Multiple sequence alignment - TraesCS5A01G167100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G167100 chr5A 100.000 2489 0 0 1 2489 356103622 356106110 0.000000e+00 4597.0
1 TraesCS5A01G167100 chr5A 80.952 105 14 6 2136 2237 158911092 158911193 7.380000e-11 78.7
2 TraesCS5A01G167100 chr5D 91.798 1463 63 17 109 1540 268516612 268518048 0.000000e+00 1984.0
3 TraesCS5A01G167100 chr5D 91.473 258 16 3 1569 1826 268518437 268518688 1.420000e-92 350.0
4 TraesCS5A01G167100 chr5D 86.026 229 16 7 2227 2440 268518689 268518916 5.350000e-57 231.0
5 TraesCS5A01G167100 chr5B 90.852 1432 62 33 443 1826 304124750 304126160 0.000000e+00 1855.0
6 TraesCS5A01G167100 chr5B 89.947 378 23 14 76 449 304124362 304124728 8.060000e-130 473.0
7 TraesCS5A01G167100 chr4B 95.588 408 3 1 1823 2230 630376853 630377245 7.510000e-180 640.0
8 TraesCS5A01G167100 chr4B 87.273 55 7 0 2176 2230 31524785 31524839 2.070000e-06 63.9
9 TraesCS5A01G167100 chr3A 94.404 411 7 5 1823 2233 383370076 383370470 3.520000e-173 617.0
10 TraesCS5A01G167100 chr3B 90.976 410 22 2 1823 2232 215867245 215867639 2.820000e-149 538.0
11 TraesCS5A01G167100 chr3B 90.164 61 5 1 2171 2230 120051504 120051564 7.380000e-11 78.7
12 TraesCS5A01G167100 chr6B 90.931 408 21 3 1823 2229 162545075 162545467 3.640000e-148 534.0
13 TraesCS5A01G167100 chr6B 90.557 413 23 3 1823 2235 64283831 64283435 1.310000e-147 532.0
14 TraesCS5A01G167100 chr6B 78.947 95 15 5 2140 2232 200660371 200660280 2.670000e-05 60.2
15 TraesCS5A01G167100 chr1A 86.047 86 9 2 2357 2440 517521131 517521215 3.410000e-14 89.8
16 TraesCS5A01G167100 chr7D 89.062 64 7 0 1823 1886 234822660 234822723 2.050000e-11 80.5
17 TraesCS5A01G167100 chr7D 88.710 62 7 0 1823 1884 260855421 260855360 2.650000e-10 76.8
18 TraesCS5A01G167100 chr3D 88.060 67 8 0 1823 1889 319333355 319333289 2.050000e-11 80.5
19 TraesCS5A01G167100 chr3D 89.062 64 7 0 1823 1886 328482602 328482665 2.050000e-11 80.5
20 TraesCS5A01G167100 chr1D 88.525 61 7 0 1823 1883 53102442 53102502 9.550000e-10 75.0
21 TraesCS5A01G167100 chr7A 86.567 67 8 1 1823 1889 352281847 352281782 3.430000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G167100 chr5A 356103622 356106110 2488 False 4597 4597 100.000000 1 2489 1 chr5A.!!$F2 2488
1 TraesCS5A01G167100 chr5D 268516612 268518916 2304 False 855 1984 89.765667 109 2440 3 chr5D.!!$F1 2331
2 TraesCS5A01G167100 chr5B 304124362 304126160 1798 False 1164 1855 90.399500 76 1826 2 chr5B.!!$F1 1750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.385974 GCGATCCAAATACCGCATGC 60.386 55.0 7.91 7.91 46.04 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1913 2355 0.03254 CCAAGGGAAAGCAGCACAAC 59.967 55.0 0.0 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.739752 TCTTTTGTTAGGATGATCATGCG 57.260 39.130 19.97 5.05 34.10 4.73
30 31 5.427378 TCTTTTGTTAGGATGATCATGCGA 58.573 37.500 19.97 13.34 34.10 5.10
31 32 6.057533 TCTTTTGTTAGGATGATCATGCGAT 58.942 36.000 19.97 7.76 34.10 4.58
33 34 3.930336 TGTTAGGATGATCATGCGATCC 58.070 45.455 19.97 12.28 46.50 3.36
34 35 3.324556 TGTTAGGATGATCATGCGATCCA 59.675 43.478 19.97 12.30 46.50 3.41
35 36 4.202346 TGTTAGGATGATCATGCGATCCAA 60.202 41.667 19.97 8.77 46.50 3.53
36 37 3.497103 AGGATGATCATGCGATCCAAA 57.503 42.857 19.97 0.00 46.50 3.28
37 38 4.030314 AGGATGATCATGCGATCCAAAT 57.970 40.909 19.97 0.00 46.50 2.32
38 39 5.169992 AGGATGATCATGCGATCCAAATA 57.830 39.130 19.97 0.00 46.50 1.40
39 40 4.940046 AGGATGATCATGCGATCCAAATAC 59.060 41.667 19.97 0.00 46.50 1.89
40 41 4.095483 GGATGATCATGCGATCCAAATACC 59.905 45.833 14.30 0.00 46.50 2.73
41 42 3.066380 TGATCATGCGATCCAAATACCG 58.934 45.455 0.00 0.00 46.50 4.02
42 43 1.225855 TCATGCGATCCAAATACCGC 58.774 50.000 0.00 0.00 46.82 5.68
45 46 3.753774 GCGATCCAAATACCGCATG 57.246 52.632 0.00 0.00 46.04 4.06
46 47 0.385974 GCGATCCAAATACCGCATGC 60.386 55.000 7.91 7.91 46.04 4.06
47 48 0.943673 CGATCCAAATACCGCATGCA 59.056 50.000 19.57 0.00 0.00 3.96
48 49 1.069703 CGATCCAAATACCGCATGCAG 60.070 52.381 19.57 9.32 0.00 4.41
49 50 2.221169 GATCCAAATACCGCATGCAGA 58.779 47.619 19.57 1.60 0.00 4.26
50 51 2.346766 TCCAAATACCGCATGCAGAT 57.653 45.000 19.57 4.24 0.00 2.90
51 52 2.653726 TCCAAATACCGCATGCAGATT 58.346 42.857 19.57 10.46 0.00 2.40
52 53 3.023119 TCCAAATACCGCATGCAGATTT 58.977 40.909 19.57 15.64 0.00 2.17
53 54 3.446873 TCCAAATACCGCATGCAGATTTT 59.553 39.130 19.57 8.98 0.00 1.82
54 55 4.081752 TCCAAATACCGCATGCAGATTTTT 60.082 37.500 19.57 7.56 0.00 1.94
55 56 5.126222 TCCAAATACCGCATGCAGATTTTTA 59.874 36.000 19.57 7.08 0.00 1.52
56 57 5.984926 CCAAATACCGCATGCAGATTTTTAT 59.015 36.000 19.57 0.00 0.00 1.40
57 58 6.479660 CCAAATACCGCATGCAGATTTTTATT 59.520 34.615 19.57 3.38 0.00 1.40
58 59 7.011295 CCAAATACCGCATGCAGATTTTTATTT 59.989 33.333 19.57 9.18 0.00 1.40
59 60 8.389603 CAAATACCGCATGCAGATTTTTATTTT 58.610 29.630 19.57 0.68 0.00 1.82
60 61 7.698836 ATACCGCATGCAGATTTTTATTTTC 57.301 32.000 19.57 0.00 0.00 2.29
61 62 5.477510 ACCGCATGCAGATTTTTATTTTCA 58.522 33.333 19.57 0.00 0.00 2.69
62 63 5.577945 ACCGCATGCAGATTTTTATTTTCAG 59.422 36.000 19.57 0.00 0.00 3.02
63 64 5.577945 CCGCATGCAGATTTTTATTTTCAGT 59.422 36.000 19.57 0.00 0.00 3.41
64 65 6.454583 CCGCATGCAGATTTTTATTTTCAGTG 60.455 38.462 19.57 0.00 0.00 3.66
65 66 6.454583 CGCATGCAGATTTTTATTTTCAGTGG 60.455 38.462 19.57 0.00 0.00 4.00
66 67 6.183360 GCATGCAGATTTTTATTTTCAGTGGG 60.183 38.462 14.21 0.00 0.00 4.61
67 68 6.662865 TGCAGATTTTTATTTTCAGTGGGA 57.337 33.333 0.00 0.00 0.00 4.37
68 69 6.454795 TGCAGATTTTTATTTTCAGTGGGAC 58.545 36.000 0.00 0.00 0.00 4.46
69 70 6.267471 TGCAGATTTTTATTTTCAGTGGGACT 59.733 34.615 0.00 0.00 0.00 3.85
70 71 7.154656 GCAGATTTTTATTTTCAGTGGGACTT 58.845 34.615 0.00 0.00 0.00 3.01
71 72 7.657354 GCAGATTTTTATTTTCAGTGGGACTTT 59.343 33.333 0.00 0.00 0.00 2.66
72 73 9.196552 CAGATTTTTATTTTCAGTGGGACTTTC 57.803 33.333 0.00 0.00 0.00 2.62
73 74 8.923270 AGATTTTTATTTTCAGTGGGACTTTCA 58.077 29.630 0.00 0.00 0.00 2.69
74 75 9.196552 GATTTTTATTTTCAGTGGGACTTTCAG 57.803 33.333 0.00 0.00 0.00 3.02
77 78 2.638480 TTCAGTGGGACTTTCAGTGG 57.362 50.000 0.00 0.00 36.51 4.00
89 90 3.381590 ACTTTCAGTGGGCAAAAGAGTTC 59.618 43.478 8.56 0.00 34.76 3.01
94 95 6.061022 TCAGTGGGCAAAAGAGTTCATATA 57.939 37.500 0.00 0.00 0.00 0.86
97 98 7.450014 TCAGTGGGCAAAAGAGTTCATATAAAA 59.550 33.333 0.00 0.00 0.00 1.52
182 183 1.972660 GCCTCCACGCCCATAGAACT 61.973 60.000 0.00 0.00 0.00 3.01
185 186 0.824109 TCCACGCCCATAGAACTGAG 59.176 55.000 0.00 0.00 0.00 3.35
217 218 1.447317 GATAACCCTGCCACGCCATG 61.447 60.000 0.00 0.00 0.00 3.66
225 226 2.263227 CCACGCCATGGTCACGTA 59.737 61.111 14.67 0.00 44.46 3.57
227 228 2.126228 ACGCCATGGTCACGTACG 60.126 61.111 15.01 15.01 38.45 3.67
228 229 2.126228 CGCCATGGTCACGTACGT 60.126 61.111 16.72 16.72 0.00 3.57
229 230 2.441378 CGCCATGGTCACGTACGTG 61.441 63.158 36.46 36.46 46.64 4.49
390 393 1.104630 GTCGACAAACCCACCCAAAA 58.895 50.000 11.55 0.00 0.00 2.44
398 401 2.532250 ACCCACCCAAAATCTGATCC 57.468 50.000 0.00 0.00 0.00 3.36
460 490 0.458370 GCACCACCGATTGATTTGGC 60.458 55.000 0.00 0.00 31.76 4.52
463 493 1.271871 ACCACCGATTGATTTGGCTCA 60.272 47.619 0.00 0.00 31.76 4.26
467 497 2.890311 ACCGATTGATTTGGCTCAAACA 59.110 40.909 2.96 2.25 38.55 2.83
472 502 6.589523 CCGATTGATTTGGCTCAAACAAATTA 59.410 34.615 5.06 0.00 45.60 1.40
500 530 2.814183 AAGGCCGCGACGTTAGAGTG 62.814 60.000 8.23 0.00 0.00 3.51
503 537 1.671880 GCCGCGACGTTAGAGTGAAC 61.672 60.000 8.23 0.00 0.00 3.18
565 600 6.430000 CCTGGAGCTAGAGTAGATTAGAGAAC 59.570 46.154 0.00 0.00 0.00 3.01
606 641 9.905713 AGTGAGTGTGTGTTATCCATTAATAAT 57.094 29.630 0.00 0.00 0.00 1.28
649 690 0.787173 CTAACACCGTCGTCGTCGTC 60.787 60.000 10.76 0.00 38.33 4.20
650 691 2.479027 TAACACCGTCGTCGTCGTCG 62.479 60.000 13.54 13.54 44.85 5.12
651 692 4.360027 CACCGTCGTCGTCGTCGT 62.360 66.667 17.80 6.11 44.09 4.34
656 697 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
657 698 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
725 775 1.534163 GAAACGTTCCTGGTTACTGCC 59.466 52.381 0.00 0.00 0.00 4.85
793 858 6.106673 AGTCGTTAATTGATTACTCACAGGG 58.893 40.000 0.00 0.00 0.00 4.45
820 889 7.679638 GCAACAGCTTTCTTCTTCTCAGTTAAA 60.680 37.037 0.00 0.00 0.00 1.52
851 920 1.370587 GGGACAGACGAGTCTCTCCG 61.371 65.000 17.33 4.61 43.21 4.63
939 1016 8.110860 TCTCTCTCTTCTTCTTCTTCTTCTTC 57.889 38.462 0.00 0.00 0.00 2.87
940 1017 6.908825 TCTCTCTTCTTCTTCTTCTTCTTCG 58.091 40.000 0.00 0.00 0.00 3.79
941 1018 6.488683 TCTCTCTTCTTCTTCTTCTTCTTCGT 59.511 38.462 0.00 0.00 0.00 3.85
963 1040 1.227380 CTTCAGATCCCCGGAAGCG 60.227 63.158 0.73 0.00 39.52 4.68
983 1060 1.079543 CAGACCCGGAGCAACTGAG 60.080 63.158 0.73 0.00 0.00 3.35
1549 1630 1.643868 CGCGCCATGGCTTTTGTCTA 61.644 55.000 33.07 0.00 39.32 2.59
1598 2039 4.868171 GCTCGATACCTGTTGTACAAATGA 59.132 41.667 10.51 0.00 30.62 2.57
1599 2040 5.350365 GCTCGATACCTGTTGTACAAATGAA 59.650 40.000 10.51 0.00 30.62 2.57
1600 2041 6.128391 GCTCGATACCTGTTGTACAAATGAAA 60.128 38.462 10.51 0.00 30.62 2.69
1818 2260 5.163301 GCTATCACCATTCTTCCTTGGTCTA 60.163 44.000 0.00 0.00 44.38 2.59
1826 2268 5.599999 TTCTTCCTTGGTCTATGCTACTC 57.400 43.478 0.00 0.00 0.00 2.59
1827 2269 3.961408 TCTTCCTTGGTCTATGCTACTCC 59.039 47.826 0.00 0.00 0.00 3.85
1828 2270 2.679082 TCCTTGGTCTATGCTACTCCC 58.321 52.381 0.00 0.00 0.00 4.30
1829 2271 2.247635 TCCTTGGTCTATGCTACTCCCT 59.752 50.000 0.00 0.00 0.00 4.20
1830 2272 2.630580 CCTTGGTCTATGCTACTCCCTC 59.369 54.545 0.00 0.00 0.00 4.30
1831 2273 2.383442 TGGTCTATGCTACTCCCTCC 57.617 55.000 0.00 0.00 0.00 4.30
1832 2274 1.249407 GGTCTATGCTACTCCCTCCG 58.751 60.000 0.00 0.00 0.00 4.63
1833 2275 1.249407 GTCTATGCTACTCCCTCCGG 58.751 60.000 0.00 0.00 0.00 5.14
1834 2276 0.851469 TCTATGCTACTCCCTCCGGT 59.149 55.000 0.00 0.00 0.00 5.28
1835 2277 1.202903 TCTATGCTACTCCCTCCGGTC 60.203 57.143 0.00 0.00 0.00 4.79
1836 2278 0.178970 TATGCTACTCCCTCCGGTCC 60.179 60.000 0.00 0.00 0.00 4.46
1837 2279 1.950748 ATGCTACTCCCTCCGGTCCT 61.951 60.000 0.00 0.00 0.00 3.85
1838 2280 1.829096 GCTACTCCCTCCGGTCCTC 60.829 68.421 0.00 0.00 0.00 3.71
1839 2281 1.924352 CTACTCCCTCCGGTCCTCT 59.076 63.158 0.00 0.00 0.00 3.69
1840 2282 0.259356 CTACTCCCTCCGGTCCTCTT 59.741 60.000 0.00 0.00 0.00 2.85
1841 2283 0.708802 TACTCCCTCCGGTCCTCTTT 59.291 55.000 0.00 0.00 0.00 2.52
1842 2284 0.178900 ACTCCCTCCGGTCCTCTTTT 60.179 55.000 0.00 0.00 0.00 2.27
1843 2285 0.250513 CTCCCTCCGGTCCTCTTTTG 59.749 60.000 0.00 0.00 0.00 2.44
1844 2286 0.473117 TCCCTCCGGTCCTCTTTTGT 60.473 55.000 0.00 0.00 0.00 2.83
1845 2287 0.400594 CCCTCCGGTCCTCTTTTGTT 59.599 55.000 0.00 0.00 0.00 2.83
1846 2288 1.202891 CCCTCCGGTCCTCTTTTGTTT 60.203 52.381 0.00 0.00 0.00 2.83
1847 2289 1.880027 CCTCCGGTCCTCTTTTGTTTG 59.120 52.381 0.00 0.00 0.00 2.93
1848 2290 1.266989 CTCCGGTCCTCTTTTGTTTGC 59.733 52.381 0.00 0.00 0.00 3.68
1849 2291 0.040425 CCGGTCCTCTTTTGTTTGCG 60.040 55.000 0.00 0.00 0.00 4.85
1850 2292 0.661020 CGGTCCTCTTTTGTTTGCGT 59.339 50.000 0.00 0.00 0.00 5.24
1851 2293 1.868498 CGGTCCTCTTTTGTTTGCGTA 59.132 47.619 0.00 0.00 0.00 4.42
1852 2294 2.482721 CGGTCCTCTTTTGTTTGCGTAT 59.517 45.455 0.00 0.00 0.00 3.06
1853 2295 3.680937 CGGTCCTCTTTTGTTTGCGTATA 59.319 43.478 0.00 0.00 0.00 1.47
1854 2296 4.152759 CGGTCCTCTTTTGTTTGCGTATAA 59.847 41.667 0.00 0.00 0.00 0.98
1855 2297 5.163794 CGGTCCTCTTTTGTTTGCGTATAAT 60.164 40.000 0.00 0.00 0.00 1.28
1856 2298 6.617879 GGTCCTCTTTTGTTTGCGTATAATT 58.382 36.000 0.00 0.00 0.00 1.40
1857 2299 7.088272 GGTCCTCTTTTGTTTGCGTATAATTT 58.912 34.615 0.00 0.00 0.00 1.82
1858 2300 7.597369 GGTCCTCTTTTGTTTGCGTATAATTTT 59.403 33.333 0.00 0.00 0.00 1.82
1859 2301 8.974408 GTCCTCTTTTGTTTGCGTATAATTTTT 58.026 29.630 0.00 0.00 0.00 1.94
1880 2322 5.918426 TTTTCCGTTTTTCCCTGTTTAGT 57.082 34.783 0.00 0.00 0.00 2.24
1881 2323 5.503662 TTTCCGTTTTTCCCTGTTTAGTC 57.496 39.130 0.00 0.00 0.00 2.59
1882 2324 4.426736 TCCGTTTTTCCCTGTTTAGTCT 57.573 40.909 0.00 0.00 0.00 3.24
1883 2325 4.131596 TCCGTTTTTCCCTGTTTAGTCTG 58.868 43.478 0.00 0.00 0.00 3.51
1884 2326 3.304458 CCGTTTTTCCCTGTTTAGTCTGC 60.304 47.826 0.00 0.00 0.00 4.26
1885 2327 3.606153 CGTTTTTCCCTGTTTAGTCTGCG 60.606 47.826 0.00 0.00 0.00 5.18
1886 2328 1.519408 TTTCCCTGTTTAGTCTGCGC 58.481 50.000 0.00 0.00 0.00 6.09
1887 2329 0.394938 TTCCCTGTTTAGTCTGCGCA 59.605 50.000 10.98 10.98 0.00 6.09
1888 2330 0.613260 TCCCTGTTTAGTCTGCGCAT 59.387 50.000 12.24 0.00 0.00 4.73
1889 2331 1.009829 CCCTGTTTAGTCTGCGCATC 58.990 55.000 12.24 7.68 0.00 3.91
1890 2332 1.675714 CCCTGTTTAGTCTGCGCATCA 60.676 52.381 12.24 0.00 0.00 3.07
1891 2333 1.662629 CCTGTTTAGTCTGCGCATCAG 59.337 52.381 12.24 10.67 44.21 2.90
1892 2334 1.061711 CTGTTTAGTCTGCGCATCAGC 59.938 52.381 12.24 1.05 42.56 4.26
1893 2335 1.338105 TGTTTAGTCTGCGCATCAGCT 60.338 47.619 12.24 9.43 42.56 4.24
1894 2336 1.325943 GTTTAGTCTGCGCATCAGCTC 59.674 52.381 12.24 0.00 42.56 4.09
1895 2337 0.820226 TTAGTCTGCGCATCAGCTCT 59.180 50.000 12.24 5.99 42.56 4.09
1896 2338 0.820226 TAGTCTGCGCATCAGCTCTT 59.180 50.000 12.24 0.00 42.56 2.85
1897 2339 0.036577 AGTCTGCGCATCAGCTCTTT 60.037 50.000 12.24 0.00 42.56 2.52
1898 2340 0.096628 GTCTGCGCATCAGCTCTTTG 59.903 55.000 12.24 0.00 42.56 2.77
1899 2341 0.321034 TCTGCGCATCAGCTCTTTGT 60.321 50.000 12.24 0.00 42.56 2.83
1900 2342 0.520404 CTGCGCATCAGCTCTTTGTT 59.480 50.000 12.24 0.00 39.10 2.83
1901 2343 0.239082 TGCGCATCAGCTCTTTGTTG 59.761 50.000 5.66 0.00 39.10 3.33
1902 2344 0.239347 GCGCATCAGCTCTTTGTTGT 59.761 50.000 0.30 0.00 39.10 3.32
1903 2345 1.959747 CGCATCAGCTCTTTGTTGTG 58.040 50.000 0.00 0.00 39.10 3.33
1904 2346 1.694639 GCATCAGCTCTTTGTTGTGC 58.305 50.000 0.00 0.00 37.91 4.57
1905 2347 1.268899 GCATCAGCTCTTTGTTGTGCT 59.731 47.619 0.00 0.00 37.27 4.40
1907 2349 3.174790 CAGCTCTTTGTTGTGCTGC 57.825 52.632 0.00 0.00 44.02 5.25
1908 2350 0.666913 CAGCTCTTTGTTGTGCTGCT 59.333 50.000 0.00 0.00 44.02 4.24
1909 2351 0.950116 AGCTCTTTGTTGTGCTGCTC 59.050 50.000 0.00 0.00 35.76 4.26
1910 2352 0.950116 GCTCTTTGTTGTGCTGCTCT 59.050 50.000 0.00 0.00 0.00 4.09
1911 2353 1.336125 GCTCTTTGTTGTGCTGCTCTT 59.664 47.619 0.00 0.00 0.00 2.85
1912 2354 2.223665 GCTCTTTGTTGTGCTGCTCTTT 60.224 45.455 0.00 0.00 0.00 2.52
1913 2355 3.369385 CTCTTTGTTGTGCTGCTCTTTG 58.631 45.455 0.00 0.00 0.00 2.77
1914 2356 2.754552 TCTTTGTTGTGCTGCTCTTTGT 59.245 40.909 0.00 0.00 0.00 2.83
1915 2357 3.193267 TCTTTGTTGTGCTGCTCTTTGTT 59.807 39.130 0.00 0.00 0.00 2.83
1916 2358 2.565210 TGTTGTGCTGCTCTTTGTTG 57.435 45.000 0.00 0.00 0.00 3.33
1917 2359 1.818060 TGTTGTGCTGCTCTTTGTTGT 59.182 42.857 0.00 0.00 0.00 3.32
1918 2360 2.187707 GTTGTGCTGCTCTTTGTTGTG 58.812 47.619 0.00 0.00 0.00 3.33
1919 2361 0.101040 TGTGCTGCTCTTTGTTGTGC 59.899 50.000 0.00 0.00 0.00 4.57
1920 2362 0.383231 GTGCTGCTCTTTGTTGTGCT 59.617 50.000 0.00 0.00 0.00 4.40
1921 2363 0.382873 TGCTGCTCTTTGTTGTGCTG 59.617 50.000 0.00 0.00 0.00 4.41
1922 2364 0.938168 GCTGCTCTTTGTTGTGCTGC 60.938 55.000 0.00 0.00 41.40 5.25
1923 2365 0.666913 CTGCTCTTTGTTGTGCTGCT 59.333 50.000 0.00 0.00 0.00 4.24
1924 2366 1.066605 CTGCTCTTTGTTGTGCTGCTT 59.933 47.619 0.00 0.00 0.00 3.91
1925 2367 1.477700 TGCTCTTTGTTGTGCTGCTTT 59.522 42.857 0.00 0.00 0.00 3.51
1926 2368 2.122564 GCTCTTTGTTGTGCTGCTTTC 58.877 47.619 0.00 0.00 0.00 2.62
1927 2369 2.735823 CTCTTTGTTGTGCTGCTTTCC 58.264 47.619 0.00 0.00 0.00 3.13
1928 2370 1.408702 TCTTTGTTGTGCTGCTTTCCC 59.591 47.619 0.00 0.00 0.00 3.97
1929 2371 1.410153 CTTTGTTGTGCTGCTTTCCCT 59.590 47.619 0.00 0.00 0.00 4.20
1930 2372 1.484038 TTGTTGTGCTGCTTTCCCTT 58.516 45.000 0.00 0.00 0.00 3.95
1931 2373 0.746063 TGTTGTGCTGCTTTCCCTTG 59.254 50.000 0.00 0.00 0.00 3.61
1932 2374 0.032540 GTTGTGCTGCTTTCCCTTGG 59.967 55.000 0.00 0.00 0.00 3.61
1933 2375 0.396974 TTGTGCTGCTTTCCCTTGGT 60.397 50.000 0.00 0.00 0.00 3.67
1934 2376 1.108727 TGTGCTGCTTTCCCTTGGTG 61.109 55.000 0.00 0.00 0.00 4.17
1935 2377 2.202395 TGCTGCTTTCCCTTGGTGC 61.202 57.895 0.00 0.00 0.00 5.01
1936 2378 2.935740 GCTGCTTTCCCTTGGTGCC 61.936 63.158 0.00 0.00 0.00 5.01
1937 2379 2.203625 TGCTTTCCCTTGGTGCCC 60.204 61.111 0.00 0.00 0.00 5.36
1938 2380 2.118294 GCTTTCCCTTGGTGCCCT 59.882 61.111 0.00 0.00 0.00 5.19
1939 2381 2.278330 GCTTTCCCTTGGTGCCCTG 61.278 63.158 0.00 0.00 0.00 4.45
1940 2382 2.203625 TTTCCCTTGGTGCCCTGC 60.204 61.111 0.00 0.00 0.00 4.85
1941 2383 3.080158 TTTCCCTTGGTGCCCTGCA 62.080 57.895 0.00 0.00 35.60 4.41
1942 2384 2.384933 TTTCCCTTGGTGCCCTGCAT 62.385 55.000 0.00 0.00 41.91 3.96
1943 2385 2.757099 CCCTTGGTGCCCTGCATC 60.757 66.667 0.00 0.00 41.91 3.91
1944 2386 2.357836 CCTTGGTGCCCTGCATCT 59.642 61.111 0.59 0.00 40.78 2.90
1945 2387 2.050350 CCTTGGTGCCCTGCATCTG 61.050 63.158 0.59 0.00 40.78 2.90
1946 2388 2.677524 TTGGTGCCCTGCATCTGC 60.678 61.111 0.59 0.00 40.78 4.26
1947 2389 4.746309 TGGTGCCCTGCATCTGCC 62.746 66.667 0.59 0.00 40.78 4.85
1948 2390 4.437587 GGTGCCCTGCATCTGCCT 62.438 66.667 0.00 0.00 41.91 4.75
1949 2391 2.827642 GTGCCCTGCATCTGCCTC 60.828 66.667 0.00 0.00 41.91 4.70
1950 2392 3.332385 TGCCCTGCATCTGCCTCA 61.332 61.111 0.00 0.00 41.18 3.86
1951 2393 2.516460 GCCCTGCATCTGCCTCAG 60.516 66.667 0.00 0.00 41.18 3.35
1952 2394 2.996395 CCCTGCATCTGCCTCAGT 59.004 61.111 0.00 0.00 41.18 3.41
1953 2395 1.976132 GCCCTGCATCTGCCTCAGTA 61.976 60.000 0.00 0.00 41.18 2.74
1954 2396 0.543277 CCCTGCATCTGCCTCAGTAA 59.457 55.000 0.00 0.00 41.18 2.24
1955 2397 1.142465 CCCTGCATCTGCCTCAGTAAT 59.858 52.381 0.00 0.00 41.18 1.89
1956 2398 2.422519 CCCTGCATCTGCCTCAGTAATT 60.423 50.000 0.00 0.00 41.18 1.40
1957 2399 3.181451 CCCTGCATCTGCCTCAGTAATTA 60.181 47.826 0.00 0.00 41.18 1.40
1958 2400 4.454678 CCTGCATCTGCCTCAGTAATTAA 58.545 43.478 0.00 0.00 41.18 1.40
1959 2401 4.274459 CCTGCATCTGCCTCAGTAATTAAC 59.726 45.833 0.00 0.00 41.18 2.01
1960 2402 3.871006 TGCATCTGCCTCAGTAATTAACG 59.129 43.478 0.00 0.00 41.18 3.18
1961 2403 3.248602 GCATCTGCCTCAGTAATTAACGG 59.751 47.826 0.00 0.00 32.61 4.44
1962 2404 4.693283 CATCTGCCTCAGTAATTAACGGA 58.307 43.478 0.00 0.00 32.61 4.69
1963 2405 4.119442 TCTGCCTCAGTAATTAACGGAC 57.881 45.455 0.00 0.00 32.61 4.79
1964 2406 2.858344 CTGCCTCAGTAATTAACGGACG 59.142 50.000 0.00 0.00 0.00 4.79
1965 2407 1.591619 GCCTCAGTAATTAACGGACGC 59.408 52.381 0.00 0.00 30.30 5.19
1966 2408 2.883574 CCTCAGTAATTAACGGACGCA 58.116 47.619 0.00 0.00 0.00 5.24
1967 2409 3.454375 CCTCAGTAATTAACGGACGCAT 58.546 45.455 0.00 0.00 0.00 4.73
1968 2410 3.245284 CCTCAGTAATTAACGGACGCATG 59.755 47.826 0.00 0.00 0.00 4.06
1969 2411 2.605818 TCAGTAATTAACGGACGCATGC 59.394 45.455 7.91 7.91 0.00 4.06
1970 2412 2.350192 CAGTAATTAACGGACGCATGCA 59.650 45.455 19.57 0.00 0.00 3.96
1971 2413 2.350498 AGTAATTAACGGACGCATGCAC 59.650 45.455 19.57 10.85 0.00 4.57
1972 2414 0.096281 AATTAACGGACGCATGCACG 59.904 50.000 19.57 20.06 39.50 5.34
1973 2415 1.701545 ATTAACGGACGCATGCACGG 61.702 55.000 24.06 19.27 37.37 4.94
1986 2428 4.694233 CACGGCTGCAGCAGGACT 62.694 66.667 36.25 17.85 44.36 3.85
1987 2429 4.385405 ACGGCTGCAGCAGGACTC 62.385 66.667 36.25 19.84 44.36 3.36
1989 2431 4.025858 GGCTGCAGCAGGACTCCA 62.026 66.667 37.63 0.00 44.36 3.86
1990 2432 2.436292 GCTGCAGCAGGACTCCAG 60.436 66.667 33.36 0.00 41.59 3.86
1991 2433 2.436292 CTGCAGCAGGACTCCAGC 60.436 66.667 15.35 4.26 36.23 4.85
1992 2434 3.972971 CTGCAGCAGGACTCCAGCC 62.973 68.421 15.35 0.00 36.67 4.85
1993 2435 4.025858 GCAGCAGGACTCCAGCCA 62.026 66.667 8.79 0.00 36.67 4.75
1994 2436 2.752358 CAGCAGGACTCCAGCCAA 59.248 61.111 8.79 0.00 36.67 4.52
1995 2437 1.302285 CAGCAGGACTCCAGCCAAT 59.698 57.895 8.79 0.00 36.67 3.16
1996 2438 0.747283 CAGCAGGACTCCAGCCAATC 60.747 60.000 8.79 0.00 36.67 2.67
1997 2439 1.452833 GCAGGACTCCAGCCAATCC 60.453 63.158 0.83 0.00 29.40 3.01
1998 2440 1.993653 CAGGACTCCAGCCAATCCA 59.006 57.895 0.00 0.00 33.33 3.41
1999 2441 0.107312 CAGGACTCCAGCCAATCCAG 60.107 60.000 0.00 0.00 33.33 3.86
2000 2442 0.252881 AGGACTCCAGCCAATCCAGA 60.253 55.000 0.00 0.00 33.33 3.86
2001 2443 0.179936 GGACTCCAGCCAATCCAGAG 59.820 60.000 0.00 0.00 0.00 3.35
2002 2444 0.463474 GACTCCAGCCAATCCAGAGC 60.463 60.000 0.00 0.00 0.00 4.09
2003 2445 1.523258 CTCCAGCCAATCCAGAGCG 60.523 63.158 0.00 0.00 0.00 5.03
2004 2446 2.515523 CCAGCCAATCCAGAGCGG 60.516 66.667 0.00 0.00 0.00 5.52
2005 2447 3.207669 CAGCCAATCCAGAGCGGC 61.208 66.667 0.00 0.00 45.23 6.53
2007 2449 2.517875 GCCAATCCAGAGCGGCAT 60.518 61.111 1.45 0.00 44.25 4.40
2008 2450 2.842256 GCCAATCCAGAGCGGCATG 61.842 63.158 1.45 0.00 44.25 4.06
2009 2451 2.719979 CAATCCAGAGCGGCATGC 59.280 61.111 9.90 9.90 46.98 4.06
2020 2462 4.845447 GGCATGCAGATGGGCCCA 62.845 66.667 30.92 30.92 40.55 5.36
2021 2463 2.760799 GCATGCAGATGGGCCCAA 60.761 61.111 32.58 13.18 0.00 4.12
2022 2464 2.792947 GCATGCAGATGGGCCCAAG 61.793 63.158 32.58 22.65 0.00 3.61
2023 2465 2.443390 ATGCAGATGGGCCCAAGC 60.443 61.111 32.58 30.99 38.76 4.01
2040 2482 4.776322 CCATGCGCGTGGGGAAGA 62.776 66.667 36.30 0.00 35.55 2.87
2041 2483 3.197790 CATGCGCGTGGGGAAGAG 61.198 66.667 22.09 0.00 0.00 2.85
2042 2484 3.390521 ATGCGCGTGGGGAAGAGA 61.391 61.111 8.43 0.00 0.00 3.10
2043 2485 2.954684 ATGCGCGTGGGGAAGAGAA 61.955 57.895 8.43 0.00 0.00 2.87
2044 2486 2.358247 GCGCGTGGGGAAGAGAAA 60.358 61.111 8.43 0.00 0.00 2.52
2045 2487 1.964373 GCGCGTGGGGAAGAGAAAA 60.964 57.895 8.43 0.00 0.00 2.29
2046 2488 1.912371 GCGCGTGGGGAAGAGAAAAG 61.912 60.000 8.43 0.00 0.00 2.27
2047 2489 1.298859 CGCGTGGGGAAGAGAAAAGG 61.299 60.000 0.00 0.00 0.00 3.11
2048 2490 0.960861 GCGTGGGGAAGAGAAAAGGG 60.961 60.000 0.00 0.00 0.00 3.95
2049 2491 0.322546 CGTGGGGAAGAGAAAAGGGG 60.323 60.000 0.00 0.00 0.00 4.79
2050 2492 1.073098 GTGGGGAAGAGAAAAGGGGA 58.927 55.000 0.00 0.00 0.00 4.81
2051 2493 1.073098 TGGGGAAGAGAAAAGGGGAC 58.927 55.000 0.00 0.00 0.00 4.46
2064 2506 2.677848 GGGACCAAAGGAGCCTCC 59.322 66.667 1.26 1.26 36.58 4.30
2065 2507 2.677848 GGACCAAAGGAGCCTCCC 59.322 66.667 7.26 0.00 37.19 4.30
2066 2508 2.231380 GGACCAAAGGAGCCTCCCA 61.231 63.158 7.26 0.00 37.19 4.37
2067 2509 1.767692 GACCAAAGGAGCCTCCCAA 59.232 57.895 7.26 0.00 37.19 4.12
2068 2510 0.332972 GACCAAAGGAGCCTCCCAAT 59.667 55.000 7.26 0.00 37.19 3.16
2069 2511 0.332972 ACCAAAGGAGCCTCCCAATC 59.667 55.000 7.26 0.00 37.19 2.67
2070 2512 0.332632 CCAAAGGAGCCTCCCAATCA 59.667 55.000 7.26 0.00 37.19 2.57
2071 2513 1.467920 CAAAGGAGCCTCCCAATCAC 58.532 55.000 7.26 0.00 37.19 3.06
2072 2514 0.332972 AAAGGAGCCTCCCAATCACC 59.667 55.000 7.26 0.00 37.19 4.02
2073 2515 1.575447 AAGGAGCCTCCCAATCACCC 61.575 60.000 7.26 0.00 37.19 4.61
2074 2516 2.190578 GAGCCTCCCAATCACCCG 59.809 66.667 0.00 0.00 0.00 5.28
2075 2517 4.115199 AGCCTCCCAATCACCCGC 62.115 66.667 0.00 0.00 0.00 6.13
2076 2518 4.424711 GCCTCCCAATCACCCGCA 62.425 66.667 0.00 0.00 0.00 5.69
2077 2519 2.597340 CCTCCCAATCACCCGCAT 59.403 61.111 0.00 0.00 0.00 4.73
2078 2520 1.825191 CCTCCCAATCACCCGCATG 60.825 63.158 0.00 0.00 0.00 4.06
2079 2521 2.440065 TCCCAATCACCCGCATGC 60.440 61.111 7.91 7.91 0.00 4.06
2080 2522 2.755064 CCCAATCACCCGCATGCA 60.755 61.111 19.57 0.00 0.00 3.96
2081 2523 2.777972 CCCAATCACCCGCATGCAG 61.778 63.158 19.57 10.96 0.00 4.41
2082 2524 2.103538 CAATCACCCGCATGCAGC 59.896 61.111 19.57 0.00 40.87 5.25
2083 2525 2.044650 AATCACCCGCATGCAGCT 60.045 55.556 19.57 0.00 42.61 4.24
2084 2526 1.096967 CAATCACCCGCATGCAGCTA 61.097 55.000 19.57 0.00 42.61 3.32
2085 2527 0.179009 AATCACCCGCATGCAGCTAT 60.179 50.000 19.57 1.01 42.61 2.97
2086 2528 0.179009 ATCACCCGCATGCAGCTATT 60.179 50.000 19.57 0.00 42.61 1.73
2087 2529 1.096967 TCACCCGCATGCAGCTATTG 61.097 55.000 19.57 5.50 42.61 1.90
2088 2530 1.096967 CACCCGCATGCAGCTATTGA 61.097 55.000 19.57 0.00 42.61 2.57
2089 2531 1.097547 ACCCGCATGCAGCTATTGAC 61.098 55.000 19.57 0.00 42.61 3.18
2090 2532 0.816825 CCCGCATGCAGCTATTGACT 60.817 55.000 19.57 0.00 42.61 3.41
2091 2533 0.306840 CCGCATGCAGCTATTGACTG 59.693 55.000 19.57 0.00 42.61 3.51
2092 2534 0.306840 CGCATGCAGCTATTGACTGG 59.693 55.000 19.57 0.00 42.61 4.00
2093 2535 1.386533 GCATGCAGCTATTGACTGGT 58.613 50.000 14.21 0.00 41.15 4.00
2094 2536 1.747355 GCATGCAGCTATTGACTGGTT 59.253 47.619 14.21 0.00 41.15 3.67
2095 2537 2.479049 GCATGCAGCTATTGACTGGTTG 60.479 50.000 14.21 0.00 41.15 3.77
2096 2538 1.167851 TGCAGCTATTGACTGGTTGC 58.832 50.000 0.00 0.00 41.90 4.17
2097 2539 1.167851 GCAGCTATTGACTGGTTGCA 58.832 50.000 0.00 0.00 41.32 4.08
2098 2540 1.747355 GCAGCTATTGACTGGTTGCAT 59.253 47.619 0.00 0.00 41.32 3.96
2099 2541 2.165030 GCAGCTATTGACTGGTTGCATT 59.835 45.455 0.00 0.00 41.32 3.56
2100 2542 3.766151 CAGCTATTGACTGGTTGCATTG 58.234 45.455 0.00 0.00 0.00 2.82
2101 2543 3.441222 CAGCTATTGACTGGTTGCATTGA 59.559 43.478 0.00 0.00 0.00 2.57
2102 2544 3.693085 AGCTATTGACTGGTTGCATTGAG 59.307 43.478 0.00 0.00 0.00 3.02
2103 2545 3.733077 GCTATTGACTGGTTGCATTGAGC 60.733 47.826 0.00 0.00 45.96 4.26
2118 2560 5.708948 GCATTGAGCAATTAAACTACCACA 58.291 37.500 0.00 0.00 44.79 4.17
2119 2561 6.332630 GCATTGAGCAATTAAACTACCACAT 58.667 36.000 0.00 0.00 44.79 3.21
2120 2562 6.473455 GCATTGAGCAATTAAACTACCACATC 59.527 38.462 0.00 0.00 44.79 3.06
2121 2563 7.629222 GCATTGAGCAATTAAACTACCACATCT 60.629 37.037 0.00 0.00 44.79 2.90
2122 2564 6.985188 TGAGCAATTAAACTACCACATCTC 57.015 37.500 0.00 0.00 0.00 2.75
2123 2565 6.711277 TGAGCAATTAAACTACCACATCTCT 58.289 36.000 0.00 0.00 0.00 3.10
2124 2566 6.818644 TGAGCAATTAAACTACCACATCTCTC 59.181 38.462 0.00 0.00 0.00 3.20
2125 2567 6.116126 AGCAATTAAACTACCACATCTCTCC 58.884 40.000 0.00 0.00 0.00 3.71
2126 2568 5.006746 GCAATTAAACTACCACATCTCTCCG 59.993 44.000 0.00 0.00 0.00 4.63
2127 2569 6.338146 CAATTAAACTACCACATCTCTCCGA 58.662 40.000 0.00 0.00 0.00 4.55
2128 2570 6.732896 ATTAAACTACCACATCTCTCCGAT 57.267 37.500 0.00 0.00 0.00 4.18
2137 2579 3.375782 CATCTCTCCGATGCATGTACA 57.624 47.619 2.46 0.00 42.75 2.90
2138 2580 3.315418 CATCTCTCCGATGCATGTACAG 58.685 50.000 2.46 0.00 42.75 2.74
2139 2581 1.683385 TCTCTCCGATGCATGTACAGG 59.317 52.381 2.46 2.43 0.00 4.00
2140 2582 0.752658 TCTCCGATGCATGTACAGGG 59.247 55.000 2.46 1.13 0.00 4.45
2141 2583 0.250038 CTCCGATGCATGTACAGGGG 60.250 60.000 2.46 1.90 0.00 4.79
2142 2584 1.893808 CCGATGCATGTACAGGGGC 60.894 63.158 2.46 9.58 0.00 5.80
2143 2585 1.153188 CGATGCATGTACAGGGGCA 60.153 57.895 18.24 18.24 41.00 5.36
2144 2586 0.747644 CGATGCATGTACAGGGGCAA 60.748 55.000 19.38 7.35 40.02 4.52
2145 2587 1.696063 GATGCATGTACAGGGGCAAT 58.304 50.000 19.38 10.77 40.02 3.56
2146 2588 2.810032 CGATGCATGTACAGGGGCAATA 60.810 50.000 19.38 2.00 40.02 1.90
2147 2589 3.424703 GATGCATGTACAGGGGCAATAT 58.575 45.455 19.38 7.29 40.02 1.28
2148 2590 4.588899 GATGCATGTACAGGGGCAATATA 58.411 43.478 19.38 1.39 40.02 0.86
2149 2591 4.019792 TGCATGTACAGGGGCAATATAG 57.980 45.455 14.88 0.00 32.54 1.31
2150 2592 3.394274 TGCATGTACAGGGGCAATATAGT 59.606 43.478 14.88 0.00 32.54 2.12
2151 2593 4.003648 GCATGTACAGGGGCAATATAGTC 58.996 47.826 9.91 0.00 0.00 2.59
2152 2594 4.579869 CATGTACAGGGGCAATATAGTCC 58.420 47.826 0.33 0.00 0.00 3.85
2153 2595 2.631062 TGTACAGGGGCAATATAGTCCG 59.369 50.000 0.00 0.00 32.78 4.79
2154 2596 2.097110 ACAGGGGCAATATAGTCCGA 57.903 50.000 0.00 0.00 32.78 4.55
2155 2597 2.404559 ACAGGGGCAATATAGTCCGAA 58.595 47.619 0.00 0.00 32.78 4.30
2156 2598 2.775384 ACAGGGGCAATATAGTCCGAAA 59.225 45.455 0.00 0.00 32.78 3.46
2157 2599 3.201266 ACAGGGGCAATATAGTCCGAAAA 59.799 43.478 0.00 0.00 32.78 2.29
2158 2600 4.204012 CAGGGGCAATATAGTCCGAAAAA 58.796 43.478 0.00 0.00 32.78 1.94
2159 2601 4.275936 CAGGGGCAATATAGTCCGAAAAAG 59.724 45.833 0.00 0.00 32.78 2.27
2160 2602 4.165372 AGGGGCAATATAGTCCGAAAAAGA 59.835 41.667 0.00 0.00 32.78 2.52
2161 2603 5.070685 GGGGCAATATAGTCCGAAAAAGAT 58.929 41.667 0.00 0.00 32.78 2.40
2162 2604 5.048713 GGGGCAATATAGTCCGAAAAAGATG 60.049 44.000 0.00 0.00 32.78 2.90
2163 2605 5.452777 GGCAATATAGTCCGAAAAAGATGC 58.547 41.667 0.00 0.00 0.00 3.91
2164 2606 5.008613 GGCAATATAGTCCGAAAAAGATGCA 59.991 40.000 0.00 0.00 0.00 3.96
2165 2607 6.294176 GGCAATATAGTCCGAAAAAGATGCAT 60.294 38.462 0.00 0.00 0.00 3.96
2166 2608 6.580041 GCAATATAGTCCGAAAAAGATGCATG 59.420 38.462 2.46 0.00 0.00 4.06
2167 2609 2.927553 AGTCCGAAAAAGATGCATGC 57.072 45.000 11.82 11.82 0.00 4.06
2168 2610 2.161855 AGTCCGAAAAAGATGCATGCA 58.838 42.857 25.04 25.04 0.00 3.96
2169 2611 2.163010 AGTCCGAAAAAGATGCATGCAG 59.837 45.455 26.69 9.39 0.00 4.41
2170 2612 2.095059 GTCCGAAAAAGATGCATGCAGT 60.095 45.455 26.69 13.10 0.00 4.40
2171 2613 2.162208 TCCGAAAAAGATGCATGCAGTC 59.838 45.455 26.69 21.13 0.00 3.51
2172 2614 2.523015 CGAAAAAGATGCATGCAGTCC 58.477 47.619 26.69 16.76 0.00 3.85
2173 2615 2.733227 CGAAAAAGATGCATGCAGTCCC 60.733 50.000 26.69 14.30 0.00 4.46
2174 2616 2.226962 AAAAGATGCATGCAGTCCCT 57.773 45.000 26.69 16.26 0.00 4.20
2175 2617 1.760192 AAAGATGCATGCAGTCCCTC 58.240 50.000 26.69 17.64 0.00 4.30
2176 2618 0.106819 AAGATGCATGCAGTCCCTCC 60.107 55.000 26.69 8.51 0.00 4.30
2177 2619 0.987081 AGATGCATGCAGTCCCTCCT 60.987 55.000 26.69 6.16 0.00 3.69
2178 2620 0.106819 GATGCATGCAGTCCCTCCTT 60.107 55.000 26.69 5.33 0.00 3.36
2179 2621 0.395311 ATGCATGCAGTCCCTCCTTG 60.395 55.000 26.69 0.00 0.00 3.61
2180 2622 1.751927 GCATGCAGTCCCTCCTTGG 60.752 63.158 14.21 0.00 0.00 3.61
2181 2623 1.687612 CATGCAGTCCCTCCTTGGT 59.312 57.895 0.00 0.00 0.00 3.67
2182 2624 0.911769 CATGCAGTCCCTCCTTGGTA 59.088 55.000 0.00 0.00 0.00 3.25
2183 2625 1.492176 CATGCAGTCCCTCCTTGGTAT 59.508 52.381 0.00 0.00 0.00 2.73
2184 2626 1.204146 TGCAGTCCCTCCTTGGTATC 58.796 55.000 0.00 0.00 0.00 2.24
2185 2627 0.470341 GCAGTCCCTCCTTGGTATCC 59.530 60.000 0.00 0.00 0.00 2.59
2186 2628 0.753262 CAGTCCCTCCTTGGTATCCG 59.247 60.000 0.00 0.00 0.00 4.18
2187 2629 0.398664 AGTCCCTCCTTGGTATCCGG 60.399 60.000 0.00 0.00 0.00 5.14
2188 2630 1.074775 TCCCTCCTTGGTATCCGGG 60.075 63.158 0.00 0.00 0.00 5.73
2189 2631 2.819284 CCCTCCTTGGTATCCGGGC 61.819 68.421 0.00 0.00 0.00 6.13
2190 2632 1.766461 CCTCCTTGGTATCCGGGCT 60.766 63.158 0.00 0.00 0.00 5.19
2191 2633 1.345715 CCTCCTTGGTATCCGGGCTT 61.346 60.000 0.00 0.00 0.00 4.35
2192 2634 0.106894 CTCCTTGGTATCCGGGCTTC 59.893 60.000 0.00 0.00 0.00 3.86
2193 2635 0.326238 TCCTTGGTATCCGGGCTTCT 60.326 55.000 0.00 0.00 0.00 2.85
2194 2636 0.106894 CCTTGGTATCCGGGCTTCTC 59.893 60.000 0.00 0.00 0.00 2.87
2195 2637 0.106894 CTTGGTATCCGGGCTTCTCC 59.893 60.000 0.00 0.00 0.00 3.71
2196 2638 0.326238 TTGGTATCCGGGCTTCTCCT 60.326 55.000 0.00 0.00 34.39 3.69
2197 2639 0.326238 TGGTATCCGGGCTTCTCCTT 60.326 55.000 0.00 0.00 34.39 3.36
2198 2640 1.062734 TGGTATCCGGGCTTCTCCTTA 60.063 52.381 0.00 0.00 34.39 2.69
2199 2641 2.258109 GGTATCCGGGCTTCTCCTTAT 58.742 52.381 0.00 0.00 34.39 1.73
2200 2642 3.181415 TGGTATCCGGGCTTCTCCTTATA 60.181 47.826 0.00 0.00 34.39 0.98
2201 2643 3.195182 GGTATCCGGGCTTCTCCTTATAC 59.805 52.174 0.00 0.00 34.39 1.47
2202 2644 1.325355 TCCGGGCTTCTCCTTATACG 58.675 55.000 0.00 0.00 34.39 3.06
2203 2645 0.319641 CCGGGCTTCTCCTTATACGC 60.320 60.000 0.00 0.00 34.39 4.42
2204 2646 0.387929 CGGGCTTCTCCTTATACGCA 59.612 55.000 0.00 0.00 34.39 5.24
2205 2647 1.603172 CGGGCTTCTCCTTATACGCAG 60.603 57.143 0.00 0.00 34.39 5.18
2206 2648 1.687123 GGGCTTCTCCTTATACGCAGA 59.313 52.381 0.00 0.00 34.39 4.26
2207 2649 2.288518 GGGCTTCTCCTTATACGCAGAG 60.289 54.545 0.00 0.00 34.39 3.35
2208 2650 2.623889 GGCTTCTCCTTATACGCAGAGA 59.376 50.000 0.00 0.00 33.65 3.10
2209 2651 3.068307 GGCTTCTCCTTATACGCAGAGAA 59.932 47.826 0.00 0.00 41.74 2.87
2210 2652 4.441634 GGCTTCTCCTTATACGCAGAGAAA 60.442 45.833 0.00 0.00 42.95 2.52
2211 2653 5.109903 GCTTCTCCTTATACGCAGAGAAAA 58.890 41.667 0.00 0.00 42.95 2.29
2212 2654 5.581085 GCTTCTCCTTATACGCAGAGAAAAA 59.419 40.000 0.00 0.00 42.95 1.94
2264 2706 8.744652 TGTAAAAGAAGTCATTTTCAAGGTTCA 58.255 29.630 0.00 0.00 32.38 3.18
2296 2752 7.860918 AGAGAGTACAAGATCACGTACATAA 57.139 36.000 20.45 0.00 40.37 1.90
2299 2755 8.858003 AGAGTACAAGATCACGTACATAAATG 57.142 34.615 20.45 0.00 40.37 2.32
2300 2756 8.467598 AGAGTACAAGATCACGTACATAAATGT 58.532 33.333 20.45 0.63 44.48 2.71
2310 2766 9.847706 ATCACGTACATAAATGTTGCAAATTTA 57.152 25.926 19.66 19.66 41.97 1.40
2378 2834 5.441718 AAAAGAGCCAACTCCATCAGATA 57.558 39.130 0.00 0.00 44.65 1.98
2425 2882 4.778534 AACTCCAACAGATGATGCAAAG 57.221 40.909 0.00 0.00 0.00 2.77
2428 2885 3.753815 TCCAACAGATGATGCAAAGTGA 58.246 40.909 0.00 0.00 0.00 3.41
2433 2890 5.562506 ACAGATGATGCAAAGTGAAGATG 57.437 39.130 0.00 0.00 0.00 2.90
2440 2897 7.036996 TGATGCAAAGTGAAGATGTAAAACA 57.963 32.000 0.00 0.00 0.00 2.83
2441 2898 7.487484 TGATGCAAAGTGAAGATGTAAAACAA 58.513 30.769 0.00 0.00 0.00 2.83
2442 2899 7.978414 TGATGCAAAGTGAAGATGTAAAACAAA 59.022 29.630 0.00 0.00 0.00 2.83
2443 2900 8.715191 ATGCAAAGTGAAGATGTAAAACAAAA 57.285 26.923 0.00 0.00 0.00 2.44
2444 2901 7.958674 TGCAAAGTGAAGATGTAAAACAAAAC 58.041 30.769 0.00 0.00 0.00 2.43
2445 2902 7.600375 TGCAAAGTGAAGATGTAAAACAAAACA 59.400 29.630 0.00 0.00 0.00 2.83
2446 2903 8.603181 GCAAAGTGAAGATGTAAAACAAAACAT 58.397 29.630 0.00 0.00 39.00 2.71
2455 2912 8.568732 GATGTAAAACAAAACATCCGAAAAGA 57.431 30.769 4.48 0.00 44.01 2.52
2456 2913 8.934507 ATGTAAAACAAAACATCCGAAAAGAA 57.065 26.923 0.00 0.00 30.54 2.52
2457 2914 8.175649 TGTAAAACAAAACATCCGAAAAGAAC 57.824 30.769 0.00 0.00 0.00 3.01
2458 2915 8.030106 TGTAAAACAAAACATCCGAAAAGAACT 58.970 29.630 0.00 0.00 0.00 3.01
2459 2916 7.899178 AAAACAAAACATCCGAAAAGAACTT 57.101 28.000 0.00 0.00 0.00 2.66
2460 2917 8.989653 AAAACAAAACATCCGAAAAGAACTTA 57.010 26.923 0.00 0.00 0.00 2.24
2461 2918 8.989653 AAACAAAACATCCGAAAAGAACTTAA 57.010 26.923 0.00 0.00 0.00 1.85
2462 2919 8.989653 AACAAAACATCCGAAAAGAACTTAAA 57.010 26.923 0.00 0.00 0.00 1.52
2463 2920 8.989653 ACAAAACATCCGAAAAGAACTTAAAA 57.010 26.923 0.00 0.00 0.00 1.52
2464 2921 9.594478 ACAAAACATCCGAAAAGAACTTAAAAT 57.406 25.926 0.00 0.00 0.00 1.82
2475 2932 9.914923 GAAAAGAACTTAAAATTTTCGCATGTT 57.085 25.926 6.72 5.10 33.47 2.71
2476 2933 9.914923 AAAAGAACTTAAAATTTTCGCATGTTC 57.085 25.926 6.72 13.00 33.64 3.18
2477 2934 8.641499 AAGAACTTAAAATTTTCGCATGTTCA 57.359 26.923 21.18 0.00 35.24 3.18
2478 2935 8.061125 AGAACTTAAAATTTTCGCATGTTCAC 57.939 30.769 21.18 7.20 35.24 3.18
2479 2936 7.704472 AGAACTTAAAATTTTCGCATGTTCACA 59.296 29.630 21.18 0.00 35.24 3.58
2480 2937 7.763172 ACTTAAAATTTTCGCATGTTCACAA 57.237 28.000 6.72 0.00 0.00 3.33
2481 2938 8.364129 ACTTAAAATTTTCGCATGTTCACAAT 57.636 26.923 6.72 0.00 0.00 2.71
2482 2939 9.469807 ACTTAAAATTTTCGCATGTTCACAATA 57.530 25.926 6.72 0.00 0.00 1.90
2485 2942 8.531622 AAAATTTTCGCATGTTCACAATATCA 57.468 26.923 0.00 0.00 0.00 2.15
2486 2943 8.531622 AAATTTTCGCATGTTCACAATATCAA 57.468 26.923 0.00 0.00 0.00 2.57
2487 2944 8.531622 AATTTTCGCATGTTCACAATATCAAA 57.468 26.923 0.00 0.00 0.00 2.69
2488 2945 8.706492 ATTTTCGCATGTTCACAATATCAAAT 57.294 26.923 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.509690 CGCATGATCATCCTAACAAAAGATAAT 58.490 33.333 4.86 0.00 0.00 1.28
4 5 7.714813 TCGCATGATCATCCTAACAAAAGATAA 59.285 33.333 4.86 0.00 0.00 1.75
5 6 7.216494 TCGCATGATCATCCTAACAAAAGATA 58.784 34.615 4.86 0.00 0.00 1.98
6 7 6.057533 TCGCATGATCATCCTAACAAAAGAT 58.942 36.000 4.86 0.00 0.00 2.40
7 8 5.427378 TCGCATGATCATCCTAACAAAAGA 58.573 37.500 4.86 0.00 0.00 2.52
8 9 5.739752 TCGCATGATCATCCTAACAAAAG 57.260 39.130 4.86 0.00 0.00 2.27
22 23 1.806542 GCGGTATTTGGATCGCATGAT 59.193 47.619 0.00 0.00 46.33 2.45
23 24 1.225855 GCGGTATTTGGATCGCATGA 58.774 50.000 0.00 0.00 46.33 3.07
24 25 3.753774 GCGGTATTTGGATCGCATG 57.246 52.632 0.00 0.00 46.33 4.06
28 29 0.943673 TGCATGCGGTATTTGGATCG 59.056 50.000 14.09 0.00 0.00 3.69
29 30 2.221169 TCTGCATGCGGTATTTGGATC 58.779 47.619 25.42 0.00 0.00 3.36
30 31 2.346766 TCTGCATGCGGTATTTGGAT 57.653 45.000 25.42 0.00 0.00 3.41
31 32 2.346766 ATCTGCATGCGGTATTTGGA 57.653 45.000 25.42 5.32 0.00 3.53
32 33 3.441496 AAATCTGCATGCGGTATTTGG 57.559 42.857 25.42 2.43 0.00 3.28
33 34 7.467557 AATAAAAATCTGCATGCGGTATTTG 57.532 32.000 25.42 3.77 0.00 2.32
34 35 8.491331 AAAATAAAAATCTGCATGCGGTATTT 57.509 26.923 25.42 22.94 0.00 1.40
35 36 7.763528 TGAAAATAAAAATCTGCATGCGGTATT 59.236 29.630 25.42 19.14 0.00 1.89
36 37 7.264221 TGAAAATAAAAATCTGCATGCGGTAT 58.736 30.769 25.42 14.71 0.00 2.73
37 38 6.625362 TGAAAATAAAAATCTGCATGCGGTA 58.375 32.000 25.42 13.08 0.00 4.02
38 39 5.477510 TGAAAATAAAAATCTGCATGCGGT 58.522 33.333 25.42 10.79 0.00 5.68
39 40 5.577945 ACTGAAAATAAAAATCTGCATGCGG 59.422 36.000 21.02 21.02 0.00 5.69
40 41 6.454583 CCACTGAAAATAAAAATCTGCATGCG 60.455 38.462 14.09 8.20 0.00 4.73
41 42 6.183360 CCCACTGAAAATAAAAATCTGCATGC 60.183 38.462 11.82 11.82 0.00 4.06
42 43 7.063780 GTCCCACTGAAAATAAAAATCTGCATG 59.936 37.037 0.00 0.00 0.00 4.06
43 44 7.038799 AGTCCCACTGAAAATAAAAATCTGCAT 60.039 33.333 0.00 0.00 0.00 3.96
44 45 6.267471 AGTCCCACTGAAAATAAAAATCTGCA 59.733 34.615 0.00 0.00 0.00 4.41
45 46 6.691508 AGTCCCACTGAAAATAAAAATCTGC 58.308 36.000 0.00 0.00 0.00 4.26
46 47 9.196552 GAAAGTCCCACTGAAAATAAAAATCTG 57.803 33.333 0.00 0.00 0.00 2.90
47 48 8.923270 TGAAAGTCCCACTGAAAATAAAAATCT 58.077 29.630 0.00 0.00 0.00 2.40
48 49 9.196552 CTGAAAGTCCCACTGAAAATAAAAATC 57.803 33.333 0.00 0.00 0.00 2.17
68 69 3.381272 TGAACTCTTTTGCCCACTGAAAG 59.619 43.478 0.00 0.00 42.29 2.62
69 70 3.360867 TGAACTCTTTTGCCCACTGAAA 58.639 40.909 0.00 0.00 0.00 2.69
70 71 3.011566 TGAACTCTTTTGCCCACTGAA 57.988 42.857 0.00 0.00 0.00 3.02
71 72 2.727123 TGAACTCTTTTGCCCACTGA 57.273 45.000 0.00 0.00 0.00 3.41
72 73 6.757897 TTATATGAACTCTTTTGCCCACTG 57.242 37.500 0.00 0.00 0.00 3.66
73 74 7.775053 TTTTATATGAACTCTTTTGCCCACT 57.225 32.000 0.00 0.00 0.00 4.00
97 98 1.298859 GGCCGCGTGTCTCTCATTTT 61.299 55.000 4.92 0.00 0.00 1.82
101 102 4.056125 CAGGCCGCGTGTCTCTCA 62.056 66.667 4.92 0.00 0.00 3.27
161 162 1.686325 TTCTATGGGCGTGGAGGCTC 61.686 60.000 5.78 5.78 45.89 4.70
163 164 1.523938 GTTCTATGGGCGTGGAGGC 60.524 63.158 0.00 0.00 45.91 4.70
222 223 0.041663 CTTGGTTTGGTGCACGTACG 60.042 55.000 15.01 15.01 0.00 3.67
224 225 1.588674 CTCTTGGTTTGGTGCACGTA 58.411 50.000 11.45 0.00 0.00 3.57
225 226 1.724582 GCTCTTGGTTTGGTGCACGT 61.725 55.000 11.45 0.00 0.00 4.49
227 228 1.363807 GGCTCTTGGTTTGGTGCAC 59.636 57.895 8.80 8.80 0.00 4.57
228 229 1.832167 GGGCTCTTGGTTTGGTGCA 60.832 57.895 0.00 0.00 0.00 4.57
229 230 1.398958 TTGGGCTCTTGGTTTGGTGC 61.399 55.000 0.00 0.00 0.00 5.01
274 277 3.057596 GCAGAACGTTTGATGATGGGAAA 60.058 43.478 0.46 0.00 0.00 3.13
275 278 2.487762 GCAGAACGTTTGATGATGGGAA 59.512 45.455 0.46 0.00 0.00 3.97
277 280 1.133025 GGCAGAACGTTTGATGATGGG 59.867 52.381 0.46 0.00 0.00 4.00
390 393 1.291588 GGAGATGCGCGGATCAGAT 59.708 57.895 36.61 20.48 0.00 2.90
398 401 1.016130 AGTGAAAGTGGAGATGCGCG 61.016 55.000 0.00 0.00 0.00 6.86
460 490 5.463061 CCTTGCAGGTGTTAATTTGTTTGAG 59.537 40.000 0.00 0.00 0.00 3.02
463 493 4.126437 GCCTTGCAGGTGTTAATTTGTTT 58.874 39.130 0.00 0.00 37.80 2.83
467 497 1.272212 CGGCCTTGCAGGTGTTAATTT 59.728 47.619 0.00 0.00 37.80 1.82
489 519 3.670523 GGTAAACGGTTCACTCTAACGTC 59.329 47.826 0.00 0.00 0.00 4.34
500 530 4.357996 CTCGATTCTAGGGTAAACGGTTC 58.642 47.826 0.00 0.00 0.00 3.62
503 537 2.100252 TGCTCGATTCTAGGGTAAACGG 59.900 50.000 0.00 0.00 0.00 4.44
606 641 4.033129 CCGTCCTCACGCGATTTTAAATTA 59.967 41.667 15.93 0.00 45.29 1.40
608 643 2.350498 CCGTCCTCACGCGATTTTAAAT 59.650 45.455 15.93 0.00 45.29 1.40
618 659 2.092882 GTGTTAGCCGTCCTCACGC 61.093 63.158 0.00 0.00 45.29 5.34
649 690 3.174573 GCCGGGTTAACGACGACG 61.175 66.667 19.01 5.58 45.75 5.12
650 691 2.770132 AAGGCCGGGTTAACGACGAC 62.770 60.000 19.01 10.12 35.47 4.34
651 692 2.573083 AAGGCCGGGTTAACGACGA 61.573 57.895 19.01 0.00 35.47 4.20
656 697 0.594602 GAACACAAGGCCGGGTTAAC 59.405 55.000 2.18 0.00 0.00 2.01
657 698 0.537828 GGAACACAAGGCCGGGTTAA 60.538 55.000 2.18 0.00 0.00 2.01
715 765 9.349713 CTTATCCTAATAATTTGGCAGTAACCA 57.650 33.333 0.00 0.00 38.16 3.67
793 858 2.880890 TGAGAAGAAGAAAGCTGTTGCC 59.119 45.455 0.00 0.00 40.80 4.52
820 889 2.165845 CGTCTGTCCCTATCCGTTTTCT 59.834 50.000 0.00 0.00 0.00 2.52
851 920 2.897350 GGCCTGCTACGACCATGC 60.897 66.667 0.00 0.00 0.00 4.06
939 1016 0.103208 CCGGGGATCTGAAGAGAACG 59.897 60.000 0.00 0.00 0.00 3.95
940 1017 1.486211 TCCGGGGATCTGAAGAGAAC 58.514 55.000 0.00 0.00 0.00 3.01
941 1018 2.111384 CTTCCGGGGATCTGAAGAGAA 58.889 52.381 0.00 0.00 38.16 2.87
963 1040 4.021925 AGTTGCTCCGGGTCTGGC 62.022 66.667 0.00 0.00 0.00 4.85
983 1060 2.042831 ATGCCCGAGAACTTGCTGC 61.043 57.895 0.00 0.00 0.00 5.25
1573 2014 3.503827 TGTACAACAGGTATCGAGCAG 57.496 47.619 0.00 0.00 33.76 4.24
1637 2078 4.210120 CAGATGCTAATGACGAGTTAAGCC 59.790 45.833 0.00 0.00 0.00 4.35
1678 2119 4.154918 ACAATCATCGAGTGCTTTTCCTTC 59.845 41.667 0.00 0.00 30.24 3.46
1828 2270 1.266989 GCAAACAAAAGAGGACCGGAG 59.733 52.381 9.46 0.00 0.00 4.63
1829 2271 1.314730 GCAAACAAAAGAGGACCGGA 58.685 50.000 9.46 0.00 0.00 5.14
1830 2272 0.040425 CGCAAACAAAAGAGGACCGG 60.040 55.000 0.00 0.00 0.00 5.28
1831 2273 0.661020 ACGCAAACAAAAGAGGACCG 59.339 50.000 0.00 0.00 0.00 4.79
1832 2274 5.616488 TTATACGCAAACAAAAGAGGACC 57.384 39.130 0.00 0.00 0.00 4.46
1833 2275 8.515473 AAAATTATACGCAAACAAAAGAGGAC 57.485 30.769 0.00 0.00 0.00 3.85
1857 2299 6.153170 AGACTAAACAGGGAAAAACGGAAAAA 59.847 34.615 0.00 0.00 0.00 1.94
1858 2300 5.653330 AGACTAAACAGGGAAAAACGGAAAA 59.347 36.000 0.00 0.00 0.00 2.29
1859 2301 5.066764 CAGACTAAACAGGGAAAAACGGAAA 59.933 40.000 0.00 0.00 0.00 3.13
1860 2302 4.577283 CAGACTAAACAGGGAAAAACGGAA 59.423 41.667 0.00 0.00 0.00 4.30
1861 2303 4.131596 CAGACTAAACAGGGAAAAACGGA 58.868 43.478 0.00 0.00 0.00 4.69
1862 2304 3.304458 GCAGACTAAACAGGGAAAAACGG 60.304 47.826 0.00 0.00 0.00 4.44
1863 2305 3.606153 CGCAGACTAAACAGGGAAAAACG 60.606 47.826 0.00 0.00 0.00 3.60
1864 2306 3.852205 GCGCAGACTAAACAGGGAAAAAC 60.852 47.826 0.30 0.00 0.00 2.43
1865 2307 2.292292 GCGCAGACTAAACAGGGAAAAA 59.708 45.455 0.30 0.00 0.00 1.94
1866 2308 1.877443 GCGCAGACTAAACAGGGAAAA 59.123 47.619 0.30 0.00 0.00 2.29
1867 2309 1.202710 TGCGCAGACTAAACAGGGAAA 60.203 47.619 5.66 0.00 0.00 3.13
1868 2310 0.394938 TGCGCAGACTAAACAGGGAA 59.605 50.000 5.66 0.00 0.00 3.97
1869 2311 0.613260 ATGCGCAGACTAAACAGGGA 59.387 50.000 18.32 0.00 0.00 4.20
1870 2312 1.009829 GATGCGCAGACTAAACAGGG 58.990 55.000 18.32 0.00 0.00 4.45
1871 2313 1.725641 TGATGCGCAGACTAAACAGG 58.274 50.000 18.32 0.00 0.00 4.00
1882 2324 0.239082 CAACAAAGAGCTGATGCGCA 59.761 50.000 14.96 14.96 45.42 6.09
1883 2325 0.239347 ACAACAAAGAGCTGATGCGC 59.761 50.000 0.00 0.00 45.42 6.09
1884 2326 1.959747 CACAACAAAGAGCTGATGCG 58.040 50.000 0.00 0.00 45.42 4.73
1885 2327 1.268899 AGCACAACAAAGAGCTGATGC 59.731 47.619 0.00 0.00 34.12 3.91
1890 2332 0.950116 GAGCAGCACAACAAAGAGCT 59.050 50.000 0.00 0.00 35.80 4.09
1891 2333 0.950116 AGAGCAGCACAACAAAGAGC 59.050 50.000 0.00 0.00 0.00 4.09
1892 2334 3.181493 ACAAAGAGCAGCACAACAAAGAG 60.181 43.478 0.00 0.00 0.00 2.85
1893 2335 2.754552 ACAAAGAGCAGCACAACAAAGA 59.245 40.909 0.00 0.00 0.00 2.52
1894 2336 3.155093 ACAAAGAGCAGCACAACAAAG 57.845 42.857 0.00 0.00 0.00 2.77
1895 2337 3.252400 CAACAAAGAGCAGCACAACAAA 58.748 40.909 0.00 0.00 0.00 2.83
1896 2338 2.230992 ACAACAAAGAGCAGCACAACAA 59.769 40.909 0.00 0.00 0.00 2.83
1897 2339 1.818060 ACAACAAAGAGCAGCACAACA 59.182 42.857 0.00 0.00 0.00 3.33
1898 2340 2.187707 CACAACAAAGAGCAGCACAAC 58.812 47.619 0.00 0.00 0.00 3.32
1899 2341 1.469595 GCACAACAAAGAGCAGCACAA 60.470 47.619 0.00 0.00 0.00 3.33
1900 2342 0.101040 GCACAACAAAGAGCAGCACA 59.899 50.000 0.00 0.00 0.00 4.57
1901 2343 0.383231 AGCACAACAAAGAGCAGCAC 59.617 50.000 0.00 0.00 0.00 4.40
1902 2344 0.382873 CAGCACAACAAAGAGCAGCA 59.617 50.000 0.00 0.00 0.00 4.41
1903 2345 0.938168 GCAGCACAACAAAGAGCAGC 60.938 55.000 0.00 0.00 31.64 5.25
1904 2346 0.666913 AGCAGCACAACAAAGAGCAG 59.333 50.000 0.00 0.00 0.00 4.24
1905 2347 1.105457 AAGCAGCACAACAAAGAGCA 58.895 45.000 0.00 0.00 0.00 4.26
1906 2348 2.122564 GAAAGCAGCACAACAAAGAGC 58.877 47.619 0.00 0.00 0.00 4.09
1907 2349 2.544486 GGGAAAGCAGCACAACAAAGAG 60.544 50.000 0.00 0.00 0.00 2.85
1908 2350 1.408702 GGGAAAGCAGCACAACAAAGA 59.591 47.619 0.00 0.00 0.00 2.52
1909 2351 1.410153 AGGGAAAGCAGCACAACAAAG 59.590 47.619 0.00 0.00 0.00 2.77
1910 2352 1.484038 AGGGAAAGCAGCACAACAAA 58.516 45.000 0.00 0.00 0.00 2.83
1911 2353 1.136695 CAAGGGAAAGCAGCACAACAA 59.863 47.619 0.00 0.00 0.00 2.83
1912 2354 0.746063 CAAGGGAAAGCAGCACAACA 59.254 50.000 0.00 0.00 0.00 3.33
1913 2355 0.032540 CCAAGGGAAAGCAGCACAAC 59.967 55.000 0.00 0.00 0.00 3.32
1914 2356 0.396974 ACCAAGGGAAAGCAGCACAA 60.397 50.000 0.00 0.00 0.00 3.33
1915 2357 1.108727 CACCAAGGGAAAGCAGCACA 61.109 55.000 0.00 0.00 0.00 4.57
1916 2358 1.662044 CACCAAGGGAAAGCAGCAC 59.338 57.895 0.00 0.00 0.00 4.40
1917 2359 2.202395 GCACCAAGGGAAAGCAGCA 61.202 57.895 0.00 0.00 0.00 4.41
1918 2360 2.653115 GCACCAAGGGAAAGCAGC 59.347 61.111 0.00 0.00 0.00 5.25
1919 2361 3.369921 GGCACCAAGGGAAAGCAG 58.630 61.111 0.00 0.00 0.00 4.24
1931 2373 4.437587 AGGCAGATGCAGGGCACC 62.438 66.667 7.19 0.50 43.04 5.01
1932 2374 2.827642 GAGGCAGATGCAGGGCAC 60.828 66.667 7.19 2.36 43.04 5.01
1933 2375 3.332385 TGAGGCAGATGCAGGGCA 61.332 61.111 7.19 0.00 44.86 5.36
1934 2376 1.976132 TACTGAGGCAGATGCAGGGC 61.976 60.000 7.19 0.00 44.36 5.19
1935 2377 0.543277 TTACTGAGGCAGATGCAGGG 59.457 55.000 7.19 0.00 44.36 4.45
1936 2378 2.634815 ATTACTGAGGCAGATGCAGG 57.365 50.000 7.19 0.00 44.36 4.85
1937 2379 4.025396 CGTTAATTACTGAGGCAGATGCAG 60.025 45.833 7.19 0.00 44.36 4.41
1938 2380 3.871006 CGTTAATTACTGAGGCAGATGCA 59.129 43.478 7.19 0.00 44.36 3.96
1939 2381 3.248602 CCGTTAATTACTGAGGCAGATGC 59.751 47.826 0.82 0.00 41.14 3.91
1940 2382 4.508124 GTCCGTTAATTACTGAGGCAGATG 59.492 45.833 0.82 0.00 35.18 2.90
1941 2383 4.694339 GTCCGTTAATTACTGAGGCAGAT 58.306 43.478 0.82 0.00 35.18 2.90
1942 2384 3.428452 CGTCCGTTAATTACTGAGGCAGA 60.428 47.826 0.82 0.00 35.18 4.26
1943 2385 2.858344 CGTCCGTTAATTACTGAGGCAG 59.142 50.000 0.00 0.00 37.52 4.85
1944 2386 2.883574 CGTCCGTTAATTACTGAGGCA 58.116 47.619 0.00 0.00 0.00 4.75
1945 2387 1.591619 GCGTCCGTTAATTACTGAGGC 59.408 52.381 6.87 6.87 42.01 4.70
1946 2388 2.883574 TGCGTCCGTTAATTACTGAGG 58.116 47.619 0.00 0.00 0.00 3.86
1947 2389 3.302480 GCATGCGTCCGTTAATTACTGAG 60.302 47.826 0.00 0.00 0.00 3.35
1948 2390 2.605818 GCATGCGTCCGTTAATTACTGA 59.394 45.455 0.00 0.00 0.00 3.41
1949 2391 2.350192 TGCATGCGTCCGTTAATTACTG 59.650 45.455 14.09 0.00 0.00 2.74
1950 2392 2.350498 GTGCATGCGTCCGTTAATTACT 59.650 45.455 14.09 0.00 0.00 2.24
1951 2393 2.700694 GTGCATGCGTCCGTTAATTAC 58.299 47.619 14.09 0.00 0.00 1.89
1952 2394 1.325037 CGTGCATGCGTCCGTTAATTA 59.675 47.619 14.09 0.00 0.00 1.40
1953 2395 0.096281 CGTGCATGCGTCCGTTAATT 59.904 50.000 14.09 0.00 0.00 1.40
1954 2396 1.701545 CCGTGCATGCGTCCGTTAAT 61.702 55.000 14.09 0.00 0.00 1.40
1955 2397 2.384309 CCGTGCATGCGTCCGTTAA 61.384 57.895 14.09 0.00 0.00 2.01
1956 2398 2.811747 CCGTGCATGCGTCCGTTA 60.812 61.111 14.09 0.00 0.00 3.18
1969 2411 4.694233 AGTCCTGCTGCAGCCGTG 62.694 66.667 34.64 23.26 41.18 4.94
1970 2412 4.385405 GAGTCCTGCTGCAGCCGT 62.385 66.667 34.64 13.77 41.18 5.68
1972 2414 4.025858 TGGAGTCCTGCTGCAGCC 62.026 66.667 34.64 19.67 40.73 4.85
1975 2417 4.025858 GGCTGGAGTCCTGCTGCA 62.026 66.667 32.39 0.88 45.73 4.41
1976 2418 2.833604 ATTGGCTGGAGTCCTGCTGC 62.834 60.000 32.39 21.00 45.73 5.25
1977 2419 0.747283 GATTGGCTGGAGTCCTGCTG 60.747 60.000 32.39 12.78 45.73 4.41
1978 2420 1.606531 GATTGGCTGGAGTCCTGCT 59.393 57.895 32.39 18.42 45.73 4.24
1979 2421 1.452833 GGATTGGCTGGAGTCCTGC 60.453 63.158 28.06 28.06 45.73 4.85
1980 2422 0.107312 CTGGATTGGCTGGAGTCCTG 60.107 60.000 11.33 11.47 0.00 3.86
1981 2423 0.252881 TCTGGATTGGCTGGAGTCCT 60.253 55.000 11.33 0.00 0.00 3.85
1982 2424 0.179936 CTCTGGATTGGCTGGAGTCC 59.820 60.000 0.73 0.73 0.00 3.85
1983 2425 0.463474 GCTCTGGATTGGCTGGAGTC 60.463 60.000 0.00 0.00 0.00 3.36
1984 2426 1.606531 GCTCTGGATTGGCTGGAGT 59.393 57.895 0.00 0.00 0.00 3.85
1985 2427 1.523258 CGCTCTGGATTGGCTGGAG 60.523 63.158 0.00 0.00 0.00 3.86
1986 2428 2.586245 CGCTCTGGATTGGCTGGA 59.414 61.111 0.00 0.00 0.00 3.86
1987 2429 2.515523 CCGCTCTGGATTGGCTGG 60.516 66.667 0.00 0.00 42.00 4.85
1988 2430 3.207669 GCCGCTCTGGATTGGCTG 61.208 66.667 6.14 0.00 44.16 4.85
1991 2433 2.842256 GCATGCCGCTCTGGATTGG 61.842 63.158 6.36 0.00 42.00 3.16
1992 2434 2.060004 CTGCATGCCGCTCTGGATTG 62.060 60.000 16.68 0.00 42.00 2.67
1993 2435 1.822613 CTGCATGCCGCTCTGGATT 60.823 57.895 16.68 0.00 42.00 3.01
1994 2436 2.053259 ATCTGCATGCCGCTCTGGAT 62.053 55.000 16.68 4.73 42.00 3.41
1995 2437 2.738938 ATCTGCATGCCGCTCTGGA 61.739 57.895 16.68 2.53 42.00 3.86
1996 2438 2.203167 ATCTGCATGCCGCTCTGG 60.203 61.111 16.68 0.00 43.06 3.86
1997 2439 2.543802 CCATCTGCATGCCGCTCTG 61.544 63.158 16.68 7.15 43.06 3.35
1998 2440 2.203167 CCATCTGCATGCCGCTCT 60.203 61.111 16.68 0.00 43.06 4.09
1999 2441 3.285215 CCCATCTGCATGCCGCTC 61.285 66.667 16.68 0.00 43.06 5.03
2003 2445 4.845447 TGGGCCCATCTGCATGCC 62.845 66.667 24.45 0.00 43.26 4.40
2004 2446 2.760799 TTGGGCCCATCTGCATGC 60.761 61.111 29.23 11.82 0.00 4.06
2005 2447 2.792947 GCTTGGGCCCATCTGCATG 61.793 63.158 29.23 10.93 0.00 4.06
2006 2448 2.443390 GCTTGGGCCCATCTGCAT 60.443 61.111 29.23 0.00 0.00 3.96
2023 2465 4.776322 TCTTCCCCACGCGCATGG 62.776 66.667 17.26 17.26 39.71 3.66
2024 2466 3.197790 CTCTTCCCCACGCGCATG 61.198 66.667 5.73 0.58 0.00 4.06
2025 2467 2.463589 TTTCTCTTCCCCACGCGCAT 62.464 55.000 5.73 0.00 0.00 4.73
2026 2468 2.668185 TTTTCTCTTCCCCACGCGCA 62.668 55.000 5.73 0.00 0.00 6.09
2027 2469 1.912371 CTTTTCTCTTCCCCACGCGC 61.912 60.000 5.73 0.00 0.00 6.86
2028 2470 1.298859 CCTTTTCTCTTCCCCACGCG 61.299 60.000 3.53 3.53 0.00 6.01
2029 2471 0.960861 CCCTTTTCTCTTCCCCACGC 60.961 60.000 0.00 0.00 0.00 5.34
2030 2472 0.322546 CCCCTTTTCTCTTCCCCACG 60.323 60.000 0.00 0.00 0.00 4.94
2031 2473 1.073098 TCCCCTTTTCTCTTCCCCAC 58.927 55.000 0.00 0.00 0.00 4.61
2032 2474 1.073098 GTCCCCTTTTCTCTTCCCCA 58.927 55.000 0.00 0.00 0.00 4.96
2033 2475 0.331954 GGTCCCCTTTTCTCTTCCCC 59.668 60.000 0.00 0.00 0.00 4.81
2034 2476 1.073098 TGGTCCCCTTTTCTCTTCCC 58.927 55.000 0.00 0.00 0.00 3.97
2035 2477 2.971901 TTGGTCCCCTTTTCTCTTCC 57.028 50.000 0.00 0.00 0.00 3.46
2036 2478 3.157881 CCTTTGGTCCCCTTTTCTCTTC 58.842 50.000 0.00 0.00 0.00 2.87
2037 2479 2.789399 TCCTTTGGTCCCCTTTTCTCTT 59.211 45.455 0.00 0.00 0.00 2.85
2038 2480 2.376855 CTCCTTTGGTCCCCTTTTCTCT 59.623 50.000 0.00 0.00 0.00 3.10
2039 2481 2.796557 CTCCTTTGGTCCCCTTTTCTC 58.203 52.381 0.00 0.00 0.00 2.87
2040 2482 1.203063 GCTCCTTTGGTCCCCTTTTCT 60.203 52.381 0.00 0.00 0.00 2.52
2041 2483 1.257743 GCTCCTTTGGTCCCCTTTTC 58.742 55.000 0.00 0.00 0.00 2.29
2042 2484 0.178932 GGCTCCTTTGGTCCCCTTTT 60.179 55.000 0.00 0.00 0.00 2.27
2043 2485 1.074296 AGGCTCCTTTGGTCCCCTTT 61.074 55.000 0.00 0.00 0.00 3.11
2044 2486 1.466186 AGGCTCCTTTGGTCCCCTT 60.466 57.895 0.00 0.00 0.00 3.95
2045 2487 1.925972 GAGGCTCCTTTGGTCCCCT 60.926 63.158 2.15 0.00 0.00 4.79
2046 2488 2.677848 GAGGCTCCTTTGGTCCCC 59.322 66.667 2.15 0.00 0.00 4.81
2047 2489 2.677848 GGAGGCTCCTTTGGTCCC 59.322 66.667 26.44 0.00 32.53 4.46
2048 2490 1.789576 TTGGGAGGCTCCTTTGGTCC 61.790 60.000 31.39 14.45 36.57 4.46
2049 2491 0.332972 ATTGGGAGGCTCCTTTGGTC 59.667 55.000 31.39 15.17 36.57 4.02
2050 2492 0.332972 GATTGGGAGGCTCCTTTGGT 59.667 55.000 31.39 14.21 36.57 3.67
2051 2493 0.332632 TGATTGGGAGGCTCCTTTGG 59.667 55.000 31.39 0.00 36.57 3.28
2052 2494 1.467920 GTGATTGGGAGGCTCCTTTG 58.532 55.000 31.39 0.00 36.57 2.77
2053 2495 0.332972 GGTGATTGGGAGGCTCCTTT 59.667 55.000 31.39 17.05 36.57 3.11
2054 2496 1.575447 GGGTGATTGGGAGGCTCCTT 61.575 60.000 31.39 17.40 36.57 3.36
2055 2497 2.003548 GGGTGATTGGGAGGCTCCT 61.004 63.158 31.39 13.72 36.57 3.69
2056 2498 2.597903 GGGTGATTGGGAGGCTCC 59.402 66.667 25.80 25.80 35.23 4.70
2057 2499 2.190578 CGGGTGATTGGGAGGCTC 59.809 66.667 5.78 5.78 0.00 4.70
2058 2500 4.115199 GCGGGTGATTGGGAGGCT 62.115 66.667 0.00 0.00 0.00 4.58
2059 2501 3.721370 ATGCGGGTGATTGGGAGGC 62.721 63.158 0.00 0.00 0.00 4.70
2060 2502 1.825191 CATGCGGGTGATTGGGAGG 60.825 63.158 0.00 0.00 0.00 4.30
2061 2503 2.484062 GCATGCGGGTGATTGGGAG 61.484 63.158 0.00 0.00 0.00 4.30
2062 2504 2.440065 GCATGCGGGTGATTGGGA 60.440 61.111 0.00 0.00 0.00 4.37
2063 2505 2.755064 TGCATGCGGGTGATTGGG 60.755 61.111 14.09 0.00 0.00 4.12
2064 2506 2.802792 CTGCATGCGGGTGATTGG 59.197 61.111 19.33 0.00 0.00 3.16
2065 2507 2.103538 GCTGCATGCGGGTGATTG 59.896 61.111 27.34 4.34 0.00 2.67
2074 2516 1.386533 ACCAGTCAATAGCTGCATGC 58.613 50.000 11.82 11.82 43.29 4.06
2075 2517 2.479049 GCAACCAGTCAATAGCTGCATG 60.479 50.000 1.02 0.00 32.93 4.06
2076 2518 1.747355 GCAACCAGTCAATAGCTGCAT 59.253 47.619 1.02 0.00 32.93 3.96
2077 2519 1.167851 GCAACCAGTCAATAGCTGCA 58.832 50.000 1.02 0.00 32.93 4.41
2078 2520 1.167851 TGCAACCAGTCAATAGCTGC 58.832 50.000 0.00 0.00 32.93 5.25
2079 2521 3.441222 TCAATGCAACCAGTCAATAGCTG 59.559 43.478 0.00 0.00 0.00 4.24
2080 2522 3.689347 TCAATGCAACCAGTCAATAGCT 58.311 40.909 0.00 0.00 0.00 3.32
2081 2523 3.733077 GCTCAATGCAACCAGTCAATAGC 60.733 47.826 0.00 0.00 42.31 2.97
2082 2524 4.025015 GCTCAATGCAACCAGTCAATAG 57.975 45.455 0.00 0.00 42.31 1.73
2095 2537 5.708948 TGTGGTAGTTTAATTGCTCAATGC 58.291 37.500 0.00 0.00 43.25 3.56
2096 2538 7.765307 AGATGTGGTAGTTTAATTGCTCAATG 58.235 34.615 0.00 0.00 0.00 2.82
2097 2539 7.831193 AGAGATGTGGTAGTTTAATTGCTCAAT 59.169 33.333 0.00 0.00 0.00 2.57
2098 2540 7.168219 AGAGATGTGGTAGTTTAATTGCTCAA 58.832 34.615 0.00 0.00 0.00 3.02
2099 2541 6.711277 AGAGATGTGGTAGTTTAATTGCTCA 58.289 36.000 0.00 0.00 0.00 4.26
2100 2542 6.258947 GGAGAGATGTGGTAGTTTAATTGCTC 59.741 42.308 0.00 0.00 0.00 4.26
2101 2543 6.116126 GGAGAGATGTGGTAGTTTAATTGCT 58.884 40.000 0.00 0.00 0.00 3.91
2102 2544 5.006746 CGGAGAGATGTGGTAGTTTAATTGC 59.993 44.000 0.00 0.00 0.00 3.56
2103 2545 6.338146 TCGGAGAGATGTGGTAGTTTAATTG 58.662 40.000 0.00 0.00 0.00 2.32
2104 2546 6.540438 TCGGAGAGATGTGGTAGTTTAATT 57.460 37.500 0.00 0.00 0.00 1.40
2105 2547 6.732896 ATCGGAGAGATGTGGTAGTTTAAT 57.267 37.500 0.00 0.00 43.63 1.40
2118 2560 2.298446 CCTGTACATGCATCGGAGAGAT 59.702 50.000 0.00 0.00 43.63 2.75
2119 2561 1.683385 CCTGTACATGCATCGGAGAGA 59.317 52.381 0.00 0.00 43.63 3.10
2120 2562 1.269988 CCCTGTACATGCATCGGAGAG 60.270 57.143 0.00 0.00 43.63 3.20
2121 2563 0.752658 CCCTGTACATGCATCGGAGA 59.247 55.000 0.00 0.00 45.75 3.71
2122 2564 0.250038 CCCCTGTACATGCATCGGAG 60.250 60.000 0.00 0.00 0.00 4.63
2123 2565 1.829456 CCCCTGTACATGCATCGGA 59.171 57.895 0.00 0.00 0.00 4.55
2124 2566 1.893808 GCCCCTGTACATGCATCGG 60.894 63.158 0.00 0.00 0.00 4.18
2125 2567 0.747644 TTGCCCCTGTACATGCATCG 60.748 55.000 13.53 0.00 33.08 3.84
2126 2568 1.696063 ATTGCCCCTGTACATGCATC 58.304 50.000 13.53 0.00 33.08 3.91
2127 2569 3.530928 ATATTGCCCCTGTACATGCAT 57.469 42.857 13.53 0.00 33.08 3.96
2128 2570 3.394274 ACTATATTGCCCCTGTACATGCA 59.606 43.478 9.91 9.91 0.00 3.96
2129 2571 4.003648 GACTATATTGCCCCTGTACATGC 58.996 47.826 0.00 0.28 0.00 4.06
2130 2572 4.579869 GGACTATATTGCCCCTGTACATG 58.420 47.826 0.00 0.00 0.00 3.21
2131 2573 3.260884 CGGACTATATTGCCCCTGTACAT 59.739 47.826 0.00 0.00 0.00 2.29
2132 2574 2.631062 CGGACTATATTGCCCCTGTACA 59.369 50.000 0.00 0.00 0.00 2.90
2133 2575 2.895404 TCGGACTATATTGCCCCTGTAC 59.105 50.000 0.00 0.00 0.00 2.90
2134 2576 3.247948 TCGGACTATATTGCCCCTGTA 57.752 47.619 0.00 0.00 0.00 2.74
2135 2577 2.097110 TCGGACTATATTGCCCCTGT 57.903 50.000 0.00 0.00 0.00 4.00
2136 2578 3.485463 TTTCGGACTATATTGCCCCTG 57.515 47.619 0.00 0.00 0.00 4.45
2137 2579 4.165372 TCTTTTTCGGACTATATTGCCCCT 59.835 41.667 0.00 0.00 0.00 4.79
2138 2580 4.457466 TCTTTTTCGGACTATATTGCCCC 58.543 43.478 0.00 0.00 0.00 5.80
2139 2581 5.562890 GCATCTTTTTCGGACTATATTGCCC 60.563 44.000 0.00 0.00 0.00 5.36
2140 2582 5.008613 TGCATCTTTTTCGGACTATATTGCC 59.991 40.000 0.00 0.00 0.00 4.52
2141 2583 6.060028 TGCATCTTTTTCGGACTATATTGC 57.940 37.500 0.00 0.00 0.00 3.56
2142 2584 6.580041 GCATGCATCTTTTTCGGACTATATTG 59.420 38.462 14.21 0.00 0.00 1.90
2143 2585 6.262944 TGCATGCATCTTTTTCGGACTATATT 59.737 34.615 18.46 0.00 0.00 1.28
2144 2586 5.764686 TGCATGCATCTTTTTCGGACTATAT 59.235 36.000 18.46 0.00 0.00 0.86
2145 2587 5.122519 TGCATGCATCTTTTTCGGACTATA 58.877 37.500 18.46 0.00 0.00 1.31
2146 2588 3.947196 TGCATGCATCTTTTTCGGACTAT 59.053 39.130 18.46 0.00 0.00 2.12
2147 2589 3.342719 TGCATGCATCTTTTTCGGACTA 58.657 40.909 18.46 0.00 0.00 2.59
2148 2590 2.161855 TGCATGCATCTTTTTCGGACT 58.838 42.857 18.46 0.00 0.00 3.85
2149 2591 2.095059 ACTGCATGCATCTTTTTCGGAC 60.095 45.455 22.97 0.00 0.00 4.79
2150 2592 2.161855 ACTGCATGCATCTTTTTCGGA 58.838 42.857 22.97 0.00 0.00 4.55
2151 2593 2.523015 GACTGCATGCATCTTTTTCGG 58.477 47.619 22.97 8.59 0.00 4.30
2152 2594 2.523015 GGACTGCATGCATCTTTTTCG 58.477 47.619 22.97 9.38 0.00 3.46
2153 2595 2.494870 AGGGACTGCATGCATCTTTTTC 59.505 45.455 22.97 10.41 37.18 2.29
2154 2596 2.494870 GAGGGACTGCATGCATCTTTTT 59.505 45.455 22.97 5.63 41.55 1.94
2155 2597 2.097825 GAGGGACTGCATGCATCTTTT 58.902 47.619 22.97 7.36 41.55 2.27
2156 2598 1.760192 GAGGGACTGCATGCATCTTT 58.240 50.000 22.97 12.27 41.55 2.52
2157 2599 3.491208 GAGGGACTGCATGCATCTT 57.509 52.632 22.97 8.69 41.55 2.40
2167 2609 0.753262 CGGATACCAAGGAGGGACTG 59.247 60.000 0.00 0.00 41.55 3.51
2169 2611 1.408453 CCCGGATACCAAGGAGGGAC 61.408 65.000 0.73 0.00 43.89 4.46
2170 2612 1.074775 CCCGGATACCAAGGAGGGA 60.075 63.158 0.73 0.00 43.89 4.20
2171 2613 2.819284 GCCCGGATACCAAGGAGGG 61.819 68.421 0.73 0.00 43.89 4.30
2172 2614 1.345715 AAGCCCGGATACCAAGGAGG 61.346 60.000 0.73 0.00 45.67 4.30
2173 2615 0.106894 GAAGCCCGGATACCAAGGAG 59.893 60.000 0.73 0.00 0.00 3.69
2174 2616 0.326238 AGAAGCCCGGATACCAAGGA 60.326 55.000 0.73 0.00 0.00 3.36
2175 2617 0.106894 GAGAAGCCCGGATACCAAGG 59.893 60.000 0.73 0.00 0.00 3.61
2176 2618 0.106894 GGAGAAGCCCGGATACCAAG 59.893 60.000 0.73 0.00 0.00 3.61
2177 2619 0.326238 AGGAGAAGCCCGGATACCAA 60.326 55.000 0.73 0.00 37.37 3.67
2178 2620 0.326238 AAGGAGAAGCCCGGATACCA 60.326 55.000 0.73 0.00 37.37 3.25
2179 2621 1.713297 TAAGGAGAAGCCCGGATACC 58.287 55.000 0.73 0.00 37.37 2.73
2180 2622 3.119566 CGTATAAGGAGAAGCCCGGATAC 60.120 52.174 0.73 0.00 37.37 2.24
2181 2623 3.087031 CGTATAAGGAGAAGCCCGGATA 58.913 50.000 0.73 0.00 37.37 2.59
2182 2624 1.893801 CGTATAAGGAGAAGCCCGGAT 59.106 52.381 0.73 0.00 37.37 4.18
2183 2625 1.325355 CGTATAAGGAGAAGCCCGGA 58.675 55.000 0.73 0.00 37.37 5.14
2184 2626 0.319641 GCGTATAAGGAGAAGCCCGG 60.320 60.000 0.00 0.00 37.37 5.73
2185 2627 0.387929 TGCGTATAAGGAGAAGCCCG 59.612 55.000 0.00 0.00 37.37 6.13
2186 2628 1.687123 TCTGCGTATAAGGAGAAGCCC 59.313 52.381 7.40 0.00 35.65 5.19
2187 2629 2.623889 TCTCTGCGTATAAGGAGAAGCC 59.376 50.000 10.77 0.00 38.12 4.35
2188 2630 3.992260 TCTCTGCGTATAAGGAGAAGC 57.008 47.619 10.77 0.00 38.12 3.86
2209 2651 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
2210 2652 1.203275 AGTACTCCCTCCGGTCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
2211 2653 0.412640 AGTACTCCCTCCGGTCCTTT 59.587 55.000 0.00 0.00 0.00 3.11
2212 2654 1.302907 TAGTACTCCCTCCGGTCCTT 58.697 55.000 0.00 0.00 0.00 3.36
2213 2655 1.532038 ATAGTACTCCCTCCGGTCCT 58.468 55.000 0.00 0.00 0.00 3.85
2214 2656 2.378378 AATAGTACTCCCTCCGGTCC 57.622 55.000 0.00 0.00 0.00 4.46
2215 2657 4.892345 ACTAAAATAGTACTCCCTCCGGTC 59.108 45.833 0.00 0.00 37.23 4.79
2216 2658 4.648307 CACTAAAATAGTACTCCCTCCGGT 59.352 45.833 0.00 0.00 37.23 5.28
2217 2659 4.648307 ACACTAAAATAGTACTCCCTCCGG 59.352 45.833 0.00 0.00 37.23 5.14
2218 2660 5.848833 ACACTAAAATAGTACTCCCTCCG 57.151 43.478 0.00 0.00 37.23 4.63
2219 2661 9.597170 CTTTTACACTAAAATAGTACTCCCTCC 57.403 37.037 0.00 0.00 37.07 4.30
2264 2706 6.349445 CGTGATCTTGTACTCTCTTGGTTACT 60.349 42.308 0.00 0.00 0.00 2.24
2355 2811 4.104383 TCTGATGGAGTTGGCTCTTTTT 57.896 40.909 0.00 0.00 41.38 1.94
2420 2877 7.958674 TGTTTTGTTTTACATCTTCACTTTGC 58.041 30.769 0.00 0.00 0.00 3.68
2425 2882 7.136119 TCGGATGTTTTGTTTTACATCTTCAC 58.864 34.615 13.11 0.00 46.22 3.18
2428 2885 8.934507 TTTTCGGATGTTTTGTTTTACATCTT 57.065 26.923 13.11 0.00 46.22 2.40
2433 2890 8.402326 AGTTCTTTTCGGATGTTTTGTTTTAC 57.598 30.769 0.00 0.00 0.00 2.01
2449 2906 9.914923 AACATGCGAAAATTTTAAGTTCTTTTC 57.085 25.926 2.75 0.00 35.34 2.29
2450 2907 9.914923 GAACATGCGAAAATTTTAAGTTCTTTT 57.085 25.926 2.75 0.00 32.42 2.27
2451 2908 9.092876 TGAACATGCGAAAATTTTAAGTTCTTT 57.907 25.926 21.08 7.40 35.24 2.52
2452 2909 8.539674 GTGAACATGCGAAAATTTTAAGTTCTT 58.460 29.630 21.08 7.18 35.24 2.52
2453 2910 7.704472 TGTGAACATGCGAAAATTTTAAGTTCT 59.296 29.630 21.08 3.36 35.24 3.01
2454 2911 7.836512 TGTGAACATGCGAAAATTTTAAGTTC 58.163 30.769 2.75 12.87 34.89 3.01
2455 2912 7.763172 TGTGAACATGCGAAAATTTTAAGTT 57.237 28.000 2.75 4.80 0.00 2.66
2456 2913 7.763172 TTGTGAACATGCGAAAATTTTAAGT 57.237 28.000 2.75 0.00 0.00 2.24
2459 2916 9.631452 TGATATTGTGAACATGCGAAAATTTTA 57.369 25.926 2.75 0.00 0.00 1.52
2460 2917 8.531622 TGATATTGTGAACATGCGAAAATTTT 57.468 26.923 2.28 2.28 0.00 1.82
2461 2918 8.531622 TTGATATTGTGAACATGCGAAAATTT 57.468 26.923 0.00 0.00 0.00 1.82
2462 2919 8.531622 TTTGATATTGTGAACATGCGAAAATT 57.468 26.923 0.00 0.00 0.00 1.82
2463 2920 8.706492 ATTTGATATTGTGAACATGCGAAAAT 57.294 26.923 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.