCACTTCTTTGAATTGTTGTTATCC 57.303 29.630 0.00 0.00 0.00 2.59
3789 3989 2.573009 TCCTGGATTTCTCAGCATGTCA 59.427 45.455 0.00 0.00 37.40 3.58
3793 3993 3.198417 TGGATTTCTCAGCATGTCAGCTA 59.802 43.478 0.00 0.00 44.54 3.32
3837 4037 2.710377 TGTGTTCCATATGCACTGGTC 58.290 47.619 14.99 10.79 35.19 4.02
3886 4086 2.747446 GTGACGGTATTTTGCATCCAGT 59.253 45.455 0.00 0.00 0.00 4.00
3944 4144 6.845302 TGCTAGTTGCTACAAATCAAATCTG 58.155 36.000 0.13 0.00 43.37 2.90
4002 4202 4.905429 TGTTGCCAATAGTTTCTGCTCTA 58.095 39.130 0.00 0.00 0.00 2.43
4003 4203 5.312895 TGTTGCCAATAGTTTCTGCTCTAA 58.687 37.500 0.00 0.00 0.00 2.10
4035 4235 6.851222 ACTATCAACAATCCATCATCGTTC 57.149 37.500 0.00 0.00 0.00 3.95
4036 4236 6.586344 ACTATCAACAATCCATCATCGTTCT 58.414 36.000 0.00 0.00 0.00 3.01
4037 4237 7.050377 ACTATCAACAATCCATCATCGTTCTT 58.950 34.615 0.00 0.00 0.00 2.52
4038 4238 6.764308 ATCAACAATCCATCATCGTTCTTT 57.236 33.333 0.00 0.00 0.00 2.52
4039 4239 5.941733 TCAACAATCCATCATCGTTCTTTG 58.058 37.500 0.00 0.00 0.00 2.77
4044 4244 3.673902 TCCATCATCGTTCTTTGCTGAA 58.326 40.909 0.00 0.00 0.00 3.02
4045 4245 3.686241 TCCATCATCGTTCTTTGCTGAAG 59.314 43.478 0.00 0.00 36.67 3.02
4046 4246 3.181503 CCATCATCGTTCTTTGCTGAAGG 60.182 47.826 1.47 0.00 35.98 3.46
4048 4248 3.942829 TCATCGTTCTTTGCTGAAGGAT 58.057 40.909 13.10 13.10 46.13 3.24
4050 4250 3.401033 TCGTTCTTTGCTGAAGGATGA 57.599 42.857 0.98 0.98 36.69 2.92
4051 4251 3.738982 TCGTTCTTTGCTGAAGGATGAA 58.261 40.909 2.30 0.00 36.21 2.57
4052 4252 4.326826 TCGTTCTTTGCTGAAGGATGAAT 58.673 39.130 2.30 0.00 36.21 2.57
4053 4253 4.761739 TCGTTCTTTGCTGAAGGATGAATT 59.238 37.500 2.30 0.00 36.21 2.17
4054 4254 5.241506 TCGTTCTTTGCTGAAGGATGAATTT 59.758 36.000 2.30 0.00 36.21 1.82
4055 4255 5.570589 CGTTCTTTGCTGAAGGATGAATTTC 59.429 40.000 1.47 0.00 32.36 2.17
4056 4256 5.300969 TCTTTGCTGAAGGATGAATTTCG 57.699 39.130 1.47 0.00 35.98 3.46
4057 4257 4.761739 TCTTTGCTGAAGGATGAATTTCGT 59.238 37.500 0.00 0.00 35.98 3.85
4058 4258 5.937540 TCTTTGCTGAAGGATGAATTTCGTA 59.062 36.000 0.00 0.00 35.98 3.43
4059 4259 6.599244 TCTTTGCTGAAGGATGAATTTCGTAT 59.401 34.615 0.00 0.00 35.98 3.06
4060 4260 7.768582 TCTTTGCTGAAGGATGAATTTCGTATA 59.231 33.333 0.00 0.00 35.98 1.47
4061 4261 8.450578 TTTGCTGAAGGATGAATTTCGTATAT 57.549 30.769 0.00 0.00 0.00 0.86
4062 4262 7.658179 TGCTGAAGGATGAATTTCGTATATC 57.342 36.000 0.00 0.00 0.00 1.63
4063 4263 7.445121 TGCTGAAGGATGAATTTCGTATATCT 58.555 34.615 0.00 0.00 0.00 1.98
4064 4264 7.933577 TGCTGAAGGATGAATTTCGTATATCTT 59.066 33.333 0.00 0.00 0.00 2.40
4065 4265 8.778358 GCTGAAGGATGAATTTCGTATATCTTT 58.222 33.333 0.00 0.00 0.00 2.52
4067 4267 9.613428 TGAAGGATGAATTTCGTATATCTTTGT 57.387 29.630 0.00 0.00 0.00 2.83
4068 4268 9.869844 GAAGGATGAATTTCGTATATCTTTGTG 57.130 33.333 0.00 0.00 0.00 3.33
4069 4269 8.964476 AGGATGAATTTCGTATATCTTTGTGT 57.036 30.769 0.00 0.00 0.00 3.72
4070 4270 8.830580 AGGATGAATTTCGTATATCTTTGTGTG 58.169 33.333 0.00 0.00 0.00 3.82
4071 4271 8.826710 GGATGAATTTCGTATATCTTTGTGTGA 58.173 33.333 0.00 0.00 0.00 3.58
4180 4380 5.220739 GGATGAATTTCCTGATGTTCGACTG 60.221 44.000 0.00 0.00 32.68 3.51
4262 4462 7.466746 TTCTCTTGCAATTAATAGCTGGTTT 57.533 32.000 0.00 0.00 0.00 3.27
4317 4517 3.306472 TTCTTTGCTTTACCCCAGTGT 57.694 42.857 0.00 0.00 0.00 3.55
4318 4518 4.440826 TTCTTTGCTTTACCCCAGTGTA 57.559 40.909 0.00 0.00 0.00 2.90
4319 4519 4.440826 TCTTTGCTTTACCCCAGTGTAA 57.559 40.909 0.00 0.00 0.00 2.41
4320 4520 4.394729 TCTTTGCTTTACCCCAGTGTAAG 58.605 43.478 0.00 0.00 32.63 2.34
4321 4521 3.868619 TTGCTTTACCCCAGTGTAAGT 57.131 42.857 0.00 0.00 32.63 2.24
4322 4522 4.978438 TTGCTTTACCCCAGTGTAAGTA 57.022 40.909 0.00 0.00 32.63 2.24
4323 4523 4.276058 TGCTTTACCCCAGTGTAAGTAC 57.724 45.455 0.00 0.00 32.63 2.73
4324 4524 3.905591 TGCTTTACCCCAGTGTAAGTACT 59.094 43.478 0.00 0.00 32.63 2.73
4325 4525 5.085920 TGCTTTACCCCAGTGTAAGTACTA 58.914 41.667 0.00 0.00 32.63 1.82
4326 4526 5.722923 TGCTTTACCCCAGTGTAAGTACTAT 59.277 40.000 0.00 0.00 32.63 2.12
4327 4527 6.214005 TGCTTTACCCCAGTGTAAGTACTATT 59.786 38.462 0.00 0.00 32.63 1.73
4328 4528 7.108194 GCTTTACCCCAGTGTAAGTACTATTT 58.892 38.462 0.00 0.00 32.63 1.40
4329 4529 7.609146 GCTTTACCCCAGTGTAAGTACTATTTT 59.391 37.037 0.00 0.00 32.63 1.82
4330 4530 9.511272 CTTTACCCCAGTGTAAGTACTATTTTT 57.489 33.333 0.00 0.00 32.63 1.94
4331 4531 8.851541 TTACCCCAGTGTAAGTACTATTTTTG 57.148 34.615 0.00 0.00 0.00 2.44
4332 4532 6.844829 ACCCCAGTGTAAGTACTATTTTTGT 58.155 36.000 0.00 0.00 0.00 2.83
4333 4533 7.292319 ACCCCAGTGTAAGTACTATTTTTGTT 58.708 34.615 0.00 0.00 0.00 2.83
4334 4534 7.781219 ACCCCAGTGTAAGTACTATTTTTGTTT 59.219 33.333 0.00 0.00 0.00 2.83
4335 4535 8.294577 CCCCAGTGTAAGTACTATTTTTGTTTC 58.705 37.037 0.00 0.00 0.00 2.78
4336 4536 9.063615 CCCAGTGTAAGTACTATTTTTGTTTCT 57.936 33.333 0.00 0.00 0.00 2.52
4339 4539 9.946165 AGTGTAAGTACTATTTTTGTTTCTTGC 57.054 29.630 0.00 0.00 0.00 4.01
4340 4540 9.946165 GTGTAAGTACTATTTTTGTTTCTTGCT 57.054 29.630 0.00 0.00 0.00 3.91
4344 4544 9.952188 AAGTACTATTTTTGTTTCTTGCTTCTC 57.048 29.630 0.00 0.00 0.00 2.87
4345 4545 9.343539 AGTACTATTTTTGTTTCTTGCTTCTCT 57.656 29.630 0.00 0.00 0.00 3.10
4346 4546 9.952188 GTACTATTTTTGTTTCTTGCTTCTCTT 57.048 29.630 0.00 0.00 0.00 2.85
4347 4547 8.862550 ACTATTTTTGTTTCTTGCTTCTCTTG 57.137 30.769 0.00 0.00 0.00 3.02
4348 4548 6.594284 ATTTTTGTTTCTTGCTTCTCTTGC 57.406 33.333 0.00 0.00 0.00 4.01
4349 4549 4.717233 TTTGTTTCTTGCTTCTCTTGCA 57.283 36.364 0.00 0.00 38.80 4.08
4350 4550 4.717233 TTGTTTCTTGCTTCTCTTGCAA 57.283 36.364 0.00 0.00 46.48 4.08
4359 4559 6.764308 TTGCTTCTCTTGCAATTAATAGCT 57.236 33.333 0.00 0.00 44.24 3.32
4360 4560 6.127810 TGCTTCTCTTGCAATTAATAGCTG 57.872 37.500 0.00 0.00 37.51 4.24
4361 4561 5.066893 TGCTTCTCTTGCAATTAATAGCTGG 59.933 40.000 0.00 0.00 37.51 4.85
4362 4562 5.067023 GCTTCTCTTGCAATTAATAGCTGGT 59.933 40.000 0.00 0.00 0.00 4.00
4363 4563 6.405176 GCTTCTCTTGCAATTAATAGCTGGTT 60.405 38.462 0.00 0.00 0.00 3.67
4364 4564 7.466746 TTCTCTTGCAATTAATAGCTGGTTT 57.533 32.000 0.00 0.00 0.00 3.27
4365 4565 6.855836 TCTCTTGCAATTAATAGCTGGTTTG 58.144 36.000 0.00 0.00 0.00 2.93
4366 4566 6.434028 TCTCTTGCAATTAATAGCTGGTTTGT 59.566 34.615 0.00 0.00 0.00 2.83
4367 4567 6.991938 TCTTGCAATTAATAGCTGGTTTGTT 58.008 32.000 0.00 0.00 0.00 2.83
4368 4568 7.441017 TCTTGCAATTAATAGCTGGTTTGTTT 58.559 30.769 0.00 0.00 0.00 2.83
4369 4569 7.384660 TCTTGCAATTAATAGCTGGTTTGTTTG 59.615 33.333 0.00 0.00 0.00 2.93
4370 4570 6.520272 TGCAATTAATAGCTGGTTTGTTTGT 58.480 32.000 0.00 0.00 0.00 2.83
4371 4571 6.423302 TGCAATTAATAGCTGGTTTGTTTGTG 59.577 34.615 0.00 0.00 0.00 3.33
4372 4572 6.644592 GCAATTAATAGCTGGTTTGTTTGTGA 59.355 34.615 0.00 0.00 0.00 3.58
4373 4573 7.170658 GCAATTAATAGCTGGTTTGTTTGTGAA 59.829 33.333 0.00 0.00 0.00 3.18
4374 4574 9.206870 CAATTAATAGCTGGTTTGTTTGTGAAT 57.793 29.630 0.00 0.00 0.00 2.57
4375 4575 8.986477 ATTAATAGCTGGTTTGTTTGTGAATC 57.014 30.769 0.00 0.00 0.00 2.52
4376 4576 6.655078 AATAGCTGGTTTGTTTGTGAATCT 57.345 33.333 0.00 0.00 0.00 2.40
4377 4577 6.655078 ATAGCTGGTTTGTTTGTGAATCTT 57.345 33.333 0.00 0.00 0.00 2.40
4378 4578 5.343307 AGCTGGTTTGTTTGTGAATCTTT 57.657 34.783 0.00 0.00 0.00 2.52
4379 4579 5.111293 AGCTGGTTTGTTTGTGAATCTTTG 58.889 37.500 0.00 0.00 0.00 2.77
4380 4580 4.270808 GCTGGTTTGTTTGTGAATCTTTGG 59.729 41.667 0.00 0.00 0.00 3.28
4381 4581 5.413309 TGGTTTGTTTGTGAATCTTTGGT 57.587 34.783 0.00 0.00 0.00 3.67
4382 4582 6.531503 TGGTTTGTTTGTGAATCTTTGGTA 57.468 33.333 0.00 0.00 0.00 3.25
4383 4583 6.334202 TGGTTTGTTTGTGAATCTTTGGTAC 58.666 36.000 0.00 0.00 0.00 3.34
4384 4584 5.457473 GGTTTGTTTGTGAATCTTTGGTACG 59.543 40.000 0.00 0.00 0.00 3.67
4385 4585 4.217754 TGTTTGTGAATCTTTGGTACGC 57.782 40.909 0.00 0.00 0.00 4.42
4386 4586 3.880490 TGTTTGTGAATCTTTGGTACGCT 59.120 39.130 0.00 0.00 0.00 5.07
4387 4587 4.336993 TGTTTGTGAATCTTTGGTACGCTT 59.663 37.500 0.00 0.00 0.00 4.68
4388 4588 4.742438 TTGTGAATCTTTGGTACGCTTC 57.258 40.909 0.00 0.00 0.00 3.86
4389 4589 3.071479 TGTGAATCTTTGGTACGCTTCC 58.929 45.455 0.00 0.00 0.00 3.46
4390 4590 3.071479 GTGAATCTTTGGTACGCTTCCA 58.929 45.455 0.00 0.00 0.00 3.53
4391 4591 3.125316 GTGAATCTTTGGTACGCTTCCAG 59.875 47.826 0.00 0.00 36.28 3.86
4392 4592 1.739067 ATCTTTGGTACGCTTCCAGC 58.261 50.000 0.00 0.00 36.28 4.85
4393 4593 0.394938 TCTTTGGTACGCTTCCAGCA 59.605 50.000 0.00 0.00 42.58 4.41
4394 4594 1.003118 TCTTTGGTACGCTTCCAGCAT 59.997 47.619 0.00 0.00 42.58 3.79
4395 4595 1.131126 CTTTGGTACGCTTCCAGCATG 59.869 52.381 0.00 0.00 42.58 4.06
4396 4596 0.323302 TTGGTACGCTTCCAGCATGA 59.677 50.000 0.00 0.00 42.58 3.07
4397 4597 0.541392 TGGTACGCTTCCAGCATGAT 59.459 50.000 0.00 0.00 42.58 2.45
4398 4598 1.760029 TGGTACGCTTCCAGCATGATA 59.240 47.619 0.00 0.00 42.58 2.15
4399 4599 2.368548 TGGTACGCTTCCAGCATGATAT 59.631 45.455 0.00 0.00 42.58 1.63
4400 4600 3.181455 TGGTACGCTTCCAGCATGATATT 60.181 43.478 0.00 0.00 42.58 1.28
4401 4601 3.433615 GGTACGCTTCCAGCATGATATTC 59.566 47.826 0.00 0.00 42.58 1.75
4402 4602 3.482156 ACGCTTCCAGCATGATATTCT 57.518 42.857 0.00 0.00 42.58 2.40
4403 4603 3.813443 ACGCTTCCAGCATGATATTCTT 58.187 40.909 0.00 0.00 42.58 2.52
4404 4604 4.202441 ACGCTTCCAGCATGATATTCTTT 58.798 39.130 0.00 0.00 42.58 2.52
4405 4605 4.036027 ACGCTTCCAGCATGATATTCTTTG 59.964 41.667 0.00 0.00 42.58 2.77
4406 4606 4.296690 GCTTCCAGCATGATATTCTTTGC 58.703 43.478 0.00 0.00 41.89 3.68
4407 4607 4.037684 GCTTCCAGCATGATATTCTTTGCT 59.962 41.667 0.00 0.00 41.89 3.91
4408 4608 5.451520 GCTTCCAGCATGATATTCTTTGCTT 60.452 40.000 0.00 0.00 41.89 3.91
4409 4609 6.534475 TTCCAGCATGATATTCTTTGCTTT 57.466 33.333 0.00 0.00 39.69 3.51
4410 4610 7.643569 TTCCAGCATGATATTCTTTGCTTTA 57.356 32.000 0.00 0.00 39.69 1.85
4411 4611 7.031226 TCCAGCATGATATTCTTTGCTTTAC 57.969 36.000 0.00 0.00 39.69 2.01
4412 4612 6.039717 TCCAGCATGATATTCTTTGCTTTACC 59.960 38.462 0.00 0.00 39.69 2.85
4413 4613 6.211515 CAGCATGATATTCTTTGCTTTACCC 58.788 40.000 0.00 0.00 39.69 3.69
4414 4614 5.302823 AGCATGATATTCTTTGCTTTACCCC 59.697 40.000 0.00 0.00 0.00 4.95
4415 4615 5.068987 GCATGATATTCTTTGCTTTACCCCA 59.931 40.000 0.00 0.00 0.00 4.96
4416 4616 6.736794 GCATGATATTCTTTGCTTTACCCCAG 60.737 42.308 0.00 0.00 0.00 4.45
4417 4617 5.826643 TGATATTCTTTGCTTTACCCCAGT 58.173 37.500 0.00 0.00 0.00 4.00
4418 4618 5.652014 TGATATTCTTTGCTTTACCCCAGTG 59.348 40.000 0.00 0.00 0.00 3.66
4459 4659 5.209659 ACCACTTTGTTTACCCCAAATACA 58.790 37.500 0.00 0.00 31.85 2.29
4541 4741 3.809905 CCCTAGGTCTTTATCTGCAACC 58.190 50.000 8.29 0.00 0.00 3.77
4571 4771 2.356382 CGTAACACTTTGCACTTCCCAA 59.644 45.455 0.00 0.00 0.00 4.12
4607 4807 4.452114 GCGATAAATACATGTCATCTGGCA 59.548 41.667 0.00 0.00 0.00 4.92
4645 4845 2.098770 AGCGAAGGTCGTACTACCATTC 59.901 50.000 18.06 15.53 42.81 2.67
4650 4850 3.858247 AGGTCGTACTACCATTCAAAGC 58.142 45.455 18.06 0.00 42.40 3.51
4653 4853 4.189231 GTCGTACTACCATTCAAAGCCAT 58.811 43.478 0.00 0.00 0.00 4.40
4676 4876 3.905493 TTACACCAATTCCCCCTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
4678 4878 1.503347 ACACCAATTCCCCCTTTCACT 59.497 47.619 0.00 0.00 0.00 3.41
4818 5287 6.809689 TGTATTATGGTGAGTGTAACGTTCTG 59.190 38.462 2.82 0.00 45.86 3.02
4822 5291 3.004419 TGGTGAGTGTAACGTTCTGAGAG 59.996 47.826 2.82 0.00 45.86 3.20
4826 5295 2.225963 AGTGTAACGTTCTGAGAGGACG 59.774 50.000 2.82 5.24 45.86 4.79
4864 5333 2.451273 AGGAGTAGCAGCTATCCCCTTA 59.549 50.000 19.52 0.00 31.86 2.69
5032 5501 1.338136 ATAGGCACTGGAGGGTTCGG 61.338 60.000 0.00 0.00 41.52 4.30
5179 5648 2.865551 GCACATGTTTGGTTCAAGGTTG 59.134 45.455 0.00 0.00 0.00 3.77
5295 5764 2.824689 TTGACACATGGGCCATATGT 57.175 45.000 29.51 29.51 33.95 2.29
5300 5769 2.057137 ACATGGGCCATATGTGACAC 57.943 50.000 20.73 0.00 37.38 3.67
5301 5770 1.284491 ACATGGGCCATATGTGACACA 59.716 47.619 20.73 11.41 37.38 3.72
5302 5771 2.091720 ACATGGGCCATATGTGACACAT 60.092 45.455 23.83 23.83 42.35 3.21
5303 5772 2.055684 TGGGCCATATGTGACACATG 57.944 50.000 27.66 15.44 39.53 3.21
5304 5773 1.321474 GGGCCATATGTGACACATGG 58.679 55.000 27.66 23.48 39.53 3.66
5305 5774 1.321474 GGCCATATGTGACACATGGG 58.679 55.000 27.66 26.40 39.53 4.00
5306 5775 0.670162 GCCATATGTGACACATGGGC 59.330 55.000 32.46 32.46 45.89 5.36
5307 5776 1.321474 CCATATGTGACACATGGGCC 58.679 55.000 27.66 0.00 39.53 5.80
5308 5777 1.409942 CCATATGTGACACATGGGCCA 60.410 52.381 27.66 9.61 39.53 5.36
5309 5778 2.589720 CATATGTGACACATGGGCCAT 58.410 47.619 27.66 14.78 39.53 4.40
5310 5779 3.498301 CCATATGTGACACATGGGCCATA 60.498 47.826 27.66 9.12 39.53 2.74
5311 5780 4.338012 CATATGTGACACATGGGCCATAT 58.662 43.478 27.66 4.55 39.53 1.78
5312 5781 2.055684 TGTGACACATGGGCCATATG 57.944 50.000 22.89 22.89 0.00 1.78
5313 5782 1.284491 TGTGACACATGGGCCATATGT 59.716 47.619 29.51 29.51 33.95 2.29
5436 5927 9.646427 TTTTTGAAATAAACAAAGCAGTACACT 57.354 25.926 0.00 0.00 38.25 3.55
5437 5928 8.627487 TTTGAAATAAACAAAGCAGTACACTG 57.373 30.769 4.96 4.96 38.25 3.66
5449 5940 3.311106 CAGTACACTGCTGCAATTTTGG 58.689 45.455 3.02 0.00 37.15 3.28
5450 5941 2.061028 GTACACTGCTGCAATTTTGGC 58.939 47.619 3.02 0.00 0.00 4.52
5451 5942 0.464870 ACACTGCTGCAATTTTGGCA 59.535 45.000 3.02 0.00 39.32 4.92
5452 5943 1.071071 ACACTGCTGCAATTTTGGCAT 59.929 42.857 3.02 0.00 41.06 4.40
5453 5944 2.299582 ACACTGCTGCAATTTTGGCATA 59.700 40.909 3.02 0.00 41.06 3.14
5454 5945 3.055675 ACACTGCTGCAATTTTGGCATAT 60.056 39.130 3.02 0.00 41.06 1.78
5455 5946 3.308595 CACTGCTGCAATTTTGGCATATG 59.691 43.478 3.02 0.00 41.06 1.78
5456 5947 3.196039 ACTGCTGCAATTTTGGCATATGA 59.804 39.130 6.97 0.00 41.06 2.15
5457 5948 3.523547 TGCTGCAATTTTGGCATATGAC 58.476 40.909 6.97 3.57 41.06 3.06
5458 5949 2.867975 GCTGCAATTTTGGCATATGACC 59.132 45.455 5.99 7.63 41.06 4.02
5459 5950 3.431207 GCTGCAATTTTGGCATATGACCT 60.431 43.478 5.99 0.00 41.06 3.85
5460 5951 4.365723 CTGCAATTTTGGCATATGACCTC 58.634 43.478 5.99 0.00 41.06 3.85
5461 5952 3.768215 TGCAATTTTGGCATATGACCTCA 59.232 39.130 5.99 0.00 36.11 3.86
5462 5953 4.222366 TGCAATTTTGGCATATGACCTCAA 59.778 37.500 5.99 4.93 36.11 3.02
5463 5954 5.177326 GCAATTTTGGCATATGACCTCAAA 58.823 37.500 5.99 10.24 0.00 2.69
5464 5955 5.063817 GCAATTTTGGCATATGACCTCAAAC 59.936 40.000 5.99 0.00 0.00 2.93
5465 5956 5.999205 ATTTTGGCATATGACCTCAAACA 57.001 34.783 5.99 3.48 0.00 2.83
5466 5957 5.999205 TTTTGGCATATGACCTCAAACAT 57.001 34.783 5.99 0.00 0.00 2.71
5467 5958 5.999205 TTTGGCATATGACCTCAAACATT 57.001 34.783 5.99 0.00 0.00 2.71
5468 5959 5.999205 TTGGCATATGACCTCAAACATTT 57.001 34.783 5.99 0.00 0.00 2.32
5469 5960 5.999205 TGGCATATGACCTCAAACATTTT 57.001 34.783 5.99 0.00 0.00 1.82
5470 5961 5.722263 TGGCATATGACCTCAAACATTTTG 58.278 37.500 5.99 0.00 0.00 2.44
5471 5962 5.245751 TGGCATATGACCTCAAACATTTTGT 59.754 36.000 5.99 0.00 0.00 2.83
5472 5963 6.165577 GGCATATGACCTCAAACATTTTGTT 58.834 36.000 6.97 0.00 43.41 2.83
5473 5964 6.311200 GGCATATGACCTCAAACATTTTGTTC 59.689 38.462 6.97 0.00 40.14 3.18
5474 5965 6.311200 GCATATGACCTCAAACATTTTGTTCC 59.689 38.462 6.97 0.00 40.14 3.62
5475 5966 5.867903 ATGACCTCAAACATTTTGTTCCA 57.132 34.783 0.00 0.00 40.14 3.53
5476 5967 5.261209 TGACCTCAAACATTTTGTTCCAG 57.739 39.130 0.00 0.00 40.14 3.86
5477 5968 4.051237 GACCTCAAACATTTTGTTCCAGC 58.949 43.478 0.00 0.00 40.14 4.85
5478 5969 3.052036 CCTCAAACATTTTGTTCCAGCG 58.948 45.455 0.00 0.00 40.14 5.18
5479 5970 3.490761 CCTCAAACATTTTGTTCCAGCGT 60.491 43.478 0.00 0.00 40.14 5.07
5480 5971 4.261405 CCTCAAACATTTTGTTCCAGCGTA 60.261 41.667 0.00 0.00 40.14 4.42
5481 5972 5.446143 TCAAACATTTTGTTCCAGCGTAT 57.554 34.783 0.00 0.00 40.14 3.06
5482 5973 6.348950 CCTCAAACATTTTGTTCCAGCGTATA 60.349 38.462 0.00 0.00 40.14 1.47
5483 5974 6.607689 TCAAACATTTTGTTCCAGCGTATAG 58.392 36.000 0.00 0.00 40.14 1.31
5484 5975 4.981794 AACATTTTGTTCCAGCGTATAGC 58.018 39.130 0.00 0.00 40.78 2.97
5485 5976 4.457603 AACATTTTGTTCCAGCGTATAGCA 59.542 37.500 0.00 0.00 42.28 3.49
5486 5977 5.391950 AACATTTTGTTCCAGCGTATAGCAG 60.392 40.000 0.00 0.00 42.28 4.24
5487 5978 7.737621 AACATTTTGTTCCAGCGTATAGCAGT 61.738 38.462 0.00 0.00 42.28 4.40
5488 5979 8.486961 AACATTTTGTTCCAGCGTATAGCAGTA 61.487 37.037 0.00 0.00 42.28 2.74
5505 5996 3.173599 CAGTACATTGCTGCGATTTTGG 58.826 45.455 0.00 0.00 0.00 3.28
5506 5997 1.919918 GTACATTGCTGCGATTTTGGC 59.080 47.619 0.00 0.00 0.00 4.52
5507 5998 0.317799 ACATTGCTGCGATTTTGGCA 59.682 45.000 0.00 0.00 38.92 4.92
5508 5999 1.066716 ACATTGCTGCGATTTTGGCAT 60.067 42.857 0.00 0.00 40.09 4.40
5509 6000 2.166050 ACATTGCTGCGATTTTGGCATA 59.834 40.909 0.00 0.00 40.09 3.14
5510 6001 3.181473 ACATTGCTGCGATTTTGGCATAT 60.181 39.130 0.00 0.00 40.09 1.78
5511 6002 2.495409 TGCTGCGATTTTGGCATATG 57.505 45.000 0.00 0.00 40.09 1.78
5512 6003 2.022934 TGCTGCGATTTTGGCATATGA 58.977 42.857 6.97 0.00 40.09 2.15
5513 6004 2.223548 TGCTGCGATTTTGGCATATGAC 60.224 45.455 6.97 3.57 40.09 3.06
5514 6005 2.859806 GCTGCGATTTTGGCATATGACC 60.860 50.000 5.99 7.63 40.09 4.02
5515 6006 2.620115 CTGCGATTTTGGCATATGACCT 59.380 45.455 5.99 0.00 40.09 3.85
5516 6007 2.618241 TGCGATTTTGGCATATGACCTC 59.382 45.455 5.99 0.00 35.04 3.85
5517 6008 2.618241 GCGATTTTGGCATATGACCTCA 59.382 45.455 5.99 0.00 0.00 3.86
5518 6009 3.066621 GCGATTTTGGCATATGACCTCAA 59.933 43.478 5.99 4.93 0.00 3.02
5519 6010 4.439974 GCGATTTTGGCATATGACCTCAAA 60.440 41.667 5.99 10.24 0.00 2.69
5520 6011 5.036737 CGATTTTGGCATATGACCTCAAAC 58.963 41.667 5.99 3.12 0.00 2.93
5521 6012 5.392919 CGATTTTGGCATATGACCTCAAACA 60.393 40.000 5.99 3.48 0.00 2.83
5522 6013 5.999205 TTTTGGCATATGACCTCAAACAT 57.001 34.783 5.99 0.00 0.00 2.71
5523 6014 5.999205 TTTGGCATATGACCTCAAACATT 57.001 34.783 5.99 0.00 0.00 2.71
5524 6015 5.999205 TTGGCATATGACCTCAAACATTT 57.001 34.783 5.99 0.00 0.00 2.32
5525 6016 5.999205 TGGCATATGACCTCAAACATTTT 57.001 34.783 5.99 0.00 0.00 1.82
5526 6017 5.722263 TGGCATATGACCTCAAACATTTTG 58.278 37.500 5.99 0.00 0.00 2.44
5527 6018 5.245751 TGGCATATGACCTCAAACATTTTGT 59.754 36.000 5.99 0.00 0.00 2.83
5528 6019 6.165577 GGCATATGACCTCAAACATTTTGTT 58.834 36.000 6.97 0.00 43.41 2.83
5529 6020 6.311200 GGCATATGACCTCAAACATTTTGTTC 59.689 38.462 6.97 0.00 40.14 3.18
5530 6021 6.311200 GCATATGACCTCAAACATTTTGTTCC 59.689 38.462 6.97 0.00 40.14 3.62
5531 6022 5.867903 ATGACCTCAAACATTTTGTTCCA 57.132 34.783 0.00 0.00 40.14 3.53
5532 6023 5.261209 TGACCTCAAACATTTTGTTCCAG 57.739 39.130 0.00 0.00 40.14 3.86
5533 6024 4.051237 GACCTCAAACATTTTGTTCCAGC 58.949 43.478 0.00 0.00 40.14 4.85
5534 6025 3.052036 CCTCAAACATTTTGTTCCAGCG 58.948 45.455 0.00 0.00 40.14 5.18
5535 6026 3.490761 CCTCAAACATTTTGTTCCAGCGT 60.491 43.478 0.00 0.00 40.14 5.07
5536 6027 4.261405 CCTCAAACATTTTGTTCCAGCGTA 60.261 41.667 0.00 0.00 40.14 4.42
5537 6028 5.446143 TCAAACATTTTGTTCCAGCGTAT 57.554 34.783 0.00 0.00 40.14 3.06
5538 6029 6.348950 CCTCAAACATTTTGTTCCAGCGTATA 60.349 38.462 0.00 0.00 40.14 1.47
5539 6030 6.607689 TCAAACATTTTGTTCCAGCGTATAG 58.392 36.000 0.00 0.00 40.14 1.31
5540 6031 4.981794 AACATTTTGTTCCAGCGTATAGC 58.018 39.130 0.00 0.00 40.78 2.97
5701 6192 5.820947 ACTCGGTGTTCAGTTTTAGTGAAAT 59.179 36.000 0.00 0.00 39.07 2.17
5761 6252 5.637006 AGTCATAAACAAAATGCGGCTTA 57.363 34.783 0.00 0.00 0.00 3.09
5763 6254 5.048364 AGTCATAAACAAAATGCGGCTTACA 60.048 36.000 0.00 0.00 0.00 2.41
6073 6564 2.203788 TTCGGTCCAGAGTGGGCT 60.204 61.111 0.00 0.00 43.05 5.19
6082 6573 1.089920 CAGAGTGGGCTATGCAACAC 58.910 55.000 0.00 8.01 37.92 3.32
6104 6595 9.533831 AACACATAATTCCTCAGGTTCTTTATT 57.466 29.630 0.00 0.00 0.00 1.40
6147 6638 7.029563 GCATACTTTAAACATGCACTAAAGCT 58.970 34.615 18.63 9.69 43.59 3.74
6527 7018 9.461312 AACTAACATAATTGGCAGAACTCAATA 57.539 29.630 0.00 0.00 33.72 1.90
6555 7046 3.750130 AGTGCTTTGCTGACATACTTCTG 59.250 43.478 0.00 0.00 0.00 3.02
6727 7218 7.944729 ATCATGAATACTAACTTTGCAGGTT 57.055 32.000 0.00 10.99 0.00 3.50
6864 7355 1.467734 ACTAAGCTACTGTCGTCACGG 59.532 52.381 0.00 0.00 34.67 4.94
6931 7422 8.896722 ATTTACCCTTAAGAGTCTGAGAGTTA 57.103 34.615 3.36 0.00 0.00 2.24
6948 7439 7.727181 TGAGAGTTATTTCTAGCCCAGTAATC 58.273 38.462 0.00 0.00 0.00 1.75
7084 7575 9.903682 ATAGTTTGAACTTGATTTCTGTCATTG 57.096 29.630 1.20 0.00 40.37 2.82
7100 7591 0.033781 ATTGCATGTGTTGGGTGTGC 59.966 50.000 0.00 0.00 36.39 4.57
7140 7631 3.804786 TGTCCGTTGTTTCTGACTGTA 57.195 42.857 0.00 0.00 0.00 2.74
7184 7676 4.907269 TGCTATTATCTTGGAGGTGGATGA 59.093 41.667 0.00 0.00 0.00 2.92
7198 7690 3.243975 GGTGGATGAAATGCCCATGAATC 60.244 47.826 0.00 0.00 31.31 2.52
7199 7691 3.385433 GTGGATGAAATGCCCATGAATCA 59.615 43.478 0.00 0.00 31.31 2.57
7200 7692 4.031611 TGGATGAAATGCCCATGAATCAA 58.968 39.130 0.00 0.00 31.31 2.57
7201 7693 4.141892 TGGATGAAATGCCCATGAATCAAC 60.142 41.667 0.00 0.00 31.31 3.18
7203 7695 4.459390 TGAAATGCCCATGAATCAACTG 57.541 40.909 0.00 0.00 0.00 3.16
7204 7696 3.196039 TGAAATGCCCATGAATCAACTGG 59.804 43.478 0.00 0.00 0.00 4.00
7233 7725 8.780249 ACGTGCAAGTACTATTTAATTCAACTT 58.220 29.630 2.53 0.00 0.00 2.66
7378 7876 1.167851 TGCATCTTCAAAGAAGGGCG 58.832 50.000 6.89 0.00 38.77 6.13
7379 7877 0.453390 GCATCTTCAAAGAAGGGCGG 59.547 55.000 6.89 0.00 38.77 6.13
7405 7903 5.437289 TCAACAGAAGATGCAAAACGAAT 57.563 34.783 0.00 0.00 0.00 3.34
7456 8006 2.494870 ACTAGAGATGTAAAACCGGCGT 59.505 45.455 6.01 0.00 0.00 5.68
7469 8019 1.663388 CGGCGTGTGACTGCTGTTA 60.663 57.895 0.00 0.00 32.78 2.41
7549 10085 9.891828 GTGCATCATCGACCATAATTTTAAATA 57.108 29.630 0.00 0.00 0.00 1.40
7581 10117 8.455682 AGTAAAAGTCAATTGTCTCAAACGAAA 58.544 29.630 5.13 0.00 0.00 3.46
7589 10125 3.701241 TGTCTCAAACGAAATTGTTGGC 58.299 40.909 0.00 0.00 31.10 4.52
7610 10146 3.303924 GCCCAACAAATGAAAATGCACAC 60.304 43.478 0.00 0.00 0.00 3.82
7615 10153 6.458478 CCAACAAATGAAAATGCACACACATT 60.458 34.615 0.00 0.00 42.01 2.71
7736 10278 3.545124 TTGCCGCGAACTCCACCAT 62.545 57.895 8.23 0.00 0.00 3.55
7757 10299 5.452776 CCATAAGCACATTCATTGCCATCTT 60.453 40.000 0.00 0.00 41.18 2.40
7815 10357 1.028330 CCACTCATCATGTTGCCGCT 61.028 55.000 0.00 0.00 0.00 5.52
7826 10368 3.790416 TTGCCGCTGAAGCCACCTT 62.790 57.895 0.00 0.00 37.91 3.50
7829 10371 3.121030 CGCTGAAGCCACCTTCCG 61.121 66.667 0.00 0.00 45.53 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.962433 TCGTGTATTTCTAGAACTTCCTGG 58.038 41.667 4.18 0.00 0.00 4.45
1 2 8.480643 AAATCGTGTATTTCTAGAACTTCCTG 57.519 34.615 4.18 0.00 32.00 3.86
2 3 9.503399 AAAAATCGTGTATTTCTAGAACTTCCT 57.497 29.630 4.18 0.00 36.76 3.36
14 15 9.783256 GGAGCATAACTTAAAAATCGTGTATTT 57.217 29.630 0.00 0.00 39.56 1.40
15 16 8.403236 GGGAGCATAACTTAAAAATCGTGTATT 58.597 33.333 0.00 0.00 0.00 1.89
16 17 7.012989 GGGGAGCATAACTTAAAAATCGTGTAT 59.987 37.037 0.00 0.00 0.00 2.29
17 18 6.316890 GGGGAGCATAACTTAAAAATCGTGTA 59.683 38.462 0.00 0.00 0.00 2.90
18 19 5.124936 GGGGAGCATAACTTAAAAATCGTGT 59.875 40.000 0.00 0.00 0.00 4.49
19 20 5.449999 GGGGGAGCATAACTTAAAAATCGTG 60.450 44.000 0.00 0.00 0.00 4.35
20 21 4.643334 GGGGGAGCATAACTTAAAAATCGT 59.357 41.667 0.00 0.00 0.00 3.73
21 22 5.183014 GGGGGAGCATAACTTAAAAATCG 57.817 43.478 0.00 0.00 0.00 3.34
45 46 2.118404 GTGTGTGTGTGTGTGGGGG 61.118 63.158 0.00 0.00 0.00 5.40
46 47 1.377856 TGTGTGTGTGTGTGTGGGG 60.378 57.895 0.00 0.00 0.00 4.96
47 48 0.957888 TGTGTGTGTGTGTGTGTGGG 60.958 55.000 0.00 0.00 0.00 4.61
48 49 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
49 50 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
50 51 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
51 52 2.287248 TGTTTGTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
52 53 1.950216 TGTTTGTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
53 54 2.695613 TGTTTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
54 55 2.670789 GCATGTTTGTGTGTGTGTGTGT 60.671 45.455 0.00 0.00 0.00 3.72
55 56 1.919263 GCATGTTTGTGTGTGTGTGTG 59.081 47.619 0.00 0.00 0.00 3.82
56 57 1.818060 AGCATGTTTGTGTGTGTGTGT 59.182 42.857 0.00 0.00 0.00 3.72
57 58 2.186891 CAGCATGTTTGTGTGTGTGTG 58.813 47.619 0.00 0.00 0.00 3.82
58 59 2.565210 CAGCATGTTTGTGTGTGTGT 57.435 45.000 0.00 0.00 0.00 3.72
164 165 5.178809 ACCAAAGCAAGTCGTATGAAACTAC 59.821 40.000 0.00 0.00 0.00 2.73
213 214 6.341316 TCTACAAGCAAGGATCAGAACATAC 58.659 40.000 0.00 0.00 0.00 2.39
224 225 4.890158 TCAACAGATCTACAAGCAAGGA 57.110 40.909 0.00 0.00 0.00 3.36
265 266 0.971386 CTTTGCAGCATTCCCAAGGT 59.029 50.000 0.00 0.00 0.00 3.50
382 545 1.277557 ACAACCCAAACAGCAAAAGCA 59.722 42.857 0.00 0.00 0.00 3.91
383 546 1.665169 CACAACCCAAACAGCAAAAGC 59.335 47.619 0.00 0.00 0.00 3.51
384 547 2.971307 ACACAACCCAAACAGCAAAAG 58.029 42.857 0.00 0.00 0.00 2.27
418 582 8.715191 ATGCAAGTTATTTGTTGACTTTCAAA 57.285 26.923 0.00 0.00 38.22 2.69
426 590 9.033481 CAAAGAAAGATGCAAGTTATTTGTTGA 57.967 29.630 14.46 0.00 39.08 3.18
427 591 9.033481 TCAAAGAAAGATGCAAGTTATTTGTTG 57.967 29.630 18.75 8.70 39.08 3.33
428 592 9.034544 GTCAAAGAAAGATGCAAGTTATTTGTT 57.965 29.630 18.75 5.38 39.08 2.83
429 593 7.653311 GGTCAAAGAAAGATGCAAGTTATTTGT 59.347 33.333 18.75 0.33 39.08 2.83
430 594 7.869429 AGGTCAAAGAAAGATGCAAGTTATTTG 59.131 33.333 15.70 15.70 39.88 2.32
431 595 7.955918 AGGTCAAAGAAAGATGCAAGTTATTT 58.044 30.769 0.00 0.00 0.00 1.40
432 596 7.449704 AGAGGTCAAAGAAAGATGCAAGTTATT 59.550 33.333 0.00 0.00 0.00 1.40
433 597 6.944862 AGAGGTCAAAGAAAGATGCAAGTTAT 59.055 34.615 0.00 0.00 0.00 1.89
434 598 6.299141 AGAGGTCAAAGAAAGATGCAAGTTA 58.701 36.000 0.00 0.00 0.00 2.24
435 599 5.136105 AGAGGTCAAAGAAAGATGCAAGTT 58.864 37.500 0.00 0.00 0.00 2.66
436 600 4.723309 AGAGGTCAAAGAAAGATGCAAGT 58.277 39.130 0.00 0.00 0.00 3.16
437 601 5.702349 AAGAGGTCAAAGAAAGATGCAAG 57.298 39.130 0.00 0.00 0.00 4.01
438 602 7.581213 TTTAAGAGGTCAAAGAAAGATGCAA 57.419 32.000 0.00 0.00 0.00 4.08
439 603 7.765695 ATTTAAGAGGTCAAAGAAAGATGCA 57.234 32.000 0.00 0.00 0.00 3.96
440 604 8.919661 CAAATTTAAGAGGTCAAAGAAAGATGC 58.080 33.333 0.00 0.00 0.00 3.91
441 605 9.971922 ACAAATTTAAGAGGTCAAAGAAAGATG 57.028 29.630 0.00 0.00 0.00 2.90
443 607 9.801873 CAACAAATTTAAGAGGTCAAAGAAAGA 57.198 29.630 0.00 0.00 0.00 2.52
444 608 9.586435 ACAACAAATTTAAGAGGTCAAAGAAAG 57.414 29.630 0.00 0.00 0.00 2.62
445 609 9.364989 CACAACAAATTTAAGAGGTCAAAGAAA 57.635 29.630 0.00 0.00 0.00 2.52
446 610 7.491048 GCACAACAAATTTAAGAGGTCAAAGAA 59.509 33.333 0.00 0.00 0.00 2.52
447 611 6.978080 GCACAACAAATTTAAGAGGTCAAAGA 59.022 34.615 0.00 0.00 0.00 2.52
448 612 6.980397 AGCACAACAAATTTAAGAGGTCAAAG 59.020 34.615 0.00 0.00 0.00 2.77
520 684 6.415867 CGATCAGTTAAATGTGGATTCATTGC 59.584 38.462 2.43 0.00 37.96 3.56
534 698 7.866729 TGATTTAACTTGCACGATCAGTTAAA 58.133 30.769 24.75 24.75 43.98 1.52
537 701 5.470098 ACTGATTTAACTTGCACGATCAGTT 59.530 36.000 15.38 11.28 46.79 3.16
557 721 2.613595 GCACACTGAAACACATGACTGA 59.386 45.455 0.00 0.00 0.00 3.41
768 939 9.226606 TCAACCTATTACAACCATAGTTTCAAG 57.773 33.333 0.00 0.00 32.45 3.02
810 981 5.492524 AGATCAACCAAATCTCCTCCCTTAA 59.507 40.000 0.00 0.00 0.00 1.85
811 982 5.039645 AGATCAACCAAATCTCCTCCCTTA 58.960 41.667 0.00 0.00 0.00 2.69
867 1038 2.097036 TGCATGATCAAAGGCAAGAGG 58.903 47.619 15.15 0.00 32.54 3.69
922 1093 1.467734 ACCACTAGAACTGAGTACGCG 59.532 52.381 3.53 3.53 0.00 6.01
1299 1470 1.134521 ACTGCTTTGTCTCGGACACAA 60.135 47.619 6.27 0.00 42.60 3.33
1410 1581 7.274603 TGACAACAATCAATTGAATGTCTCA 57.725 32.000 25.41 23.35 46.07 3.27
1470 1641 9.778993 CATGCAAACATATATATTACAGAAGGC 57.221 33.333 0.00 0.00 33.67 4.35
1579 1750 6.476378 ACAGAGTACAGCAGTATTTCCAATT 58.524 36.000 0.00 0.00 31.84 2.32
1644 1842 9.482627 GCATTGCTACATTTATCTAAGTACTCT 57.517 33.333 0.16 0.00 0.00 3.24
2162 2360 7.751732 TGACAAATCAATAAAAGATCTCCACG 58.248 34.615 0.00 0.00 0.00 4.94
2483 2681 5.087391 AGCATAGGCAGACTGATATCATG 57.913 43.478 6.65 3.09 44.61 3.07
2598 2796 2.224646 GGACAAGAAAGTTCCAGGAGCT 60.225 50.000 0.00 0.00 0.00 4.09
2654 2852 3.262420 ACAGCGTGTAATCAATGTCTCC 58.738 45.455 0.00 0.00 0.00 3.71
2908 3106 7.149569 ACCATGATGATGAACTTAACAACAG 57.850 36.000 0.00 0.00 0.00 3.16
3041 3239 2.416972 GGTCACTAACCTTGTAGGCTCG 60.417 54.545 0.00 0.00 45.45 5.03
3185 3383 8.387354 CGCTCTGTTAACAAATATATGAACACA 58.613 33.333 10.03 0.00 0.00 3.72
3201 3399 0.320374 CACCAGGTCCGCTCTGTTAA 59.680 55.000 0.00 0.00 0.00 2.01
3289 3487 8.475639 TGTGGACTTAATATCCTACAGAACTTC 58.524 37.037 7.29 0.00 37.13 3.01
3372 3570 5.888105 ACAGCAGCAGAATACAAATGATTC 58.112 37.500 0.00 0.00 34.15 2.52
3560 3759 7.840342 ATTTGTCTGTAAACATGTTTGCAAA 57.160 28.000 32.43 27.64 42.81 3.68
3672 3871 4.469586 TCATATGGCAGGTCACAAGAGTAA 59.530 41.667 2.13 0.00 0.00 2.24
3695 3894 7.483307 TCAGTATAAACGGCGAATACTACTTT 58.517 34.615 23.21 11.65 35.26 2.66
3735 3935 3.947196 TCAAAGAAGTGATTATGCGCCAT 59.053 39.130 4.18 0.63 0.00 4.40
3762 3962 5.178096 TGCTGAGAAATCCAGGATAACAA 57.822 39.130 1.02 0.00 32.51 2.83
3770 3970 2.355132 GCTGACATGCTGAGAAATCCAG 59.645 50.000 0.00 0.00 34.88 3.86
3789 3989 5.972107 AAAACATCTGCATTGTTCTAGCT 57.028 34.783 13.66 0.00 36.32 3.32
3793 3993 5.280654 ACCAAAAACATCTGCATTGTTCT 57.719 34.783 13.66 0.11 36.32 3.01
3837 4037 5.342433 CATGTACATGTAACTGGCAAATGG 58.658 41.667 24.91 0.00 34.23 3.16
3863 4063 2.746904 TGGATGCAAAATACCGTCACAG 59.253 45.455 0.00 0.00 0.00 3.66
4002 4202 9.754382 GATGGATTGTTGATAGTAATTGCATTT 57.246 29.630 0.00 0.00 0.00 2.32
4003 4203 8.916062 TGATGGATTGTTGATAGTAATTGCATT 58.084 29.630 0.00 0.00 0.00 3.56
4024 4224 3.181503 CCTTCAGCAAAGAACGATGATGG 60.182 47.826 0.00 0.00 37.63 3.51
4035 4235 5.051891 ACGAAATTCATCCTTCAGCAAAG 57.948 39.130 0.00 0.00 34.52 2.77
4036 4236 6.757897 ATACGAAATTCATCCTTCAGCAAA 57.242 33.333 0.00 0.00 0.00 3.68
4037 4237 7.933577 AGATATACGAAATTCATCCTTCAGCAA 59.066 33.333 0.00 0.00 0.00 3.91
4038 4238 7.445121 AGATATACGAAATTCATCCTTCAGCA 58.555 34.615 0.00 0.00 0.00 4.41
4039 4239 7.897575 AGATATACGAAATTCATCCTTCAGC 57.102 36.000 0.00 0.00 0.00 4.26
4044 4244 8.830580 CACACAAAGATATACGAAATTCATCCT 58.169 33.333 0.00 0.00 0.00 3.24
4045 4245 8.826710 TCACACAAAGATATACGAAATTCATCC 58.173 33.333 0.00 0.00 0.00 3.51
4080 4280 9.716507 GCAGAAAGCAAAAGATATACGAAATTA 57.283 29.630 0.00 0.00 44.79 1.40
4081 4281 8.620533 GCAGAAAGCAAAAGATATACGAAATT 57.379 30.769 0.00 0.00 44.79 1.82
4180 4380 6.127810 TGATCAAGCTTGCTGATTATGTTC 57.872 37.500 21.99 1.29 33.63 3.18
4262 4462 3.880490 AGCGTACCAAAGATTCACAAACA 59.120 39.130 0.00 0.00 0.00 2.83
4318 4518 9.952188 GAGAAGCAAGAAACAAAAATAGTACTT 57.048 29.630 0.00 0.00 0.00 2.24
4319 4519 9.343539 AGAGAAGCAAGAAACAAAAATAGTACT 57.656 29.630 0.00 0.00 0.00 2.73
4320 4520 9.952188 AAGAGAAGCAAGAAACAAAAATAGTAC 57.048 29.630 0.00 0.00 0.00 2.73
4321 4521 9.950680 CAAGAGAAGCAAGAAACAAAAATAGTA 57.049 29.630 0.00 0.00 0.00 1.82
4322 4522 7.436376 GCAAGAGAAGCAAGAAACAAAAATAGT 59.564 33.333 0.00 0.00 0.00 2.12
4323 4523 7.436080 TGCAAGAGAAGCAAGAAACAAAAATAG 59.564 33.333 0.00 0.00 39.39 1.73
4324 4524 7.264221 TGCAAGAGAAGCAAGAAACAAAAATA 58.736 30.769 0.00 0.00 39.39 1.40
4325 4525 6.108015 TGCAAGAGAAGCAAGAAACAAAAAT 58.892 32.000 0.00 0.00 39.39 1.82
4326 4526 5.477510 TGCAAGAGAAGCAAGAAACAAAAA 58.522 33.333 0.00 0.00 39.39 1.94
4327 4527 5.070770 TGCAAGAGAAGCAAGAAACAAAA 57.929 34.783 0.00 0.00 39.39 2.44
4328 4528 4.717233 TGCAAGAGAAGCAAGAAACAAA 57.283 36.364 0.00 0.00 39.39 2.83
4329 4529 4.717233 TTGCAAGAGAAGCAAGAAACAA 57.283 36.364 0.00 0.00 46.13 2.83
4337 4537 5.066893 CCAGCTATTAATTGCAAGAGAAGCA 59.933 40.000 21.26 0.00 40.85 3.91
4338 4538 5.067023 ACCAGCTATTAATTGCAAGAGAAGC 59.933 40.000 21.26 10.04 0.00 3.86
4339 4539 6.690194 ACCAGCTATTAATTGCAAGAGAAG 57.310 37.500 21.26 0.00 0.00 2.85
4340 4540 7.039784 ACAAACCAGCTATTAATTGCAAGAGAA 60.040 33.333 21.26 0.00 0.00 2.87
4341 4541 6.434028 ACAAACCAGCTATTAATTGCAAGAGA 59.566 34.615 21.26 0.00 0.00 3.10
4342 4542 6.624423 ACAAACCAGCTATTAATTGCAAGAG 58.376 36.000 21.26 10.49 0.00 2.85
4343 4543 6.588719 ACAAACCAGCTATTAATTGCAAGA 57.411 33.333 21.26 0.00 0.00 3.02
4344 4544 7.171337 ACAAACAAACCAGCTATTAATTGCAAG 59.829 33.333 21.26 14.62 0.00 4.01
4345 4545 6.989169 ACAAACAAACCAGCTATTAATTGCAA 59.011 30.769 21.26 0.00 0.00 4.08
4346 4546 6.423302 CACAAACAAACCAGCTATTAATTGCA 59.577 34.615 21.26 0.00 0.00 4.08
4347 4547 6.644592 TCACAAACAAACCAGCTATTAATTGC 59.355 34.615 13.17 13.17 0.00 3.56
4348 4548 8.586570 TTCACAAACAAACCAGCTATTAATTG 57.413 30.769 0.00 0.00 0.00 2.32
4349 4549 9.423061 GATTCACAAACAAACCAGCTATTAATT 57.577 29.630 0.00 0.00 0.00 1.40
4350 4550 8.806146 AGATTCACAAACAAACCAGCTATTAAT 58.194 29.630 0.00 0.00 0.00 1.40
4351 4551 8.177119 AGATTCACAAACAAACCAGCTATTAA 57.823 30.769 0.00 0.00 0.00 1.40
4352 4552 7.759489 AGATTCACAAACAAACCAGCTATTA 57.241 32.000 0.00 0.00 0.00 0.98
4353 4553 6.655078 AGATTCACAAACAAACCAGCTATT 57.345 33.333 0.00 0.00 0.00 1.73
4354 4554 6.655078 AAGATTCACAAACAAACCAGCTAT 57.345 33.333 0.00 0.00 0.00 2.97
4355 4555 6.272318 CAAAGATTCACAAACAAACCAGCTA 58.728 36.000 0.00 0.00 0.00 3.32
4356 4556 5.111293 CAAAGATTCACAAACAAACCAGCT 58.889 37.500 0.00 0.00 0.00 4.24
4357 4557 4.270808 CCAAAGATTCACAAACAAACCAGC 59.729 41.667 0.00 0.00 0.00 4.85
4358 4558 5.418676 ACCAAAGATTCACAAACAAACCAG 58.581 37.500 0.00 0.00 0.00 4.00
4359 4559 5.413309 ACCAAAGATTCACAAACAAACCA 57.587 34.783 0.00 0.00 0.00 3.67
4360 4560 5.457473 CGTACCAAAGATTCACAAACAAACC 59.543 40.000 0.00 0.00 0.00 3.27
4361 4561 5.051973 GCGTACCAAAGATTCACAAACAAAC 60.052 40.000 0.00 0.00 0.00 2.93
4362 4562 5.038033 GCGTACCAAAGATTCACAAACAAA 58.962 37.500 0.00 0.00 0.00 2.83
4363 4563 4.336993 AGCGTACCAAAGATTCACAAACAA 59.663 37.500 0.00 0.00 0.00 2.83
4364 4564 3.880490 AGCGTACCAAAGATTCACAAACA 59.120 39.130 0.00 0.00 0.00 2.83
4365 4565 4.483476 AGCGTACCAAAGATTCACAAAC 57.517 40.909 0.00 0.00 0.00 2.93
4366 4566 4.023536 GGAAGCGTACCAAAGATTCACAAA 60.024 41.667 0.18 0.00 34.78 2.83
4367 4567 3.500680 GGAAGCGTACCAAAGATTCACAA 59.499 43.478 0.18 0.00 34.78 3.33
4368 4568 3.071479 GGAAGCGTACCAAAGATTCACA 58.929 45.455 0.18 0.00 34.78 3.58
4369 4569 3.071479 TGGAAGCGTACCAAAGATTCAC 58.929 45.455 0.00 0.00 34.78 3.18
4370 4570 3.334691 CTGGAAGCGTACCAAAGATTCA 58.665 45.455 0.00 0.00 36.95 2.57
4385 4585 5.769484 AGCAAAGAATATCATGCTGGAAG 57.231 39.130 9.07 0.00 46.66 3.46
4391 4591 5.068987 TGGGGTAAAGCAAAGAATATCATGC 59.931 40.000 0.00 0.00 39.06 4.06
4392 4592 6.322201 ACTGGGGTAAAGCAAAGAATATCATG 59.678 38.462 0.00 0.00 0.00 3.07
4393 4593 6.322201 CACTGGGGTAAAGCAAAGAATATCAT 59.678 38.462 0.00 0.00 0.00 2.45
4394 4594 5.652014 CACTGGGGTAAAGCAAAGAATATCA 59.348 40.000 0.00 0.00 0.00 2.15
4395 4595 5.652452 ACACTGGGGTAAAGCAAAGAATATC 59.348 40.000 0.00 0.00 0.00 1.63
4396 4596 5.580022 ACACTGGGGTAAAGCAAAGAATAT 58.420 37.500 0.00 0.00 0.00 1.28
4397 4597 4.993028 ACACTGGGGTAAAGCAAAGAATA 58.007 39.130 0.00 0.00 0.00 1.75
4398 4598 3.844640 ACACTGGGGTAAAGCAAAGAAT 58.155 40.909 0.00 0.00 0.00 2.40
4399 4599 3.306472 ACACTGGGGTAAAGCAAAGAA 57.694 42.857 0.00 0.00 0.00 2.52
4400 4600 4.139038 GTTACACTGGGGTAAAGCAAAGA 58.861 43.478 0.00 0.00 35.20 2.52
4401 4601 4.023193 CAGTTACACTGGGGTAAAGCAAAG 60.023 45.833 0.00 0.00 42.35 2.77
4402 4602 3.886505 CAGTTACACTGGGGTAAAGCAAA 59.113 43.478 0.00 0.00 42.35 3.68
4403 4603 3.136809 TCAGTTACACTGGGGTAAAGCAA 59.863 43.478 4.09 0.00 45.94 3.91
4404 4604 2.706723 TCAGTTACACTGGGGTAAAGCA 59.293 45.455 4.09 0.00 45.94 3.91
4405 4605 3.007614 TCTCAGTTACACTGGGGTAAAGC 59.992 47.826 3.93 0.00 46.55 3.51
4406 4606 4.884668 TCTCAGTTACACTGGGGTAAAG 57.115 45.455 3.93 0.00 46.55 1.85
4407 4607 5.308497 TCAATCTCAGTTACACTGGGGTAAA 59.692 40.000 3.93 0.00 39.62 2.01
4408 4608 4.841813 TCAATCTCAGTTACACTGGGGTAA 59.158 41.667 3.93 0.00 39.62 2.85
4409 4609 4.422057 TCAATCTCAGTTACACTGGGGTA 58.578 43.478 3.93 0.00 39.62 3.69
4410 4610 3.248024 TCAATCTCAGTTACACTGGGGT 58.752 45.455 3.93 0.00 43.12 4.95
4411 4611 3.981071 TCAATCTCAGTTACACTGGGG 57.019 47.619 3.93 0.00 46.55 4.96
4413 4613 6.758886 GGTAAGATCAATCTCAGTTACACTGG 59.241 42.308 4.09 0.00 45.94 4.00
4415 4615 7.179338 AGTGGTAAGATCAATCTCAGTTACACT 59.821 37.037 0.00 0.00 35.76 3.55
4416 4616 7.324178 AGTGGTAAGATCAATCTCAGTTACAC 58.676 38.462 0.00 0.00 35.76 2.90
4417 4617 7.482169 AGTGGTAAGATCAATCTCAGTTACA 57.518 36.000 0.00 0.00 35.76 2.41
4418 4618 8.660373 CAAAGTGGTAAGATCAATCTCAGTTAC 58.340 37.037 0.00 0.00 35.76 2.50
4459 4659 2.102925 CCAACTTTTGCACATGTCCCTT 59.897 45.455 0.00 0.00 0.00 3.95
4511 4711 0.475828 AAGACCTAGGGCAAGTGGGT 60.476 55.000 19.45 0.00 0.00 4.51
4541 4741 1.810151 CAAAGTGTTACGACCCATGGG 59.190 52.381 30.23 30.23 42.03 4.00
4552 4752 8.588290 ATTATATTGGGAAGTGCAAAGTGTTA 57.412 30.769 0.00 0.00 0.00 2.41
4597 4797 2.747446 ACGTATTTTGGTGCCAGATGAC 59.253 45.455 0.00 0.00 0.00 3.06
4607 4807 3.395639 TCGCTCAGAAACGTATTTTGGT 58.604 40.909 0.00 0.00 0.00 3.67
4634 4834 8.301002 TGTAAAAATGGCTTTGAATGGTAGTAC 58.699 33.333 0.00 0.00 0.00 2.73
4645 4845 5.181056 GGGAATTGGTGTAAAAATGGCTTTG 59.819 40.000 0.00 0.00 0.00 2.77
4650 4850 3.843619 AGGGGGAATTGGTGTAAAAATGG 59.156 43.478 0.00 0.00 0.00 3.16
4653 4853 4.969359 TGAAAGGGGGAATTGGTGTAAAAA 59.031 37.500 0.00 0.00 0.00 1.94
4685 4885 0.704076 TGCAATAGCCAAAGGGAGGT 59.296 50.000 0.00 0.00 41.13 3.85
4688 4888 2.093553 GCAATTGCAATAGCCAAAGGGA 60.094 45.455 25.36 0.00 41.13 4.20
4790 5259 4.506654 CGTTACACTCACCATAATACAGGC 59.493 45.833 0.00 0.00 0.00 4.85
4826 5295 6.253083 GCTACTCCTTCTGTTTTCGTATGTAC 59.747 42.308 0.00 0.00 0.00 2.90
4864 5333 7.605691 CAGTCAATAGGAGAAACAGACTTGATT 59.394 37.037 0.00 0.00 33.01 2.57
5032 5501 5.300286 AGGGATGTACTCAATTATTGCAAGC 59.700 40.000 4.94 0.00 0.00 4.01
5179 5648 4.640647 CCTAACCTTAGCTGTGGGAAAATC 59.359 45.833 10.85 0.00 0.00 2.17
5295 5764 5.574970 TTATACATATGGCCCATGTGTCA 57.425 39.130 26.87 14.87 41.11 3.58
5296 5765 8.574251 TTTATTATACATATGGCCCATGTGTC 57.426 34.615 26.87 0.00 41.11 3.67
5297 5766 9.545928 AATTTATTATACATATGGCCCATGTGT 57.454 29.630 26.39 26.39 45.43 3.72
5298 5767 9.806203 CAATTTATTATACATATGGCCCATGTG 57.194 33.333 23.68 17.92 38.59 3.21
5299 5768 9.545928 ACAATTTATTATACATATGGCCCATGT 57.454 29.630 20.36 20.36 39.82 3.21
5300 5769 9.806203 CACAATTTATTATACATATGGCCCATG 57.194 33.333 6.46 11.85 0.00 3.66
5301 5770 8.477256 GCACAATTTATTATACATATGGCCCAT 58.523 33.333 7.80 0.00 0.00 4.00
5302 5771 7.093552 GGCACAATTTATTATACATATGGCCCA 60.094 37.037 7.80 0.00 0.00 5.36
5303 5772 7.093552 TGGCACAATTTATTATACATATGGCCC 60.094 37.037 7.80 0.00 31.92 5.80
5304 5773 7.835822 TGGCACAATTTATTATACATATGGCC 58.164 34.615 7.80 0.00 31.92 5.36
5429 5920 2.288395 GCCAAAATTGCAGCAGTGTACT 60.288 45.455 0.00 0.00 0.00 2.73
5430 5921 2.061028 GCCAAAATTGCAGCAGTGTAC 58.939 47.619 0.00 0.00 0.00 2.90
5431 5922 1.685517 TGCCAAAATTGCAGCAGTGTA 59.314 42.857 0.00 0.00 34.05 2.90
5432 5923 0.464870 TGCCAAAATTGCAGCAGTGT 59.535 45.000 0.00 0.00 34.05 3.55
5433 5924 1.803334 ATGCCAAAATTGCAGCAGTG 58.197 45.000 0.00 0.00 42.92 3.66
5434 5925 3.196039 TCATATGCCAAAATTGCAGCAGT 59.804 39.130 0.00 0.00 42.92 4.40
5435 5926 3.554324 GTCATATGCCAAAATTGCAGCAG 59.446 43.478 0.00 0.00 42.92 4.24
5436 5927 3.523547 GTCATATGCCAAAATTGCAGCA 58.476 40.909 0.00 0.00 42.92 4.41
5437 5928 2.867975 GGTCATATGCCAAAATTGCAGC 59.132 45.455 10.27 0.00 42.92 5.25
5438 5929 4.142116 TGAGGTCATATGCCAAAATTGCAG 60.142 41.667 15.63 0.00 42.92 4.41
5439 5930 3.768215 TGAGGTCATATGCCAAAATTGCA 59.232 39.130 15.63 0.00 43.97 4.08
5440 5931 4.389890 TGAGGTCATATGCCAAAATTGC 57.610 40.909 15.63 0.00 0.00 3.56
5441 5932 6.164876 TGTTTGAGGTCATATGCCAAAATTG 58.835 36.000 15.63 0.00 0.00 2.32
5442 5933 6.357579 TGTTTGAGGTCATATGCCAAAATT 57.642 33.333 15.63 0.00 0.00 1.82
5443 5934 5.999205 TGTTTGAGGTCATATGCCAAAAT 57.001 34.783 15.63 0.00 0.00 1.82
5444 5935 5.999205 ATGTTTGAGGTCATATGCCAAAA 57.001 34.783 15.63 12.68 0.00 2.44
5445 5936 5.999205 AATGTTTGAGGTCATATGCCAAA 57.001 34.783 15.63 11.43 0.00 3.28
5446 5937 5.999205 AAATGTTTGAGGTCATATGCCAA 57.001 34.783 15.63 7.09 0.00 4.52
5447 5938 5.245751 ACAAAATGTTTGAGGTCATATGCCA 59.754 36.000 15.63 2.08 0.00 4.92
5448 5939 5.723295 ACAAAATGTTTGAGGTCATATGCC 58.277 37.500 7.68 2.93 0.00 4.40
5449 5940 6.311200 GGAACAAAATGTTTGAGGTCATATGC 59.689 38.462 7.68 0.00 41.28 3.14
5450 5941 7.377398 TGGAACAAAATGTTTGAGGTCATATG 58.623 34.615 7.68 0.00 41.28 1.78
5451 5942 7.537596 TGGAACAAAATGTTTGAGGTCATAT 57.462 32.000 7.68 0.00 41.28 1.78
5452 5943 6.516527 GCTGGAACAAAATGTTTGAGGTCATA 60.517 38.462 7.68 0.00 41.28 2.15
5453 5944 5.739935 GCTGGAACAAAATGTTTGAGGTCAT 60.740 40.000 7.68 0.00 41.28 3.06
5454 5945 4.441356 GCTGGAACAAAATGTTTGAGGTCA 60.441 41.667 7.68 0.93 41.28 4.02
5455 5946 4.051237 GCTGGAACAAAATGTTTGAGGTC 58.949 43.478 7.68 2.58 41.28 3.85
5456 5947 3.490761 CGCTGGAACAAAATGTTTGAGGT 60.491 43.478 7.68 0.00 41.28 3.85
5457 5948 3.052036 CGCTGGAACAAAATGTTTGAGG 58.948 45.455 7.68 0.00 41.28 3.86
5458 5949 3.705604 ACGCTGGAACAAAATGTTTGAG 58.294 40.909 7.68 0.00 41.28 3.02
5459 5950 3.791973 ACGCTGGAACAAAATGTTTGA 57.208 38.095 7.68 0.00 41.28 2.69
5460 5951 5.286082 GCTATACGCTGGAACAAAATGTTTG 59.714 40.000 0.00 0.00 38.70 2.93
5461 5952 5.048364 TGCTATACGCTGGAACAAAATGTTT 60.048 36.000 0.00 0.00 39.14 2.83
5462 5953 4.457603 TGCTATACGCTGGAACAAAATGTT 59.542 37.500 0.00 0.00 40.72 2.71
5463 5954 4.006989 TGCTATACGCTGGAACAAAATGT 58.993 39.130 0.00 0.00 38.70 2.71
5464 5955 4.094887 ACTGCTATACGCTGGAACAAAATG 59.905 41.667 0.00 0.00 41.39 2.32
5465 5956 4.261801 ACTGCTATACGCTGGAACAAAAT 58.738 39.130 0.00 0.00 41.39 1.82
5466 5957 3.670625 ACTGCTATACGCTGGAACAAAA 58.329 40.909 0.00 0.00 41.39 2.44
5467 5958 3.328382 ACTGCTATACGCTGGAACAAA 57.672 42.857 0.00 0.00 41.39 2.83
5468 5959 3.193903 TGTACTGCTATACGCTGGAACAA 59.806 43.478 0.00 0.00 41.39 2.83
5469 5960 2.756207 TGTACTGCTATACGCTGGAACA 59.244 45.455 0.00 0.00 41.39 3.18
5470 5961 3.431922 TGTACTGCTATACGCTGGAAC 57.568 47.619 0.00 0.00 41.39 3.62
5471 5962 4.368315 CAATGTACTGCTATACGCTGGAA 58.632 43.478 0.00 0.00 41.39 3.53
5472 5963 3.798889 GCAATGTACTGCTATACGCTGGA 60.799 47.826 0.04 0.00 41.39 3.86
5473 5964 2.476619 GCAATGTACTGCTATACGCTGG 59.523 50.000 0.04 0.00 41.39 4.85
5474 5965 3.777807 GCAATGTACTGCTATACGCTG 57.222 47.619 0.04 0.00 42.62 5.18
5484 5975 3.173599 CCAAAATCGCAGCAATGTACTG 58.826 45.455 0.00 0.00 38.22 2.74
5485 5976 2.415893 GCCAAAATCGCAGCAATGTACT 60.416 45.455 0.00 0.00 0.00 2.73
5486 5977 1.919918 GCCAAAATCGCAGCAATGTAC 59.080 47.619 0.00 0.00 0.00 2.90
5487 5978 1.543358 TGCCAAAATCGCAGCAATGTA 59.457 42.857 0.00 0.00 30.97 2.29
5488 5979 0.317799 TGCCAAAATCGCAGCAATGT 59.682 45.000 0.00 0.00 30.97 2.71
5489 5980 1.647346 ATGCCAAAATCGCAGCAATG 58.353 45.000 0.00 0.00 40.15 2.82
5490 5981 3.068448 TCATATGCCAAAATCGCAGCAAT 59.932 39.130 0.00 0.00 40.15 3.56
5491 5982 2.426381 TCATATGCCAAAATCGCAGCAA 59.574 40.909 0.00 0.00 40.15 3.91
5492 5983 2.022934 TCATATGCCAAAATCGCAGCA 58.977 42.857 0.00 0.00 40.15 4.41
5493 5984 2.388121 GTCATATGCCAAAATCGCAGC 58.612 47.619 0.00 0.00 40.15 5.25
5494 5985 2.620115 AGGTCATATGCCAAAATCGCAG 59.380 45.455 15.63 0.00 40.15 5.18
5495 5986 2.618241 GAGGTCATATGCCAAAATCGCA 59.382 45.455 15.63 0.00 41.28 5.10
5496 5987 2.618241 TGAGGTCATATGCCAAAATCGC 59.382 45.455 15.63 0.00 0.00 4.58
5497 5988 4.898829 TTGAGGTCATATGCCAAAATCG 57.101 40.909 15.63 0.00 0.00 3.34
5498 5989 5.964758 TGTTTGAGGTCATATGCCAAAATC 58.035 37.500 15.63 7.29 0.00 2.17
5499 5990 5.999205 TGTTTGAGGTCATATGCCAAAAT 57.001 34.783 15.63 0.00 0.00 1.82
5500 5991 5.999205 ATGTTTGAGGTCATATGCCAAAA 57.001 34.783 15.63 12.68 0.00 2.44
5501 5992 5.999205 AATGTTTGAGGTCATATGCCAAA 57.001 34.783 15.63 11.43 0.00 3.28
5502 5993 5.999205 AAATGTTTGAGGTCATATGCCAA 57.001 34.783 15.63 7.09 0.00 4.52
5503 5994 5.245751 ACAAAATGTTTGAGGTCATATGCCA 59.754 36.000 15.63 2.08 0.00 4.92
5504 5995 5.723295 ACAAAATGTTTGAGGTCATATGCC 58.277 37.500 7.68 2.93 0.00 4.40
5505 5996 6.311200 GGAACAAAATGTTTGAGGTCATATGC 59.689 38.462 7.68 0.00 41.28 3.14
5506 5997 7.377398 TGGAACAAAATGTTTGAGGTCATATG 58.623 34.615 7.68 0.00 41.28 1.78
5507 5998 7.537596 TGGAACAAAATGTTTGAGGTCATAT 57.462 32.000 7.68 0.00 41.28 1.78
5508 5999 6.516527 GCTGGAACAAAATGTTTGAGGTCATA 60.517 38.462 7.68 0.00 41.28 2.15
5509 6000 5.739935 GCTGGAACAAAATGTTTGAGGTCAT 60.740 40.000 7.68 0.00 41.28 3.06
5510 6001 4.441356 GCTGGAACAAAATGTTTGAGGTCA 60.441 41.667 7.68 0.93 41.28 4.02
5511 6002 4.051237 GCTGGAACAAAATGTTTGAGGTC 58.949 43.478 7.68 2.58 41.28 3.85
5512 6003 3.490761 CGCTGGAACAAAATGTTTGAGGT 60.491 43.478 7.68 0.00 41.28 3.85
5513 6004 3.052036 CGCTGGAACAAAATGTTTGAGG 58.948 45.455 7.68 0.00 41.28 3.86
5514 6005 3.705604 ACGCTGGAACAAAATGTTTGAG 58.294 40.909 7.68 0.00 41.28 3.02
5515 6006 3.791973 ACGCTGGAACAAAATGTTTGA 57.208 38.095 7.68 0.00 41.28 2.69
5516 6007 5.286082 GCTATACGCTGGAACAAAATGTTTG 59.714 40.000 0.00 0.00 38.70 2.93
5517 6008 5.048364 TGCTATACGCTGGAACAAAATGTTT 60.048 36.000 0.00 0.00 39.14 2.83
5518 6009 4.457603 TGCTATACGCTGGAACAAAATGTT 59.542 37.500 0.00 0.00 40.72 2.71
5519 6010 4.006989 TGCTATACGCTGGAACAAAATGT 58.993 39.130 0.00 0.00 38.70 2.71
5520 6011 4.094887 ACTGCTATACGCTGGAACAAAATG 59.905 41.667 0.00 0.00 41.39 2.32
5521 6012 4.261801 ACTGCTATACGCTGGAACAAAAT 58.738 39.130 0.00 0.00 41.39 1.82
5522 6013 3.670625 ACTGCTATACGCTGGAACAAAA 58.329 40.909 0.00 0.00 41.39 2.44
5523 6014 3.328382 ACTGCTATACGCTGGAACAAA 57.672 42.857 0.00 0.00 41.39 2.83
5524 6015 3.193903 TGTACTGCTATACGCTGGAACAA 59.806 43.478 0.00 0.00 41.39 2.83
5525 6016 2.756207 TGTACTGCTATACGCTGGAACA 59.244 45.455 0.00 0.00 41.39 3.18
5526 6017 3.114065 GTGTACTGCTATACGCTGGAAC 58.886 50.000 0.00 0.00 41.39 3.62
5527 6018 3.021695 AGTGTACTGCTATACGCTGGAA 58.978 45.455 11.65 0.00 42.83 3.53
5528 6019 2.651455 AGTGTACTGCTATACGCTGGA 58.349 47.619 11.65 0.00 42.83 3.86
5540 6031 2.413239 CCAAAATCGCAGCAGTGTACTG 60.413 50.000 7.64 7.64 46.40 2.74
6058 6549 1.443407 CATAGCCCACTCTGGACCG 59.557 63.158 0.00 0.00 40.96 4.79
6073 6564 5.754782 ACCTGAGGAATTATGTGTTGCATA 58.245 37.500 4.99 0.00 38.94 3.14
6147 6638 1.218047 CTTAGCTGCGGGTGTGCTA 59.782 57.895 7.69 0.00 38.15 3.49
6237 6728 9.777297 AAAACATCATTAATGCAAAAGGTACTT 57.223 25.926 10.76 0.00 45.55 2.24
6527 7018 7.219484 AGTATGTCAGCAAAGCACTAAAATT 57.781 32.000 0.00 0.00 0.00 1.82
6555 7046 2.210116 TGTTCGGCACTCTGAAAGTTC 58.790 47.619 0.00 0.00 39.15 3.01
6727 7218 1.270518 GGCTTCACAGTCTTCTCAGCA 60.271 52.381 0.00 0.00 0.00 4.41
6864 7355 9.308318 CTGGACTAAGAATAGCTTCTAAAGAAC 57.692 37.037 0.00 0.00 40.93 3.01
6923 7414 7.565398 AGATTACTGGGCTAGAAATAACTCTCA 59.435 37.037 4.33 0.00 0.00 3.27
6931 7422 9.257428 GTATAGGTAGATTACTGGGCTAGAAAT 57.743 37.037 4.33 0.00 0.00 2.17
6948 7439 7.984050 CCATTATCAGCATGGAAGTATAGGTAG 59.016 40.741 0.00 0.00 43.70 3.18
7039 7530 7.701539 AACTATCAATTTAAGCACACCATCA 57.298 32.000 0.00 0.00 0.00 3.07
7084 7575 0.104671 AAAGCACACCCAACACATGC 59.895 50.000 0.00 0.00 36.52 4.06
7100 7591 4.555262 ACAATGGTTGCATTCGGTAAAAG 58.445 39.130 0.00 0.00 0.00 2.27
7175 7667 1.288633 TCATGGGCATTTCATCCACCT 59.711 47.619 0.00 0.00 32.90 4.00
7176 7668 1.779221 TCATGGGCATTTCATCCACC 58.221 50.000 0.00 0.00 32.90 4.61
7184 7676 3.175594 ACCAGTTGATTCATGGGCATTT 58.824 40.909 10.34 0.00 38.48 2.32
7198 7690 3.128349 AGTACTTGCACGTTACCAGTTG 58.872 45.455 0.00 0.00 0.00 3.16
7199 7691 3.464111 AGTACTTGCACGTTACCAGTT 57.536 42.857 0.00 0.00 0.00 3.16
7200 7692 4.796038 ATAGTACTTGCACGTTACCAGT 57.204 40.909 0.00 0.00 0.00 4.00
7201 7693 7.585286 TTAAATAGTACTTGCACGTTACCAG 57.415 36.000 0.00 0.00 0.00 4.00
7203 7695 8.658609 TGAATTAAATAGTACTTGCACGTTACC 58.341 33.333 0.00 0.00 0.00 2.85
7233 7725 9.181061 GAAACCTTAACTATGGGCTATTAACAA 57.819 33.333 0.00 0.00 0.00 2.83
7354 7851 3.992427 CCCTTCTTTGAAGATGCAAAAGC 59.008 43.478 8.69 0.00 37.32 3.51
7519 10022 2.696989 ATGGTCGATGATGCACTTCA 57.303 45.000 0.00 0.00 0.00 3.02
7549 10085 8.958119 TGAGACAATTGACTTTTACTTGTAGT 57.042 30.769 13.59 0.00 30.63 2.73
7589 10125 3.875727 TGTGTGCATTTTCATTTGTTGGG 59.124 39.130 0.00 0.00 0.00 4.12
7610 10146 4.393062 AGAGGACGCAAATTGAGTAATGTG 59.607 41.667 1.66 0.00 35.09 3.21
7615 10153 4.385825 ACAAAGAGGACGCAAATTGAGTA 58.614 39.130 1.66 0.00 28.29 2.59
7736 10278 4.098349 GGAAGATGGCAATGAATGTGCTTA 59.902 41.667 0.00 0.00 41.88 3.09
7788 10330 1.497716 ACATGATGAGTGGCATGGGAT 59.502 47.619 0.00 0.00 44.64 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.