Multiple sequence alignment - TraesCS5A01G168000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G168000 chr5A 100.000 2549 0 0 1 2549 357171698 357169150 0 4708
1 TraesCS5A01G168000 chr5A 94.710 586 29 2 1 584 87435637 87436222 0 909
2 TraesCS5A01G168000 chr5A 96.680 482 16 0 2068 2549 689408075 689407594 0 802
3 TraesCS5A01G168000 chr5A 96.281 484 16 1 2068 2549 703918498 703918015 0 793
4 TraesCS5A01G168000 chr6A 96.984 1492 44 1 585 2075 57901156 57902647 0 2505
5 TraesCS5A01G168000 chr6A 96.785 1493 42 3 588 2075 203520912 203519421 0 2486
6 TraesCS5A01G168000 chr6A 96.473 482 16 1 2068 2549 61538744 61538264 0 795
7 TraesCS5A01G168000 chr2A 96.844 1489 46 1 588 2075 233255261 233256749 0 2488
8 TraesCS5A01G168000 chr2A 96.376 1490 52 1 588 2075 611725136 611723647 0 2451
9 TraesCS5A01G168000 chr2A 94.758 1488 75 2 588 2075 674415062 674413578 0 2313
10 TraesCS5A01G168000 chr2D 95.436 1490 64 3 588 2075 498471644 498470157 0 2372
11 TraesCS5A01G168000 chr2D 95.497 1488 60 6 588 2075 547242743 547241263 0 2370
12 TraesCS5A01G168000 chr2D 94.898 588 28 2 1 587 216211338 216210752 0 918
13 TraesCS5A01G168000 chr1D 94.110 1511 62 9 588 2075 17040736 17039230 0 2272
14 TraesCS5A01G168000 chr1D 94.872 585 29 1 1 584 183198322 183198906 0 913
15 TraesCS5A01G168000 chr1D 94.719 587 28 2 1 584 183156167 183156753 0 909
16 TraesCS5A01G168000 chr5D 94.048 1512 61 11 588 2075 275163198 275161692 0 2266
17 TraesCS5A01G168000 chr5D 95.076 589 27 2 1 587 472660311 472660899 0 926
18 TraesCS5A01G168000 chr2B 90.013 1522 112 15 590 2075 710554482 710552965 0 1932
19 TraesCS5A01G168000 chr2B 89.815 1512 98 22 588 2075 485690852 485692331 0 1888
20 TraesCS5A01G168000 chr6D 95.214 585 27 1 1 584 379794832 379795416 0 924
21 TraesCS5A01G168000 chr6D 95.034 584 28 1 1 583 301300846 301300263 0 917
22 TraesCS5A01G168000 chr7D 95.051 586 26 3 1 584 407658335 407658919 0 918
23 TraesCS5A01G168000 chr1A 95.043 585 28 1 1 584 287521796 287522380 0 918
24 TraesCS5A01G168000 chr1A 96.701 485 13 1 2068 2549 531498455 531497971 0 804
25 TraesCS5A01G168000 chrUn 96.289 485 15 1 2068 2549 353552260 353551776 0 793
26 TraesCS5A01G168000 chr3A 96.289 485 15 1 2068 2549 735556892 735557376 0 793
27 TraesCS5A01G168000 chr7A 96.091 486 15 1 2068 2549 689994817 689994332 0 789
28 TraesCS5A01G168000 chr7A 96.082 485 16 1 2068 2549 36947721 36948205 0 787
29 TraesCS5A01G168000 chr5B 96.082 485 16 1 2068 2549 206049872 206049388 0 787


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G168000 chr5A 357169150 357171698 2548 True 4708 4708 100.000 1 2549 1 chr5A.!!$R1 2548
1 TraesCS5A01G168000 chr5A 87435637 87436222 585 False 909 909 94.710 1 584 1 chr5A.!!$F1 583
2 TraesCS5A01G168000 chr6A 57901156 57902647 1491 False 2505 2505 96.984 585 2075 1 chr6A.!!$F1 1490
3 TraesCS5A01G168000 chr6A 203519421 203520912 1491 True 2486 2486 96.785 588 2075 1 chr6A.!!$R2 1487
4 TraesCS5A01G168000 chr2A 233255261 233256749 1488 False 2488 2488 96.844 588 2075 1 chr2A.!!$F1 1487
5 TraesCS5A01G168000 chr2A 611723647 611725136 1489 True 2451 2451 96.376 588 2075 1 chr2A.!!$R1 1487
6 TraesCS5A01G168000 chr2A 674413578 674415062 1484 True 2313 2313 94.758 588 2075 1 chr2A.!!$R2 1487
7 TraesCS5A01G168000 chr2D 498470157 498471644 1487 True 2372 2372 95.436 588 2075 1 chr2D.!!$R2 1487
8 TraesCS5A01G168000 chr2D 547241263 547242743 1480 True 2370 2370 95.497 588 2075 1 chr2D.!!$R3 1487
9 TraesCS5A01G168000 chr2D 216210752 216211338 586 True 918 918 94.898 1 587 1 chr2D.!!$R1 586
10 TraesCS5A01G168000 chr1D 17039230 17040736 1506 True 2272 2272 94.110 588 2075 1 chr1D.!!$R1 1487
11 TraesCS5A01G168000 chr1D 183198322 183198906 584 False 913 913 94.872 1 584 1 chr1D.!!$F2 583
12 TraesCS5A01G168000 chr1D 183156167 183156753 586 False 909 909 94.719 1 584 1 chr1D.!!$F1 583
13 TraesCS5A01G168000 chr5D 275161692 275163198 1506 True 2266 2266 94.048 588 2075 1 chr5D.!!$R1 1487
14 TraesCS5A01G168000 chr5D 472660311 472660899 588 False 926 926 95.076 1 587 1 chr5D.!!$F1 586
15 TraesCS5A01G168000 chr2B 710552965 710554482 1517 True 1932 1932 90.013 590 2075 1 chr2B.!!$R1 1485
16 TraesCS5A01G168000 chr2B 485690852 485692331 1479 False 1888 1888 89.815 588 2075 1 chr2B.!!$F1 1487
17 TraesCS5A01G168000 chr6D 379794832 379795416 584 False 924 924 95.214 1 584 1 chr6D.!!$F1 583
18 TraesCS5A01G168000 chr6D 301300263 301300846 583 True 917 917 95.034 1 583 1 chr6D.!!$R1 582
19 TraesCS5A01G168000 chr7D 407658335 407658919 584 False 918 918 95.051 1 584 1 chr7D.!!$F1 583
20 TraesCS5A01G168000 chr1A 287521796 287522380 584 False 918 918 95.043 1 584 1 chr1A.!!$F1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 876 1.067776 GCTATATAAGCGGGCGACAGT 60.068 52.381 0.0 0.0 42.53 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2460 2543 0.332972 AATTGGAGGGGGTGAGAAGC 59.667 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.126151 TGTTGATTCCAAAGTAACTATTCACAA 57.874 29.630 0.00 0.00 33.49 3.33
178 179 1.359474 AGGAGCTGAGAACCCAGTAGA 59.641 52.381 0.00 0.00 36.57 2.59
234 235 6.329986 TGATGACCCACTACCTATTGATGATT 59.670 38.462 0.00 0.00 0.00 2.57
494 500 3.914426 AATGTCACTCCGAGGCTTATT 57.086 42.857 0.00 0.00 0.00 1.40
500 506 1.343075 ACTCCGAGGCTTATTGAGGGA 60.343 52.381 0.00 0.00 0.00 4.20
516 522 3.975982 TGAGGGAATCATGCTGGAGATAA 59.024 43.478 0.00 0.00 31.12 1.75
523 529 2.938451 TCATGCTGGAGATAAAACTGCG 59.062 45.455 0.00 0.00 32.60 5.18
542 548 4.384940 TGCGCATAAGGTATTGCAATCTA 58.615 39.130 16.86 4.20 0.00 1.98
641 647 3.569194 TGTACTCAGTTTTGCCCTCAA 57.431 42.857 0.00 0.00 0.00 3.02
851 876 1.067776 GCTATATAAGCGGGCGACAGT 60.068 52.381 0.00 0.00 42.53 3.55
878 903 1.376424 CCACGGCAACAGAGAGCAT 60.376 57.895 0.00 0.00 0.00 3.79
1043 1099 4.519437 CTCGCGGATGCAGAGCCA 62.519 66.667 6.13 0.00 42.97 4.75
1127 1183 0.112606 TCTCAGACACCGAGGAACCT 59.887 55.000 0.00 0.00 0.00 3.50
1235 1291 3.243401 GGGTTGATCTGTTTGGTGTTCAC 60.243 47.826 0.00 0.00 0.00 3.18
1406 1463 0.808125 CGCACTGACAGAGAGCTAGT 59.192 55.000 10.08 0.00 36.21 2.57
1508 1565 4.787551 TGGGCATTTGTAGGTATGGTAAG 58.212 43.478 0.00 0.00 0.00 2.34
1743 1805 1.275856 CTCTGCTCTGCCTTTCTGTCT 59.724 52.381 0.00 0.00 0.00 3.41
1745 1808 2.495270 TCTGCTCTGCCTTTCTGTCTAG 59.505 50.000 0.00 0.00 0.00 2.43
2056 2139 4.162509 GCCTCAACTCTGGTAGAGGTTTAT 59.837 45.833 10.31 0.00 39.81 1.40
2075 2158 3.615224 ATGCCAGGTGCCAAAATAAAG 57.385 42.857 0.00 0.00 40.16 1.85
2076 2159 1.622811 TGCCAGGTGCCAAAATAAAGG 59.377 47.619 0.00 0.00 40.16 3.11
2077 2160 1.066215 GCCAGGTGCCAAAATAAAGGG 60.066 52.381 0.00 0.00 0.00 3.95
2078 2161 2.256306 CCAGGTGCCAAAATAAAGGGT 58.744 47.619 0.00 0.00 0.00 4.34
2079 2162 2.028203 CCAGGTGCCAAAATAAAGGGTG 60.028 50.000 0.00 0.00 0.00 4.61
2080 2163 2.028203 CAGGTGCCAAAATAAAGGGTGG 60.028 50.000 0.00 0.00 0.00 4.61
2081 2164 2.158234 AGGTGCCAAAATAAAGGGTGGA 60.158 45.455 0.00 0.00 32.54 4.02
2082 2165 2.635427 GGTGCCAAAATAAAGGGTGGAA 59.365 45.455 0.00 0.00 32.54 3.53
2083 2166 3.071747 GGTGCCAAAATAAAGGGTGGAAA 59.928 43.478 0.00 0.00 32.54 3.13
2084 2167 4.445019 GGTGCCAAAATAAAGGGTGGAAAA 60.445 41.667 0.00 0.00 32.54 2.29
2085 2168 5.312895 GTGCCAAAATAAAGGGTGGAAAAT 58.687 37.500 0.00 0.00 32.54 1.82
2086 2169 5.181056 GTGCCAAAATAAAGGGTGGAAAATG 59.819 40.000 0.00 0.00 32.54 2.32
2087 2170 4.155826 GCCAAAATAAAGGGTGGAAAATGC 59.844 41.667 0.00 0.00 32.54 3.56
2088 2171 5.312079 CCAAAATAAAGGGTGGAAAATGCA 58.688 37.500 0.00 0.00 32.54 3.96
2089 2172 5.181056 CCAAAATAAAGGGTGGAAAATGCAC 59.819 40.000 0.00 0.00 38.03 4.57
2090 2173 5.559148 AAATAAAGGGTGGAAAATGCACA 57.441 34.783 4.42 0.00 40.73 4.57
2091 2174 5.559148 AATAAAGGGTGGAAAATGCACAA 57.441 34.783 4.42 0.00 40.73 3.33
2092 2175 3.922171 AAAGGGTGGAAAATGCACAAA 57.078 38.095 4.42 0.00 40.73 2.83
2093 2176 3.922171 AAGGGTGGAAAATGCACAAAA 57.078 38.095 4.42 0.00 40.73 2.44
2094 2177 3.922171 AGGGTGGAAAATGCACAAAAA 57.078 38.095 4.42 0.00 40.73 1.94
2109 2192 1.370810 AAAAATTGGTGCGGCTGGG 59.629 52.632 0.00 0.00 0.00 4.45
2110 2193 2.110757 AAAAATTGGTGCGGCTGGGG 62.111 55.000 0.00 0.00 0.00 4.96
2111 2194 3.521765 AAATTGGTGCGGCTGGGGA 62.522 57.895 0.00 0.00 0.00 4.81
2112 2195 4.740822 ATTGGTGCGGCTGGGGAC 62.741 66.667 0.00 0.00 0.00 4.46
2125 2208 2.979649 GGGACTCGGACCCAAGAC 59.020 66.667 0.00 0.00 46.05 3.01
2126 2209 2.657066 GGGACTCGGACCCAAGACC 61.657 68.421 0.00 2.56 46.05 3.85
2142 2225 3.959975 CCGCGTGGGTTTGTGGTG 61.960 66.667 7.26 0.00 0.00 4.17
2143 2226 3.206246 CGCGTGGGTTTGTGGTGT 61.206 61.111 0.00 0.00 0.00 4.16
2144 2227 2.766400 CGCGTGGGTTTGTGGTGTT 61.766 57.895 0.00 0.00 0.00 3.32
2145 2228 1.513622 GCGTGGGTTTGTGGTGTTT 59.486 52.632 0.00 0.00 0.00 2.83
2146 2229 0.739561 GCGTGGGTTTGTGGTGTTTA 59.260 50.000 0.00 0.00 0.00 2.01
2147 2230 1.268845 GCGTGGGTTTGTGGTGTTTAG 60.269 52.381 0.00 0.00 0.00 1.85
2148 2231 1.335496 CGTGGGTTTGTGGTGTTTAGG 59.665 52.381 0.00 0.00 0.00 2.69
2149 2232 1.684450 GTGGGTTTGTGGTGTTTAGGG 59.316 52.381 0.00 0.00 0.00 3.53
2150 2233 0.677288 GGGTTTGTGGTGTTTAGGGC 59.323 55.000 0.00 0.00 0.00 5.19
2151 2234 1.699730 GGTTTGTGGTGTTTAGGGCT 58.300 50.000 0.00 0.00 0.00 5.19
2152 2235 1.339929 GGTTTGTGGTGTTTAGGGCTG 59.660 52.381 0.00 0.00 0.00 4.85
2153 2236 1.036707 TTTGTGGTGTTTAGGGCTGC 58.963 50.000 0.00 0.00 0.00 5.25
2154 2237 1.169661 TTGTGGTGTTTAGGGCTGCG 61.170 55.000 0.00 0.00 0.00 5.18
2155 2238 2.671619 TGGTGTTTAGGGCTGCGC 60.672 61.111 8.86 8.86 0.00 6.09
2156 2239 2.359975 GGTGTTTAGGGCTGCGCT 60.360 61.111 22.98 22.98 0.00 5.92
2157 2240 2.690778 GGTGTTTAGGGCTGCGCTG 61.691 63.158 27.01 10.04 0.00 5.18
2158 2241 2.359850 TGTTTAGGGCTGCGCTGG 60.360 61.111 27.01 6.50 0.00 4.85
2159 2242 2.359975 GTTTAGGGCTGCGCTGGT 60.360 61.111 27.01 5.85 0.00 4.00
2160 2243 1.078708 GTTTAGGGCTGCGCTGGTA 60.079 57.895 27.01 10.98 0.00 3.25
2161 2244 0.675522 GTTTAGGGCTGCGCTGGTAA 60.676 55.000 27.01 15.70 0.00 2.85
2162 2245 0.675522 TTTAGGGCTGCGCTGGTAAC 60.676 55.000 27.01 0.00 0.00 2.50
2163 2246 1.550130 TTAGGGCTGCGCTGGTAACT 61.550 55.000 27.01 3.65 37.61 2.24
2164 2247 2.238847 TAGGGCTGCGCTGGTAACTG 62.239 60.000 27.01 0.00 38.80 3.16
2176 2259 4.052159 CTGGTAACTGCTAGGACAGATG 57.948 50.000 4.57 0.00 40.25 2.90
2177 2260 2.766263 TGGTAACTGCTAGGACAGATGG 59.234 50.000 4.57 0.00 40.25 3.51
2178 2261 2.483889 GGTAACTGCTAGGACAGATGGC 60.484 54.545 4.57 0.00 40.25 4.40
2179 2262 1.279496 AACTGCTAGGACAGATGGCA 58.721 50.000 4.57 0.00 40.25 4.92
2180 2263 1.279496 ACTGCTAGGACAGATGGCAA 58.721 50.000 4.57 0.00 40.25 4.52
2181 2264 1.209019 ACTGCTAGGACAGATGGCAAG 59.791 52.381 4.57 0.00 40.25 4.01
2182 2265 1.483827 CTGCTAGGACAGATGGCAAGA 59.516 52.381 0.00 0.00 40.25 3.02
2183 2266 1.208052 TGCTAGGACAGATGGCAAGAC 59.792 52.381 0.00 0.00 30.56 3.01
2184 2267 1.484240 GCTAGGACAGATGGCAAGACT 59.516 52.381 0.00 0.00 0.00 3.24
2185 2268 2.093235 GCTAGGACAGATGGCAAGACTT 60.093 50.000 0.00 0.00 0.00 3.01
2186 2269 3.620966 GCTAGGACAGATGGCAAGACTTT 60.621 47.826 0.00 0.00 0.00 2.66
2187 2270 2.787994 AGGACAGATGGCAAGACTTTG 58.212 47.619 0.00 0.00 37.36 2.77
2188 2271 2.373169 AGGACAGATGGCAAGACTTTGA 59.627 45.455 0.00 0.00 36.36 2.69
2189 2272 2.485814 GGACAGATGGCAAGACTTTGAC 59.514 50.000 0.00 0.00 43.00 3.18
2195 2278 1.620822 GGCAAGACTTTGACATGGGT 58.379 50.000 0.00 0.00 42.21 4.51
2196 2279 2.790433 GGCAAGACTTTGACATGGGTA 58.210 47.619 0.00 0.00 42.21 3.69
2197 2280 2.749621 GGCAAGACTTTGACATGGGTAG 59.250 50.000 0.00 0.00 42.21 3.18
2198 2281 2.749621 GCAAGACTTTGACATGGGTAGG 59.250 50.000 0.00 0.00 36.36 3.18
2199 2282 3.347216 CAAGACTTTGACATGGGTAGGG 58.653 50.000 0.00 0.00 36.36 3.53
2200 2283 2.915869 AGACTTTGACATGGGTAGGGA 58.084 47.619 0.00 0.00 0.00 4.20
2201 2284 3.256704 AGACTTTGACATGGGTAGGGAA 58.743 45.455 0.00 0.00 0.00 3.97
2202 2285 3.264450 AGACTTTGACATGGGTAGGGAAG 59.736 47.826 0.00 0.00 0.00 3.46
2203 2286 2.308866 ACTTTGACATGGGTAGGGAAGG 59.691 50.000 0.00 0.00 0.00 3.46
2204 2287 2.352561 TTGACATGGGTAGGGAAGGA 57.647 50.000 0.00 0.00 0.00 3.36
2205 2288 2.352561 TGACATGGGTAGGGAAGGAA 57.647 50.000 0.00 0.00 0.00 3.36
2206 2289 2.196595 TGACATGGGTAGGGAAGGAAG 58.803 52.381 0.00 0.00 0.00 3.46
2207 2290 1.490910 GACATGGGTAGGGAAGGAAGG 59.509 57.143 0.00 0.00 0.00 3.46
2208 2291 1.203570 ACATGGGTAGGGAAGGAAGGT 60.204 52.381 0.00 0.00 0.00 3.50
2209 2292 2.046729 ACATGGGTAGGGAAGGAAGGTA 59.953 50.000 0.00 0.00 0.00 3.08
2210 2293 3.312155 ACATGGGTAGGGAAGGAAGGTAT 60.312 47.826 0.00 0.00 0.00 2.73
2211 2294 4.077626 ACATGGGTAGGGAAGGAAGGTATA 60.078 45.833 0.00 0.00 0.00 1.47
2212 2295 3.932601 TGGGTAGGGAAGGAAGGTATAC 58.067 50.000 0.00 0.00 0.00 1.47
2213 2296 3.275497 TGGGTAGGGAAGGAAGGTATACA 59.725 47.826 5.01 0.00 0.00 2.29
2214 2297 4.077626 TGGGTAGGGAAGGAAGGTATACAT 60.078 45.833 5.01 0.00 0.00 2.29
2215 2298 5.138297 TGGGTAGGGAAGGAAGGTATACATA 59.862 44.000 5.01 0.00 0.00 2.29
2216 2299 5.720520 GGGTAGGGAAGGAAGGTATACATAG 59.279 48.000 5.01 0.00 0.00 2.23
2217 2300 6.321321 GGTAGGGAAGGAAGGTATACATAGT 58.679 44.000 5.01 0.00 0.00 2.12
2218 2301 6.210984 GGTAGGGAAGGAAGGTATACATAGTG 59.789 46.154 5.01 0.00 0.00 2.74
2219 2302 6.039415 AGGGAAGGAAGGTATACATAGTGA 57.961 41.667 5.01 0.00 0.00 3.41
2220 2303 6.078664 AGGGAAGGAAGGTATACATAGTGAG 58.921 44.000 5.01 0.00 0.00 3.51
2221 2304 6.075984 GGGAAGGAAGGTATACATAGTGAGA 58.924 44.000 5.01 0.00 0.00 3.27
2222 2305 6.015265 GGGAAGGAAGGTATACATAGTGAGAC 60.015 46.154 5.01 0.00 0.00 3.36
2223 2306 6.778559 GGAAGGAAGGTATACATAGTGAGACT 59.221 42.308 5.01 0.00 0.00 3.24
2224 2307 7.255660 GGAAGGAAGGTATACATAGTGAGACTG 60.256 44.444 5.01 0.00 0.00 3.51
2225 2308 6.674573 AGGAAGGTATACATAGTGAGACTGT 58.325 40.000 5.01 0.00 0.00 3.55
2226 2309 6.547880 AGGAAGGTATACATAGTGAGACTGTG 59.452 42.308 5.01 0.00 42.18 3.66
2227 2310 6.546403 GGAAGGTATACATAGTGAGACTGTGA 59.454 42.308 5.01 0.00 39.34 3.58
2228 2311 7.068348 GGAAGGTATACATAGTGAGACTGTGAA 59.932 40.741 5.01 0.00 39.34 3.18
2229 2312 8.540507 AAGGTATACATAGTGAGACTGTGAAT 57.459 34.615 5.01 0.00 39.34 2.57
2230 2313 8.540507 AGGTATACATAGTGAGACTGTGAATT 57.459 34.615 5.01 0.00 39.34 2.17
2231 2314 8.982723 AGGTATACATAGTGAGACTGTGAATTT 58.017 33.333 5.01 0.00 39.34 1.82
2232 2315 9.601217 GGTATACATAGTGAGACTGTGAATTTT 57.399 33.333 5.01 0.00 39.34 1.82
2260 2343 6.877611 AAAAATAGTGAGACCGTGAATGTT 57.122 33.333 0.00 0.00 0.00 2.71
2261 2344 6.877611 AAAATAGTGAGACCGTGAATGTTT 57.122 33.333 0.00 0.00 0.00 2.83
2262 2345 5.862924 AATAGTGAGACCGTGAATGTTTG 57.137 39.130 0.00 0.00 0.00 2.93
2263 2346 1.873591 AGTGAGACCGTGAATGTTTGC 59.126 47.619 0.00 0.00 0.00 3.68
2264 2347 1.601903 GTGAGACCGTGAATGTTTGCA 59.398 47.619 0.00 0.00 0.00 4.08
2265 2348 1.601903 TGAGACCGTGAATGTTTGCAC 59.398 47.619 0.00 0.00 0.00 4.57
2266 2349 1.601903 GAGACCGTGAATGTTTGCACA 59.398 47.619 0.00 0.00 37.31 4.57
2267 2350 2.226437 GAGACCGTGAATGTTTGCACAT 59.774 45.455 0.00 0.00 46.34 3.21
2268 2351 2.030893 AGACCGTGAATGTTTGCACATG 60.031 45.455 0.00 0.00 43.34 3.21
2269 2352 1.062258 CCGTGAATGTTTGCACATGC 58.938 50.000 0.00 0.00 43.34 4.06
2270 2353 0.704008 CGTGAATGTTTGCACATGCG 59.296 50.000 0.00 0.00 43.34 4.73
2271 2354 1.769733 GTGAATGTTTGCACATGCGT 58.230 45.000 0.00 0.00 43.34 5.24
2272 2355 1.452773 GTGAATGTTTGCACATGCGTG 59.547 47.619 3.82 3.82 43.34 5.34
2273 2356 1.336125 TGAATGTTTGCACATGCGTGA 59.664 42.857 14.17 0.00 46.80 4.35
2274 2357 1.980844 GAATGTTTGCACATGCGTGAG 59.019 47.619 14.17 5.85 46.80 3.51
2275 2358 1.237533 ATGTTTGCACATGCGTGAGA 58.762 45.000 14.17 0.00 46.80 3.27
2276 2359 0.587768 TGTTTGCACATGCGTGAGAG 59.412 50.000 14.17 3.19 46.80 3.20
2277 2360 0.588252 GTTTGCACATGCGTGAGAGT 59.412 50.000 14.17 0.00 46.80 3.24
2278 2361 0.587768 TTTGCACATGCGTGAGAGTG 59.412 50.000 14.17 0.96 46.80 3.51
2279 2362 1.229975 TTGCACATGCGTGAGAGTGG 61.230 55.000 14.17 0.00 46.80 4.00
2280 2363 1.669115 GCACATGCGTGAGAGTGGT 60.669 57.895 14.17 0.00 46.80 4.16
2281 2364 1.230635 GCACATGCGTGAGAGTGGTT 61.231 55.000 14.17 0.00 46.80 3.67
2282 2365 1.229428 CACATGCGTGAGAGTGGTTT 58.771 50.000 14.17 0.00 46.80 3.27
2283 2366 1.603802 CACATGCGTGAGAGTGGTTTT 59.396 47.619 14.17 0.00 46.80 2.43
2284 2367 1.873591 ACATGCGTGAGAGTGGTTTTC 59.126 47.619 14.17 0.00 0.00 2.29
2285 2368 1.197721 CATGCGTGAGAGTGGTTTTCC 59.802 52.381 0.00 0.00 41.14 3.13
2286 2369 0.468226 TGCGTGAGAGTGGTTTTCCT 59.532 50.000 0.00 0.00 41.38 3.36
2287 2370 1.134220 TGCGTGAGAGTGGTTTTCCTT 60.134 47.619 0.00 0.00 41.38 3.36
2288 2371 1.947456 GCGTGAGAGTGGTTTTCCTTT 59.053 47.619 0.00 0.00 41.38 3.11
2289 2372 2.287009 GCGTGAGAGTGGTTTTCCTTTG 60.287 50.000 0.00 0.00 41.38 2.77
2290 2373 2.943033 CGTGAGAGTGGTTTTCCTTTGT 59.057 45.455 0.00 0.00 41.38 2.83
2291 2374 3.377172 CGTGAGAGTGGTTTTCCTTTGTT 59.623 43.478 0.00 0.00 41.38 2.83
2292 2375 4.142469 CGTGAGAGTGGTTTTCCTTTGTTT 60.142 41.667 0.00 0.00 41.38 2.83
2293 2376 5.621329 CGTGAGAGTGGTTTTCCTTTGTTTT 60.621 40.000 0.00 0.00 41.38 2.43
2294 2377 5.576774 GTGAGAGTGGTTTTCCTTTGTTTTG 59.423 40.000 0.00 0.00 41.38 2.44
2295 2378 4.503910 AGAGTGGTTTTCCTTTGTTTTGC 58.496 39.130 0.00 0.00 41.38 3.68
2296 2379 4.020662 AGAGTGGTTTTCCTTTGTTTTGCA 60.021 37.500 0.00 0.00 41.38 4.08
2297 2380 4.000325 AGTGGTTTTCCTTTGTTTTGCAC 59.000 39.130 0.00 0.00 41.38 4.57
2298 2381 4.000325 GTGGTTTTCCTTTGTTTTGCACT 59.000 39.130 0.00 0.00 41.38 4.40
2299 2382 4.454161 GTGGTTTTCCTTTGTTTTGCACTT 59.546 37.500 0.00 0.00 41.38 3.16
2300 2383 5.639931 GTGGTTTTCCTTTGTTTTGCACTTA 59.360 36.000 0.00 0.00 41.38 2.24
2301 2384 6.147985 GTGGTTTTCCTTTGTTTTGCACTTAA 59.852 34.615 0.00 0.00 41.38 1.85
2302 2385 6.710744 TGGTTTTCCTTTGTTTTGCACTTAAA 59.289 30.769 0.00 0.00 41.38 1.52
2303 2386 7.391833 TGGTTTTCCTTTGTTTTGCACTTAAAT 59.608 29.630 0.00 0.00 41.38 1.40
2304 2387 8.240682 GGTTTTCCTTTGTTTTGCACTTAAATT 58.759 29.630 0.00 0.00 36.94 1.82
2305 2388 9.619316 GTTTTCCTTTGTTTTGCACTTAAATTT 57.381 25.926 0.00 0.00 0.00 1.82
2307 2390 9.617975 TTTCCTTTGTTTTGCACTTAAATTTTG 57.382 25.926 0.00 0.00 0.00 2.44
2308 2391 7.756558 TCCTTTGTTTTGCACTTAAATTTTGG 58.243 30.769 0.00 0.00 0.00 3.28
2309 2392 7.607991 TCCTTTGTTTTGCACTTAAATTTTGGA 59.392 29.630 0.00 0.00 0.00 3.53
2310 2393 7.909641 CCTTTGTTTTGCACTTAAATTTTGGAG 59.090 33.333 0.00 0.00 0.00 3.86
2311 2394 6.917217 TGTTTTGCACTTAAATTTTGGAGG 57.083 33.333 0.00 0.00 0.00 4.30
2312 2395 5.819901 TGTTTTGCACTTAAATTTTGGAGGG 59.180 36.000 0.00 0.00 0.00 4.30
2313 2396 5.622346 TTTGCACTTAAATTTTGGAGGGT 57.378 34.783 0.00 0.00 0.00 4.34
2314 2397 5.622346 TTGCACTTAAATTTTGGAGGGTT 57.378 34.783 0.00 0.00 0.00 4.11
2315 2398 4.954875 TGCACTTAAATTTTGGAGGGTTG 58.045 39.130 0.00 0.00 0.00 3.77
2316 2399 4.202305 TGCACTTAAATTTTGGAGGGTTGG 60.202 41.667 0.00 0.00 0.00 3.77
2317 2400 4.039852 GCACTTAAATTTTGGAGGGTTGGA 59.960 41.667 0.00 0.00 0.00 3.53
2318 2401 5.454045 GCACTTAAATTTTGGAGGGTTGGAA 60.454 40.000 0.00 0.00 0.00 3.53
2319 2402 6.223120 CACTTAAATTTTGGAGGGTTGGAAG 58.777 40.000 0.00 0.00 0.00 3.46
2320 2403 5.306937 ACTTAAATTTTGGAGGGTTGGAAGG 59.693 40.000 0.00 0.00 0.00 3.46
2321 2404 3.344535 AATTTTGGAGGGTTGGAAGGT 57.655 42.857 0.00 0.00 0.00 3.50
2322 2405 2.858787 TTTTGGAGGGTTGGAAGGTT 57.141 45.000 0.00 0.00 0.00 3.50
2323 2406 2.080654 TTTGGAGGGTTGGAAGGTTG 57.919 50.000 0.00 0.00 0.00 3.77
2324 2407 1.227249 TTGGAGGGTTGGAAGGTTGA 58.773 50.000 0.00 0.00 0.00 3.18
2325 2408 1.227249 TGGAGGGTTGGAAGGTTGAA 58.773 50.000 0.00 0.00 0.00 2.69
2326 2409 1.571457 TGGAGGGTTGGAAGGTTGAAA 59.429 47.619 0.00 0.00 0.00 2.69
2327 2410 2.023888 TGGAGGGTTGGAAGGTTGAAAA 60.024 45.455 0.00 0.00 0.00 2.29
2328 2411 3.239449 GGAGGGTTGGAAGGTTGAAAAT 58.761 45.455 0.00 0.00 0.00 1.82
2329 2412 3.006859 GGAGGGTTGGAAGGTTGAAAATG 59.993 47.826 0.00 0.00 0.00 2.32
2330 2413 3.641436 GAGGGTTGGAAGGTTGAAAATGT 59.359 43.478 0.00 0.00 0.00 2.71
2331 2414 4.810345 AGGGTTGGAAGGTTGAAAATGTA 58.190 39.130 0.00 0.00 0.00 2.29
2332 2415 5.402630 AGGGTTGGAAGGTTGAAAATGTAT 58.597 37.500 0.00 0.00 0.00 2.29
2333 2416 5.245977 AGGGTTGGAAGGTTGAAAATGTATG 59.754 40.000 0.00 0.00 0.00 2.39
2334 2417 5.011635 GGGTTGGAAGGTTGAAAATGTATGT 59.988 40.000 0.00 0.00 0.00 2.29
2335 2418 6.463755 GGGTTGGAAGGTTGAAAATGTATGTT 60.464 38.462 0.00 0.00 0.00 2.71
2336 2419 7.256012 GGGTTGGAAGGTTGAAAATGTATGTTA 60.256 37.037 0.00 0.00 0.00 2.41
2337 2420 8.145122 GGTTGGAAGGTTGAAAATGTATGTTAA 58.855 33.333 0.00 0.00 0.00 2.01
2338 2421 9.535878 GTTGGAAGGTTGAAAATGTATGTTAAA 57.464 29.630 0.00 0.00 0.00 1.52
2339 2422 9.535878 TTGGAAGGTTGAAAATGTATGTTAAAC 57.464 29.630 0.00 0.00 0.00 2.01
2340 2423 8.919145 TGGAAGGTTGAAAATGTATGTTAAACT 58.081 29.630 0.00 0.00 0.00 2.66
2364 2447 9.823647 ACTAATACATGATTTTAGTCAGAGTGG 57.176 33.333 0.00 0.00 32.16 4.00
2365 2448 7.559590 AATACATGATTTTAGTCAGAGTGGC 57.440 36.000 0.00 0.00 0.00 5.01
2366 2449 4.910195 ACATGATTTTAGTCAGAGTGGCA 58.090 39.130 0.00 0.00 0.00 4.92
2367 2450 4.697352 ACATGATTTTAGTCAGAGTGGCAC 59.303 41.667 10.29 10.29 0.00 5.01
2368 2451 4.623932 TGATTTTAGTCAGAGTGGCACT 57.376 40.909 22.26 22.26 0.00 4.40
2369 2452 4.973168 TGATTTTAGTCAGAGTGGCACTT 58.027 39.130 22.98 7.87 0.00 3.16
2370 2453 4.756642 TGATTTTAGTCAGAGTGGCACTTG 59.243 41.667 22.98 19.88 0.00 3.16
2371 2454 2.839486 TTAGTCAGAGTGGCACTTGG 57.161 50.000 22.98 16.54 0.00 3.61
2372 2455 1.717032 TAGTCAGAGTGGCACTTGGT 58.283 50.000 22.98 13.80 0.00 3.67
2373 2456 0.839946 AGTCAGAGTGGCACTTGGTT 59.160 50.000 22.98 5.37 0.00 3.67
2374 2457 1.212935 AGTCAGAGTGGCACTTGGTTT 59.787 47.619 22.98 5.37 0.00 3.27
2375 2458 2.438021 AGTCAGAGTGGCACTTGGTTTA 59.562 45.455 22.98 1.89 0.00 2.01
2376 2459 2.808543 GTCAGAGTGGCACTTGGTTTAG 59.191 50.000 22.98 7.02 0.00 1.85
2377 2460 2.154462 CAGAGTGGCACTTGGTTTAGG 58.846 52.381 22.98 1.88 0.00 2.69
2378 2461 1.073923 AGAGTGGCACTTGGTTTAGGG 59.926 52.381 22.98 0.00 0.00 3.53
2379 2462 0.850784 AGTGGCACTTGGTTTAGGGT 59.149 50.000 15.88 0.00 0.00 4.34
2380 2463 1.216930 AGTGGCACTTGGTTTAGGGTT 59.783 47.619 15.88 0.00 0.00 4.11
2381 2464 2.444010 AGTGGCACTTGGTTTAGGGTTA 59.556 45.455 15.88 0.00 0.00 2.85
2382 2465 2.817844 GTGGCACTTGGTTTAGGGTTAG 59.182 50.000 11.13 0.00 0.00 2.34
2383 2466 2.712087 TGGCACTTGGTTTAGGGTTAGA 59.288 45.455 0.00 0.00 0.00 2.10
2384 2467 3.244770 TGGCACTTGGTTTAGGGTTAGAG 60.245 47.826 0.00 0.00 0.00 2.43
2385 2468 3.244805 GGCACTTGGTTTAGGGTTAGAGT 60.245 47.826 0.00 0.00 0.00 3.24
2386 2469 3.751698 GCACTTGGTTTAGGGTTAGAGTG 59.248 47.826 0.00 0.00 37.05 3.51
2387 2470 4.324267 CACTTGGTTTAGGGTTAGAGTGG 58.676 47.826 0.00 0.00 31.96 4.00
2388 2471 3.244805 ACTTGGTTTAGGGTTAGAGTGGC 60.245 47.826 0.00 0.00 0.00 5.01
2389 2472 2.340731 TGGTTTAGGGTTAGAGTGGCA 58.659 47.619 0.00 0.00 0.00 4.92
2390 2473 2.039348 TGGTTTAGGGTTAGAGTGGCAC 59.961 50.000 10.29 10.29 0.00 5.01
2391 2474 2.305052 GGTTTAGGGTTAGAGTGGCACT 59.695 50.000 22.26 22.26 0.00 4.40
2392 2475 3.244805 GGTTTAGGGTTAGAGTGGCACTT 60.245 47.826 22.98 13.79 0.00 3.16
2393 2476 3.695830 TTAGGGTTAGAGTGGCACTTG 57.304 47.619 22.98 0.00 0.00 3.16
2394 2477 0.693049 AGGGTTAGAGTGGCACTTGG 59.307 55.000 22.98 0.00 0.00 3.61
2395 2478 0.400594 GGGTTAGAGTGGCACTTGGT 59.599 55.000 22.98 12.09 0.00 3.67
2396 2479 1.202891 GGGTTAGAGTGGCACTTGGTT 60.203 52.381 22.98 10.45 0.00 3.67
2397 2480 2.583143 GGTTAGAGTGGCACTTGGTTT 58.417 47.619 22.98 8.03 0.00 3.27
2398 2481 3.497227 GGGTTAGAGTGGCACTTGGTTTA 60.497 47.826 22.98 7.07 0.00 2.01
2399 2482 3.751698 GGTTAGAGTGGCACTTGGTTTAG 59.248 47.826 22.98 0.00 0.00 1.85
2400 2483 2.568623 AGAGTGGCACTTGGTTTAGG 57.431 50.000 22.98 0.00 0.00 2.69
2401 2484 2.054799 AGAGTGGCACTTGGTTTAGGA 58.945 47.619 22.98 0.00 0.00 2.94
2402 2485 2.644798 AGAGTGGCACTTGGTTTAGGAT 59.355 45.455 22.98 0.00 0.00 3.24
2403 2486 3.074538 AGAGTGGCACTTGGTTTAGGATT 59.925 43.478 22.98 0.00 0.00 3.01
2404 2487 3.826729 GAGTGGCACTTGGTTTAGGATTT 59.173 43.478 22.98 0.00 0.00 2.17
2405 2488 4.993028 AGTGGCACTTGGTTTAGGATTTA 58.007 39.130 15.88 0.00 0.00 1.40
2406 2489 5.390387 AGTGGCACTTGGTTTAGGATTTAA 58.610 37.500 15.88 0.00 0.00 1.52
2407 2490 5.836358 AGTGGCACTTGGTTTAGGATTTAAA 59.164 36.000 15.88 0.00 0.00 1.52
2408 2491 6.015434 AGTGGCACTTGGTTTAGGATTTAAAG 60.015 38.462 15.88 0.00 0.00 1.85
2409 2492 5.245075 TGGCACTTGGTTTAGGATTTAAAGG 59.755 40.000 0.00 0.00 0.00 3.11
2410 2493 5.337250 GGCACTTGGTTTAGGATTTAAAGGG 60.337 44.000 0.00 0.00 0.00 3.95
2411 2494 5.479027 GCACTTGGTTTAGGATTTAAAGGGA 59.521 40.000 0.00 0.00 0.00 4.20
2412 2495 6.014925 GCACTTGGTTTAGGATTTAAAGGGAA 60.015 38.462 0.00 0.00 0.00 3.97
2413 2496 7.310423 GCACTTGGTTTAGGATTTAAAGGGAAT 60.310 37.037 0.00 0.00 0.00 3.01
2414 2497 9.250246 CACTTGGTTTAGGATTTAAAGGGAATA 57.750 33.333 0.00 0.00 0.00 1.75
2415 2498 9.831682 ACTTGGTTTAGGATTTAAAGGGAATAA 57.168 29.630 0.00 0.00 0.00 1.40
2424 2507 9.617523 AGGATTTAAAGGGAATAAATTTGCATG 57.382 29.630 0.00 0.00 34.09 4.06
2425 2508 9.394767 GGATTTAAAGGGAATAAATTTGCATGT 57.605 29.630 0.00 0.00 34.09 3.21
2431 2514 9.435688 AAAGGGAATAAATTTGCATGTTAGTTC 57.564 29.630 0.00 0.00 0.00 3.01
2432 2515 8.133024 AGGGAATAAATTTGCATGTTAGTTCA 57.867 30.769 0.00 0.00 0.00 3.18
2433 2516 8.761689 AGGGAATAAATTTGCATGTTAGTTCAT 58.238 29.630 0.00 0.00 0.00 2.57
2434 2517 8.819974 GGGAATAAATTTGCATGTTAGTTCATG 58.180 33.333 0.00 2.78 45.37 3.07
2435 2518 9.585099 GGAATAAATTTGCATGTTAGTTCATGA 57.415 29.630 10.28 0.00 45.41 3.07
2439 2522 8.891671 AAATTTGCATGTTAGTTCATGACTTT 57.108 26.923 10.28 0.00 45.41 2.66
2440 2523 8.891671 AATTTGCATGTTAGTTCATGACTTTT 57.108 26.923 10.28 0.00 45.41 2.27
2441 2524 8.891671 ATTTGCATGTTAGTTCATGACTTTTT 57.108 26.923 10.28 0.00 45.41 1.94
2442 2525 7.697352 TTGCATGTTAGTTCATGACTTTTTG 57.303 32.000 10.28 0.00 45.41 2.44
2443 2526 6.804677 TGCATGTTAGTTCATGACTTTTTGT 58.195 32.000 10.28 0.00 45.41 2.83
2444 2527 7.264221 TGCATGTTAGTTCATGACTTTTTGTT 58.736 30.769 10.28 0.00 45.41 2.83
2445 2528 7.763528 TGCATGTTAGTTCATGACTTTTTGTTT 59.236 29.630 10.28 0.00 45.41 2.83
2446 2529 8.057742 GCATGTTAGTTCATGACTTTTTGTTTG 58.942 33.333 10.28 0.00 45.41 2.93
2447 2530 9.299963 CATGTTAGTTCATGACTTTTTGTTTGA 57.700 29.630 0.00 0.00 45.41 2.69
2448 2531 9.868277 ATGTTAGTTCATGACTTTTTGTTTGAA 57.132 25.926 0.00 0.00 39.86 2.69
2449 2532 9.868277 TGTTAGTTCATGACTTTTTGTTTGAAT 57.132 25.926 0.00 0.00 39.86 2.57
2453 2536 9.434420 AGTTCATGACTTTTTGTTTGAATGAAA 57.566 25.926 0.00 0.00 33.92 2.69
2454 2537 9.476761 GTTCATGACTTTTTGTTTGAATGAAAC 57.523 29.630 0.00 0.00 43.84 2.78
2463 2546 4.590850 GTTTGAATGAAACAGAGGGCTT 57.409 40.909 0.00 0.00 43.16 4.35
2464 2547 4.550422 GTTTGAATGAAACAGAGGGCTTC 58.450 43.478 0.00 0.00 43.16 3.86
2465 2548 3.795688 TGAATGAAACAGAGGGCTTCT 57.204 42.857 0.00 0.00 36.25 2.85
2466 2549 3.679389 TGAATGAAACAGAGGGCTTCTC 58.321 45.455 0.00 0.00 42.75 2.87
2467 2550 3.072915 TGAATGAAACAGAGGGCTTCTCA 59.927 43.478 0.00 0.00 44.81 3.27
2468 2551 2.550830 TGAAACAGAGGGCTTCTCAC 57.449 50.000 0.00 0.00 44.81 3.51
2469 2552 1.072331 TGAAACAGAGGGCTTCTCACC 59.928 52.381 0.00 0.00 44.81 4.02
2475 2558 3.412408 GGGCTTCTCACCCCCTCC 61.412 72.222 0.00 0.00 42.01 4.30
2476 2559 2.610859 GGCTTCTCACCCCCTCCA 60.611 66.667 0.00 0.00 0.00 3.86
2477 2560 2.231380 GGCTTCTCACCCCCTCCAA 61.231 63.158 0.00 0.00 0.00 3.53
2478 2561 1.575447 GGCTTCTCACCCCCTCCAAT 61.575 60.000 0.00 0.00 0.00 3.16
2479 2562 0.332972 GCTTCTCACCCCCTCCAATT 59.667 55.000 0.00 0.00 0.00 2.32
2480 2563 1.272704 GCTTCTCACCCCCTCCAATTT 60.273 52.381 0.00 0.00 0.00 1.82
2481 2564 2.823152 GCTTCTCACCCCCTCCAATTTT 60.823 50.000 0.00 0.00 0.00 1.82
2482 2565 2.899303 TCTCACCCCCTCCAATTTTC 57.101 50.000 0.00 0.00 0.00 2.29
2483 2566 2.069775 TCTCACCCCCTCCAATTTTCA 58.930 47.619 0.00 0.00 0.00 2.69
2484 2567 2.654385 TCTCACCCCCTCCAATTTTCAT 59.346 45.455 0.00 0.00 0.00 2.57
2485 2568 3.077391 TCTCACCCCCTCCAATTTTCATT 59.923 43.478 0.00 0.00 0.00 2.57
2486 2569 4.293634 TCTCACCCCCTCCAATTTTCATTA 59.706 41.667 0.00 0.00 0.00 1.90
2487 2570 5.017093 TCACCCCCTCCAATTTTCATTAA 57.983 39.130 0.00 0.00 0.00 1.40
2488 2571 5.598754 TCACCCCCTCCAATTTTCATTAAT 58.401 37.500 0.00 0.00 0.00 1.40
2489 2572 5.424895 TCACCCCCTCCAATTTTCATTAATG 59.575 40.000 9.29 9.29 0.00 1.90
2490 2573 5.424895 CACCCCCTCCAATTTTCATTAATGA 59.575 40.000 14.23 14.23 34.44 2.57
2491 2574 6.028780 ACCCCCTCCAATTTTCATTAATGAA 58.971 36.000 23.86 23.86 44.42 2.57
2506 2589 7.359595 TCATTAATGAAAACCACAAGTTCTCG 58.640 34.615 15.82 0.00 37.88 4.04
2507 2590 6.928979 TTAATGAAAACCACAAGTTCTCGA 57.071 33.333 0.00 0.00 37.88 4.04
2508 2591 5.828299 AATGAAAACCACAAGTTCTCGAA 57.172 34.783 0.00 0.00 37.88 3.71
2509 2592 4.609691 TGAAAACCACAAGTTCTCGAAC 57.390 40.909 1.62 1.62 37.88 3.95
2522 2605 5.659048 GTTCTCGAACTTCATGACTTGTT 57.341 39.130 0.00 0.97 38.25 2.83
2523 2606 6.049263 GTTCTCGAACTTCATGACTTGTTT 57.951 37.500 0.00 0.00 38.25 2.83
2524 2607 7.173863 GTTCTCGAACTTCATGACTTGTTTA 57.826 36.000 0.00 0.00 38.25 2.01
2525 2608 7.284351 GTTCTCGAACTTCATGACTTGTTTAG 58.716 38.462 0.00 4.20 38.25 1.85
2526 2609 5.926542 TCTCGAACTTCATGACTTGTTTAGG 59.073 40.000 0.00 0.00 0.00 2.69
2527 2610 4.994852 TCGAACTTCATGACTTGTTTAGGG 59.005 41.667 0.00 0.00 0.00 3.53
2528 2611 4.994852 CGAACTTCATGACTTGTTTAGGGA 59.005 41.667 0.00 0.00 0.00 4.20
2529 2612 5.468746 CGAACTTCATGACTTGTTTAGGGAA 59.531 40.000 0.00 0.00 0.00 3.97
2530 2613 6.347725 CGAACTTCATGACTTGTTTAGGGAAG 60.348 42.308 0.00 0.00 37.21 3.46
2531 2614 6.187727 ACTTCATGACTTGTTTAGGGAAGA 57.812 37.500 0.00 0.00 35.64 2.87
2532 2615 6.601332 ACTTCATGACTTGTTTAGGGAAGAA 58.399 36.000 0.00 0.00 35.64 2.52
2533 2616 7.060421 ACTTCATGACTTGTTTAGGGAAGAAA 58.940 34.615 0.00 0.00 35.64 2.52
2534 2617 7.725844 ACTTCATGACTTGTTTAGGGAAGAAAT 59.274 33.333 0.00 0.00 35.64 2.17
2535 2618 7.452880 TCATGACTTGTTTAGGGAAGAAATG 57.547 36.000 0.00 0.00 0.00 2.32
2536 2619 7.230747 TCATGACTTGTTTAGGGAAGAAATGA 58.769 34.615 0.00 0.00 0.00 2.57
2537 2620 7.890127 TCATGACTTGTTTAGGGAAGAAATGAT 59.110 33.333 0.00 0.00 0.00 2.45
2538 2621 9.177608 CATGACTTGTTTAGGGAAGAAATGATA 57.822 33.333 0.00 0.00 0.00 2.15
2539 2622 9.927081 ATGACTTGTTTAGGGAAGAAATGATAT 57.073 29.630 0.00 0.00 0.00 1.63
2540 2623 9.177608 TGACTTGTTTAGGGAAGAAATGATATG 57.822 33.333 0.00 0.00 0.00 1.78
2541 2624 9.178758 GACTTGTTTAGGGAAGAAATGATATGT 57.821 33.333 0.00 0.00 0.00 2.29
2542 2625 9.533831 ACTTGTTTAGGGAAGAAATGATATGTT 57.466 29.630 0.00 0.00 0.00 2.71
2545 2628 8.748412 TGTTTAGGGAAGAAATGATATGTTTGG 58.252 33.333 0.00 0.00 0.00 3.28
2546 2629 7.896383 TTAGGGAAGAAATGATATGTTTGGG 57.104 36.000 0.00 0.00 0.00 4.12
2547 2630 4.651045 AGGGAAGAAATGATATGTTTGGGC 59.349 41.667 0.00 0.00 0.00 5.36
2548 2631 4.405358 GGGAAGAAATGATATGTTTGGGCA 59.595 41.667 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 141 7.012704 TCAGCTCCTTTTCTGTTAATGATATGC 59.987 37.037 0.00 0.00 0.00 3.14
150 151 3.481453 GGTTCTCAGCTCCTTTTCTGTT 58.519 45.455 0.00 0.00 0.00 3.16
152 153 2.224621 TGGGTTCTCAGCTCCTTTTCTG 60.225 50.000 0.00 0.00 0.00 3.02
262 263 6.349611 CCAAGGAGTACCATGAGAAACATTTG 60.350 42.308 0.00 0.00 37.08 2.32
494 500 1.883678 TCTCCAGCATGATTCCCTCA 58.116 50.000 0.00 0.00 39.69 3.86
500 506 4.036027 CGCAGTTTTATCTCCAGCATGATT 59.964 41.667 0.00 0.00 39.69 2.57
516 522 2.752354 TGCAATACCTTATGCGCAGTTT 59.248 40.909 18.32 0.56 45.47 2.66
542 548 7.200434 TGAAGAGAGTAGGCCAATAAAATCT 57.800 36.000 5.01 0.00 0.00 2.40
724 730 3.139029 CTGTAAGGGCCGAGTCAAC 57.861 57.895 0.00 0.00 0.00 3.18
867 892 1.376424 CACCGCCATGCTCTCTGTT 60.376 57.895 0.00 0.00 0.00 3.16
1061 1117 1.371267 CGCGGACAGACGAAGACAA 60.371 57.895 0.00 0.00 35.47 3.18
1235 1291 0.877071 AAAGAAGCATGTCACCTGCG 59.123 50.000 0.00 0.00 44.38 5.18
1406 1463 5.620206 TCTTCAACATCCTAAGCTCAACAA 58.380 37.500 0.00 0.00 0.00 2.83
1508 1565 1.265635 TCAACATTACAACCAGTGCGC 59.734 47.619 0.00 0.00 0.00 6.09
1637 1694 7.873719 TTTAAATGTTGGTCACTTCTTCTCA 57.126 32.000 0.00 0.00 0.00 3.27
1743 1805 2.890945 GCCCAAGAGCAACCTTTTTCTA 59.109 45.455 0.00 0.00 0.00 2.10
1745 1808 1.270305 GGCCCAAGAGCAACCTTTTTC 60.270 52.381 0.00 0.00 0.00 2.29
1842 1906 9.959749 AGAATAGAAAACAGAAAAATACGCAAA 57.040 25.926 0.00 0.00 0.00 3.68
1899 1963 8.785329 TTCAATTAGCTTCCACAAAAAGTTTT 57.215 26.923 0.00 0.00 0.00 2.43
2091 2174 1.370810 CCCAGCCGCACCAATTTTT 59.629 52.632 0.00 0.00 0.00 1.94
2092 2175 2.582493 CCCCAGCCGCACCAATTTT 61.582 57.895 0.00 0.00 0.00 1.82
2093 2176 2.996734 CCCCAGCCGCACCAATTT 60.997 61.111 0.00 0.00 0.00 1.82
2094 2177 3.978193 TCCCCAGCCGCACCAATT 61.978 61.111 0.00 0.00 0.00 2.32
2095 2178 4.740822 GTCCCCAGCCGCACCAAT 62.741 66.667 0.00 0.00 0.00 3.16
2107 2190 2.284405 TCTTGGGTCCGAGTCCCC 60.284 66.667 4.32 0.00 44.00 4.81
2108 2191 2.657066 GGTCTTGGGTCCGAGTCCC 61.657 68.421 8.73 5.11 44.81 4.46
2109 2192 2.979649 GGTCTTGGGTCCGAGTCC 59.020 66.667 5.08 5.08 0.00 3.85
2125 2208 3.959975 CACCACAAACCCACGCGG 61.960 66.667 12.47 0.00 37.81 6.46
2126 2209 2.272918 AAACACCACAAACCCACGCG 62.273 55.000 3.53 3.53 0.00 6.01
2127 2210 0.739561 TAAACACCACAAACCCACGC 59.260 50.000 0.00 0.00 0.00 5.34
2128 2211 1.335496 CCTAAACACCACAAACCCACG 59.665 52.381 0.00 0.00 0.00 4.94
2129 2212 1.684450 CCCTAAACACCACAAACCCAC 59.316 52.381 0.00 0.00 0.00 4.61
2130 2213 2.030045 GCCCTAAACACCACAAACCCA 61.030 52.381 0.00 0.00 0.00 4.51
2131 2214 0.677288 GCCCTAAACACCACAAACCC 59.323 55.000 0.00 0.00 0.00 4.11
2132 2215 1.339929 CAGCCCTAAACACCACAAACC 59.660 52.381 0.00 0.00 0.00 3.27
2133 2216 1.269569 GCAGCCCTAAACACCACAAAC 60.270 52.381 0.00 0.00 0.00 2.93
2134 2217 1.036707 GCAGCCCTAAACACCACAAA 58.963 50.000 0.00 0.00 0.00 2.83
2135 2218 1.169661 CGCAGCCCTAAACACCACAA 61.170 55.000 0.00 0.00 0.00 3.33
2136 2219 1.599518 CGCAGCCCTAAACACCACA 60.600 57.895 0.00 0.00 0.00 4.17
2137 2220 3.263941 CGCAGCCCTAAACACCAC 58.736 61.111 0.00 0.00 0.00 4.16
2150 2233 0.807667 CCTAGCAGTTACCAGCGCAG 60.808 60.000 11.47 0.00 35.48 5.18
2151 2234 1.218047 CCTAGCAGTTACCAGCGCA 59.782 57.895 11.47 0.00 35.48 6.09
2152 2235 0.806492 GTCCTAGCAGTTACCAGCGC 60.806 60.000 0.00 0.00 35.48 5.92
2153 2236 0.530744 TGTCCTAGCAGTTACCAGCG 59.469 55.000 0.00 0.00 35.48 5.18
2154 2237 1.825474 TCTGTCCTAGCAGTTACCAGC 59.175 52.381 0.00 0.00 37.70 4.85
2155 2238 3.181471 CCATCTGTCCTAGCAGTTACCAG 60.181 52.174 0.00 0.00 37.70 4.00
2156 2239 2.766263 CCATCTGTCCTAGCAGTTACCA 59.234 50.000 0.00 0.00 37.70 3.25
2157 2240 2.483889 GCCATCTGTCCTAGCAGTTACC 60.484 54.545 0.00 0.00 37.70 2.85
2158 2241 2.168521 TGCCATCTGTCCTAGCAGTTAC 59.831 50.000 0.00 0.00 37.70 2.50
2159 2242 2.466846 TGCCATCTGTCCTAGCAGTTA 58.533 47.619 0.00 0.00 37.70 2.24
2160 2243 1.279496 TGCCATCTGTCCTAGCAGTT 58.721 50.000 0.00 0.00 37.70 3.16
2161 2244 1.209019 CTTGCCATCTGTCCTAGCAGT 59.791 52.381 0.00 0.00 37.70 4.40
2162 2245 1.483827 TCTTGCCATCTGTCCTAGCAG 59.516 52.381 0.00 0.00 34.45 4.24
2163 2246 1.208052 GTCTTGCCATCTGTCCTAGCA 59.792 52.381 0.00 0.00 0.00 3.49
2164 2247 1.484240 AGTCTTGCCATCTGTCCTAGC 59.516 52.381 0.00 0.00 0.00 3.42
2165 2248 3.902881 AAGTCTTGCCATCTGTCCTAG 57.097 47.619 0.00 0.00 0.00 3.02
2166 2249 3.582647 TCAAAGTCTTGCCATCTGTCCTA 59.417 43.478 0.00 0.00 32.14 2.94
2167 2250 2.373169 TCAAAGTCTTGCCATCTGTCCT 59.627 45.455 0.00 0.00 32.14 3.85
2168 2251 2.485814 GTCAAAGTCTTGCCATCTGTCC 59.514 50.000 0.00 0.00 32.14 4.02
2169 2252 3.141398 TGTCAAAGTCTTGCCATCTGTC 58.859 45.455 0.00 0.00 32.14 3.51
2170 2253 3.213206 TGTCAAAGTCTTGCCATCTGT 57.787 42.857 0.00 0.00 32.14 3.41
2171 2254 3.119602 CCATGTCAAAGTCTTGCCATCTG 60.120 47.826 0.00 0.00 28.75 2.90
2172 2255 3.087031 CCATGTCAAAGTCTTGCCATCT 58.913 45.455 0.00 0.00 28.75 2.90
2173 2256 2.165030 CCCATGTCAAAGTCTTGCCATC 59.835 50.000 0.00 0.00 28.75 3.51
2174 2257 2.173519 CCCATGTCAAAGTCTTGCCAT 58.826 47.619 0.00 0.00 31.37 4.40
2175 2258 1.133513 ACCCATGTCAAAGTCTTGCCA 60.134 47.619 0.00 0.00 32.14 4.92
2176 2259 1.620822 ACCCATGTCAAAGTCTTGCC 58.379 50.000 0.00 0.00 32.14 4.52
2177 2260 2.749621 CCTACCCATGTCAAAGTCTTGC 59.250 50.000 0.00 0.00 32.14 4.01
2178 2261 3.009033 TCCCTACCCATGTCAAAGTCTTG 59.991 47.826 0.00 0.00 0.00 3.02
2179 2262 3.256704 TCCCTACCCATGTCAAAGTCTT 58.743 45.455 0.00 0.00 0.00 3.01
2180 2263 2.915869 TCCCTACCCATGTCAAAGTCT 58.084 47.619 0.00 0.00 0.00 3.24
2181 2264 3.610911 CTTCCCTACCCATGTCAAAGTC 58.389 50.000 0.00 0.00 0.00 3.01
2182 2265 2.308866 CCTTCCCTACCCATGTCAAAGT 59.691 50.000 0.00 0.00 0.00 2.66
2183 2266 2.576191 TCCTTCCCTACCCATGTCAAAG 59.424 50.000 0.00 0.00 0.00 2.77
2184 2267 2.638325 TCCTTCCCTACCCATGTCAAA 58.362 47.619 0.00 0.00 0.00 2.69
2185 2268 2.352561 TCCTTCCCTACCCATGTCAA 57.647 50.000 0.00 0.00 0.00 3.18
2186 2269 2.196595 CTTCCTTCCCTACCCATGTCA 58.803 52.381 0.00 0.00 0.00 3.58
2187 2270 1.490910 CCTTCCTTCCCTACCCATGTC 59.509 57.143 0.00 0.00 0.00 3.06
2188 2271 1.203570 ACCTTCCTTCCCTACCCATGT 60.204 52.381 0.00 0.00 0.00 3.21
2189 2272 1.596496 ACCTTCCTTCCCTACCCATG 58.404 55.000 0.00 0.00 0.00 3.66
2190 2273 3.745678 ATACCTTCCTTCCCTACCCAT 57.254 47.619 0.00 0.00 0.00 4.00
2191 2274 3.275497 TGTATACCTTCCTTCCCTACCCA 59.725 47.826 0.00 0.00 0.00 4.51
2192 2275 3.932601 TGTATACCTTCCTTCCCTACCC 58.067 50.000 0.00 0.00 0.00 3.69
2193 2276 6.210984 CACTATGTATACCTTCCTTCCCTACC 59.789 46.154 0.00 0.00 0.00 3.18
2194 2277 7.008941 TCACTATGTATACCTTCCTTCCCTAC 58.991 42.308 0.00 0.00 0.00 3.18
2195 2278 7.074623 TCTCACTATGTATACCTTCCTTCCCTA 59.925 40.741 0.00 0.00 0.00 3.53
2196 2279 6.039415 TCACTATGTATACCTTCCTTCCCT 57.961 41.667 0.00 0.00 0.00 4.20
2197 2280 6.015265 GTCTCACTATGTATACCTTCCTTCCC 60.015 46.154 0.00 0.00 0.00 3.97
2198 2281 6.778559 AGTCTCACTATGTATACCTTCCTTCC 59.221 42.308 0.00 0.00 0.00 3.46
2199 2282 7.285858 ACAGTCTCACTATGTATACCTTCCTTC 59.714 40.741 0.00 0.00 0.00 3.46
2200 2283 7.068839 CACAGTCTCACTATGTATACCTTCCTT 59.931 40.741 0.00 0.00 0.00 3.36
2201 2284 6.547880 CACAGTCTCACTATGTATACCTTCCT 59.452 42.308 0.00 0.00 0.00 3.36
2202 2285 6.546403 TCACAGTCTCACTATGTATACCTTCC 59.454 42.308 0.00 0.00 0.00 3.46
2203 2286 7.569639 TCACAGTCTCACTATGTATACCTTC 57.430 40.000 0.00 0.00 0.00 3.46
2204 2287 7.956328 TTCACAGTCTCACTATGTATACCTT 57.044 36.000 0.00 0.00 0.00 3.50
2205 2288 8.540507 AATTCACAGTCTCACTATGTATACCT 57.459 34.615 0.00 0.00 0.00 3.08
2206 2289 9.601217 AAAATTCACAGTCTCACTATGTATACC 57.399 33.333 0.00 0.00 0.00 2.73
2237 2320 6.877611 AACATTCACGGTCTCACTATTTTT 57.122 33.333 0.00 0.00 0.00 1.94
2238 2321 6.668323 CAAACATTCACGGTCTCACTATTTT 58.332 36.000 0.00 0.00 0.00 1.82
2239 2322 5.334879 GCAAACATTCACGGTCTCACTATTT 60.335 40.000 0.00 0.00 0.00 1.40
2240 2323 4.154195 GCAAACATTCACGGTCTCACTATT 59.846 41.667 0.00 0.00 0.00 1.73
2241 2324 3.684788 GCAAACATTCACGGTCTCACTAT 59.315 43.478 0.00 0.00 0.00 2.12
2242 2325 3.064207 GCAAACATTCACGGTCTCACTA 58.936 45.455 0.00 0.00 0.00 2.74
2243 2326 1.873591 GCAAACATTCACGGTCTCACT 59.126 47.619 0.00 0.00 0.00 3.41
2244 2327 1.601903 TGCAAACATTCACGGTCTCAC 59.398 47.619 0.00 0.00 0.00 3.51
2245 2328 1.601903 GTGCAAACATTCACGGTCTCA 59.398 47.619 0.00 0.00 0.00 3.27
2246 2329 1.601903 TGTGCAAACATTCACGGTCTC 59.398 47.619 0.00 0.00 36.06 3.36
2247 2330 1.674359 TGTGCAAACATTCACGGTCT 58.326 45.000 0.00 0.00 36.06 3.85
2248 2331 2.318578 CATGTGCAAACATTCACGGTC 58.681 47.619 0.00 0.00 36.06 4.79
2249 2332 1.602668 GCATGTGCAAACATTCACGGT 60.603 47.619 0.00 0.00 41.59 4.83
2250 2333 1.062258 GCATGTGCAAACATTCACGG 58.938 50.000 0.00 0.00 41.59 4.94
2251 2334 0.704008 CGCATGTGCAAACATTCACG 59.296 50.000 5.77 0.00 42.21 4.35
2252 2335 1.452773 CACGCATGTGCAAACATTCAC 59.547 47.619 6.08 0.00 39.67 3.18
2253 2336 1.336125 TCACGCATGTGCAAACATTCA 59.664 42.857 6.08 0.00 46.01 2.57
2254 2337 1.980844 CTCACGCATGTGCAAACATTC 59.019 47.619 6.08 0.00 46.01 2.67
2255 2338 1.608109 TCTCACGCATGTGCAAACATT 59.392 42.857 6.08 0.00 46.01 2.71
2256 2339 1.198408 CTCTCACGCATGTGCAAACAT 59.802 47.619 6.08 0.00 46.01 2.71
2257 2340 0.587768 CTCTCACGCATGTGCAAACA 59.412 50.000 6.08 0.00 46.01 2.83
2258 2341 0.588252 ACTCTCACGCATGTGCAAAC 59.412 50.000 6.08 0.00 46.01 2.93
2259 2342 0.587768 CACTCTCACGCATGTGCAAA 59.412 50.000 6.08 0.00 46.01 3.68
2260 2343 1.229975 CCACTCTCACGCATGTGCAA 61.230 55.000 6.08 0.00 46.01 4.08
2261 2344 1.668793 CCACTCTCACGCATGTGCA 60.669 57.895 6.08 0.00 46.01 4.57
2262 2345 1.230635 AACCACTCTCACGCATGTGC 61.231 55.000 6.08 0.00 46.01 4.57
2264 2347 1.873591 GAAAACCACTCTCACGCATGT 59.126 47.619 0.00 0.00 0.00 3.21
2265 2348 1.197721 GGAAAACCACTCTCACGCATG 59.802 52.381 0.00 0.00 0.00 4.06
2266 2349 1.072331 AGGAAAACCACTCTCACGCAT 59.928 47.619 0.00 0.00 0.00 4.73
2267 2350 0.468226 AGGAAAACCACTCTCACGCA 59.532 50.000 0.00 0.00 0.00 5.24
2268 2351 1.594331 AAGGAAAACCACTCTCACGC 58.406 50.000 0.00 0.00 0.00 5.34
2269 2352 2.943033 ACAAAGGAAAACCACTCTCACG 59.057 45.455 0.00 0.00 0.00 4.35
2270 2353 4.983671 AACAAAGGAAAACCACTCTCAC 57.016 40.909 0.00 0.00 0.00 3.51
2271 2354 5.719173 CAAAACAAAGGAAAACCACTCTCA 58.281 37.500 0.00 0.00 0.00 3.27
2272 2355 4.566759 GCAAAACAAAGGAAAACCACTCTC 59.433 41.667 0.00 0.00 0.00 3.20
2273 2356 4.020662 TGCAAAACAAAGGAAAACCACTCT 60.021 37.500 0.00 0.00 0.00 3.24
2274 2357 4.092821 GTGCAAAACAAAGGAAAACCACTC 59.907 41.667 0.00 0.00 0.00 3.51
2275 2358 4.000325 GTGCAAAACAAAGGAAAACCACT 59.000 39.130 0.00 0.00 0.00 4.00
2276 2359 4.000325 AGTGCAAAACAAAGGAAAACCAC 59.000 39.130 0.00 0.00 0.00 4.16
2277 2360 4.278975 AGTGCAAAACAAAGGAAAACCA 57.721 36.364 0.00 0.00 0.00 3.67
2278 2361 6.729391 TTAAGTGCAAAACAAAGGAAAACC 57.271 33.333 0.00 0.00 0.00 3.27
2279 2362 9.619316 AAATTTAAGTGCAAAACAAAGGAAAAC 57.381 25.926 0.00 0.00 0.00 2.43
2281 2364 9.617975 CAAAATTTAAGTGCAAAACAAAGGAAA 57.382 25.926 0.00 0.00 0.00 3.13
2282 2365 8.239998 CCAAAATTTAAGTGCAAAACAAAGGAA 58.760 29.630 0.00 0.00 0.00 3.36
2283 2366 7.607991 TCCAAAATTTAAGTGCAAAACAAAGGA 59.392 29.630 0.00 0.00 0.00 3.36
2284 2367 7.756558 TCCAAAATTTAAGTGCAAAACAAAGG 58.243 30.769 0.00 0.00 0.00 3.11
2285 2368 7.909641 CCTCCAAAATTTAAGTGCAAAACAAAG 59.090 33.333 0.00 0.00 0.00 2.77
2286 2369 7.148171 CCCTCCAAAATTTAAGTGCAAAACAAA 60.148 33.333 0.00 0.00 0.00 2.83
2287 2370 6.317391 CCCTCCAAAATTTAAGTGCAAAACAA 59.683 34.615 0.00 0.00 0.00 2.83
2288 2371 5.819901 CCCTCCAAAATTTAAGTGCAAAACA 59.180 36.000 0.00 0.00 0.00 2.83
2289 2372 5.820423 ACCCTCCAAAATTTAAGTGCAAAAC 59.180 36.000 0.00 0.00 0.00 2.43
2290 2373 5.995446 ACCCTCCAAAATTTAAGTGCAAAA 58.005 33.333 0.00 0.00 0.00 2.44
2291 2374 5.622346 ACCCTCCAAAATTTAAGTGCAAA 57.378 34.783 0.00 0.00 0.00 3.68
2292 2375 5.363939 CAACCCTCCAAAATTTAAGTGCAA 58.636 37.500 0.00 0.00 0.00 4.08
2293 2376 4.202305 CCAACCCTCCAAAATTTAAGTGCA 60.202 41.667 0.00 0.00 0.00 4.57
2294 2377 4.039852 TCCAACCCTCCAAAATTTAAGTGC 59.960 41.667 0.00 0.00 0.00 4.40
2295 2378 5.799827 TCCAACCCTCCAAAATTTAAGTG 57.200 39.130 0.00 0.00 0.00 3.16
2296 2379 5.306937 CCTTCCAACCCTCCAAAATTTAAGT 59.693 40.000 0.00 0.00 0.00 2.24
2297 2380 5.306937 ACCTTCCAACCCTCCAAAATTTAAG 59.693 40.000 0.00 0.00 0.00 1.85
2298 2381 5.220521 ACCTTCCAACCCTCCAAAATTTAA 58.779 37.500 0.00 0.00 0.00 1.52
2299 2382 4.821940 ACCTTCCAACCCTCCAAAATTTA 58.178 39.130 0.00 0.00 0.00 1.40
2300 2383 3.664320 ACCTTCCAACCCTCCAAAATTT 58.336 40.909 0.00 0.00 0.00 1.82
2301 2384 3.344535 ACCTTCCAACCCTCCAAAATT 57.655 42.857 0.00 0.00 0.00 1.82
2302 2385 2.972021 CAACCTTCCAACCCTCCAAAAT 59.028 45.455 0.00 0.00 0.00 1.82
2303 2386 2.023888 TCAACCTTCCAACCCTCCAAAA 60.024 45.455 0.00 0.00 0.00 2.44
2304 2387 1.571457 TCAACCTTCCAACCCTCCAAA 59.429 47.619 0.00 0.00 0.00 3.28
2305 2388 1.227249 TCAACCTTCCAACCCTCCAA 58.773 50.000 0.00 0.00 0.00 3.53
2306 2389 1.227249 TTCAACCTTCCAACCCTCCA 58.773 50.000 0.00 0.00 0.00 3.86
2307 2390 2.375014 TTTCAACCTTCCAACCCTCC 57.625 50.000 0.00 0.00 0.00 4.30
2308 2391 3.641436 ACATTTTCAACCTTCCAACCCTC 59.359 43.478 0.00 0.00 0.00 4.30
2309 2392 3.653164 ACATTTTCAACCTTCCAACCCT 58.347 40.909 0.00 0.00 0.00 4.34
2310 2393 5.011635 ACATACATTTTCAACCTTCCAACCC 59.988 40.000 0.00 0.00 0.00 4.11
2311 2394 6.096673 ACATACATTTTCAACCTTCCAACC 57.903 37.500 0.00 0.00 0.00 3.77
2312 2395 9.535878 TTTAACATACATTTTCAACCTTCCAAC 57.464 29.630 0.00 0.00 0.00 3.77
2313 2396 9.535878 GTTTAACATACATTTTCAACCTTCCAA 57.464 29.630 0.00 0.00 0.00 3.53
2314 2397 8.919145 AGTTTAACATACATTTTCAACCTTCCA 58.081 29.630 0.00 0.00 0.00 3.53
2338 2421 9.823647 CCACTCTGACTAAAATCATGTATTAGT 57.176 33.333 15.44 15.44 41.31 2.24
2339 2422 8.768955 GCCACTCTGACTAAAATCATGTATTAG 58.231 37.037 10.99 10.99 33.79 1.73
2340 2423 8.264347 TGCCACTCTGACTAAAATCATGTATTA 58.736 33.333 0.00 0.00 0.00 0.98
2341 2424 7.066284 GTGCCACTCTGACTAAAATCATGTATT 59.934 37.037 0.00 0.00 0.00 1.89
2342 2425 6.540189 GTGCCACTCTGACTAAAATCATGTAT 59.460 38.462 0.00 0.00 0.00 2.29
2343 2426 5.874810 GTGCCACTCTGACTAAAATCATGTA 59.125 40.000 0.00 0.00 0.00 2.29
2344 2427 4.697352 GTGCCACTCTGACTAAAATCATGT 59.303 41.667 0.00 0.00 0.00 3.21
2345 2428 4.940046 AGTGCCACTCTGACTAAAATCATG 59.060 41.667 0.00 0.00 0.00 3.07
2346 2429 5.171339 AGTGCCACTCTGACTAAAATCAT 57.829 39.130 0.00 0.00 0.00 2.45
2347 2430 4.623932 AGTGCCACTCTGACTAAAATCA 57.376 40.909 0.00 0.00 0.00 2.57
2348 2431 4.154918 CCAAGTGCCACTCTGACTAAAATC 59.845 45.833 0.00 0.00 0.00 2.17
2349 2432 4.074970 CCAAGTGCCACTCTGACTAAAAT 58.925 43.478 0.00 0.00 0.00 1.82
2350 2433 3.118038 ACCAAGTGCCACTCTGACTAAAA 60.118 43.478 0.00 0.00 0.00 1.52
2351 2434 2.438021 ACCAAGTGCCACTCTGACTAAA 59.562 45.455 0.00 0.00 0.00 1.85
2352 2435 2.047061 ACCAAGTGCCACTCTGACTAA 58.953 47.619 0.00 0.00 0.00 2.24
2353 2436 1.717032 ACCAAGTGCCACTCTGACTA 58.283 50.000 0.00 0.00 0.00 2.59
2354 2437 0.839946 AACCAAGTGCCACTCTGACT 59.160 50.000 0.00 0.00 0.00 3.41
2355 2438 1.680338 AAACCAAGTGCCACTCTGAC 58.320 50.000 0.00 0.00 0.00 3.51
2356 2439 2.224523 CCTAAACCAAGTGCCACTCTGA 60.225 50.000 0.00 0.00 0.00 3.27
2357 2440 2.154462 CCTAAACCAAGTGCCACTCTG 58.846 52.381 0.00 0.00 0.00 3.35
2358 2441 1.073923 CCCTAAACCAAGTGCCACTCT 59.926 52.381 0.00 0.00 0.00 3.24
2359 2442 1.202891 ACCCTAAACCAAGTGCCACTC 60.203 52.381 0.00 0.00 0.00 3.51
2360 2443 0.850784 ACCCTAAACCAAGTGCCACT 59.149 50.000 0.00 0.00 0.00 4.00
2361 2444 1.699730 AACCCTAAACCAAGTGCCAC 58.300 50.000 0.00 0.00 0.00 5.01
2362 2445 2.712087 TCTAACCCTAAACCAAGTGCCA 59.288 45.455 0.00 0.00 0.00 4.92
2363 2446 3.244805 ACTCTAACCCTAAACCAAGTGCC 60.245 47.826 0.00 0.00 0.00 5.01
2364 2447 3.751698 CACTCTAACCCTAAACCAAGTGC 59.248 47.826 0.00 0.00 0.00 4.40
2365 2448 4.324267 CCACTCTAACCCTAAACCAAGTG 58.676 47.826 0.00 0.00 34.18 3.16
2366 2449 3.244805 GCCACTCTAACCCTAAACCAAGT 60.245 47.826 0.00 0.00 0.00 3.16
2367 2450 3.244770 TGCCACTCTAACCCTAAACCAAG 60.245 47.826 0.00 0.00 0.00 3.61
2368 2451 2.712087 TGCCACTCTAACCCTAAACCAA 59.288 45.455 0.00 0.00 0.00 3.67
2369 2452 2.039348 GTGCCACTCTAACCCTAAACCA 59.961 50.000 0.00 0.00 0.00 3.67
2370 2453 2.305052 AGTGCCACTCTAACCCTAAACC 59.695 50.000 0.00 0.00 0.00 3.27
2371 2454 3.697619 AGTGCCACTCTAACCCTAAAC 57.302 47.619 0.00 0.00 0.00 2.01
2372 2455 3.244770 CCAAGTGCCACTCTAACCCTAAA 60.245 47.826 0.00 0.00 0.00 1.85
2373 2456 2.304761 CCAAGTGCCACTCTAACCCTAA 59.695 50.000 0.00 0.00 0.00 2.69
2374 2457 1.906574 CCAAGTGCCACTCTAACCCTA 59.093 52.381 0.00 0.00 0.00 3.53
2375 2458 0.693049 CCAAGTGCCACTCTAACCCT 59.307 55.000 0.00 0.00 0.00 4.34
2376 2459 0.400594 ACCAAGTGCCACTCTAACCC 59.599 55.000 0.00 0.00 0.00 4.11
2377 2460 2.271944 AACCAAGTGCCACTCTAACC 57.728 50.000 0.00 0.00 0.00 2.85
2378 2461 3.751698 CCTAAACCAAGTGCCACTCTAAC 59.248 47.826 0.00 0.00 0.00 2.34
2379 2462 3.649023 TCCTAAACCAAGTGCCACTCTAA 59.351 43.478 0.00 0.00 0.00 2.10
2380 2463 3.244582 TCCTAAACCAAGTGCCACTCTA 58.755 45.455 0.00 0.00 0.00 2.43
2381 2464 2.054799 TCCTAAACCAAGTGCCACTCT 58.945 47.619 0.00 0.00 0.00 3.24
2382 2465 2.561478 TCCTAAACCAAGTGCCACTC 57.439 50.000 0.00 0.00 0.00 3.51
2383 2466 3.525800 AATCCTAAACCAAGTGCCACT 57.474 42.857 0.00 0.00 0.00 4.00
2384 2467 5.715434 TTAAATCCTAAACCAAGTGCCAC 57.285 39.130 0.00 0.00 0.00 5.01
2385 2468 5.245075 CCTTTAAATCCTAAACCAAGTGCCA 59.755 40.000 0.00 0.00 0.00 4.92
2386 2469 5.337250 CCCTTTAAATCCTAAACCAAGTGCC 60.337 44.000 0.00 0.00 0.00 5.01
2387 2470 5.479027 TCCCTTTAAATCCTAAACCAAGTGC 59.521 40.000 0.00 0.00 0.00 4.40
2388 2471 7.533289 TTCCCTTTAAATCCTAAACCAAGTG 57.467 36.000 0.00 0.00 0.00 3.16
2389 2472 9.831682 TTATTCCCTTTAAATCCTAAACCAAGT 57.168 29.630 0.00 0.00 0.00 3.16
2398 2481 9.617523 CATGCAAATTTATTCCCTTTAAATCCT 57.382 29.630 0.00 0.00 30.79 3.24
2399 2482 9.394767 ACATGCAAATTTATTCCCTTTAAATCC 57.605 29.630 0.00 0.00 30.79 3.01
2405 2488 9.435688 GAACTAACATGCAAATTTATTCCCTTT 57.564 29.630 0.00 0.00 0.00 3.11
2406 2489 8.592809 TGAACTAACATGCAAATTTATTCCCTT 58.407 29.630 0.00 0.00 0.00 3.95
2407 2490 8.133024 TGAACTAACATGCAAATTTATTCCCT 57.867 30.769 0.00 0.00 0.00 4.20
2408 2491 8.819974 CATGAACTAACATGCAAATTTATTCCC 58.180 33.333 0.00 0.00 40.54 3.97
2409 2492 9.585099 TCATGAACTAACATGCAAATTTATTCC 57.415 29.630 0.00 0.00 44.79 3.01
2413 2496 9.979578 AAAGTCATGAACTAACATGCAAATTTA 57.020 25.926 0.00 0.00 44.79 1.40
2414 2497 8.891671 AAAGTCATGAACTAACATGCAAATTT 57.108 26.923 0.00 0.00 44.79 1.82
2415 2498 8.891671 AAAAGTCATGAACTAACATGCAAATT 57.108 26.923 0.00 0.00 44.79 1.82
2416 2499 8.767085 CAAAAAGTCATGAACTAACATGCAAAT 58.233 29.630 0.00 0.00 44.79 2.32
2417 2500 7.763528 ACAAAAAGTCATGAACTAACATGCAAA 59.236 29.630 0.00 0.00 44.79 3.68
2418 2501 7.264221 ACAAAAAGTCATGAACTAACATGCAA 58.736 30.769 0.00 0.00 44.79 4.08
2419 2502 6.804677 ACAAAAAGTCATGAACTAACATGCA 58.195 32.000 0.00 0.00 44.79 3.96
2420 2503 7.698836 AACAAAAAGTCATGAACTAACATGC 57.301 32.000 0.00 0.00 44.79 4.06
2421 2504 9.299963 TCAAACAAAAAGTCATGAACTAACATG 57.700 29.630 0.00 0.00 46.01 3.21
2422 2505 9.868277 TTCAAACAAAAAGTCATGAACTAACAT 57.132 25.926 0.00 0.00 37.17 2.71
2423 2506 9.868277 ATTCAAACAAAAAGTCATGAACTAACA 57.132 25.926 0.00 0.00 38.20 2.41
2427 2510 9.434420 TTTCATTCAAACAAAAAGTCATGAACT 57.566 25.926 0.00 0.00 38.20 3.01
2428 2511 9.476761 GTTTCATTCAAACAAAAAGTCATGAAC 57.523 29.630 0.00 0.00 43.60 3.18
2442 2525 4.279420 AGAAGCCCTCTGTTTCATTCAAAC 59.721 41.667 0.00 0.00 44.31 2.93
2443 2526 4.473444 AGAAGCCCTCTGTTTCATTCAAA 58.527 39.130 0.00 0.00 36.71 2.69
2444 2527 4.074970 GAGAAGCCCTCTGTTTCATTCAA 58.925 43.478 0.00 0.00 36.71 2.69
2445 2528 3.072915 TGAGAAGCCCTCTGTTTCATTCA 59.927 43.478 5.47 0.00 42.44 2.57
2446 2529 3.438434 GTGAGAAGCCCTCTGTTTCATTC 59.562 47.826 5.47 0.00 42.44 2.67
2447 2530 3.416156 GTGAGAAGCCCTCTGTTTCATT 58.584 45.455 5.47 0.00 42.44 2.57
2448 2531 2.290577 GGTGAGAAGCCCTCTGTTTCAT 60.291 50.000 5.47 0.00 42.44 2.57
2449 2532 1.072331 GGTGAGAAGCCCTCTGTTTCA 59.928 52.381 5.47 0.00 42.44 2.69
2450 2533 1.611936 GGGTGAGAAGCCCTCTGTTTC 60.612 57.143 5.47 0.00 42.81 2.78
2451 2534 0.402121 GGGTGAGAAGCCCTCTGTTT 59.598 55.000 5.47 0.00 42.81 2.83
2452 2535 1.492993 GGGGTGAGAAGCCCTCTGTT 61.493 60.000 5.73 0.00 45.39 3.16
2453 2536 1.920835 GGGGTGAGAAGCCCTCTGT 60.921 63.158 5.73 0.00 45.39 3.41
2454 2537 2.674220 GGGGGTGAGAAGCCCTCTG 61.674 68.421 12.46 0.00 43.38 3.35
2455 2538 2.285743 GGGGGTGAGAAGCCCTCT 60.286 66.667 12.46 0.00 43.38 3.69
2457 2540 2.285743 GAGGGGGTGAGAAGCCCT 60.286 66.667 12.46 0.00 45.39 5.19
2458 2541 3.412408 GGAGGGGGTGAGAAGCCC 61.412 72.222 4.34 4.34 45.35 5.19
2459 2542 1.575447 ATTGGAGGGGGTGAGAAGCC 61.575 60.000 0.00 0.00 0.00 4.35
2460 2543 0.332972 AATTGGAGGGGGTGAGAAGC 59.667 55.000 0.00 0.00 0.00 3.86
2461 2544 2.907458 AAATTGGAGGGGGTGAGAAG 57.093 50.000 0.00 0.00 0.00 2.85
2462 2545 2.448961 TGAAAATTGGAGGGGGTGAGAA 59.551 45.455 0.00 0.00 0.00 2.87
2463 2546 2.069775 TGAAAATTGGAGGGGGTGAGA 58.930 47.619 0.00 0.00 0.00 3.27
2464 2547 2.603075 TGAAAATTGGAGGGGGTGAG 57.397 50.000 0.00 0.00 0.00 3.51
2465 2548 3.558608 AATGAAAATTGGAGGGGGTGA 57.441 42.857 0.00 0.00 0.00 4.02
2466 2549 5.424895 TCATTAATGAAAATTGGAGGGGGTG 59.575 40.000 15.82 0.00 33.08 4.61
2467 2550 5.598754 TCATTAATGAAAATTGGAGGGGGT 58.401 37.500 15.82 0.00 33.08 4.95
2468 2551 6.558488 TTCATTAATGAAAATTGGAGGGGG 57.442 37.500 25.11 0.00 43.26 5.40
2480 2563 7.860373 CGAGAACTTGTGGTTTTCATTAATGAA 59.140 33.333 23.86 23.86 44.42 2.57
2481 2564 7.227711 TCGAGAACTTGTGGTTTTCATTAATGA 59.772 33.333 14.23 14.23 38.48 2.57
2482 2565 7.359595 TCGAGAACTTGTGGTTTTCATTAATG 58.640 34.615 9.29 9.29 38.48 1.90
2483 2566 7.504924 TCGAGAACTTGTGGTTTTCATTAAT 57.495 32.000 0.00 0.00 38.48 1.40
2484 2567 6.928979 TCGAGAACTTGTGGTTTTCATTAA 57.071 33.333 0.00 0.00 38.48 1.40
2485 2568 6.721321 GTTCGAGAACTTGTGGTTTTCATTA 58.279 36.000 8.58 0.00 38.48 1.90
2486 2569 5.578776 GTTCGAGAACTTGTGGTTTTCATT 58.421 37.500 8.58 0.00 38.48 2.57
2487 2570 5.169836 GTTCGAGAACTTGTGGTTTTCAT 57.830 39.130 8.58 0.00 38.48 2.57
2488 2571 4.609691 GTTCGAGAACTTGTGGTTTTCA 57.390 40.909 8.58 0.00 38.48 2.69
2500 2583 5.659048 AACAAGTCATGAAGTTCGAGAAC 57.341 39.130 7.83 7.83 41.45 3.01
2501 2584 6.423905 CCTAAACAAGTCATGAAGTTCGAGAA 59.576 38.462 0.00 0.00 0.00 2.87
2502 2585 5.926542 CCTAAACAAGTCATGAAGTTCGAGA 59.073 40.000 0.00 0.00 0.00 4.04
2503 2586 5.120830 CCCTAAACAAGTCATGAAGTTCGAG 59.879 44.000 0.00 4.79 0.00 4.04
2504 2587 4.994852 CCCTAAACAAGTCATGAAGTTCGA 59.005 41.667 0.00 0.00 0.00 3.71
2505 2588 4.994852 TCCCTAAACAAGTCATGAAGTTCG 59.005 41.667 0.00 0.00 0.00 3.95
2506 2589 6.710744 TCTTCCCTAAACAAGTCATGAAGTTC 59.289 38.462 0.00 0.00 32.06 3.01
2507 2590 6.601332 TCTTCCCTAAACAAGTCATGAAGTT 58.399 36.000 0.00 0.00 32.06 2.66
2508 2591 6.187727 TCTTCCCTAAACAAGTCATGAAGT 57.812 37.500 0.00 0.00 32.06 3.01
2509 2592 7.510549 TTTCTTCCCTAAACAAGTCATGAAG 57.489 36.000 0.00 0.00 0.00 3.02
2510 2593 7.723616 TCATTTCTTCCCTAAACAAGTCATGAA 59.276 33.333 0.00 0.00 0.00 2.57
2511 2594 7.230747 TCATTTCTTCCCTAAACAAGTCATGA 58.769 34.615 0.00 0.00 0.00 3.07
2512 2595 7.452880 TCATTTCTTCCCTAAACAAGTCATG 57.547 36.000 0.00 0.00 0.00 3.07
2513 2596 9.927081 ATATCATTTCTTCCCTAAACAAGTCAT 57.073 29.630 0.00 0.00 0.00 3.06
2514 2597 9.177608 CATATCATTTCTTCCCTAAACAAGTCA 57.822 33.333 0.00 0.00 0.00 3.41
2515 2598 9.178758 ACATATCATTTCTTCCCTAAACAAGTC 57.821 33.333 0.00 0.00 0.00 3.01
2516 2599 9.533831 AACATATCATTTCTTCCCTAAACAAGT 57.466 29.630 0.00 0.00 0.00 3.16
2519 2602 8.748412 CCAAACATATCATTTCTTCCCTAAACA 58.252 33.333 0.00 0.00 0.00 2.83
2520 2603 8.197439 CCCAAACATATCATTTCTTCCCTAAAC 58.803 37.037 0.00 0.00 0.00 2.01
2521 2604 7.147742 GCCCAAACATATCATTTCTTCCCTAAA 60.148 37.037 0.00 0.00 0.00 1.85
2522 2605 6.323739 GCCCAAACATATCATTTCTTCCCTAA 59.676 38.462 0.00 0.00 0.00 2.69
2523 2606 5.833131 GCCCAAACATATCATTTCTTCCCTA 59.167 40.000 0.00 0.00 0.00 3.53
2524 2607 4.651045 GCCCAAACATATCATTTCTTCCCT 59.349 41.667 0.00 0.00 0.00 4.20
2525 2608 4.405358 TGCCCAAACATATCATTTCTTCCC 59.595 41.667 0.00 0.00 0.00 3.97
2526 2609 5.596836 TGCCCAAACATATCATTTCTTCC 57.403 39.130 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.