Multiple sequence alignment - TraesCS5A01G167600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G167600 chr5A 100.000 1640 0 0 1983 3622 356592036 356593675 0.000000e+00 3029.0
1 TraesCS5A01G167600 chr5A 100.000 1570 0 0 1 1570 356590054 356591623 0.000000e+00 2900.0
2 TraesCS5A01G167600 chr5A 91.576 368 26 5 532 895 27948596 27948230 1.500000e-138 503.0
3 TraesCS5A01G167600 chr5B 94.713 889 39 4 2735 3622 304653659 304654540 0.000000e+00 1375.0
4 TraesCS5A01G167600 chr5B 84.239 368 45 9 886 1243 289557295 289557659 2.680000e-91 346.0
5 TraesCS5A01G167600 chr5B 86.036 222 26 4 884 1101 516711545 516711765 2.170000e-57 233.0
6 TraesCS5A01G167600 chr5B 85.586 222 27 4 884 1101 516725613 516725833 1.010000e-55 228.0
7 TraesCS5A01G167600 chr3D 96.834 537 16 1 1 537 413566196 413565661 0.000000e+00 896.0
8 TraesCS5A01G167600 chr3D 92.562 363 21 5 538 895 277964173 277963812 1.930000e-142 516.0
9 TraesCS5A01G167600 chr3D 92.265 362 23 4 532 890 277952006 277951647 3.230000e-140 508.0
10 TraesCS5A01G167600 chr3D 93.443 244 16 0 3379 3622 319866241 319865998 2.660000e-96 363.0
11 TraesCS5A01G167600 chr1D 96.654 538 16 2 1 537 293467372 293467908 0.000000e+00 893.0
12 TraesCS5A01G167600 chr1D 96.648 537 17 1 1 537 349709614 349710149 0.000000e+00 891.0
13 TraesCS5A01G167600 chr1D 86.085 539 60 11 2160 2692 11157836 11157307 1.890000e-157 566.0
14 TraesCS5A01G167600 chr1D 88.949 371 31 8 548 909 85348584 85348215 1.980000e-122 449.0
15 TraesCS5A01G167600 chr6D 96.648 537 16 2 1 537 21574879 21575413 0.000000e+00 891.0
16 TraesCS5A01G167600 chr6D 96.648 537 17 1 1 537 441463381 441463916 0.000000e+00 891.0
17 TraesCS5A01G167600 chr6D 84.680 594 78 11 2116 2707 91034598 91034016 6.740000e-162 580.0
18 TraesCS5A01G167600 chr6D 92.918 353 19 6 537 884 206939150 206939501 3.230000e-140 508.0
19 TraesCS5A01G167600 chr5D 96.648 537 16 2 1 537 73475397 73474863 0.000000e+00 891.0
20 TraesCS5A01G167600 chr5D 96.648 537 17 1 1 537 230980685 230980150 0.000000e+00 891.0
21 TraesCS5A01G167600 chr5D 91.561 474 29 7 2688 3159 268929451 268928987 0.000000e+00 643.0
22 TraesCS5A01G167600 chr5D 92.437 357 23 3 532 884 45085070 45085426 1.160000e-139 507.0
23 TraesCS5A01G167600 chr5D 88.830 376 36 5 537 909 415351232 415350860 1.190000e-124 457.0
24 TraesCS5A01G167600 chr5D 95.652 276 12 0 3347 3622 268933270 268933545 9.230000e-121 444.0
25 TraesCS5A01G167600 chr5D 95.385 65 3 0 3265 3329 268933136 268933200 1.780000e-18 104.0
26 TraesCS5A01G167600 chr5D 98.276 58 0 1 3155 3212 268927941 268927885 2.300000e-17 100.0
27 TraesCS5A01G167600 chr4D 96.648 537 17 1 1 537 109405079 109405614 0.000000e+00 891.0
28 TraesCS5A01G167600 chr4D 86.703 549 69 3 2145 2689 474563844 474564392 1.110000e-169 606.0
29 TraesCS5A01G167600 chr4D 84.087 597 88 5 2093 2688 493759989 493760579 1.460000e-158 569.0
30 TraesCS5A01G167600 chr2D 96.648 537 17 1 1 537 469778136 469778671 0.000000e+00 891.0
31 TraesCS5A01G167600 chr2D 91.286 241 21 0 3380 3620 532498708 532498948 2.700000e-86 329.0
32 TraesCS5A01G167600 chr7B 87.437 597 66 6 2093 2688 373116970 373117558 0.000000e+00 678.0
33 TraesCS5A01G167600 chr7B 85.045 662 84 14 2040 2692 92058470 92057815 0.000000e+00 660.0
34 TraesCS5A01G167600 chr7B 85.492 193 25 3 904 1095 92059297 92059107 7.930000e-47 198.0
35 TraesCS5A01G167600 chr1B 83.357 703 93 14 2005 2689 301749232 301749928 2.370000e-176 628.0
36 TraesCS5A01G167600 chr1B 82.692 208 29 7 713 914 163401312 163401106 1.030000e-40 178.0
37 TraesCS5A01G167600 chr1B 90.698 43 3 1 853 895 522491529 522491570 5.050000e-04 56.5
38 TraesCS5A01G167600 chr4B 86.789 545 68 3 2147 2688 521732100 521732643 4.000000e-169 604.0
39 TraesCS5A01G167600 chr4B 86.982 169 18 4 727 893 351722081 351722247 1.720000e-43 187.0
40 TraesCS5A01G167600 chr2B 85.529 539 74 3 2155 2690 775468666 775468129 8.780000e-156 560.0
41 TraesCS5A01G167600 chr2B 92.735 234 17 0 3380 3613 632512274 632512507 4.480000e-89 339.0
42 TraesCS5A01G167600 chr2B 91.701 241 20 0 3380 3620 632563393 632563633 5.790000e-88 335.0
43 TraesCS5A01G167600 chr3A 92.758 359 24 2 532 888 666373747 666374105 5.360000e-143 518.0
44 TraesCS5A01G167600 chr3A 91.200 250 22 0 3373 3622 405957580 405957829 1.250000e-89 340.0
45 TraesCS5A01G167600 chr2A 92.978 356 21 4 532 884 129890531 129890177 1.930000e-142 516.0
46 TraesCS5A01G167600 chr7D 92.717 357 21 5 531 884 3295026 3295380 8.970000e-141 510.0
47 TraesCS5A01G167600 chr6A 92.479 359 22 3 531 884 201929346 201929704 3.230000e-140 508.0
48 TraesCS5A01G167600 chr3B 92.400 250 19 0 3373 3622 400288315 400288564 1.240000e-94 357.0
49 TraesCS5A01G167600 chr6B 84.196 367 47 10 886 1243 36374131 36373767 2.680000e-91 346.0
50 TraesCS5A01G167600 chrUn 90.871 241 22 0 3380 3620 25994248 25994488 1.250000e-84 324.0
51 TraesCS5A01G167600 chrUn 85.202 223 28 4 883 1101 379115736 379115957 1.310000e-54 224.0
52 TraesCS5A01G167600 chrUn 85.202 223 28 4 883 1101 379117524 379117745 1.310000e-54 224.0
53 TraesCS5A01G167600 chrUn 85.202 223 28 4 883 1101 404860247 404860026 1.310000e-54 224.0
54 TraesCS5A01G167600 chr1A 100.000 29 0 0 857 885 237187470 237187498 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G167600 chr5A 356590054 356593675 3621 False 2964.5 3029 100.0000 1 3622 2 chr5A.!!$F1 3621
1 TraesCS5A01G167600 chr5B 304653659 304654540 881 False 1375.0 1375 94.7130 2735 3622 1 chr5B.!!$F2 887
2 TraesCS5A01G167600 chr3D 413565661 413566196 535 True 896.0 896 96.8340 1 537 1 chr3D.!!$R4 536
3 TraesCS5A01G167600 chr1D 293467372 293467908 536 False 893.0 893 96.6540 1 537 1 chr1D.!!$F1 536
4 TraesCS5A01G167600 chr1D 349709614 349710149 535 False 891.0 891 96.6480 1 537 1 chr1D.!!$F2 536
5 TraesCS5A01G167600 chr1D 11157307 11157836 529 True 566.0 566 86.0850 2160 2692 1 chr1D.!!$R1 532
6 TraesCS5A01G167600 chr6D 21574879 21575413 534 False 891.0 891 96.6480 1 537 1 chr6D.!!$F1 536
7 TraesCS5A01G167600 chr6D 441463381 441463916 535 False 891.0 891 96.6480 1 537 1 chr6D.!!$F3 536
8 TraesCS5A01G167600 chr6D 91034016 91034598 582 True 580.0 580 84.6800 2116 2707 1 chr6D.!!$R1 591
9 TraesCS5A01G167600 chr5D 73474863 73475397 534 True 891.0 891 96.6480 1 537 1 chr5D.!!$R1 536
10 TraesCS5A01G167600 chr5D 230980150 230980685 535 True 891.0 891 96.6480 1 537 1 chr5D.!!$R2 536
11 TraesCS5A01G167600 chr5D 268927885 268929451 1566 True 371.5 643 94.9185 2688 3212 2 chr5D.!!$R4 524
12 TraesCS5A01G167600 chr4D 109405079 109405614 535 False 891.0 891 96.6480 1 537 1 chr4D.!!$F1 536
13 TraesCS5A01G167600 chr4D 474563844 474564392 548 False 606.0 606 86.7030 2145 2689 1 chr4D.!!$F2 544
14 TraesCS5A01G167600 chr4D 493759989 493760579 590 False 569.0 569 84.0870 2093 2688 1 chr4D.!!$F3 595
15 TraesCS5A01G167600 chr2D 469778136 469778671 535 False 891.0 891 96.6480 1 537 1 chr2D.!!$F1 536
16 TraesCS5A01G167600 chr7B 373116970 373117558 588 False 678.0 678 87.4370 2093 2688 1 chr7B.!!$F1 595
17 TraesCS5A01G167600 chr7B 92057815 92059297 1482 True 429.0 660 85.2685 904 2692 2 chr7B.!!$R1 1788
18 TraesCS5A01G167600 chr1B 301749232 301749928 696 False 628.0 628 83.3570 2005 2689 1 chr1B.!!$F1 684
19 TraesCS5A01G167600 chr4B 521732100 521732643 543 False 604.0 604 86.7890 2147 2688 1 chr4B.!!$F2 541
20 TraesCS5A01G167600 chr2B 775468129 775468666 537 True 560.0 560 85.5290 2155 2690 1 chr2B.!!$R1 535
21 TraesCS5A01G167600 chrUn 379115736 379117745 2009 False 224.0 224 85.2020 883 1101 2 chrUn.!!$F2 218

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 774 0.033504 ACACCACGGTAGTTCTGCTG 59.966 55.0 0.0 0.0 0.0 4.41 F
1158 1165 0.037046 GCCAAAAAGCCATCCACCAG 60.037 55.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 2130 0.103208 ATCTACACAGCGGCAGTAGC 59.897 55.0 17.11 0.0 36.16 3.58 R
2980 3660 0.178992 CCCCACTTCAGTTGGCAAGA 60.179 55.0 0.00 0.0 30.07 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 167 2.650322 CATACGCAACAACCCCCTTAT 58.350 47.619 0.00 0.00 0.00 1.73
264 267 1.560004 CTCACGCTTGCGTGACACAT 61.560 55.000 36.34 6.49 42.96 3.21
398 401 9.577222 AACACATCATTGGATCATAATATGTGA 57.423 29.630 24.51 9.61 43.44 3.58
416 419 3.505680 TGTGACATAAAGCACCATGTTCC 59.494 43.478 0.00 0.00 35.55 3.62
500 503 5.820947 TGATGATGGTGATGTTGATGAAGAG 59.179 40.000 0.00 0.00 0.00 2.85
516 519 2.910479 AGGATCACCGCGGCGATA 60.910 61.111 27.51 10.19 41.83 2.92
527 530 2.058675 CGGCGATAATTCCCCTCCT 58.941 57.895 0.00 0.00 0.00 3.69
537 540 0.846427 TTCCCCTCCTGATGGCACTT 60.846 55.000 0.00 0.00 0.00 3.16
538 541 0.044092 TCCCCTCCTGATGGCACTTA 59.956 55.000 0.00 0.00 0.00 2.24
539 542 1.143813 CCCCTCCTGATGGCACTTAT 58.856 55.000 0.00 0.00 0.00 1.73
540 543 2.090210 TCCCCTCCTGATGGCACTTATA 60.090 50.000 0.00 0.00 0.00 0.98
541 544 2.304180 CCCCTCCTGATGGCACTTATAG 59.696 54.545 0.00 0.00 0.00 1.31
542 545 2.304180 CCCTCCTGATGGCACTTATAGG 59.696 54.545 0.00 0.00 0.00 2.57
543 546 3.242867 CCTCCTGATGGCACTTATAGGA 58.757 50.000 0.00 0.00 33.59 2.94
544 547 3.260380 CCTCCTGATGGCACTTATAGGAG 59.740 52.174 19.33 19.33 46.84 3.69
545 548 4.199002 TCCTGATGGCACTTATAGGAGA 57.801 45.455 0.00 0.00 31.19 3.71
546 549 4.155709 TCCTGATGGCACTTATAGGAGAG 58.844 47.826 0.00 0.00 31.19 3.20
547 550 3.260380 CCTGATGGCACTTATAGGAGAGG 59.740 52.174 0.00 0.00 0.00 3.69
548 551 3.900601 CTGATGGCACTTATAGGAGAGGT 59.099 47.826 0.00 0.00 0.00 3.85
549 552 4.298626 TGATGGCACTTATAGGAGAGGTT 58.701 43.478 0.00 0.00 0.00 3.50
550 553 4.101585 TGATGGCACTTATAGGAGAGGTTG 59.898 45.833 0.00 0.00 0.00 3.77
551 554 2.771943 TGGCACTTATAGGAGAGGTTGG 59.228 50.000 0.00 0.00 0.00 3.77
552 555 2.485657 GGCACTTATAGGAGAGGTTGGC 60.486 54.545 0.00 0.00 0.00 4.52
553 556 2.803492 GCACTTATAGGAGAGGTTGGCG 60.803 54.545 0.00 0.00 0.00 5.69
554 557 2.431057 CACTTATAGGAGAGGTTGGCGT 59.569 50.000 0.00 0.00 0.00 5.68
555 558 2.694109 ACTTATAGGAGAGGTTGGCGTC 59.306 50.000 0.00 0.00 0.00 5.19
556 559 1.315690 TATAGGAGAGGTTGGCGTCG 58.684 55.000 0.00 0.00 34.93 5.12
557 560 0.395311 ATAGGAGAGGTTGGCGTCGA 60.395 55.000 0.00 0.00 34.93 4.20
558 561 1.030488 TAGGAGAGGTTGGCGTCGAG 61.030 60.000 0.00 0.00 34.93 4.04
559 562 2.341101 GGAGAGGTTGGCGTCGAGA 61.341 63.158 0.00 0.00 34.93 4.04
560 563 1.137825 GAGAGGTTGGCGTCGAGAG 59.862 63.158 0.00 0.00 34.93 3.20
561 564 2.507324 GAGGTTGGCGTCGAGAGC 60.507 66.667 0.00 4.36 0.00 4.09
562 565 3.282745 GAGGTTGGCGTCGAGAGCA 62.283 63.158 13.82 0.00 36.08 4.26
563 566 2.357034 GGTTGGCGTCGAGAGCAA 60.357 61.111 13.82 0.59 36.08 3.91
564 567 2.383527 GGTTGGCGTCGAGAGCAAG 61.384 63.158 13.82 0.00 36.08 4.01
565 568 1.664965 GTTGGCGTCGAGAGCAAGT 60.665 57.895 13.82 0.00 36.08 3.16
566 569 1.069090 TTGGCGTCGAGAGCAAGTT 59.931 52.632 13.82 0.00 36.08 2.66
567 570 0.315886 TTGGCGTCGAGAGCAAGTTA 59.684 50.000 13.82 0.00 36.08 2.24
568 571 0.109272 TGGCGTCGAGAGCAAGTTAG 60.109 55.000 13.82 0.00 36.08 2.34
569 572 0.802607 GGCGTCGAGAGCAAGTTAGG 60.803 60.000 13.82 0.00 36.08 2.69
570 573 0.802607 GCGTCGAGAGCAAGTTAGGG 60.803 60.000 7.82 0.00 34.19 3.53
571 574 0.179134 CGTCGAGAGCAAGTTAGGGG 60.179 60.000 0.00 0.00 0.00 4.79
572 575 0.175989 GTCGAGAGCAAGTTAGGGGG 59.824 60.000 0.00 0.00 0.00 5.40
573 576 1.153349 CGAGAGCAAGTTAGGGGGC 60.153 63.158 0.00 0.00 0.00 5.80
574 577 1.224870 GAGAGCAAGTTAGGGGGCC 59.775 63.158 0.00 0.00 0.00 5.80
575 578 2.272230 GAGAGCAAGTTAGGGGGCCC 62.272 65.000 15.76 15.76 0.00 5.80
576 579 3.347590 AGCAAGTTAGGGGGCCCC 61.348 66.667 35.78 35.78 45.90 5.80
591 594 2.606519 CCCAGGGGAAGTCCACGA 60.607 66.667 0.00 0.00 46.41 4.35
592 595 2.660064 CCCAGGGGAAGTCCACGAG 61.660 68.421 0.00 0.00 46.41 4.18
593 596 2.660064 CCAGGGGAAGTCCACGAGG 61.660 68.421 0.00 0.00 46.41 4.63
594 597 3.003763 AGGGGAAGTCCACGAGGC 61.004 66.667 0.00 0.00 46.41 4.70
595 598 3.319198 GGGGAAGTCCACGAGGCA 61.319 66.667 0.00 0.00 37.91 4.75
596 599 2.047179 GGGAAGTCCACGAGGCAC 60.047 66.667 0.00 0.00 37.91 5.01
597 600 2.741092 GGAAGTCCACGAGGCACA 59.259 61.111 0.00 0.00 35.64 4.57
598 601 1.374758 GGAAGTCCACGAGGCACAG 60.375 63.158 0.00 0.00 35.64 3.66
599 602 1.374758 GAAGTCCACGAGGCACAGG 60.375 63.158 0.00 0.00 33.74 4.00
600 603 2.788191 GAAGTCCACGAGGCACAGGG 62.788 65.000 0.00 0.00 33.74 4.45
601 604 4.394712 GTCCACGAGGCACAGGGG 62.395 72.222 0.00 0.00 33.74 4.79
638 641 4.181010 CGCCCCCACCCTCATGAG 62.181 72.222 16.24 16.24 0.00 2.90
647 650 4.181010 CCTCATGAGGCCCACGGG 62.181 72.222 28.45 3.76 42.44 5.28
648 651 3.083349 CTCATGAGGCCCACGGGA 61.083 66.667 15.38 0.00 37.50 5.14
649 652 3.391665 CTCATGAGGCCCACGGGAC 62.392 68.421 15.38 1.83 45.79 4.46
665 668 2.480642 GGACTCCCCTCTGGTAGATT 57.519 55.000 0.00 0.00 34.77 2.40
666 669 2.765502 GGACTCCCCTCTGGTAGATTT 58.234 52.381 0.00 0.00 34.77 2.17
667 670 3.116174 GGACTCCCCTCTGGTAGATTTT 58.884 50.000 0.00 0.00 34.77 1.82
668 671 3.523972 GGACTCCCCTCTGGTAGATTTTT 59.476 47.826 0.00 0.00 34.77 1.94
669 672 4.384318 GGACTCCCCTCTGGTAGATTTTTC 60.384 50.000 0.00 0.00 34.77 2.29
670 673 4.439860 ACTCCCCTCTGGTAGATTTTTCT 58.560 43.478 0.00 0.00 34.77 2.52
671 674 4.852697 ACTCCCCTCTGGTAGATTTTTCTT 59.147 41.667 0.00 0.00 34.77 2.52
672 675 5.045505 ACTCCCCTCTGGTAGATTTTTCTTC 60.046 44.000 0.00 0.00 34.77 2.87
673 676 4.227527 TCCCCTCTGGTAGATTTTTCTTCC 59.772 45.833 0.00 0.00 34.77 3.46
674 677 4.018415 CCCCTCTGGTAGATTTTTCTTCCA 60.018 45.833 2.05 2.05 36.11 3.53
709 712 8.986477 ATATTTTCCAGAAAAATTCTCCGTTG 57.014 30.769 9.45 0.00 43.51 4.10
710 713 6.458232 TTTTCCAGAAAAATTCTCCGTTGA 57.542 33.333 3.12 0.00 38.11 3.18
711 714 6.648879 TTTCCAGAAAAATTCTCCGTTGAT 57.351 33.333 0.00 0.00 38.11 2.57
712 715 6.648879 TTCCAGAAAAATTCTCCGTTGATT 57.351 33.333 0.00 0.00 38.11 2.57
713 716 6.648879 TCCAGAAAAATTCTCCGTTGATTT 57.351 33.333 0.00 0.00 38.11 2.17
714 717 7.049799 TCCAGAAAAATTCTCCGTTGATTTT 57.950 32.000 0.00 0.00 38.11 1.82
715 718 7.145323 TCCAGAAAAATTCTCCGTTGATTTTC 58.855 34.615 0.00 0.00 38.11 2.29
716 719 6.922957 CCAGAAAAATTCTCCGTTGATTTTCA 59.077 34.615 10.33 0.00 38.11 2.69
717 720 7.599998 CCAGAAAAATTCTCCGTTGATTTTCAT 59.400 33.333 10.33 0.00 38.11 2.57
718 721 8.642020 CAGAAAAATTCTCCGTTGATTTTCATC 58.358 33.333 10.33 7.48 38.11 2.92
719 722 7.538678 AGAAAAATTCTCCGTTGATTTTCATCG 59.461 33.333 10.33 1.92 38.55 3.84
720 723 3.740044 TTCTCCGTTGATTTTCATCGC 57.260 42.857 3.14 0.00 38.02 4.58
721 724 2.694213 TCTCCGTTGATTTTCATCGCA 58.306 42.857 3.14 0.00 38.02 5.10
722 725 3.270027 TCTCCGTTGATTTTCATCGCAT 58.730 40.909 3.14 0.00 38.02 4.73
723 726 3.689161 TCTCCGTTGATTTTCATCGCATT 59.311 39.130 3.14 0.00 38.02 3.56
724 727 4.014847 TCCGTTGATTTTCATCGCATTC 57.985 40.909 3.14 0.00 38.02 2.67
725 728 3.108144 CCGTTGATTTTCATCGCATTCC 58.892 45.455 3.14 0.00 38.02 3.01
726 729 2.777845 CGTTGATTTTCATCGCATTCCG 59.222 45.455 0.00 0.00 33.63 4.30
739 742 5.873179 TCGCATTCCGAGAACTTTTATTT 57.127 34.783 0.00 0.00 41.89 1.40
740 743 6.249035 TCGCATTCCGAGAACTTTTATTTT 57.751 33.333 0.00 0.00 41.89 1.82
741 744 6.674066 TCGCATTCCGAGAACTTTTATTTTT 58.326 32.000 0.00 0.00 41.89 1.94
742 745 7.808672 TCGCATTCCGAGAACTTTTATTTTTA 58.191 30.769 0.00 0.00 41.89 1.52
743 746 7.747357 TCGCATTCCGAGAACTTTTATTTTTAC 59.253 33.333 0.00 0.00 41.89 2.01
744 747 7.535940 CGCATTCCGAGAACTTTTATTTTTACA 59.464 33.333 0.00 0.00 40.02 2.41
745 748 8.635983 GCATTCCGAGAACTTTTATTTTTACAC 58.364 33.333 0.00 0.00 0.00 2.90
746 749 9.672086 CATTCCGAGAACTTTTATTTTTACACA 57.328 29.630 0.00 0.00 0.00 3.72
759 762 5.824243 TTTTTACACAAAACAACACCACG 57.176 34.783 0.00 0.00 33.39 4.94
760 763 3.489180 TTACACAAAACAACACCACGG 57.511 42.857 0.00 0.00 0.00 4.94
761 764 1.249407 ACACAAAACAACACCACGGT 58.751 45.000 0.00 0.00 0.00 4.83
762 765 2.434428 ACACAAAACAACACCACGGTA 58.566 42.857 0.00 0.00 0.00 4.02
763 766 2.420722 ACACAAAACAACACCACGGTAG 59.579 45.455 0.00 0.00 0.00 3.18
764 767 2.420722 CACAAAACAACACCACGGTAGT 59.579 45.455 0.00 0.00 0.00 2.73
765 768 3.083293 ACAAAACAACACCACGGTAGTT 58.917 40.909 0.00 0.00 0.00 2.24
766 769 3.127376 ACAAAACAACACCACGGTAGTTC 59.873 43.478 0.00 0.00 0.00 3.01
767 770 2.994186 AACAACACCACGGTAGTTCT 57.006 45.000 0.00 0.00 0.00 3.01
768 771 2.234300 ACAACACCACGGTAGTTCTG 57.766 50.000 0.00 0.00 0.00 3.02
769 772 0.865769 CAACACCACGGTAGTTCTGC 59.134 55.000 0.00 0.00 0.00 4.26
770 773 0.756903 AACACCACGGTAGTTCTGCT 59.243 50.000 0.00 0.00 0.00 4.24
771 774 0.033504 ACACCACGGTAGTTCTGCTG 59.966 55.000 0.00 0.00 0.00 4.41
772 775 0.317160 CACCACGGTAGTTCTGCTGA 59.683 55.000 3.92 0.00 0.00 4.26
773 776 1.045407 ACCACGGTAGTTCTGCTGAA 58.955 50.000 1.33 1.33 0.00 3.02
774 777 1.414919 ACCACGGTAGTTCTGCTGAAA 59.585 47.619 7.68 0.00 33.52 2.69
775 778 2.158871 ACCACGGTAGTTCTGCTGAAAA 60.159 45.455 7.68 0.00 33.52 2.29
776 779 2.223377 CCACGGTAGTTCTGCTGAAAAC 59.777 50.000 7.68 9.13 33.52 2.43
777 780 2.869801 CACGGTAGTTCTGCTGAAAACA 59.130 45.455 7.68 0.00 33.52 2.83
778 781 3.059597 CACGGTAGTTCTGCTGAAAACAG 60.060 47.826 7.68 11.76 33.52 3.16
785 788 3.034030 GCTGAAAACAGCGCCAGT 58.966 55.556 2.29 0.00 38.52 4.00
786 789 1.081840 GCTGAAAACAGCGCCAGTC 60.082 57.895 2.29 0.00 38.52 3.51
787 790 1.576421 CTGAAAACAGCGCCAGTCC 59.424 57.895 2.29 0.00 0.00 3.85
788 791 2.175184 CTGAAAACAGCGCCAGTCCG 62.175 60.000 2.29 0.00 0.00 4.79
789 792 2.966309 GAAAACAGCGCCAGTCCGG 61.966 63.158 2.29 0.00 38.11 5.14
790 793 3.469863 AAAACAGCGCCAGTCCGGA 62.470 57.895 2.29 0.00 36.56 5.14
791 794 2.748058 AAAACAGCGCCAGTCCGGAT 62.748 55.000 7.81 0.00 36.56 4.18
792 795 2.748058 AAACAGCGCCAGTCCGGATT 62.748 55.000 7.81 0.00 36.56 3.01
793 796 1.895020 AACAGCGCCAGTCCGGATTA 61.895 55.000 7.81 0.00 36.56 1.75
794 797 1.592669 CAGCGCCAGTCCGGATTAG 60.593 63.158 7.81 0.00 36.56 1.73
795 798 2.058595 AGCGCCAGTCCGGATTAGT 61.059 57.895 7.81 0.00 36.56 2.24
796 799 1.153429 GCGCCAGTCCGGATTAGTT 60.153 57.895 7.81 0.00 36.56 2.24
797 800 1.152383 GCGCCAGTCCGGATTAGTTC 61.152 60.000 7.81 0.00 36.56 3.01
798 801 0.460311 CGCCAGTCCGGATTAGTTCT 59.540 55.000 7.81 0.00 36.56 3.01
799 802 1.679680 CGCCAGTCCGGATTAGTTCTA 59.320 52.381 7.81 0.00 36.56 2.10
800 803 2.100252 CGCCAGTCCGGATTAGTTCTAA 59.900 50.000 7.81 0.00 36.56 2.10
801 804 3.243771 CGCCAGTCCGGATTAGTTCTAAT 60.244 47.826 7.81 4.95 36.56 1.73
802 805 4.308265 GCCAGTCCGGATTAGTTCTAATC 58.692 47.826 7.81 18.73 36.56 1.75
803 806 4.202223 GCCAGTCCGGATTAGTTCTAATCA 60.202 45.833 24.55 9.60 38.00 2.57
804 807 5.533482 CCAGTCCGGATTAGTTCTAATCAG 58.467 45.833 24.55 21.59 38.00 2.90
805 808 5.302059 CCAGTCCGGATTAGTTCTAATCAGA 59.698 44.000 24.55 19.41 38.00 3.27
806 809 6.015010 CCAGTCCGGATTAGTTCTAATCAGAT 60.015 42.308 24.55 12.97 38.00 2.90
807 810 7.087639 CAGTCCGGATTAGTTCTAATCAGATC 58.912 42.308 24.55 18.09 38.00 2.75
808 811 6.778069 AGTCCGGATTAGTTCTAATCAGATCA 59.222 38.462 24.55 11.71 38.00 2.92
809 812 7.453126 AGTCCGGATTAGTTCTAATCAGATCAT 59.547 37.037 24.55 13.12 38.00 2.45
810 813 8.740906 GTCCGGATTAGTTCTAATCAGATCATA 58.259 37.037 24.55 9.39 38.00 2.15
811 814 8.740906 TCCGGATTAGTTCTAATCAGATCATAC 58.259 37.037 24.55 10.70 38.00 2.39
812 815 7.976734 CCGGATTAGTTCTAATCAGATCATACC 59.023 40.741 24.55 10.78 38.00 2.73
813 816 8.523658 CGGATTAGTTCTAATCAGATCATACCA 58.476 37.037 24.55 0.00 38.00 3.25
848 851 7.524717 AAACTATTGTAAACTTGGCATGAGT 57.475 32.000 7.45 0.00 0.00 3.41
849 852 8.630054 AAACTATTGTAAACTTGGCATGAGTA 57.370 30.769 7.45 0.00 0.00 2.59
850 853 7.611213 ACTATTGTAAACTTGGCATGAGTAC 57.389 36.000 7.45 8.79 0.00 2.73
851 854 7.394816 ACTATTGTAAACTTGGCATGAGTACT 58.605 34.615 7.45 0.00 0.00 2.73
852 855 7.883311 ACTATTGTAAACTTGGCATGAGTACTT 59.117 33.333 7.45 0.00 0.00 2.24
853 856 6.554334 TTGTAAACTTGGCATGAGTACTTC 57.446 37.500 7.45 0.00 0.00 3.01
854 857 5.616270 TGTAAACTTGGCATGAGTACTTCA 58.384 37.500 7.45 0.00 40.85 3.02
856 859 7.390823 TGTAAACTTGGCATGAGTACTTCATA 58.609 34.615 7.45 0.00 44.76 2.15
857 860 7.880713 TGTAAACTTGGCATGAGTACTTCATAA 59.119 33.333 7.45 0.00 44.76 1.90
858 861 7.759489 AAACTTGGCATGAGTACTTCATAAA 57.241 32.000 7.45 0.00 44.76 1.40
859 862 7.944729 AACTTGGCATGAGTACTTCATAAAT 57.055 32.000 7.45 0.00 44.76 1.40
860 863 7.944729 ACTTGGCATGAGTACTTCATAAATT 57.055 32.000 7.45 0.00 44.76 1.82
861 864 9.461312 AACTTGGCATGAGTACTTCATAAATTA 57.539 29.630 7.45 0.00 44.76 1.40
862 865 9.632638 ACTTGGCATGAGTACTTCATAAATTAT 57.367 29.630 7.45 0.00 44.76 1.28
895 898 1.660607 GACGTATCACACCACATGCTG 59.339 52.381 0.00 0.00 0.00 4.41
899 902 0.537828 ATCACACCACATGCTGCACA 60.538 50.000 3.57 0.00 0.00 4.57
914 917 5.941733 TGCTGCACAGTCAATAATTAACAG 58.058 37.500 0.00 0.00 0.00 3.16
917 920 6.573664 TGCACAGTCAATAATTAACAGCTT 57.426 33.333 0.00 0.00 0.00 3.74
935 939 5.181245 ACAGCTTAATTTACTGCATGAACGT 59.819 36.000 0.00 0.00 34.72 3.99
957 961 8.393395 ACGTTTAATGCTGTAATTAATGCTTG 57.607 30.769 10.86 0.00 33.24 4.01
1012 1017 6.149633 GCTTATGAGCCAATTTATAAACCGG 58.850 40.000 0.00 0.00 43.29 5.28
1021 1026 5.433526 CAATTTATAAACCGGTCAGGAGGA 58.566 41.667 8.04 0.00 45.00 3.71
1043 1048 3.857157 TGCCTTACCAGAGAAAAGTGT 57.143 42.857 0.00 0.00 0.00 3.55
1051 1056 3.391296 ACCAGAGAAAAGTGTTCTGCCTA 59.609 43.478 0.00 0.00 37.58 3.93
1053 1058 4.503991 CCAGAGAAAAGTGTTCTGCCTACT 60.504 45.833 0.00 0.00 37.58 2.57
1057 1062 5.306394 AGAAAAGTGTTCTGCCTACTTACC 58.694 41.667 0.00 0.00 33.82 2.85
1061 1066 5.340439 AGTGTTCTGCCTACTTACCATAC 57.660 43.478 0.00 0.00 0.00 2.39
1068 1073 5.959594 TCTGCCTACTTACCATACCAGTAAA 59.040 40.000 0.00 0.00 29.68 2.01
1072 1077 6.709397 GCCTACTTACCATACCAGTAAAATCC 59.291 42.308 0.00 0.00 29.68 3.01
1136 1143 8.782533 AAAAACAACTAGCTTTTACATCTTCG 57.217 30.769 0.00 0.00 0.00 3.79
1137 1144 7.724305 AAACAACTAGCTTTTACATCTTCGA 57.276 32.000 0.00 0.00 0.00 3.71
1138 1145 6.952935 ACAACTAGCTTTTACATCTTCGAG 57.047 37.500 0.00 0.00 0.00 4.04
1139 1146 5.869888 ACAACTAGCTTTTACATCTTCGAGG 59.130 40.000 0.00 0.00 0.00 4.63
1140 1147 4.434520 ACTAGCTTTTACATCTTCGAGGC 58.565 43.478 0.00 0.00 0.00 4.70
1141 1148 2.633488 AGCTTTTACATCTTCGAGGCC 58.367 47.619 0.00 0.00 0.00 5.19
1142 1149 2.027192 AGCTTTTACATCTTCGAGGCCA 60.027 45.455 5.01 0.00 0.00 5.36
1143 1150 2.747446 GCTTTTACATCTTCGAGGCCAA 59.253 45.455 5.01 0.00 0.00 4.52
1144 1151 3.190535 GCTTTTACATCTTCGAGGCCAAA 59.809 43.478 5.01 0.00 0.00 3.28
1145 1152 4.320935 GCTTTTACATCTTCGAGGCCAAAA 60.321 41.667 5.01 0.00 0.00 2.44
1146 1153 5.768317 CTTTTACATCTTCGAGGCCAAAAA 58.232 37.500 5.01 0.00 0.00 1.94
1147 1154 5.371115 TTTACATCTTCGAGGCCAAAAAG 57.629 39.130 5.01 5.01 0.00 2.27
1148 1155 1.541588 ACATCTTCGAGGCCAAAAAGC 59.458 47.619 5.01 0.00 0.00 3.51
1157 1164 2.056985 GCCAAAAAGCCATCCACCA 58.943 52.632 0.00 0.00 0.00 4.17
1158 1165 0.037046 GCCAAAAAGCCATCCACCAG 60.037 55.000 0.00 0.00 0.00 4.00
1159 1166 1.341080 CCAAAAAGCCATCCACCAGT 58.659 50.000 0.00 0.00 0.00 4.00
1170 1177 4.202357 GCCATCCACCAGTTGATGTAGATA 60.202 45.833 10.07 0.00 37.30 1.98
1174 1181 7.821359 CCATCCACCAGTTGATGTAGATATAAG 59.179 40.741 10.07 0.00 37.30 1.73
1209 1216 4.023193 CACCTGACCCAAGTGATGTAAAAC 60.023 45.833 0.00 0.00 33.21 2.43
1211 1218 4.216257 CCTGACCCAAGTGATGTAAAACAG 59.784 45.833 0.00 0.00 0.00 3.16
1216 1223 5.833131 ACCCAAGTGATGTAAAACAGAACAT 59.167 36.000 0.00 0.00 39.00 2.71
1233 1240 6.882610 AGAACATCTGAACATGCAAACTTA 57.117 33.333 0.00 0.00 0.00 2.24
1239 1246 6.882610 TCTGAACATGCAAACTTACATCTT 57.117 33.333 0.00 0.00 0.00 2.40
1245 1252 5.536161 ACATGCAAACTTACATCTTCACCTT 59.464 36.000 0.00 0.00 0.00 3.50
1248 1255 5.008613 TGCAAACTTACATCTTCACCTTCAC 59.991 40.000 0.00 0.00 0.00 3.18
1249 1256 5.679906 CAAACTTACATCTTCACCTTCACG 58.320 41.667 0.00 0.00 0.00 4.35
1250 1257 4.602340 ACTTACATCTTCACCTTCACGT 57.398 40.909 0.00 0.00 0.00 4.49
1251 1258 4.307432 ACTTACATCTTCACCTTCACGTG 58.693 43.478 9.94 9.94 34.93 4.49
1252 1259 4.038763 ACTTACATCTTCACCTTCACGTGA 59.961 41.667 15.76 15.76 40.98 4.35
1253 1260 3.685139 ACATCTTCACCTTCACGTGAT 57.315 42.857 20.80 0.76 42.20 3.06
1254 1261 3.329386 ACATCTTCACCTTCACGTGATG 58.671 45.455 20.80 21.05 42.20 3.07
1255 1262 3.244215 ACATCTTCACCTTCACGTGATGT 60.244 43.478 20.80 16.64 42.20 3.06
1256 1263 4.021456 ACATCTTCACCTTCACGTGATGTA 60.021 41.667 20.80 7.89 42.20 2.29
1257 1264 4.594123 TCTTCACCTTCACGTGATGTAA 57.406 40.909 20.80 13.39 42.20 2.41
1258 1265 4.951254 TCTTCACCTTCACGTGATGTAAA 58.049 39.130 20.80 11.17 42.20 2.01
1259 1266 5.361427 TCTTCACCTTCACGTGATGTAAAA 58.639 37.500 20.80 14.73 42.20 1.52
1260 1267 5.235616 TCTTCACCTTCACGTGATGTAAAAC 59.764 40.000 20.80 0.00 42.20 2.43
1261 1268 3.491639 TCACCTTCACGTGATGTAAAACG 59.508 43.478 20.80 9.93 45.15 3.60
1262 1269 2.803956 ACCTTCACGTGATGTAAAACGG 59.196 45.455 20.80 11.55 43.96 4.44
1263 1270 2.412325 CCTTCACGTGATGTAAAACGGC 60.412 50.000 20.80 0.00 43.96 5.68
1264 1271 2.157834 TCACGTGATGTAAAACGGCT 57.842 45.000 15.76 0.00 43.96 5.52
1265 1272 1.795872 TCACGTGATGTAAAACGGCTG 59.204 47.619 15.76 0.00 43.96 4.85
1266 1273 1.136085 CACGTGATGTAAAACGGCTGG 60.136 52.381 10.90 0.00 43.96 4.85
1267 1274 1.153353 CGTGATGTAAAACGGCTGGT 58.847 50.000 0.00 0.00 36.17 4.00
1268 1275 1.127951 CGTGATGTAAAACGGCTGGTC 59.872 52.381 0.00 0.00 36.17 4.02
1269 1276 1.127951 GTGATGTAAAACGGCTGGTCG 59.872 52.381 0.00 0.00 0.00 4.79
1270 1277 0.096454 GATGTAAAACGGCTGGTCGC 59.904 55.000 0.00 0.00 38.13 5.19
1271 1278 1.632046 ATGTAAAACGGCTGGTCGCG 61.632 55.000 0.00 0.00 40.44 5.87
1272 1279 3.416382 TAAAACGGCTGGTCGCGC 61.416 61.111 0.00 0.00 40.44 6.86
1280 1287 3.767230 CTGGTCGCGCGTCAACTG 61.767 66.667 30.98 14.41 0.00 3.16
1281 1288 4.578898 TGGTCGCGCGTCAACTGT 62.579 61.111 30.98 0.00 0.00 3.55
1290 1297 2.715268 CGCGTCAACTGTTGTTCATTT 58.285 42.857 19.12 0.00 33.52 2.32
1295 1302 5.288472 GCGTCAACTGTTGTTCATTTCTTTT 59.712 36.000 19.12 0.00 33.52 2.27
1297 1304 6.020678 CGTCAACTGTTGTTCATTTCTTTTCC 60.021 38.462 19.12 0.00 33.52 3.13
1298 1305 7.035612 GTCAACTGTTGTTCATTTCTTTTCCT 58.964 34.615 19.12 0.00 33.52 3.36
1299 1306 7.220875 GTCAACTGTTGTTCATTTCTTTTCCTC 59.779 37.037 19.12 0.00 33.52 3.71
1303 1310 5.163457 TGTTGTTCATTTCTTTTCCTCCCAC 60.163 40.000 0.00 0.00 0.00 4.61
1306 1313 1.202348 CATTTCTTTTCCTCCCACCGC 59.798 52.381 0.00 0.00 0.00 5.68
1309 1316 4.257654 TTTTCCTCCCACCGCGCA 62.258 61.111 8.75 0.00 0.00 6.09
1315 1322 4.812476 TCCCACCGCGCATCTTCG 62.812 66.667 8.75 0.00 0.00 3.79
1320 1327 2.509336 CCGCGCATCTTCGTCCTT 60.509 61.111 8.75 0.00 0.00 3.36
1369 1376 4.108299 CCCAGCCACCGCACCATA 62.108 66.667 0.00 0.00 37.52 2.74
1370 1377 2.824041 CCAGCCACCGCACCATAC 60.824 66.667 0.00 0.00 37.52 2.39
1371 1378 2.268920 CAGCCACCGCACCATACT 59.731 61.111 0.00 0.00 37.52 2.12
1372 1379 2.108514 CAGCCACCGCACCATACTG 61.109 63.158 0.00 0.00 37.52 2.74
1373 1380 3.508840 GCCACCGCACCATACTGC 61.509 66.667 0.00 0.00 34.03 4.40
1379 1386 3.564027 GCACCATACTGCGGTCGC 61.564 66.667 0.00 8.54 42.35 5.19
1380 1387 2.890474 CACCATACTGCGGTCGCC 60.890 66.667 12.94 0.00 41.09 5.54
1381 1388 4.157120 ACCATACTGCGGTCGCCC 62.157 66.667 12.94 0.00 41.09 6.13
1382 1389 4.910585 CCATACTGCGGTCGCCCC 62.911 72.222 12.94 0.00 41.09 5.80
1395 1402 2.569134 GCCCCGCGCTAGATCTAG 59.431 66.667 23.20 23.20 36.29 2.43
1404 1411 3.896317 CTAGATCTAGCCGCCAACC 57.104 57.895 16.68 0.00 0.00 3.77
1405 1412 1.040646 CTAGATCTAGCCGCCAACCA 58.959 55.000 16.68 0.00 0.00 3.67
1406 1413 0.750850 TAGATCTAGCCGCCAACCAC 59.249 55.000 0.00 0.00 0.00 4.16
1407 1414 1.523938 GATCTAGCCGCCAACCACC 60.524 63.158 0.00 0.00 0.00 4.61
1408 1415 2.942648 GATCTAGCCGCCAACCACCC 62.943 65.000 0.00 0.00 0.00 4.61
1409 1416 4.796495 CTAGCCGCCAACCACCCC 62.796 72.222 0.00 0.00 0.00 4.95
1434 1441 3.577313 GCCCGCTCGCCTTGAATC 61.577 66.667 0.00 0.00 0.00 2.52
1435 1442 3.264897 CCCGCTCGCCTTGAATCG 61.265 66.667 0.00 0.00 0.00 3.34
1436 1443 3.264897 CCGCTCGCCTTGAATCGG 61.265 66.667 0.00 0.00 36.75 4.18
1437 1444 3.929948 CGCTCGCCTTGAATCGGC 61.930 66.667 0.00 0.00 44.11 5.54
1438 1445 3.577313 GCTCGCCTTGAATCGGCC 61.577 66.667 0.00 0.00 44.73 6.13
1439 1446 2.897350 CTCGCCTTGAATCGGCCC 60.897 66.667 0.00 0.00 44.73 5.80
1440 1447 4.483243 TCGCCTTGAATCGGCCCC 62.483 66.667 0.00 0.00 44.73 5.80
1459 1466 1.012234 GATTCGCCATCGTTGTCGC 60.012 57.895 0.00 0.00 36.96 5.19
1460 1467 2.361427 GATTCGCCATCGTTGTCGCC 62.361 60.000 0.00 0.00 36.96 5.54
1461 1468 3.867700 TTCGCCATCGTTGTCGCCA 62.868 57.895 0.00 0.00 36.96 5.69
1462 1469 4.147322 CGCCATCGTTGTCGCCAC 62.147 66.667 0.00 0.00 36.96 5.01
1463 1470 3.799755 GCCATCGTTGTCGCCACC 61.800 66.667 0.00 0.00 36.96 4.61
1464 1471 3.124921 CCATCGTTGTCGCCACCC 61.125 66.667 0.00 0.00 36.96 4.61
1465 1472 3.487202 CATCGTTGTCGCCACCCG 61.487 66.667 0.00 0.00 36.96 5.28
1466 1473 4.752879 ATCGTTGTCGCCACCCGG 62.753 66.667 0.00 0.00 37.59 5.73
1469 1476 3.351416 GTTGTCGCCACCCGGTTC 61.351 66.667 0.00 0.00 37.59 3.62
1470 1477 3.552384 TTGTCGCCACCCGGTTCT 61.552 61.111 0.00 0.00 37.59 3.01
1471 1478 3.524648 TTGTCGCCACCCGGTTCTC 62.525 63.158 0.00 0.00 37.59 2.87
1472 1479 4.754667 GTCGCCACCCGGTTCTCC 62.755 72.222 0.00 0.00 37.59 3.71
1475 1482 4.717313 GCCACCCGGTTCTCCACC 62.717 72.222 0.00 0.00 43.16 4.61
1482 1489 4.617875 GGTTCTCCACCACCATCG 57.382 61.111 0.00 0.00 46.42 3.84
1483 1490 1.745489 GGTTCTCCACCACCATCGC 60.745 63.158 0.00 0.00 46.42 4.58
1484 1491 1.745489 GTTCTCCACCACCATCGCC 60.745 63.158 0.00 0.00 0.00 5.54
1485 1492 2.966732 TTCTCCACCACCATCGCCC 61.967 63.158 0.00 0.00 0.00 6.13
1486 1493 4.838152 CTCCACCACCATCGCCCG 62.838 72.222 0.00 0.00 0.00 6.13
1488 1495 4.175337 CCACCACCATCGCCCGAT 62.175 66.667 0.00 0.00 34.81 4.18
1489 1496 2.124736 CACCACCATCGCCCGATT 60.125 61.111 0.00 0.00 31.62 3.34
1490 1497 2.180204 CACCACCATCGCCCGATTC 61.180 63.158 0.00 0.00 31.62 2.52
1491 1498 2.189257 CCACCATCGCCCGATTCA 59.811 61.111 0.00 0.00 31.62 2.57
1492 1499 1.227943 CCACCATCGCCCGATTCAT 60.228 57.895 0.00 0.00 31.62 2.57
1493 1500 1.230635 CCACCATCGCCCGATTCATC 61.231 60.000 0.00 0.00 31.62 2.92
1494 1501 0.532640 CACCATCGCCCGATTCATCA 60.533 55.000 0.00 0.00 31.62 3.07
1495 1502 0.532862 ACCATCGCCCGATTCATCAC 60.533 55.000 0.00 0.00 31.62 3.06
1496 1503 1.230635 CCATCGCCCGATTCATCACC 61.231 60.000 0.00 0.00 31.62 4.02
1497 1504 1.300931 ATCGCCCGATTCATCACCG 60.301 57.895 0.00 0.00 0.00 4.94
1498 1505 3.640000 CGCCCGATTCATCACCGC 61.640 66.667 0.00 0.00 0.00 5.68
1499 1506 3.279875 GCCCGATTCATCACCGCC 61.280 66.667 0.00 0.00 0.00 6.13
1500 1507 2.189257 CCCGATTCATCACCGCCA 59.811 61.111 0.00 0.00 0.00 5.69
1501 1508 1.451207 CCCGATTCATCACCGCCAA 60.451 57.895 0.00 0.00 0.00 4.52
1502 1509 1.439353 CCCGATTCATCACCGCCAAG 61.439 60.000 0.00 0.00 0.00 3.61
1503 1510 1.353103 CGATTCATCACCGCCAAGC 59.647 57.895 0.00 0.00 0.00 4.01
1504 1511 1.729881 GATTCATCACCGCCAAGCC 59.270 57.895 0.00 0.00 0.00 4.35
1505 1512 1.728490 GATTCATCACCGCCAAGCCC 61.728 60.000 0.00 0.00 0.00 5.19
1506 1513 3.936772 TTCATCACCGCCAAGCCCC 62.937 63.158 0.00 0.00 0.00 5.80
1515 1522 4.052518 CCAAGCCCCCACCCTGAG 62.053 72.222 0.00 0.00 0.00 3.35
1516 1523 4.748144 CAAGCCCCCACCCTGAGC 62.748 72.222 0.00 0.00 0.00 4.26
1549 1556 4.416738 GCCCACCACCAGGCTCTC 62.417 72.222 0.00 0.00 46.14 3.20
1550 1557 4.087892 CCCACCACCAGGCTCTCG 62.088 72.222 0.00 0.00 39.06 4.04
1551 1558 2.997315 CCACCACCAGGCTCTCGA 60.997 66.667 0.00 0.00 39.06 4.04
1552 1559 2.262915 CACCACCAGGCTCTCGAC 59.737 66.667 0.00 0.00 39.06 4.20
1553 1560 2.997897 ACCACCAGGCTCTCGACC 60.998 66.667 0.00 0.00 39.06 4.79
1554 1561 3.775654 CCACCAGGCTCTCGACCC 61.776 72.222 0.00 0.00 0.00 4.46
1555 1562 4.135153 CACCAGGCTCTCGACCCG 62.135 72.222 0.00 0.00 0.00 5.28
1556 1563 4.361971 ACCAGGCTCTCGACCCGA 62.362 66.667 0.00 0.00 0.00 5.14
2028 2035 2.588877 CGCCGCCCGATTCTCAAT 60.589 61.111 0.00 0.00 40.02 2.57
2029 2036 2.180204 CGCCGCCCGATTCTCAATT 61.180 57.895 0.00 0.00 40.02 2.32
2031 2038 1.376609 GCCGCCCGATTCTCAATTGT 61.377 55.000 5.13 0.00 0.00 2.71
2032 2039 1.094785 CCGCCCGATTCTCAATTGTT 58.905 50.000 5.13 0.00 0.00 2.83
2050 2061 2.107041 TTGTCGCCCGATTCACCACT 62.107 55.000 0.00 0.00 0.00 4.00
2112 2143 4.742201 CCACGCTACTGCCGCTGT 62.742 66.667 8.09 8.09 35.36 4.40
2113 2144 3.481903 CACGCTACTGCCGCTGTG 61.482 66.667 12.77 4.71 35.36 3.66
2126 2157 0.179171 CGCTGTGTAGATTCGACCGT 60.179 55.000 0.00 0.00 0.00 4.83
2129 2160 1.129998 CTGTGTAGATTCGACCGTCGT 59.870 52.381 19.89 2.10 41.35 4.34
2201 2232 1.135170 CGAAGAGTAAGACGGGGTTCC 60.135 57.143 0.00 0.00 0.00 3.62
2250 2281 0.174845 TTCGGCATGGAGTTCTACGG 59.825 55.000 0.00 0.00 0.00 4.02
2373 2529 3.624861 AGCAATTTACTCTCTTGCATCCG 59.375 43.478 8.94 0.00 45.93 4.18
2469 2628 3.010420 GAGCAAGAAATTAAGCTCGGGT 58.990 45.455 0.00 0.00 43.27 5.28
2474 2633 5.504173 GCAAGAAATTAAGCTCGGGTGTATC 60.504 44.000 0.00 0.00 0.00 2.24
2505 2665 6.441274 AGCTCACACAACAATTGTTCATTAG 58.559 36.000 20.85 14.60 43.23 1.73
2591 2760 9.689075 CAACTAATCGACAATTATACACAACAG 57.311 33.333 0.00 0.00 0.00 3.16
2593 2762 8.255206 ACTAATCGACAATTATACACAACAGGA 58.745 33.333 0.00 0.00 0.00 3.86
2612 2781 6.306987 ACAGGACAACCAATTGAAATAGACT 58.693 36.000 7.12 0.00 39.30 3.24
2632 2801 7.510549 AGACTGCACACAAAATAAACATAGT 57.489 32.000 0.00 0.00 0.00 2.12
2658 2827 5.812286 ACTTAACCCACAACCGAAGAATAT 58.188 37.500 0.00 0.00 0.00 1.28
2659 2828 6.949715 ACTTAACCCACAACCGAAGAATATA 58.050 36.000 0.00 0.00 0.00 0.86
2697 2866 5.563671 GCGTCATGCTCTAGTATCTCATTCA 60.564 44.000 0.00 0.00 41.73 2.57
2800 2971 4.873746 AGAAATTGAAGTCGTCTCTCCA 57.126 40.909 0.00 0.00 0.00 3.86
2938 3583 5.224888 ACACAGAAAGCACATGCATTTTAG 58.775 37.500 6.64 0.00 45.16 1.85
2960 3640 2.492019 TGCTCGATTCCATGTACTCG 57.508 50.000 0.00 0.00 0.00 4.18
2980 3660 6.235664 ACTCGTTTTTCCACCATAACACTAT 58.764 36.000 0.00 0.00 0.00 2.12
2989 3669 4.096382 CCACCATAACACTATCTTGCCAAC 59.904 45.833 0.00 0.00 0.00 3.77
2999 3679 0.178992 TCTTGCCAACTGAAGTGGGG 60.179 55.000 6.01 1.97 39.59 4.96
3099 3942 7.615582 TTCAAGATATTTGCTGACTTCGAAT 57.384 32.000 0.00 0.00 0.00 3.34
3108 3951 3.068732 TGCTGACTTCGAATAGGAGATGG 59.931 47.826 0.00 0.00 0.00 3.51
3114 3957 4.956700 ACTTCGAATAGGAGATGGAAGACA 59.043 41.667 0.00 0.00 35.90 3.41
3131 3974 6.423905 TGGAAGACAAAACTCACGAAGAATAG 59.576 38.462 0.00 0.00 0.00 1.73
3135 3978 4.691216 ACAAAACTCACGAAGAATAGAGGC 59.309 41.667 0.00 0.00 32.52 4.70
3175 5068 0.912486 AAGTAAGGCTCCGGCAGAAT 59.088 50.000 0.00 0.00 40.87 2.40
3235 5128 9.778741 ATTCACTGATAGTCTTTGTGAACTAAA 57.221 29.630 8.67 0.00 46.02 1.85
3236 5129 8.589335 TCACTGATAGTCTTTGTGAACTAAAC 57.411 34.615 0.00 0.00 35.15 2.01
3239 5132 7.873505 ACTGATAGTCTTTGTGAACTAAACTCC 59.126 37.037 0.00 0.00 0.00 3.85
3240 5133 7.159372 TGATAGTCTTTGTGAACTAAACTCCC 58.841 38.462 0.00 0.00 0.00 4.30
3241 5134 5.632034 AGTCTTTGTGAACTAAACTCCCT 57.368 39.130 0.00 0.00 0.00 4.20
3242 5135 6.002653 AGTCTTTGTGAACTAAACTCCCTT 57.997 37.500 0.00 0.00 0.00 3.95
3330 5284 2.280835 CAGGCCAGACTGCTACTGA 58.719 57.895 5.01 0.00 37.54 3.41
3362 5316 7.807977 ATTTTGTAGATAAACCATGCTCGAT 57.192 32.000 0.00 0.00 0.00 3.59
3364 5318 5.529581 TGTAGATAAACCATGCTCGATGA 57.470 39.130 0.00 0.00 33.31 2.92
3415 5369 0.179009 TAGTAGGCGTAGGTGGCGAT 60.179 55.000 0.00 0.00 39.82 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 167 3.071479 GTGACAGAAGCATAAACCCGAA 58.929 45.455 0.00 0.00 0.00 4.30
264 267 2.026636 GGTGTTGTCCTATTGTGCCCTA 60.027 50.000 0.00 0.00 0.00 3.53
398 401 3.766545 ACTGGAACATGGTGCTTTATGT 58.233 40.909 3.18 0.00 38.20 2.29
416 419 1.835531 ACCCCGTTGTAATCCCTACTG 59.164 52.381 0.00 0.00 0.00 2.74
500 503 0.949105 AATTATCGCCGCGGTGATCC 60.949 55.000 46.97 22.37 43.35 3.36
516 519 0.259938 GTGCCATCAGGAGGGGAATT 59.740 55.000 1.81 0.00 33.56 2.17
527 530 3.928754 ACCTCTCCTATAAGTGCCATCA 58.071 45.455 0.00 0.00 0.00 3.07
537 540 1.134007 TCGACGCCAACCTCTCCTATA 60.134 52.381 0.00 0.00 0.00 1.31
538 541 0.395311 TCGACGCCAACCTCTCCTAT 60.395 55.000 0.00 0.00 0.00 2.57
539 542 1.001764 TCGACGCCAACCTCTCCTA 60.002 57.895 0.00 0.00 0.00 2.94
540 543 2.282958 TCGACGCCAACCTCTCCT 60.283 61.111 0.00 0.00 0.00 3.69
541 544 2.182030 CTCGACGCCAACCTCTCC 59.818 66.667 0.00 0.00 0.00 3.71
542 545 1.137825 CTCTCGACGCCAACCTCTC 59.862 63.158 0.00 0.00 0.00 3.20
543 546 2.995872 GCTCTCGACGCCAACCTCT 61.996 63.158 0.00 0.00 0.00 3.69
544 547 2.507324 GCTCTCGACGCCAACCTC 60.507 66.667 0.00 0.00 0.00 3.85
545 548 2.771763 CTTGCTCTCGACGCCAACCT 62.772 60.000 0.00 0.00 0.00 3.50
546 549 2.357034 TTGCTCTCGACGCCAACC 60.357 61.111 0.00 0.00 0.00 3.77
547 550 1.222115 AACTTGCTCTCGACGCCAAC 61.222 55.000 0.00 0.00 0.00 3.77
548 551 0.315886 TAACTTGCTCTCGACGCCAA 59.684 50.000 0.00 0.00 0.00 4.52
549 552 0.109272 CTAACTTGCTCTCGACGCCA 60.109 55.000 0.00 0.00 0.00 5.69
550 553 0.802607 CCTAACTTGCTCTCGACGCC 60.803 60.000 0.00 0.00 0.00 5.68
551 554 0.802607 CCCTAACTTGCTCTCGACGC 60.803 60.000 0.00 0.00 0.00 5.19
552 555 0.179134 CCCCTAACTTGCTCTCGACG 60.179 60.000 0.00 0.00 0.00 5.12
553 556 0.175989 CCCCCTAACTTGCTCTCGAC 59.824 60.000 0.00 0.00 0.00 4.20
554 557 1.614241 GCCCCCTAACTTGCTCTCGA 61.614 60.000 0.00 0.00 0.00 4.04
555 558 1.153349 GCCCCCTAACTTGCTCTCG 60.153 63.158 0.00 0.00 0.00 4.04
556 559 1.224870 GGCCCCCTAACTTGCTCTC 59.775 63.158 0.00 0.00 0.00 3.20
557 560 2.309504 GGGCCCCCTAACTTGCTCT 61.310 63.158 12.23 0.00 0.00 4.09
558 561 2.275748 GGGCCCCCTAACTTGCTC 59.724 66.667 12.23 0.00 0.00 4.26
559 562 3.347590 GGGGCCCCCTAACTTGCT 61.348 66.667 33.01 0.00 41.34 3.91
560 563 3.662117 CTGGGGCCCCCTAACTTGC 62.662 68.421 38.81 10.43 45.70 4.01
561 564 2.683475 CTGGGGCCCCCTAACTTG 59.317 66.667 38.81 14.82 45.70 3.16
562 565 2.617215 CCTGGGGCCCCCTAACTT 60.617 66.667 38.81 0.00 45.70 2.66
563 566 4.779486 CCCTGGGGCCCCCTAACT 62.779 72.222 38.81 0.00 45.70 2.24
572 575 4.048470 GTGGACTTCCCCTGGGGC 62.048 72.222 27.93 12.81 43.94 5.80
573 576 3.717294 CGTGGACTTCCCCTGGGG 61.717 72.222 26.87 26.87 46.11 4.96
574 577 2.606519 TCGTGGACTTCCCCTGGG 60.607 66.667 5.50 5.50 34.29 4.45
575 578 2.660064 CCTCGTGGACTTCCCCTGG 61.660 68.421 0.00 0.00 34.57 4.45
576 579 2.982130 CCTCGTGGACTTCCCCTG 59.018 66.667 0.00 0.00 34.57 4.45
577 580 3.003763 GCCTCGTGGACTTCCCCT 61.004 66.667 7.92 0.00 34.57 4.79
578 581 3.319198 TGCCTCGTGGACTTCCCC 61.319 66.667 7.92 0.00 34.57 4.81
579 582 2.047179 GTGCCTCGTGGACTTCCC 60.047 66.667 7.92 0.00 34.57 3.97
580 583 1.374758 CTGTGCCTCGTGGACTTCC 60.375 63.158 7.92 0.00 34.57 3.46
581 584 1.374758 CCTGTGCCTCGTGGACTTC 60.375 63.158 7.92 0.00 34.57 3.01
582 585 2.743718 CCTGTGCCTCGTGGACTT 59.256 61.111 7.92 0.00 34.57 3.01
583 586 3.314331 CCCTGTGCCTCGTGGACT 61.314 66.667 7.92 0.00 34.57 3.85
584 587 4.394712 CCCCTGTGCCTCGTGGAC 62.395 72.222 7.92 3.62 34.57 4.02
621 624 4.181010 CTCATGAGGGTGGGGGCG 62.181 72.222 15.38 0.00 0.00 6.13
622 625 3.813724 CCTCATGAGGGTGGGGGC 61.814 72.222 31.14 0.00 44.87 5.80
631 634 3.083349 TCCCGTGGGCCTCATGAG 61.083 66.667 16.24 16.24 34.35 2.90
632 635 3.399181 GTCCCGTGGGCCTCATGA 61.399 66.667 4.53 0.00 34.35 3.07
633 636 3.391665 GAGTCCCGTGGGCCTCATG 62.392 68.421 11.04 4.47 34.68 3.07
634 637 3.083997 GAGTCCCGTGGGCCTCAT 61.084 66.667 11.04 0.00 34.68 2.90
646 649 2.480642 AATCTACCAGAGGGGAGTCC 57.519 55.000 0.00 0.00 46.30 3.85
647 650 4.471747 AGAAAAATCTACCAGAGGGGAGTC 59.528 45.833 0.00 0.00 46.30 3.36
648 651 4.439860 AGAAAAATCTACCAGAGGGGAGT 58.560 43.478 0.00 0.00 46.30 3.85
649 652 9.690853 CTGGAAGAAAAATCTACCAGAGGGGAG 62.691 48.148 0.00 0.00 45.02 4.30
650 653 4.227527 GGAAGAAAAATCTACCAGAGGGGA 59.772 45.833 0.00 0.00 41.15 4.81
651 654 4.018415 TGGAAGAAAAATCTACCAGAGGGG 60.018 45.833 0.00 0.00 44.81 4.79
652 655 5.179452 TGGAAGAAAAATCTACCAGAGGG 57.821 43.478 0.00 0.00 41.29 4.30
653 656 5.810095 ACTGGAAGAAAAATCTACCAGAGG 58.190 41.667 16.21 0.00 45.02 3.69
654 657 9.454859 AAATACTGGAAGAAAAATCTACCAGAG 57.545 33.333 16.21 0.00 45.02 3.35
655 658 9.807921 AAAATACTGGAAGAAAAATCTACCAGA 57.192 29.630 16.21 2.79 45.02 3.86
684 687 8.802267 TCAACGGAGAATTTTTCTGGAAAATAT 58.198 29.630 7.07 0.03 44.98 1.28
685 688 8.172352 TCAACGGAGAATTTTTCTGGAAAATA 57.828 30.769 7.07 2.53 44.98 1.40
687 690 6.458232 TCAACGGAGAATTTTTCTGGAAAA 57.542 33.333 4.61 4.61 40.87 2.29
688 691 6.648879 ATCAACGGAGAATTTTTCTGGAAA 57.351 33.333 0.00 0.00 40.87 3.13
689 692 6.648879 AATCAACGGAGAATTTTTCTGGAA 57.351 33.333 0.00 0.00 40.87 3.53
690 693 6.648879 AAATCAACGGAGAATTTTTCTGGA 57.351 33.333 0.00 0.00 40.87 3.86
691 694 6.922957 TGAAAATCAACGGAGAATTTTTCTGG 59.077 34.615 14.04 0.00 40.87 3.86
692 695 7.928908 TGAAAATCAACGGAGAATTTTTCTG 57.071 32.000 14.04 0.00 40.87 3.02
693 696 7.538678 CGATGAAAATCAACGGAGAATTTTTCT 59.461 33.333 14.04 0.00 38.71 2.52
694 697 7.657364 CGATGAAAATCAACGGAGAATTTTTC 58.343 34.615 2.54 9.43 38.71 2.29
695 698 6.089417 GCGATGAAAATCAACGGAGAATTTTT 59.911 34.615 11.14 0.00 41.93 1.94
696 699 5.572896 GCGATGAAAATCAACGGAGAATTTT 59.427 36.000 11.14 0.00 41.93 1.82
697 700 5.095490 GCGATGAAAATCAACGGAGAATTT 58.905 37.500 11.14 0.00 41.93 1.82
698 701 4.155826 TGCGATGAAAATCAACGGAGAATT 59.844 37.500 11.14 0.00 41.93 2.17
699 702 3.689161 TGCGATGAAAATCAACGGAGAAT 59.311 39.130 11.14 0.00 41.93 2.40
700 703 3.070748 TGCGATGAAAATCAACGGAGAA 58.929 40.909 11.14 0.00 41.93 2.87
701 704 2.694213 TGCGATGAAAATCAACGGAGA 58.306 42.857 11.14 0.00 41.93 3.71
702 705 3.680642 ATGCGATGAAAATCAACGGAG 57.319 42.857 11.14 0.00 44.68 4.63
703 706 3.181501 GGAATGCGATGAAAATCAACGGA 60.182 43.478 11.14 9.00 45.40 4.69
704 707 3.108144 GGAATGCGATGAAAATCAACGG 58.892 45.455 11.14 0.00 41.93 4.44
705 708 2.777845 CGGAATGCGATGAAAATCAACG 59.222 45.455 5.76 5.76 44.02 4.10
706 709 4.014847 TCGGAATGCGATGAAAATCAAC 57.985 40.909 0.00 0.00 0.00 3.18
707 710 3.938334 TCTCGGAATGCGATGAAAATCAA 59.062 39.130 0.00 0.00 0.00 2.57
708 711 3.530535 TCTCGGAATGCGATGAAAATCA 58.469 40.909 0.00 0.00 0.00 2.57
709 712 4.034510 AGTTCTCGGAATGCGATGAAAATC 59.965 41.667 0.00 0.00 0.00 2.17
710 713 3.941483 AGTTCTCGGAATGCGATGAAAAT 59.059 39.130 0.00 0.00 0.00 1.82
711 714 3.334691 AGTTCTCGGAATGCGATGAAAA 58.665 40.909 0.00 0.00 0.00 2.29
712 715 2.972625 AGTTCTCGGAATGCGATGAAA 58.027 42.857 0.00 0.00 0.00 2.69
713 716 2.672961 AGTTCTCGGAATGCGATGAA 57.327 45.000 0.00 1.20 0.00 2.57
714 717 2.672961 AAGTTCTCGGAATGCGATGA 57.327 45.000 0.00 0.00 0.00 2.92
715 718 3.747099 AAAAGTTCTCGGAATGCGATG 57.253 42.857 0.00 0.00 0.00 3.84
716 719 6.436843 AAATAAAAGTTCTCGGAATGCGAT 57.563 33.333 0.00 0.00 0.00 4.58
717 720 5.873179 AAATAAAAGTTCTCGGAATGCGA 57.127 34.783 0.00 0.00 0.00 5.10
718 721 6.927933 AAAAATAAAAGTTCTCGGAATGCG 57.072 33.333 0.00 0.00 0.00 4.73
719 722 8.635983 GTGTAAAAATAAAAGTTCTCGGAATGC 58.364 33.333 0.00 0.00 0.00 3.56
720 723 9.672086 TGTGTAAAAATAAAAGTTCTCGGAATG 57.328 29.630 0.00 0.00 0.00 2.67
733 736 8.433126 CGTGGTGTTGTTTTGTGTAAAAATAAA 58.567 29.630 0.00 0.00 37.51 1.40
734 737 7.063074 CCGTGGTGTTGTTTTGTGTAAAAATAA 59.937 33.333 0.00 0.00 37.51 1.40
735 738 6.530534 CCGTGGTGTTGTTTTGTGTAAAAATA 59.469 34.615 0.00 0.00 37.51 1.40
736 739 5.348997 CCGTGGTGTTGTTTTGTGTAAAAAT 59.651 36.000 0.00 0.00 37.51 1.82
737 740 4.684703 CCGTGGTGTTGTTTTGTGTAAAAA 59.315 37.500 0.00 0.00 37.51 1.94
738 741 4.235360 CCGTGGTGTTGTTTTGTGTAAAA 58.765 39.130 0.00 0.00 33.57 1.52
739 742 3.255149 ACCGTGGTGTTGTTTTGTGTAAA 59.745 39.130 0.00 0.00 0.00 2.01
740 743 2.818432 ACCGTGGTGTTGTTTTGTGTAA 59.182 40.909 0.00 0.00 0.00 2.41
741 744 2.434428 ACCGTGGTGTTGTTTTGTGTA 58.566 42.857 0.00 0.00 0.00 2.90
742 745 1.249407 ACCGTGGTGTTGTTTTGTGT 58.751 45.000 0.00 0.00 0.00 3.72
743 746 2.420722 ACTACCGTGGTGTTGTTTTGTG 59.579 45.455 0.72 0.00 0.00 3.33
744 747 2.713877 ACTACCGTGGTGTTGTTTTGT 58.286 42.857 0.72 0.00 0.00 2.83
745 748 3.375922 AGAACTACCGTGGTGTTGTTTTG 59.624 43.478 0.72 0.00 34.98 2.44
746 749 3.375922 CAGAACTACCGTGGTGTTGTTTT 59.624 43.478 0.72 0.00 34.98 2.43
747 750 2.940410 CAGAACTACCGTGGTGTTGTTT 59.060 45.455 0.72 0.00 34.98 2.83
748 751 2.557317 CAGAACTACCGTGGTGTTGTT 58.443 47.619 0.72 4.41 37.00 2.83
749 752 1.808891 GCAGAACTACCGTGGTGTTGT 60.809 52.381 0.72 0.55 0.00 3.32
750 753 0.865769 GCAGAACTACCGTGGTGTTG 59.134 55.000 0.72 0.00 0.00 3.33
751 754 0.756903 AGCAGAACTACCGTGGTGTT 59.243 50.000 0.72 4.35 0.00 3.32
752 755 0.033504 CAGCAGAACTACCGTGGTGT 59.966 55.000 0.72 0.00 35.45 4.16
753 756 0.317160 TCAGCAGAACTACCGTGGTG 59.683 55.000 0.72 0.00 40.32 4.17
754 757 1.045407 TTCAGCAGAACTACCGTGGT 58.955 50.000 0.00 0.00 0.00 4.16
755 758 2.163818 TTTCAGCAGAACTACCGTGG 57.836 50.000 0.00 0.00 32.39 4.94
756 759 2.869801 TGTTTTCAGCAGAACTACCGTG 59.130 45.455 0.00 0.00 32.39 4.94
757 760 3.131396 CTGTTTTCAGCAGAACTACCGT 58.869 45.455 0.00 0.00 41.24 4.83
758 761 3.795561 CTGTTTTCAGCAGAACTACCG 57.204 47.619 0.00 0.00 41.24 4.02
770 773 2.250939 CGGACTGGCGCTGTTTTCA 61.251 57.895 7.64 0.00 0.00 2.69
771 774 2.556287 CGGACTGGCGCTGTTTTC 59.444 61.111 7.64 0.00 0.00 2.29
772 775 2.748058 ATCCGGACTGGCGCTGTTTT 62.748 55.000 6.12 0.00 37.80 2.43
773 776 2.748058 AATCCGGACTGGCGCTGTTT 62.748 55.000 6.12 0.00 37.80 2.83
774 777 1.895020 TAATCCGGACTGGCGCTGTT 61.895 55.000 6.12 0.00 37.80 3.16
775 778 2.298158 CTAATCCGGACTGGCGCTGT 62.298 60.000 6.12 6.85 37.80 4.40
776 779 1.592669 CTAATCCGGACTGGCGCTG 60.593 63.158 6.12 2.99 37.80 5.18
777 780 1.614241 AACTAATCCGGACTGGCGCT 61.614 55.000 6.12 0.00 37.80 5.92
778 781 1.152383 GAACTAATCCGGACTGGCGC 61.152 60.000 6.12 0.00 37.80 6.53
779 782 0.460311 AGAACTAATCCGGACTGGCG 59.540 55.000 6.12 0.00 37.80 5.69
780 783 3.814005 TTAGAACTAATCCGGACTGGC 57.186 47.619 6.12 0.00 37.80 4.85
781 784 5.302059 TCTGATTAGAACTAATCCGGACTGG 59.698 44.000 23.22 0.00 46.64 4.00
782 785 6.392625 TCTGATTAGAACTAATCCGGACTG 57.607 41.667 23.22 1.86 46.64 3.51
783 786 6.778069 TGATCTGATTAGAACTAATCCGGACT 59.222 38.462 23.22 0.00 46.64 3.85
784 787 6.982852 TGATCTGATTAGAACTAATCCGGAC 58.017 40.000 23.22 16.60 46.64 4.79
785 788 7.782897 ATGATCTGATTAGAACTAATCCGGA 57.217 36.000 23.22 6.61 46.64 5.14
786 789 7.976734 GGTATGATCTGATTAGAACTAATCCGG 59.023 40.741 23.22 17.85 46.64 5.14
787 790 8.523658 TGGTATGATCTGATTAGAACTAATCCG 58.476 37.037 23.22 19.13 46.64 4.18
822 825 9.073475 ACTCATGCCAAGTTTACAATAGTTTTA 57.927 29.630 0.00 0.00 0.00 1.52
823 826 7.951591 ACTCATGCCAAGTTTACAATAGTTTT 58.048 30.769 0.00 0.00 0.00 2.43
824 827 7.524717 ACTCATGCCAAGTTTACAATAGTTT 57.475 32.000 0.00 0.00 0.00 2.66
825 828 7.883311 AGTACTCATGCCAAGTTTACAATAGTT 59.117 33.333 0.00 0.00 0.00 2.24
826 829 7.394816 AGTACTCATGCCAAGTTTACAATAGT 58.605 34.615 0.00 0.00 0.00 2.12
827 830 7.849804 AGTACTCATGCCAAGTTTACAATAG 57.150 36.000 0.00 0.00 0.00 1.73
828 831 7.880713 TGAAGTACTCATGCCAAGTTTACAATA 59.119 33.333 0.00 0.00 0.00 1.90
829 832 6.714810 TGAAGTACTCATGCCAAGTTTACAAT 59.285 34.615 0.00 0.00 0.00 2.71
830 833 6.058833 TGAAGTACTCATGCCAAGTTTACAA 58.941 36.000 0.00 0.00 0.00 2.41
831 834 5.616270 TGAAGTACTCATGCCAAGTTTACA 58.384 37.500 0.00 0.00 0.00 2.41
832 835 6.743575 ATGAAGTACTCATGCCAAGTTTAC 57.256 37.500 0.00 0.00 43.49 2.01
833 836 8.856153 TTTATGAAGTACTCATGCCAAGTTTA 57.144 30.769 14.40 0.00 44.84 2.01
834 837 7.759489 TTTATGAAGTACTCATGCCAAGTTT 57.241 32.000 14.40 0.00 44.84 2.66
835 838 7.944729 ATTTATGAAGTACTCATGCCAAGTT 57.055 32.000 14.40 0.00 44.84 2.66
836 839 7.944729 AATTTATGAAGTACTCATGCCAAGT 57.055 32.000 14.40 0.00 44.84 3.16
869 872 3.386486 TGTGGTGTGATACGTCTTCAAC 58.614 45.455 0.00 0.00 0.00 3.18
870 873 3.737032 TGTGGTGTGATACGTCTTCAA 57.263 42.857 0.00 0.00 0.00 2.69
871 874 3.584834 CATGTGGTGTGATACGTCTTCA 58.415 45.455 0.00 0.00 0.00 3.02
872 875 2.348666 GCATGTGGTGTGATACGTCTTC 59.651 50.000 0.00 0.00 0.00 2.87
873 876 2.028112 AGCATGTGGTGTGATACGTCTT 60.028 45.455 0.00 0.00 0.00 3.01
874 877 1.550524 AGCATGTGGTGTGATACGTCT 59.449 47.619 0.00 0.00 0.00 4.18
875 878 1.660607 CAGCATGTGGTGTGATACGTC 59.339 52.381 0.00 0.00 38.61 4.34
876 879 1.725641 CAGCATGTGGTGTGATACGT 58.274 50.000 4.13 0.00 38.61 3.57
877 880 0.374758 GCAGCATGTGGTGTGATACG 59.625 55.000 13.07 0.00 44.70 3.06
878 881 1.131126 GTGCAGCATGTGGTGTGATAC 59.869 52.381 13.07 5.14 44.70 2.24
879 882 1.271271 TGTGCAGCATGTGGTGTGATA 60.271 47.619 13.07 0.00 44.70 2.15
880 883 0.537828 TGTGCAGCATGTGGTGTGAT 60.538 50.000 13.07 0.00 44.70 3.06
881 884 1.153005 TGTGCAGCATGTGGTGTGA 60.153 52.632 13.07 0.00 44.70 3.58
895 898 9.573133 AATTAAGCTGTTAATTATTGACTGTGC 57.427 29.630 2.21 6.73 43.90 4.57
914 917 6.927933 AAACGTTCATGCAGTAAATTAAGC 57.072 33.333 0.00 0.00 0.00 3.09
917 920 8.240682 AGCATTAAACGTTCATGCAGTAAATTA 58.759 29.630 31.52 5.95 44.90 1.40
1012 1017 1.559682 TGGTAAGGCATTCCTCCTGAC 59.440 52.381 0.00 0.00 43.40 3.51
1021 1026 4.729868 ACACTTTTCTCTGGTAAGGCATT 58.270 39.130 0.00 0.00 0.00 3.56
1028 1033 3.391296 AGGCAGAACACTTTTCTCTGGTA 59.609 43.478 0.00 0.00 37.62 3.25
1035 1040 5.061179 TGGTAAGTAGGCAGAACACTTTTC 58.939 41.667 0.00 0.00 34.48 2.29
1043 1048 4.359105 ACTGGTATGGTAAGTAGGCAGAA 58.641 43.478 0.00 0.00 0.00 3.02
1051 1056 6.120220 GCAGGATTTTACTGGTATGGTAAGT 58.880 40.000 0.00 0.00 36.48 2.24
1053 1058 5.192923 AGGCAGGATTTTACTGGTATGGTAA 59.807 40.000 0.00 0.00 36.48 2.85
1057 1062 4.949856 ACAAGGCAGGATTTTACTGGTATG 59.050 41.667 0.00 0.00 36.48 2.39
1061 1066 2.094545 GCACAAGGCAGGATTTTACTGG 60.095 50.000 0.00 0.00 43.97 4.00
1111 1118 8.617809 TCGAAGATGTAAAAGCTAGTTGTTTTT 58.382 29.630 4.76 4.76 41.02 1.94
1112 1119 8.149973 TCGAAGATGTAAAAGCTAGTTGTTTT 57.850 30.769 0.00 0.00 0.00 2.43
1113 1120 7.095187 CCTCGAAGATGTAAAAGCTAGTTGTTT 60.095 37.037 0.00 0.00 33.89 2.83
1114 1121 6.369065 CCTCGAAGATGTAAAAGCTAGTTGTT 59.631 38.462 0.00 0.00 33.89 2.83
1115 1122 5.869888 CCTCGAAGATGTAAAAGCTAGTTGT 59.130 40.000 0.00 0.00 33.89 3.32
1116 1123 5.220491 GCCTCGAAGATGTAAAAGCTAGTTG 60.220 44.000 0.00 0.00 33.89 3.16
1117 1124 4.870991 GCCTCGAAGATGTAAAAGCTAGTT 59.129 41.667 0.00 0.00 33.89 2.24
1118 1125 4.434520 GCCTCGAAGATGTAAAAGCTAGT 58.565 43.478 0.00 0.00 33.89 2.57
1119 1126 3.804873 GGCCTCGAAGATGTAAAAGCTAG 59.195 47.826 0.00 0.00 33.89 3.42
1120 1127 3.196901 TGGCCTCGAAGATGTAAAAGCTA 59.803 43.478 3.32 0.00 33.89 3.32
1121 1128 2.027192 TGGCCTCGAAGATGTAAAAGCT 60.027 45.455 3.32 0.00 33.89 3.74
1122 1129 2.356135 TGGCCTCGAAGATGTAAAAGC 58.644 47.619 3.32 0.00 33.89 3.51
1123 1130 5.371115 TTTTGGCCTCGAAGATGTAAAAG 57.629 39.130 3.32 0.00 33.89 2.27
1124 1131 5.768317 CTTTTTGGCCTCGAAGATGTAAAA 58.232 37.500 3.32 0.00 33.89 1.52
1125 1132 4.320935 GCTTTTTGGCCTCGAAGATGTAAA 60.321 41.667 3.32 0.00 33.89 2.01
1126 1133 3.190535 GCTTTTTGGCCTCGAAGATGTAA 59.809 43.478 3.32 0.00 33.89 2.41
1127 1134 2.747446 GCTTTTTGGCCTCGAAGATGTA 59.253 45.455 3.32 0.00 33.89 2.29
1128 1135 1.541588 GCTTTTTGGCCTCGAAGATGT 59.458 47.619 3.32 0.00 33.89 3.06
1129 1136 2.268730 GCTTTTTGGCCTCGAAGATG 57.731 50.000 3.32 0.00 33.89 2.90
1139 1146 0.037046 CTGGTGGATGGCTTTTTGGC 60.037 55.000 0.00 0.00 42.18 4.52
1140 1147 1.341080 ACTGGTGGATGGCTTTTTGG 58.659 50.000 0.00 0.00 0.00 3.28
1141 1148 2.364970 TCAACTGGTGGATGGCTTTTTG 59.635 45.455 0.00 0.00 0.00 2.44
1142 1149 2.676748 TCAACTGGTGGATGGCTTTTT 58.323 42.857 0.00 0.00 0.00 1.94
1143 1150 2.380064 TCAACTGGTGGATGGCTTTT 57.620 45.000 0.00 0.00 0.00 2.27
1144 1151 2.173519 CATCAACTGGTGGATGGCTTT 58.826 47.619 9.58 0.00 37.77 3.51
1145 1152 1.076024 ACATCAACTGGTGGATGGCTT 59.924 47.619 18.74 0.00 44.01 4.35
1146 1153 0.700564 ACATCAACTGGTGGATGGCT 59.299 50.000 18.74 0.56 44.01 4.75
1147 1154 2.092968 TCTACATCAACTGGTGGATGGC 60.093 50.000 18.74 0.00 44.01 4.40
1148 1155 3.912496 TCTACATCAACTGGTGGATGG 57.088 47.619 18.74 5.80 44.01 3.51
1149 1156 8.588472 TCTTATATCTACATCAACTGGTGGATG 58.412 37.037 14.50 14.50 44.97 3.51
1150 1157 8.727100 TCTTATATCTACATCAACTGGTGGAT 57.273 34.615 0.00 0.00 38.53 3.41
1151 1158 8.547481 TTCTTATATCTACATCAACTGGTGGA 57.453 34.615 0.00 0.00 0.00 4.02
1152 1159 9.613428 TTTTCTTATATCTACATCAACTGGTGG 57.387 33.333 0.00 0.00 0.00 4.61
1170 1177 7.893302 TGGGTCAGGTGATGTTAATTTTCTTAT 59.107 33.333 0.00 0.00 0.00 1.73
1174 1181 5.975693 TGGGTCAGGTGATGTTAATTTTC 57.024 39.130 0.00 0.00 0.00 2.29
1179 1186 3.392947 TCACTTGGGTCAGGTGATGTTAA 59.607 43.478 8.45 0.00 43.62 2.01
1181 1188 1.774254 TCACTTGGGTCAGGTGATGTT 59.226 47.619 8.45 0.00 43.62 2.71
1188 1195 4.141287 TGTTTTACATCACTTGGGTCAGG 58.859 43.478 0.00 0.00 0.00 3.86
1191 1198 5.298276 TGTTCTGTTTTACATCACTTGGGTC 59.702 40.000 0.00 0.00 0.00 4.46
1192 1199 5.197451 TGTTCTGTTTTACATCACTTGGGT 58.803 37.500 0.00 0.00 0.00 4.51
1209 1216 5.117355 AGTTTGCATGTTCAGATGTTCTG 57.883 39.130 0.00 0.00 45.59 3.02
1211 1218 6.437928 TGTAAGTTTGCATGTTCAGATGTTC 58.562 36.000 0.00 0.00 0.00 3.18
1216 1223 6.882610 AAGATGTAAGTTTGCATGTTCAGA 57.117 33.333 0.06 0.00 32.83 3.27
1219 1226 5.858581 GGTGAAGATGTAAGTTTGCATGTTC 59.141 40.000 18.98 18.98 46.32 3.18
1220 1227 5.536161 AGGTGAAGATGTAAGTTTGCATGTT 59.464 36.000 5.30 5.30 38.93 2.71
1222 1229 5.633830 AGGTGAAGATGTAAGTTTGCATG 57.366 39.130 0.06 0.00 33.56 4.06
1230 1237 4.556233 TCACGTGAAGGTGAAGATGTAAG 58.444 43.478 17.62 0.00 43.55 2.34
1245 1252 1.795872 CAGCCGTTTTACATCACGTGA 59.204 47.619 22.48 22.48 34.47 4.35
1248 1255 1.127951 GACCAGCCGTTTTACATCACG 59.872 52.381 0.00 0.00 36.12 4.35
1249 1256 1.127951 CGACCAGCCGTTTTACATCAC 59.872 52.381 0.00 0.00 0.00 3.06
1250 1257 1.434555 CGACCAGCCGTTTTACATCA 58.565 50.000 0.00 0.00 0.00 3.07
1251 1258 0.096454 GCGACCAGCCGTTTTACATC 59.904 55.000 0.00 0.00 40.81 3.06
1252 1259 1.632046 CGCGACCAGCCGTTTTACAT 61.632 55.000 0.00 0.00 44.76 2.29
1253 1260 2.311701 CGCGACCAGCCGTTTTACA 61.312 57.895 0.00 0.00 44.76 2.41
1254 1261 2.472934 CGCGACCAGCCGTTTTAC 59.527 61.111 0.00 0.00 44.76 2.01
1255 1262 3.416382 GCGCGACCAGCCGTTTTA 61.416 61.111 12.10 0.00 44.76 1.52
1263 1270 3.767230 CAGTTGACGCGCGACCAG 61.767 66.667 39.36 15.68 0.00 4.00
1264 1271 4.578898 ACAGTTGACGCGCGACCA 62.579 61.111 39.36 28.80 0.00 4.02
1265 1272 3.335534 AACAGTTGACGCGCGACC 61.336 61.111 39.36 26.50 0.00 4.79
1266 1273 2.128128 CAACAGTTGACGCGCGAC 60.128 61.111 39.36 31.63 0.00 5.19
1267 1274 2.084763 GAACAACAGTTGACGCGCGA 62.085 55.000 39.36 13.15 0.00 5.87
1268 1275 1.717728 GAACAACAGTTGACGCGCG 60.718 57.895 30.96 30.96 0.00 6.86
1269 1276 0.041312 ATGAACAACAGTTGACGCGC 60.041 50.000 20.56 0.00 0.00 6.86
1270 1277 2.383298 AATGAACAACAGTTGACGCG 57.617 45.000 20.56 3.53 0.00 6.01
1271 1278 3.952535 AGAAATGAACAACAGTTGACGC 58.047 40.909 20.56 8.74 36.92 5.19
1272 1279 6.020678 GGAAAAGAAATGAACAACAGTTGACG 60.021 38.462 20.56 0.00 36.92 4.35
1273 1280 7.035612 AGGAAAAGAAATGAACAACAGTTGAC 58.964 34.615 20.56 13.06 36.92 3.18
1274 1281 7.169158 AGGAAAAGAAATGAACAACAGTTGA 57.831 32.000 20.56 0.00 36.92 3.18
1275 1282 6.476706 GGAGGAAAAGAAATGAACAACAGTTG 59.523 38.462 12.03 12.03 36.92 3.16
1276 1283 6.406961 GGGAGGAAAAGAAATGAACAACAGTT 60.407 38.462 0.00 0.00 39.54 3.16
1277 1284 5.069119 GGGAGGAAAAGAAATGAACAACAGT 59.931 40.000 0.00 0.00 0.00 3.55
1278 1285 5.068987 TGGGAGGAAAAGAAATGAACAACAG 59.931 40.000 0.00 0.00 0.00 3.16
1279 1286 4.959210 TGGGAGGAAAAGAAATGAACAACA 59.041 37.500 0.00 0.00 0.00 3.33
1280 1287 5.289595 GTGGGAGGAAAAGAAATGAACAAC 58.710 41.667 0.00 0.00 0.00 3.32
1281 1288 4.343814 GGTGGGAGGAAAAGAAATGAACAA 59.656 41.667 0.00 0.00 0.00 2.83
1290 1297 2.345991 CGCGGTGGGAGGAAAAGA 59.654 61.111 0.00 0.00 0.00 2.52
1297 1304 2.892425 GAAGATGCGCGGTGGGAG 60.892 66.667 8.83 0.00 0.00 4.30
1298 1305 4.812476 CGAAGATGCGCGGTGGGA 62.812 66.667 8.83 0.00 0.00 4.37
1303 1310 2.509336 AAGGACGAAGATGCGCGG 60.509 61.111 8.83 0.00 33.86 6.46
1306 1313 2.517450 GCGGAAGGACGAAGATGCG 61.517 63.158 0.00 0.00 35.47 4.73
1309 1316 1.218316 GTGGCGGAAGGACGAAGAT 59.782 57.895 0.00 0.00 35.47 2.40
1312 1319 4.011517 GGGTGGCGGAAGGACGAA 62.012 66.667 0.00 0.00 35.47 3.85
1356 1363 3.508840 GCAGTATGGTGCGGTGGC 61.509 66.667 0.00 0.00 35.86 5.01
1362 1369 3.564027 GCGACCGCAGTATGGTGC 61.564 66.667 9.73 0.00 40.63 5.01
1363 1370 2.890474 GGCGACCGCAGTATGGTG 60.890 66.667 16.47 0.00 40.63 4.17
1364 1371 4.157120 GGGCGACCGCAGTATGGT 62.157 66.667 16.47 0.00 43.64 3.55
1378 1385 2.569134 CTAGATCTAGCGCGGGGC 59.431 66.667 16.68 9.26 44.05 5.80
1386 1393 1.040646 TGGTTGGCGGCTAGATCTAG 58.959 55.000 23.20 23.20 36.29 2.43
1387 1394 0.750850 GTGGTTGGCGGCTAGATCTA 59.249 55.000 11.43 1.69 0.00 1.98
1388 1395 1.522569 GTGGTTGGCGGCTAGATCT 59.477 57.895 11.43 0.00 0.00 2.75
1389 1396 1.523938 GGTGGTTGGCGGCTAGATC 60.524 63.158 11.43 0.00 0.00 2.75
1390 1397 2.590092 GGTGGTTGGCGGCTAGAT 59.410 61.111 11.43 0.00 0.00 1.98
1391 1398 3.712907 GGGTGGTTGGCGGCTAGA 61.713 66.667 11.43 0.00 0.00 2.43
1392 1399 4.796495 GGGGTGGTTGGCGGCTAG 62.796 72.222 11.43 0.00 0.00 3.42
1417 1424 3.577313 GATTCAAGGCGAGCGGGC 61.577 66.667 0.00 0.00 42.69 6.13
1418 1425 3.264897 CGATTCAAGGCGAGCGGG 61.265 66.667 0.00 0.00 0.00 6.13
1419 1426 3.264897 CCGATTCAAGGCGAGCGG 61.265 66.667 0.00 0.00 37.16 5.52
1420 1427 3.929948 GCCGATTCAAGGCGAGCG 61.930 66.667 0.00 0.00 45.58 5.03
1446 1453 3.799755 GGTGGCGACAACGATGGC 61.800 66.667 0.00 0.00 46.06 4.40
1453 1460 3.524648 GAGAACCGGGTGGCGACAA 62.525 63.158 6.32 0.00 46.06 3.18
1454 1461 3.998672 GAGAACCGGGTGGCGACA 61.999 66.667 6.32 0.00 39.70 4.35
1455 1462 4.754667 GGAGAACCGGGTGGCGAC 62.755 72.222 6.32 0.00 39.70 5.19
1458 1465 4.717313 GGTGGAGAACCGGGTGGC 62.717 72.222 6.32 0.00 39.81 5.01
1466 1473 1.745489 GGCGATGGTGGTGGAGAAC 60.745 63.158 0.00 0.00 0.00 3.01
1467 1474 2.668632 GGCGATGGTGGTGGAGAA 59.331 61.111 0.00 0.00 0.00 2.87
1468 1475 3.399181 GGGCGATGGTGGTGGAGA 61.399 66.667 0.00 0.00 0.00 3.71
1469 1476 4.838152 CGGGCGATGGTGGTGGAG 62.838 72.222 0.00 0.00 0.00 3.86
1471 1478 3.697439 AATCGGGCGATGGTGGTGG 62.697 63.158 0.00 0.00 34.70 4.61
1472 1479 2.124736 AATCGGGCGATGGTGGTG 60.125 61.111 0.00 0.00 34.70 4.17
1473 1480 1.983119 ATGAATCGGGCGATGGTGGT 61.983 55.000 0.00 0.00 34.70 4.16
1474 1481 1.227943 ATGAATCGGGCGATGGTGG 60.228 57.895 0.00 0.00 34.70 4.61
1475 1482 0.532640 TGATGAATCGGGCGATGGTG 60.533 55.000 0.00 0.00 34.70 4.17
1476 1483 0.532862 GTGATGAATCGGGCGATGGT 60.533 55.000 0.00 0.00 34.70 3.55
1477 1484 1.230635 GGTGATGAATCGGGCGATGG 61.231 60.000 0.00 0.00 34.70 3.51
1478 1485 1.560004 CGGTGATGAATCGGGCGATG 61.560 60.000 0.00 0.00 34.70 3.84
1479 1486 1.300931 CGGTGATGAATCGGGCGAT 60.301 57.895 0.00 0.00 36.23 4.58
1480 1487 2.106131 CGGTGATGAATCGGGCGA 59.894 61.111 0.00 0.00 0.00 5.54
1481 1488 3.640000 GCGGTGATGAATCGGGCG 61.640 66.667 0.00 0.00 0.00 6.13
1482 1489 3.279875 GGCGGTGATGAATCGGGC 61.280 66.667 0.00 0.00 0.00 6.13
1483 1490 1.439353 CTTGGCGGTGATGAATCGGG 61.439 60.000 0.00 0.00 0.00 5.14
1484 1491 2.016961 CTTGGCGGTGATGAATCGG 58.983 57.895 0.00 0.00 0.00 4.18
1485 1492 1.353103 GCTTGGCGGTGATGAATCG 59.647 57.895 0.00 0.00 0.00 3.34
1486 1493 1.728490 GGGCTTGGCGGTGATGAATC 61.728 60.000 0.00 0.00 0.00 2.52
1487 1494 1.754234 GGGCTTGGCGGTGATGAAT 60.754 57.895 0.00 0.00 0.00 2.57
1488 1495 2.361104 GGGCTTGGCGGTGATGAA 60.361 61.111 0.00 0.00 0.00 2.57
1489 1496 4.424711 GGGGCTTGGCGGTGATGA 62.425 66.667 0.00 0.00 0.00 2.92
1498 1505 4.052518 CTCAGGGTGGGGGCTTGG 62.053 72.222 0.00 0.00 0.00 3.61
1499 1506 4.748144 GCTCAGGGTGGGGGCTTG 62.748 72.222 0.00 0.00 0.00 4.01
1533 1540 4.087892 CGAGAGCCTGGTGGTGGG 62.088 72.222 0.00 0.00 35.27 4.61
1534 1541 2.997315 TCGAGAGCCTGGTGGTGG 60.997 66.667 0.00 0.00 35.27 4.61
1535 1542 2.262915 GTCGAGAGCCTGGTGGTG 59.737 66.667 0.00 0.00 35.27 4.17
1536 1543 2.997897 GGTCGAGAGCCTGGTGGT 60.998 66.667 0.00 0.00 35.27 4.16
1537 1544 3.775654 GGGTCGAGAGCCTGGTGG 61.776 72.222 13.55 0.00 45.14 4.61
1538 1545 4.135153 CGGGTCGAGAGCCTGGTG 62.135 72.222 17.79 0.34 46.33 4.17
1539 1546 4.361971 TCGGGTCGAGAGCCTGGT 62.362 66.667 17.79 0.00 46.33 4.00
2024 2031 1.466950 GAATCGGGCGACAACAATTGA 59.533 47.619 13.59 0.00 0.00 2.57
2026 2033 1.199097 GTGAATCGGGCGACAACAATT 59.801 47.619 0.00 0.00 0.00 2.32
2028 2035 1.231958 GGTGAATCGGGCGACAACAA 61.232 55.000 0.00 0.00 0.00 2.83
2029 2036 1.669760 GGTGAATCGGGCGACAACA 60.670 57.895 0.00 0.00 0.00 3.33
2031 2038 1.669760 GTGGTGAATCGGGCGACAA 60.670 57.895 0.00 0.00 0.00 3.18
2032 2039 2.047655 GTGGTGAATCGGGCGACA 60.048 61.111 0.00 0.00 0.00 4.35
2099 2130 0.103208 ATCTACACAGCGGCAGTAGC 59.897 55.000 17.11 0.00 36.16 3.58
2101 2132 1.202256 CGAATCTACACAGCGGCAGTA 60.202 52.381 1.45 1.28 0.00 2.74
2112 2143 0.179181 GCACGACGGTCGAATCTACA 60.179 55.000 34.40 0.00 43.74 2.74
2113 2144 0.179181 TGCACGACGGTCGAATCTAC 60.179 55.000 34.40 16.89 43.74 2.59
2373 2529 9.080097 ACCTATAATCATAGTTACACTCTGGTC 57.920 37.037 0.00 0.00 33.51 4.02
2469 2628 2.030628 TGTGTGAGCTTCGTTCGATACA 60.031 45.455 0.00 0.00 0.00 2.29
2474 2633 0.927537 TGTTGTGTGAGCTTCGTTCG 59.072 50.000 0.00 0.00 0.00 3.95
2572 2739 5.785243 TGTCCTGTTGTGTATAATTGTCGA 58.215 37.500 0.00 0.00 0.00 4.20
2573 2740 6.304126 GTTGTCCTGTTGTGTATAATTGTCG 58.696 40.000 0.00 0.00 0.00 4.35
2578 2747 7.450014 TCAATTGGTTGTCCTGTTGTGTATAAT 59.550 33.333 5.42 0.00 36.69 1.28
2582 2751 4.527944 TCAATTGGTTGTCCTGTTGTGTA 58.472 39.130 5.42 0.00 36.69 2.90
2591 2760 5.048083 TGCAGTCTATTTCAATTGGTTGTCC 60.048 40.000 5.42 0.00 36.69 4.02
2593 2762 5.301551 TGTGCAGTCTATTTCAATTGGTTGT 59.698 36.000 5.42 0.00 36.69 3.32
2612 2781 6.264292 AGTCCACTATGTTTATTTTGTGTGCA 59.736 34.615 0.00 0.00 0.00 4.57
2632 2801 1.129917 TCGGTTGTGGGTTAAGTCCA 58.870 50.000 0.00 0.00 0.00 4.02
2716 2885 7.975058 TCGTGATAACAAGGAATAACGATACAA 59.025 33.333 0.00 0.00 34.73 2.41
2800 2971 5.367060 AGAGGTTGGAGAGAGTTTTTACTGT 59.633 40.000 0.00 0.00 0.00 3.55
2923 3095 4.240096 GAGCAAACTAAAATGCATGTGCT 58.760 39.130 0.00 0.00 44.95 4.40
2938 3583 3.000322 CGAGTACATGGAATCGAGCAAAC 60.000 47.826 22.83 0.00 37.35 2.93
2960 3640 6.806739 GCAAGATAGTGTTATGGTGGAAAAAC 59.193 38.462 0.00 0.00 0.00 2.43
2980 3660 0.178992 CCCCACTTCAGTTGGCAAGA 60.179 55.000 0.00 0.00 30.07 3.02
2989 3669 0.251916 TACGCCATTCCCCACTTCAG 59.748 55.000 0.00 0.00 0.00 3.02
2999 3679 1.593006 CGGAAGTGATGTACGCCATTC 59.407 52.381 0.00 0.00 32.56 2.67
3099 3942 5.566826 CGTGAGTTTTGTCTTCCATCTCCTA 60.567 44.000 0.00 0.00 0.00 2.94
3108 3951 7.148722 CCTCTATTCTTCGTGAGTTTTGTCTTC 60.149 40.741 0.00 0.00 0.00 2.87
3114 3957 5.153950 AGCCTCTATTCTTCGTGAGTTTT 57.846 39.130 0.00 0.00 0.00 2.43
3131 3974 4.395231 GTGTCACCCTTGTATTTTAGCCTC 59.605 45.833 0.00 0.00 0.00 4.70
3135 3978 9.715121 TTACTTAGTGTCACCCTTGTATTTTAG 57.285 33.333 0.00 0.00 0.00 1.85
3219 5112 5.632034 AGGGAGTTTAGTTCACAAAGACT 57.368 39.130 0.00 0.00 0.00 3.24
3239 5132 2.095059 CTTCTGAATGAAACCCGCAAGG 60.095 50.000 0.00 0.00 46.07 3.61
3240 5133 2.669391 GCTTCTGAATGAAACCCGCAAG 60.669 50.000 0.00 0.00 33.79 4.01
3241 5134 1.269448 GCTTCTGAATGAAACCCGCAA 59.731 47.619 0.00 0.00 33.79 4.85
3242 5135 0.881118 GCTTCTGAATGAAACCCGCA 59.119 50.000 0.00 0.00 33.79 5.69
3330 5284 9.206870 CATGGTTTATCTACAAAATTTGTGCTT 57.793 29.630 20.40 7.81 45.03 3.91
3340 5294 6.345298 TCATCGAGCATGGTTTATCTACAAA 58.655 36.000 0.00 0.00 32.64 2.83
3582 5536 0.099968 TACATGAGCGGCGTGTACTC 59.900 55.000 9.37 7.05 44.72 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.